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Bruxaux J, Zhao W, Hall D, Curtu AL, Androsiuk P, Drouzas AD, Gailing O, Konrad H, Sullivan AR, Semerikov V, Wang XR. Scots pine - panmixia and the elusive signal of genetic adaptation. New Phytol 2024. [PMID: 38308133 DOI: 10.1111/nph.19563] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2023] [Accepted: 01/14/2024] [Indexed: 02/04/2024]
Abstract
Scots pine is the foundation species of diverse forested ecosystems across Eurasia and displays remarkable ecological breadth, occurring in environments ranging from temperate rainforests to arid tundra margins. Such expansive distributions can be favored by various demographic and adaptive processes and the interactions between them. To understand the impact of neutral and selective forces on genetic structure in Scots pine, we conducted range-wide population genetic analyses on 2321 trees from 202 populations using genotyping-by-sequencing, reconstructed the recent demography of the species and examined signals of genetic adaptation. We found a high and uniform genetic diversity across the entire range (global FST 0.048), no increased genetic load in expanding populations and minor impact of the last glacial maximum on historical population sizes. Genetic-environmental associations identified only a handful of single-nucleotide polymorphisms significantly linked to environmental gradients. The results suggest that extensive gene flow is predominantly responsible for the observed genetic patterns in Scots pine. The apparent missing signal of genetic adaptation is likely attributed to the intricate genetic architecture controlling adaptation to multi-dimensional environments. The panmixia metapopulation of Scots pine offers a good study system for further exploration into how genetic adaptation and plasticity evolve under gene flow and changing environment.
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Affiliation(s)
- Jade Bruxaux
- Department of Ecology and Environmental Science, Umeå Plant Science Center, Umeå University, 901 87, Umeå, Sweden
| | - Wei Zhao
- Department of Ecology and Environmental Science, Umeå Plant Science Center, Umeå University, 901 87, Umeå, Sweden
| | - David Hall
- Department of Ecology and Environmental Science, Umeå Plant Science Center, Umeå University, 901 87, Umeå, Sweden
- Forestry Research Institute of Sweden (Skogforsk), 918 21, Sävar, Sweden
| | | | - Piotr Androsiuk
- Department of Plant Physiology, Genetics and Biotechnology, Faculty of Biology and Biotechnology, University of Warmia and Mazury in Olsztyn, 10-719, Olsztyn, Poland
| | - Andreas D Drouzas
- Laboratory of Systematic Botany and Phytogeography, School of Biology, Aristotle University of Thessaloniki, 54124, Thessaloniki, Greece
| | - Oliver Gailing
- Department of Forest Genetics and Forest Tree Breeding, University of Göttingen, 37077, Göttingen, Germany
| | - Heino Konrad
- Department of Forest Biodiversity and Nature Conservation, Unit of Ecological Genetics, Austrian Research Centre for Forests (BFW), 1140, Vienna, Austria
| | - Alexis R Sullivan
- Department of Ecology and Environmental Science, Umeå Plant Science Center, Umeå University, 901 87, Umeå, Sweden
| | - Vladimir Semerikov
- Institute of Plant and Animal Ecology, Ural Division of Russian Academy of Sciences, 620144, Ekaterinburg, Russia
| | - Xiao-Ru Wang
- Department of Ecology and Environmental Science, Umeå Plant Science Center, Umeå University, 901 87, Umeå, Sweden
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Opgenoorth L, Dauphin B, Benavides R, Heer K, Alizoti P, Martínez-Sancho E, Alía R, Ambrosio O, Audrey A, Auñón F, Avanzi C, Avramidou E, Bagnoli F, Barbas E, Bastias CC, Bastien C, Ballesteros E, Beffa G, Bernier F, Bignalet H, Bodineau G, Bouic D, Brodbeck S, Brunetto W, Buchovska J, Buy M, Cabanillas-Saldaña AM, Carvalho B, Cheval N, Climent JM, Correard M, Cremer E, Danusevičius D, Del Caño F, Denou JL, di Gerardi N, Dokhelar B, Ducousso A, Eskild Nilsen A, Farsakoglou AM, Fonti P, Ganopoulos I, García Del Barrio JM, Gilg O, González-Martínez SC, Graf R, Gray A, Grivet D, Gugerli F, Hartleitner C, Hollenbach E, Hurel A, Issehut B, Jean F, Jorge V, Jouineau A, Kappner JP, Kärkkäinen K, Kesälahti R, Knutzen F, Kujala ST, Kumpula TA, Labriola M, Lalanne C, Lambertz J, Lascoux M, Lejeune V, Le-Provost G, Levillain J, Liesebach M, López-Quiroga D, Meier B, Malliarou E, Marchon J, Mariotte N, Mas A, Matesanz S, Meischner H, Michotey C, Milesi P, Morganti S, Nievergelt D, Notivol E, Ostreng G, Pakull B, Perry A, Piotti A, Plomion C, Poinot N, Pringarbe M, Puzos L, Pyhäjärvi T, Raffin A, Ramírez-Valiente JA, Rellstab C, Remi D, Richter S, Robledo-Arnuncio JJ, San Segundo S, Savolainen O, Schueler S, Schneck V, Scotti I, Semerikov V, Slámová L, Sønstebø JH, Spanu I, Thevenet J, Tollefsrud MM, Turion N, Vendramin GG, Villar M, von Arx G, Westin J, Fady B, Myking T, Valladares F, Aravanopoulos FA, Cavers S. The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species. Gigascience 2021; 10:6177710. [PMID: 33734368 PMCID: PMC7970660 DOI: 10.1093/gigascience/giab010] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Revised: 12/07/2020] [Accepted: 02/03/2021] [Indexed: 11/14/2022] Open
Abstract
BACKGROUND Progress in the field of evolutionary forest ecology has been hampered by the huge challenge of phenotyping trees across their ranges in their natural environments, and the limitation in high-resolution environmental information. FINDINGS The GenTree Platform contains phenotypic and environmental data from 4,959 trees from 12 ecologically and economically important European forest tree species: Abies alba Mill. (silver fir), Betula pendula Roth. (silver birch), Fagus sylvatica L. (European beech), Picea abies (L.) H. Karst (Norway spruce), Pinus cembra L. (Swiss stone pine), Pinus halepensis Mill. (Aleppo pine), Pinus nigra Arnold (European black pine), Pinus pinaster Aiton (maritime pine), Pinus sylvestris L. (Scots pine), Populus nigra L. (European black poplar), Taxus baccata L. (English yew), and Quercus petraea (Matt.) Liebl. (sessile oak). Phenotypic (height, diameter at breast height, crown size, bark thickness, biomass, straightness, forking, branch angle, fructification), regeneration, environmental in situ measurements (soil depth, vegetation cover, competition indices), and environmental modeling data extracted by using bilinear interpolation accounting for surrounding conditions of each tree (precipitation, temperature, insolation, drought indices) were obtained from trees in 194 sites covering the species' geographic ranges and reflecting local environmental gradients. CONCLUSION The GenTree Platform is a new resource for investigating ecological and evolutionary processes in forest trees. The coherent phenotyping and environmental characterization across 12 species in their European ranges allow for a wide range of analyses from forest ecologists, conservationists, and macro-ecologists. Also, the data here presented can be linked to the GenTree Dendroecological collection, the GenTree Leaf Trait collection, and the GenTree Genomic collection presented elsewhere, which together build the largest evolutionary forest ecology data collection available.
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Affiliation(s)
- Lars Opgenoorth
- Philipps University Marburg, Faculty of Biology, Plant Ecology and Geobotany, Karl-von-Frisch Strasse 8, 35043, Marburg, Germany.,Swiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - Benjamin Dauphin
- Swiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - Raquel Benavides
- LINCGlobal, Department of Biogeography and Global Change, Museo Nacional de Ciencias Naturales, CSIC, Serrano 115 dpdo, 28006, Madrid, Spain
| | - Katrin Heer
- Philipps University Marburg, Faculty of Biology, Plant Ecology and Geobotany, Karl-von-Frisch Strasse 8, 35043, Marburg, Germany
| | - Paraskevi Alizoti
- Aristotle University of Thessaloniki, School of Forestry and Natural Environment, Laboratory of Forest Genetics and Tree Improvement, 54124, Thessaloniki, Greece
| | | | - Ricardo Alía
- Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain
| | - Olivier Ambrosio
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | - Albet Audrey
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), UEFP, 33610, Cestas, France
| | - Francisco Auñón
- Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain
| | - Camilla Avanzi
- Institute of Biosciences and BioResources, National Research Council (CNR), via Madonna del Piano 10, 50019, Sesto, Fiorentino, Italy
| | - Evangelia Avramidou
- Aristotle University of Thessaloniki, School of Forestry and Natural Environment, Laboratory of Forest Genetics and Tree Improvement, 54124, Thessaloniki, Greece
| | - Francesca Bagnoli
- Institute of Biosciences and BioResources, National Research Council (CNR), via Madonna del Piano 10, 50019, Sesto, Fiorentino, Italy
| | - Evangelos Barbas
- Aristotle University of Thessaloniki, School of Forestry and Natural Environment, Laboratory of Forest Genetics and Tree Improvement, 54124, Thessaloniki, Greece
| | - Cristina C Bastias
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), CNRS, UMR 5175, 34090, Montpellier, France
| | - Catherine Bastien
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Dept ECOFA, 45075, Orléans, France
| | - Eduardo Ballesteros
- Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain
| | - Giorgia Beffa
- Swiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - Frédéric Bernier
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), UEFP, 33610, Cestas, France
| | - Henri Bignalet
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), UEFP, 33610, Cestas, France
| | - Guillaume Bodineau
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), GBFOR, 45075, Orléans, France
| | - Damien Bouic
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), UEFP, 33610, Cestas, France
| | - Sabine Brodbeck
- Swiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - William Brunetto
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | - Jurata Buchovska
- Vytautas Magnus University, Studentu Street 11, 53361, Akademija, Lithuania
| | - Melanie Buy
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | - Ana M Cabanillas-Saldaña
- Departamento de Agricultura, Ganadería y Medio Ambiente, Gobierno de Aragón, P. Mª Agustín 36, 50071, Zaragoza, Spain
| | - Bárbara Carvalho
- LINCGlobal, Department of Biogeography and Global Change, Museo Nacional de Ciencias Naturales, CSIC, Serrano 115 dpdo, 28006, Madrid, Spain
| | - Nicolas Cheval
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), UEFP, 33610, Cestas, France
| | - José M Climent
- Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain
| | - Marianne Correard
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | - Eva Cremer
- Bavarian Institute for Forest Genetics, Forstamtsplatz 1, 83317, Teisendorf, Germany
| | | | - Fernando Del Caño
- Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain
| | - Jean-Luc Denou
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), UEFP, 33610, Cestas, France
| | - Nicolas di Gerardi
- Swiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - Bernard Dokhelar
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), UEFP, 33610, Cestas, France
| | | | - Anne Eskild Nilsen
- Division of Forestry and Forest Resources, Norwegian Institute of Bioeconomy Research (NIBIO), P.O. Box 115, 1431, Ås, Norway
| | - Anna-Maria Farsakoglou
- Aristotle University of Thessaloniki, School of Forestry and Natural Environment, Laboratory of Forest Genetics and Tree Improvement, 54124, Thessaloniki, Greece
| | - Patrick Fonti
- Swiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - Ioannis Ganopoulos
- Institute of Plant Breeding and Genetic Resources, Hellenic Agricultural Organization DEMETER (ex NAGREF), 57001, Thermi, Greece
| | - José M García Del Barrio
- Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain
| | - Olivier Gilg
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | | | - René Graf
- Swiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - Alan Gray
- UK Centre for Ecology and Hydrology, Bush Estate Penicuik, EH26 0QB, Edinburgh, UK
| | - Delphine Grivet
- Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain
| | - Felix Gugerli
- Swiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | | | - Enja Hollenbach
- Philipps University Marburg, Faculty of Biology, Plant Ecology and Geobotany, Karl-von-Frisch Strasse 8, 35043, Marburg, Germany
| | - Agathe Hurel
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), UEFP, 33610, Cestas, France
| | - Bernard Issehut
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), UEFP, 33610, Cestas, France
| | - Florence Jean
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | - Veronique Jorge
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), ONF, BIOFORA, 45075, Orléans, France
| | - Arnaud Jouineau
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | - Jan-Philipp Kappner
- Philipps University Marburg, Faculty of Biology, Plant Ecology and Geobotany, Karl-von-Frisch Strasse 8, 35043, Marburg, Germany
| | - Katri Kärkkäinen
- Natural Resources Institute Finland, Paavo Havaksentie 3, 90014, University of Oulu, Finland
| | - Robert Kesälahti
- University of Oulu, Pentti Kaiteran katu 1, 90014, University of Oulu, Finland
| | - Florian Knutzen
- Bavarian Institute for Forest Genetics, Forstamtsplatz 1, 83317, Teisendorf, Germany
| | - Sonja T Kujala
- Natural Resources Institute Finland, Paavo Havaksentie 3, 90014, University of Oulu, Finland
| | - Timo A Kumpula
- University of Oulu, Pentti Kaiteran katu 1, 90014, University of Oulu, Finland
| | - Mariaceleste Labriola
- Institute of Biosciences and BioResources, National Research Council (CNR), via Madonna del Piano 10, 50019, Sesto, Fiorentino, Italy
| | - Celine Lalanne
- INRAE, Univsité de Bordeaux, BIOGECO, 33770, Cestas, France
| | - Johannes Lambertz
- Philipps University Marburg, Faculty of Biology, Plant Ecology and Geobotany, Karl-von-Frisch Strasse 8, 35043, Marburg, Germany
| | - Martin Lascoux
- Department of Ecology & Genetics, EBC, Uppsala University, Norbyvägen 18D, 75236, Uppsala, Sweden
| | - Vincent Lejeune
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), GBFOR, 45075, Orléans, France
| | | | - Joseph Levillain
- Université de Lorraine, AgroParisTech, INRAE, SILVA, 54000, Nancy, France
| | - Mirko Liesebach
- Thünen Institute of Forest Genetics, Sieker Landstr. 2, 22927, Grosshansdorf, Germany
| | - David López-Quiroga
- LINCGlobal, Department of Biogeography and Global Change, Museo Nacional de Ciencias Naturales, CSIC, Serrano 115 dpdo, 28006, Madrid, Spain
| | - Benjamin Meier
- Swiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - Ermioni Malliarou
- Aristotle University of Thessaloniki, School of Forestry and Natural Environment, Laboratory of Forest Genetics and Tree Improvement, 54124, Thessaloniki, Greece
| | - Jérémy Marchon
- Swiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - Nicolas Mariotte
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | - Antonio Mas
- LINCGlobal, Department of Biogeography and Global Change, Museo Nacional de Ciencias Naturales, CSIC, Serrano 115 dpdo, 28006, Madrid, Spain
| | - Silvia Matesanz
- Área de Biodiversidad y Conservación, Universidad Rey Juan Carlos, Calle Tulipán s/n, 28933, Móstoles, Spain
| | - Helge Meischner
- Philipps University Marburg, Faculty of Biology, Plant Ecology and Geobotany, Karl-von-Frisch Strasse 8, 35043, Marburg, Germany
| | - Célia Michotey
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), URGI, Versailles, France
| | - Pascal Milesi
- Department of Ecology & Genetics, EBC, Science for Life Laboratory, Uppsala University, 75236, Uppsala, Sweden
| | - Sandro Morganti
- Swiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - Daniel Nievergelt
- Swiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - Eduardo Notivol
- Centro de Investigación y Tecnología Agroalimentaria de Aragón - Unidad de Recursos Forestales (CITA), Avda. Montañana 930, 50059, Zaragoza, Spain
| | - Geir Ostreng
- Division of Forestry and Forest Resources, Norwegian Institute of Bioeconomy Research (NIBIO), P.O. Box 115, 1431, Ås, Norway
| | - Birte Pakull
- Thünen Institute of Forest Genetics, Sieker Landstr. 2, 22927, Grosshansdorf, Germany
| | - Annika Perry
- UK Centre for Ecology and Hydrology, Bush Estate Penicuik, EH26 0QB, Edinburgh, UK
| | - Andrea Piotti
- Institute of Biosciences and BioResources, National Research Council (CNR), via Madonna del Piano 10, 50019, Sesto, Fiorentino, Italy
| | | | - Nicolas Poinot
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), UEFP, 33610, Cestas, France
| | - Mehdi Pringarbe
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | - Luc Puzos
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), UEFP, 33610, Cestas, France
| | - Tanja Pyhäjärvi
- University of Oulu, Pentti Kaiteran katu 1, 90014, University of Oulu, Finland
| | - Annie Raffin
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), UEFP, 33610, Cestas, France
| | - José A Ramírez-Valiente
- Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain
| | - Christian Rellstab
- Swiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - Dourthe Remi
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), UEFP, 33610, Cestas, France
| | - Sebastian Richter
- Philipps University Marburg, Faculty of Biology, Plant Ecology and Geobotany, Karl-von-Frisch Strasse 8, 35043, Marburg, Germany
| | - Juan J Robledo-Arnuncio
- Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain
| | - Sergio San Segundo
- Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain
| | - Outi Savolainen
- University of Oulu, Pentti Kaiteran katu 1, 90014, University of Oulu, Finland
| | - Silvio Schueler
- Austrian Research Centre for Forests (BFW), Seckendorff-Gudent-Weg 8, 1131, Wien, Austria
| | - Volker Schneck
- Thünen Institute of Forest Genetics, Eberswalder Chaussee 3a, 15377, Waldsieversdorf, Germany
| | - Ivan Scotti
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | - Vladimir Semerikov
- Institute of Plant and Animal Ecology, Ural branch of RAS, 8 Marta St. 202, 620144, Ekaterinburg, Russia
| | - Lenka Slámová
- Swiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - Jørn Henrik Sønstebø
- Division of Forestry and Forest Resources, Norwegian Institute of Bioeconomy Research (NIBIO), P.O. Box 115, 1431, Ås, Norway
| | - Ilaria Spanu
- Institute of Biosciences and BioResources, National Research Council (CNR), via Madonna del Piano 10, 50019, Sesto, Fiorentino, Italy
| | - Jean Thevenet
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | - Mari Mette Tollefsrud
- Division of Forestry and Forest Resources, Norwegian Institute of Bioeconomy Research (NIBIO), P.O. Box 115, 1431, Ås, Norway
| | - Norbert Turion
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | - Giovanni Giuseppe Vendramin
- Institute of Biosciences and BioResources, National Research Council (CNR), via Madonna del Piano 10, 50019, Sesto, Fiorentino, Italy
| | - Marc Villar
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), ONF, BIOFORA, 45075, Orléans, France
| | - Georg von Arx
- Swiss Federal Research Institute WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | | | - Bruno Fady
- Institut National de Recherche en Agriculture, Alimentation et Environment (INRAE), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | - Tor Myking
- Division of Forestry and Forest Resources, Norwegian Institute of Bioeconomy Research (NIBIO), P.O. Box 115, 1431, Ås, Norway
| | - Fernando Valladares
- LINCGlobal, Department of Biogeography and Global Change, Museo Nacional de Ciencias Naturales, CSIC, Serrano 115 dpdo, 28006, Madrid, Spain
| | - Filippos A Aravanopoulos
- Aristotle University of Thessaloniki, School of Forestry and Natural Environment, Laboratory of Forest Genetics and Tree Improvement, 54124, Thessaloniki, Greece
| | - Stephen Cavers
- UK Centre for Ecology and Hydrology, Bush Estate Penicuik, EH26 0QB, Edinburgh, UK
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Martínez-Sancho E, Slámová L, Morganti S, Grefen C, Carvalho B, Dauphin B, Rellstab C, Gugerli F, Opgenoorth L, Heer K, Knutzen F, von Arx G, Valladares F, Cavers S, Fady B, Alía R, Aravanopoulos F, Avanzi C, Bagnoli F, Barbas E, Bastien C, Benavides R, Bernier F, Bodineau G, Bastias CC, Charpentier JP, Climent JM, Corréard M, Courdier F, Danusevicius D, Farsakoglou AM, García Del Barrio JM, Gilg O, González-Martínez SC, Gray A, Hartleitner C, Hurel A, Jouineau A, Kärkkäinen K, Kujala ST, Labriola M, Lascoux M, Lefebvre M, Lejeune V, Le-Provost G, Liesebach M, Malliarou E, Mariotte N, Matesanz S, Michotey C, Milesi P, Myking T, Notivol E, Pakull B, Piotti A, Plomion C, Pringarbe M, Pyhäjärvi T, Raffin A, Ramírez-Valiente JA, Ramskogler K, Robledo-Arnuncio JJ, Savolainen O, Schueler S, Semerikov V, Spanu I, Thévenet J, Tollefsrud MM, Turion N, Veisse D, Vendramin GG, Villar M, Westin J, Fonti P. Author Correction: The GenTree Dendroecological Collection, tree-ring and wood density data from seven tree species across Europe. Sci Data 2020; 7:114. [PMID: 32242054 PMCID: PMC7118108 DOI: 10.1038/s41597-020-0447-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Affiliation(s)
- Elisabet Martínez-Sancho
- Swiss Federal Institute for Forest Snow and Landscape Research WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland.
| | - Lenka Slámová
- Swiss Federal Institute for Forest Snow and Landscape Research WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - Sandro Morganti
- Swiss Federal Institute for Forest Snow and Landscape Research WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - Claudio Grefen
- Philipps-Universität Marburg, Department of Biology, Karl-von-Frisch-Strasse 8, 35043, Marburg, Germany
| | - Barbara Carvalho
- Department of Biogeography and Global Change, National Museum of Natural Sciences MNCN-CSIC, Serrano 115 dpdo, 28006, Madrid, Spain
| | - Benjamin Dauphin
- Swiss Federal Institute for Forest Snow and Landscape Research WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - Christian Rellstab
- Swiss Federal Institute for Forest Snow and Landscape Research WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - Felix Gugerli
- Swiss Federal Institute for Forest Snow and Landscape Research WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - Lars Opgenoorth
- Philipps-Universität Marburg, Department of Biology, Karl-von-Frisch-Strasse 8, 35043, Marburg, Germany
| | - Katrin Heer
- Philipps-Universität Marburg, Department of Biology, Karl-von-Frisch-Strasse 8, 35043, Marburg, Germany
| | - Florian Knutzen
- Bavarian Office for Forest Seeding and Planting - ASP, Forstamtsplatz 1, 83317, Teisendorf, Germany
| | - Georg von Arx
- Swiss Federal Institute for Forest Snow and Landscape Research WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - Fernando Valladares
- Department of Biogeography and Global Change, National Museum of Natural Sciences MNCN-CSIC, Serrano 115 dpdo, 28006, Madrid, Spain
| | - Stephen Cavers
- Centre for Ecology and Hydrology NERC, EH26 0QB, Edinburgh, United Kingdom
| | - Bruno Fady
- Institut National de la Recherche Agronomique (INRA), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | - Ricardo Alía
- Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain
| | - Filippos Aravanopoulos
- Laboratory of Forest Genetics and Tree Breeding, School of Forestry and Natural Environment, Aristotle University of Thessaloniki, 54124, Thessaloniki, Greece
| | - Camilla Avanzi
- Institute of Biosciences and BioResources, National Research Council (CNR), via Madonna del Piano 10, 50019, Sesto Fiorentino, Italy
| | - Francesca Bagnoli
- Institute of Biosciences and BioResources, National Research Council (CNR), via Madonna del Piano 10, 50019, Sesto Fiorentino, Italy
| | - Evangelos Barbas
- Laboratory of Forest Genetics and Tree Breeding, School of Forestry and Natural Environment, Aristotle University of Thessaloniki, 54124, Thessaloniki, Greece
| | - Catherine Bastien
- Institut National de la Recherche Agronomique (INRA), Avenue de la Pomme de pin 2163, 45075, Orléans, France
| | - Raquel Benavides
- Department of Biogeography and Global Change, National Museum of Natural Sciences MNCN-CSIC, Serrano 115 dpdo, 28006, Madrid, Spain
| | - Frédéric Bernier
- Institut National de la Recherche Agronomique (INRA), route d'Arcachon 69, 33610, Cestas, France
| | - Guillaume Bodineau
- Institut National de la Recherche Agronomique (INRA), Avenue de la Pomme de pin 2163, 45075, Orléans, France
| | - Cristina C Bastias
- Department of Biogeography and Global Change, National Museum of Natural Sciences MNCN-CSIC, Serrano 115 dpdo, 28006, Madrid, Spain
| | - Jean-Paul Charpentier
- Institut National de la Recherche Agronomique (INRA), Avenue de la Pomme de pin 2163, 45075, Orléans, France
| | - José M Climent
- Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain
| | - Marianne Corréard
- Institut National de la Recherche Agronomique (INRA), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | - Florence Courdier
- Institut National de la Recherche Agronomique (INRA), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | | | - Anna-Maria Farsakoglou
- Laboratory of Forest Genetics and Tree Breeding, School of Forestry and Natural Environment, Aristotle University of Thessaloniki, 54124, Thessaloniki, Greece
| | - José M García Del Barrio
- Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain
| | - Olivier Gilg
- Institut National de la Recherche Agronomique (INRA), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | | | - Alan Gray
- Centre for Ecology and Hydrology NERC, EH26 0QB, Edinburgh, United Kingdom
| | | | - Agathe Hurel
- Institut National de la Recherche Agronomique (INRA), route d'Arcachon 69, 33610, Cestas, France
| | - Arnaud Jouineau
- Institut National de la Recherche Agronomique (INRA), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | - Katri Kärkkäinen
- Natural Resources Institute Finland, University of Oulu, Paavo Havaksen tie 3, 90014, Oulu, Finland
| | - Sonja T Kujala
- Natural Resources Institute Finland, University of Oulu, Paavo Havaksen tie 3, 90014, Oulu, Finland
| | - Mariaceleste Labriola
- Institute of Biosciences and BioResources, National Research Council (CNR), via Madonna del Piano 10, 50019, Sesto Fiorentino, Italy
| | - Martin Lascoux
- Department of Ecology & Genetics, EBC, Uppsala University, Norbyvägen 18D, 75236, Uppsala, Sweden
| | - Marlène Lefebvre
- Institut National de la Recherche Agronomique (INRA), Avenue de la Pomme de pin 2163, 45075, Orléans, France
| | - Vincent Lejeune
- Institut National de la Recherche Agronomique (INRA), Avenue de la Pomme de pin 2163, 45075, Orléans, France
| | - Grégoire Le-Provost
- Institut National de la Recherche Agronomique (INRA), route d'Arcachon 69, 33610, Cestas, France
| | - Mirko Liesebach
- Thünen Institute of Forest Genetics, Sieker Landstr. 2, 22927, Grosshansdorf, Germany
| | - Ermioni Malliarou
- Laboratory of Forest Genetics and Tree Breeding, School of Forestry and Natural Environment, Aristotle University of Thessaloniki, 54124, Thessaloniki, Greece
| | - Nicolas Mariotte
- Institut National de la Recherche Agronomique (INRA), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | - Silvia Matesanz
- Área de Biodiversidad y Conservación, Universidad Rey Juan Carlos, Calle Tulipán s/n, 28933, Móstoles, Spain
| | - Célia Michotey
- Université Paris-Saclay, INRAE, URGI, 78026, Versailles, France
| | - Pascal Milesi
- Department of Ecology and Genetics, Evolutionary Biology Center, Science for Life Laboratory, Uppsala University, Norbyvägen, 18 D, 752 36, Uppsala, Sweden
| | - Tor Myking
- Division of Forestry and Forest Resources, Norwegian Institute of Bioeconomy Research (NIBIO), P.O. Box 115, 1431, Ås, Norway
| | - Eduardo Notivol
- Centro de Investigación y Tecnología Agroalimentaria de Aragón - Unidad de Recursos Forestales (CITA), Avda. Montañana 930, 50059, Zaragoza, Spain
| | - Birte Pakull
- Thünen Institute of Forest Genetics, Sieker Landstr. 2, 22927, Grosshansdorf, Germany
| | - Andrea Piotti
- Institute of Biosciences and BioResources, National Research Council (CNR), via Madonna del Piano 10, 50019, Sesto Fiorentino, Italy
| | - Christophe Plomion
- Institut National de la Recherche Agronomique (INRA), route d'Arcachon 69, 33610, Cestas, France
| | - Mehdi Pringarbe
- Institut National de la Recherche Agronomique (INRA), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | - Tanja Pyhäjärvi
- University of Oulu, Pentti Kaiteran katu 1, 90014, Oulu, Finland
| | - Annie Raffin
- Institut National de la Recherche Agronomique (INRA), route d'Arcachon 69, 33610, Cestas, France
| | - José A Ramírez-Valiente
- Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain
| | | | - Juan J Robledo-Arnuncio
- Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain
| | - Outi Savolainen
- University of Oulu, Pentti Kaiteran katu 1, 90014, Oulu, Finland
| | - Silvio Schueler
- Austrian Research Centre for Forests (BFW), Seckendorff-Gudent-Weg 8, 1131, Wien, Austria
| | - Vladimir Semerikov
- Institute of Plant and Animal Ecology, Ural branch of RAS, 8 Marta St. 202, 620144, Ekaterinburg, Russia
| | - Ilaria Spanu
- Institute of Biosciences and BioResources, National Research Council (CNR), via Madonna del Piano 10, 50019, Sesto Fiorentino, Italy
| | - Jean Thévenet
- Institut National de la Recherche Agronomique (INRA), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | - Mari Mette Tollefsrud
- Área de Biodiversidad y Conservación, Universidad Rey Juan Carlos, Calle Tulipán s/n, 28933, Móstoles, Spain
| | - Norbert Turion
- Institut National de la Recherche Agronomique (INRA), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | - Dominique Veisse
- Institut National de la Recherche Agronomique (INRA), Avenue de la Pomme de pin 2163, 45075, Orléans, France
| | - Giovanni Giuseppe Vendramin
- Institute of Biosciences and BioResources, National Research Council (CNR), via Madonna del Piano 10, 50019, Sesto Fiorentino, Italy
| | - Marc Villar
- Institut National de la Recherche Agronomique (INRA), Avenue de la Pomme de pin 2163, 45075, Orléans, France
| | | | - Patrick Fonti
- Swiss Federal Institute for Forest Snow and Landscape Research WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
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4
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Martínez-Sancho E, Slámová L, Morganti S, Grefen C, Carvalho B, Dauphin B, Rellstab C, Gugerli F, Opgenoorth L, Heer K, Knutzen F, von Arx G, Valladares F, Cavers S, Fady B, Alía R, Aravanopoulos F, Avanzi C, Bagnoli F, Barbas E, Bastien C, Benavides R, Bernier F, Bodineau G, Bastias CC, Charpentier JP, Climent JM, Corréard M, Courdier F, Danusevicius D, Farsakoglou AM, Del Barrio JMG, Gilg O, González-Martínez SC, Gray A, Hartleitner C, Hurel A, Jouineau A, Kärkkäinen K, Kujala ST, Labriola M, Lascoux M, Lefebvre M, Lejeune V, Le-Provost G, Liesebach M, Malliarou E, Mariotte N, Matesanz S, Michotey C, Milesi P, Myking T, Notivol E, Pakull B, Piotti A, Plomion C, Pringarbe M, Pyhäjärvi T, Raffin A, Ramírez-Valiente JA, Ramskogler K, Robledo-Arnuncio JJ, Savolainen O, Schueler S, Semerikov V, Spanu I, Thévenet J, Mette Tollefsrud M, Turion N, Veisse D, Vendramin GG, Villar M, Westin J, Fonti P. The GenTree Dendroecological Collection, tree-ring and wood density data from seven tree species across Europe. Sci Data 2020; 7:1. [PMID: 31896794 PMCID: PMC6940356 DOI: 10.1038/s41597-019-0340-y] [Citation(s) in RCA: 192] [Impact Index Per Article: 48.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2019] [Accepted: 11/21/2019] [Indexed: 11/12/2022] Open
Abstract
The dataset presented here was collected by the GenTree project (EU-Horizon 2020), which aims to improve the use of forest genetic resources across Europe by better understanding how trees adapt to their local environment. This dataset of individual tree-core characteristics including ring-width series and whole-core wood density was collected for seven ecologically and economically important European tree species: silver birch (Betula pendula), European beech (Fagus sylvatica), Norway spruce (Picea abies), European black poplar (Populus nigra), maritime pine (Pinus pinaster), Scots pine (Pinus sylvestris), and sessile oak (Quercus petraea). Tree-ring width measurements were obtained from 3600 trees in 142 populations and whole-core wood density was measured for 3098 trees in 125 populations. This dataset covers most of the geographical and climatic range occupied by the selected species. The potential use of it will be highly valuable for assessing ecological and evolutionary responses to environmental conditions as well as for model development and parameterization, to predict adaptability under climate change scenarios.
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Affiliation(s)
- Elisabet Martínez-Sancho
- Swiss Federal Institute for Forest Snow and Landscape Research WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland.
| | - Lenka Slámová
- Swiss Federal Institute for Forest Snow and Landscape Research WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - Sandro Morganti
- Swiss Federal Institute for Forest Snow and Landscape Research WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - Claudio Grefen
- Philipps-Universität Marburg, Department of Biology, Karl-von-Frisch-Strasse 8, 35043, Marburg, Germany
| | - Barbara Carvalho
- Department of Biogeography and Global Change, National Museum of Natural Sciences MNCN-CSIC, Serrano 115 dpdo, 28006, Madrid, Spain
| | - Benjamin Dauphin
- Swiss Federal Institute for Forest Snow and Landscape Research WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - Christian Rellstab
- Swiss Federal Institute for Forest Snow and Landscape Research WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - Felix Gugerli
- Swiss Federal Institute for Forest Snow and Landscape Research WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - Lars Opgenoorth
- Philipps-Universität Marburg, Department of Biology, Karl-von-Frisch-Strasse 8, 35043, Marburg, Germany
| | - Katrin Heer
- Philipps-Universität Marburg, Department of Biology, Karl-von-Frisch-Strasse 8, 35043, Marburg, Germany
| | - Florian Knutzen
- Bavarian Office for Forest Seeding and Planting - ASP, Forstamtsplatz 1, 83317, Teisendorf, Germany
| | - Georg von Arx
- Swiss Federal Institute for Forest Snow and Landscape Research WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - Fernando Valladares
- Department of Biogeography and Global Change, National Museum of Natural Sciences MNCN-CSIC, Serrano 115 dpdo, 28006, Madrid, Spain
| | - Stephen Cavers
- Centre for Ecology and Hydrology NERC, EH26 0QB, Edinburgh, United Kingdom
| | - Bruno Fady
- Institut National de la Recherche Agronomique (INRA), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | - Ricardo Alía
- Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain
| | - Filippos Aravanopoulos
- Laboratory of Forest Genetics and Tree Breeding, School of Forestry and Natural Environment, Aristotle University of Thessaloniki, 54124, Thessaloniki, Greece
| | - Camilla Avanzi
- Institute of Biosciences and BioResources, National Research Council (CNR), via Madonna del Piano 10, 50019, Sesto Fiorentino, Italy
| | - Francesca Bagnoli
- Institute of Biosciences and BioResources, National Research Council (CNR), via Madonna del Piano 10, 50019, Sesto Fiorentino, Italy
| | - Evangelos Barbas
- Laboratory of Forest Genetics and Tree Breeding, School of Forestry and Natural Environment, Aristotle University of Thessaloniki, 54124, Thessaloniki, Greece
| | - Catherine Bastien
- Institut National de la Recherche Agronomique (INRA), Avenue de la Pomme de pin 2163, 45075, Orléans, France
| | - Raquel Benavides
- Department of Biogeography and Global Change, National Museum of Natural Sciences MNCN-CSIC, Serrano 115 dpdo, 28006, Madrid, Spain
| | - Frédéric Bernier
- Institut National de la Recherche Agronomique (INRA), route d'Arcachon 69, 33610, Cestas, France
| | - Guillaume Bodineau
- Institut National de la Recherche Agronomique (INRA), Avenue de la Pomme de pin 2163, 45075, Orléans, France
| | - Cristina C Bastias
- Department of Biogeography and Global Change, National Museum of Natural Sciences MNCN-CSIC, Serrano 115 dpdo, 28006, Madrid, Spain
| | - Jean-Paul Charpentier
- Institut National de la Recherche Agronomique (INRA), Avenue de la Pomme de pin 2163, 45075, Orléans, France
| | - José M Climent
- Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain
| | - Marianne Corréard
- Institut National de la Recherche Agronomique (INRA), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | - Florence Courdier
- Institut National de la Recherche Agronomique (INRA), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | | | - Anna-Maria Farsakoglou
- Laboratory of Forest Genetics and Tree Breeding, School of Forestry and Natural Environment, Aristotle University of Thessaloniki, 54124, Thessaloniki, Greece
| | - José M García Del Barrio
- Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain
| | - Olivier Gilg
- Institut National de la Recherche Agronomique (INRA), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | | | - Alan Gray
- Centre for Ecology and Hydrology NERC, EH26 0QB, Edinburgh, United Kingdom
| | | | - Agathe Hurel
- Institut National de la Recherche Agronomique (INRA), route d'Arcachon 69, 33610, Cestas, France
| | - Arnaud Jouineau
- Institut National de la Recherche Agronomique (INRA), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | - Katri Kärkkäinen
- Natural Resources Institute Finland, University of Oulu, Paavo Havaksen tie 3, 90014, Oulu, Finland
| | - Sonja T Kujala
- Natural Resources Institute Finland, University of Oulu, Paavo Havaksen tie 3, 90014, Oulu, Finland
| | - Mariaceleste Labriola
- Institute of Biosciences and BioResources, National Research Council (CNR), via Madonna del Piano 10, 50019, Sesto Fiorentino, Italy
| | - Martin Lascoux
- Department of Ecology & Genetics, EBC, Uppsala University, Norbyvägen 18D, 75236, Uppsala, Sweden
| | - Marlène Lefebvre
- Institut National de la Recherche Agronomique (INRA), Avenue de la Pomme de pin 2163, 45075, Orléans, France
| | - Vincent Lejeune
- Institut National de la Recherche Agronomique (INRA), Avenue de la Pomme de pin 2163, 45075, Orléans, France
| | - Grégoire Le-Provost
- Institut National de la Recherche Agronomique (INRA), route d'Arcachon 69, 33610, Cestas, France
| | - Mirko Liesebach
- Thünen Institute of Forest Genetics, Sieker Landstr. 2, 22927, Grosshansdorf, Germany
| | - Ermioni Malliarou
- Laboratory of Forest Genetics and Tree Breeding, School of Forestry and Natural Environment, Aristotle University of Thessaloniki, 54124, Thessaloniki, Greece
| | - Nicolas Mariotte
- Institut National de la Recherche Agronomique (INRA), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | - Silvia Matesanz
- Área de Biodiversidad y Conservación, Universidad Rey Juan Carlos, Calle Tulipán s/n, 28933, Móstoles, Spain
| | - Célia Michotey
- Université Paris-Saclay, INRAE, URGI, 78026, Versailles, France
| | - Pascal Milesi
- Department of Ecology and Genetics, Evolutionary Biology Center, Science for Life Laboratory, Uppsala University, Norbyvägen 18 D, 752 36, Uppsala, Sweden
| | - Tor Myking
- Division of Forestry and Forest Resources, Norwegian Institute of Bioeconomy Research (NIBIO), P.O. Box 115, 1431, Ås, Norway
| | - Eduardo Notivol
- Centro de Investigación y Tecnología Agroalimentaria de Aragón - Unidad de Recursos Forestales (CITA), Avda. Montañana 930, 50059, Zaragoza, Spain
| | - Birte Pakull
- Thünen Institute of Forest Genetics, Sieker Landstr. 2, 22927, Grosshansdorf, Germany
| | - Andrea Piotti
- Institute of Biosciences and BioResources, National Research Council (CNR), via Madonna del Piano 10, 50019, Sesto Fiorentino, Italy
| | - Christophe Plomion
- Institut National de la Recherche Agronomique (INRA), route d'Arcachon 69, 33610, Cestas, France
| | - Mehdi Pringarbe
- Institut National de la Recherche Agronomique (INRA), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | - Tanja Pyhäjärvi
- University of Oulu, Pentti Kaiteran katu 1, 90014, Oulu, Finland
| | - Annie Raffin
- Institut National de la Recherche Agronomique (INRA), route d'Arcachon 69, 33610, Cestas, France
| | - José A Ramírez-Valiente
- Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain
| | | | - Juan J Robledo-Arnuncio
- Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria - Centro de Investigación Forestal (INIA-CIFOR), Ctra. de la Coruña km 7.5, 28040, Madrid, Spain
| | - Outi Savolainen
- University of Oulu, Pentti Kaiteran katu 1, 90014, Oulu, Finland
| | - Silvio Schueler
- Austrian Research Centre for Forests (BFW), Seckendorff-Gudent-Weg 8, 1131, Wien, Austria
| | - Vladimir Semerikov
- Institute of Plant and Animal Ecology, Ural branch of RAS, 8 Marta St. 202, 620144, Ekaterinburg, Russia
| | - Ilaria Spanu
- Institute of Biosciences and BioResources, National Research Council (CNR), via Madonna del Piano 10, 50019, Sesto Fiorentino, Italy
| | - Jean Thévenet
- Institut National de la Recherche Agronomique (INRA), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | - Mari Mette Tollefsrud
- Área de Biodiversidad y Conservación, Universidad Rey Juan Carlos, Calle Tulipán s/n, 28933, Móstoles, Spain
| | - Norbert Turion
- Institut National de la Recherche Agronomique (INRA), Domaine Saint Paul, Site Agroparc, 84914, Avignon, France
| | - Dominique Veisse
- Institut National de la Recherche Agronomique (INRA), Avenue de la Pomme de pin 2163, 45075, Orléans, France
| | - Giovanni Giuseppe Vendramin
- Institute of Biosciences and BioResources, National Research Council (CNR), via Madonna del Piano 10, 50019, Sesto Fiorentino, Italy
| | - Marc Villar
- Institut National de la Recherche Agronomique (INRA), Avenue de la Pomme de pin 2163, 45075, Orléans, France
| | | | - Patrick Fonti
- Swiss Federal Institute for Forest Snow and Landscape Research WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
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5
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Tsuda Y, Semerikov V, Sebastiani F, Vendramin GG, Lascoux M. Multispecies genetic structure and hybridization in theBetulagenus across Eurasia. Mol Ecol 2016; 26:589-605. [DOI: 10.1111/mec.13885] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2015] [Accepted: 09/19/2016] [Indexed: 01/18/2023]
Affiliation(s)
- Yoshiaki Tsuda
- Department of Ecology and Genetics; Evolutionary Biology Centre; Science for Life Laboratory; Uppsala University; Norbyvägen 18D 75236 Uppsala Sweden
- Institute of Biosciences and Bioresources; Division of Florence; National Research Council; Via Madonna del Piano 10 50019 Sesto Fiorentino (Firenze) Italy
| | - Vladimir Semerikov
- Institute of Plant and Animal Ecology; Ural Branch of Russian Academy of Science; Ekaterinburg 620144 Russia
| | - Federico Sebastiani
- Institute of Biosciences and Bioresources; Division of Florence; National Research Council; Via Madonna del Piano 10 50019 Sesto Fiorentino (Firenze) Italy
| | - Giovanni Giuseppe Vendramin
- Institute of Biosciences and Bioresources; Division of Florence; National Research Council; Via Madonna del Piano 10 50019 Sesto Fiorentino (Firenze) Italy
| | - Martin Lascoux
- Department of Ecology and Genetics; Evolutionary Biology Centre; Science for Life Laboratory; Uppsala University; Norbyvägen 18D 75236 Uppsala Sweden
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6
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Tsuda Y, Chen J, Stocks M, Källman T, Sønstebø JH, Parducci L, Semerikov V, Sperisen C, Politov D, Ronkainen T, Väliranta M, Vendramin GG, Tollefsrud MM, Lascoux M. The extent and meaning of hybridization and introgression between Siberian spruce (Picea obovata) and Norway spruce (Picea abies): cryptic refugia as stepping stones to the west? Mol Ecol 2016; 25:2773-89. [PMID: 27087633 DOI: 10.1111/mec.13654] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2015] [Revised: 02/23/2016] [Accepted: 04/09/2016] [Indexed: 01/17/2023]
Abstract
Boreal species were repeatedly exposed to ice ages and went through cycles of contraction and expansion while sister species alternated periods of contact and isolation. The resulting genetic structure is consequently complex, and demographic inferences are intrinsically challenging. The range of Norway spruce (Picea abies) and Siberian spruce (Picea obovata) covers most of northern Eurasia; yet their geographical limits and histories remain poorly understood. To delineate the hybrid zone between the two species and reconstruct their joint demographic history, we analysed variation at nuclear SSR and mitochondrial DNA in 102 and 88 populations, respectively. The dynamics of the hybrid zone was analysed with approximate Bayesian computation (ABC) followed by posterior predictive structure plot reconstruction and the presence of barriers across the range tested with estimated effective migration surfaces. To estimate the divergence time between the two species, nuclear sequences from two well-separated populations of each species were analysed with ABC. Two main barriers divide the range of the two species: one corresponds to the hybrid zone between them, and the other separates the southern and northern domains of Norway spruce. The hybrid zone is centred on the Urals, but the genetic impact of Siberian spruce extends further west. The joint distribution of mitochondrial and nuclear variation indicates an introgression of mitochondrial DNA from Norway spruce into Siberian spruce. Overall, our data reveal a demographic history where the two species interacted frequently and where migrants originating from the Urals and the West Siberian Plain recolonized northern Russia and Scandinavia using scattered refugial populations of Norway spruce as stepping stones towards the west.
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Affiliation(s)
- Yoshiaki Tsuda
- Department of Ecology and Genetics, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, 75236, Uppsala, Sweden.,CNR, Institute of Biosciences and Bioresources, Via Madonna del Piano 10, 50019, Sesto Fiorentino, Firenze, Italy
| | - Jun Chen
- Department of Ecology and Genetics, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, 75236, Uppsala, Sweden
| | - Michael Stocks
- Department of Ecology and Genetics, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, 75236, Uppsala, Sweden
| | - Thomas Källman
- Department of Ecology and Genetics, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, 75236, Uppsala, Sweden
| | | | - Laura Parducci
- Department of Ecology and Genetics, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, 75236, Uppsala, Sweden
| | - Vladimir Semerikov
- Urals Division of the Russian Academy of Sciences, Institute of Plant and Animal Ecology, 8 Marta Str., 202, 620144, Ekaterinburg, Russia
| | - Christoph Sperisen
- Swiss Federal Research Institute for Forest, Snow and Landscape Research (WSL), Zürcherstrasse 111, CH-8903, Birmendsdorf, Switzerland
| | - Dmitry Politov
- Vavilov Institute of General Genetics, Russian Academy of Sciences, Gubkin str. 3, 119991, Moscow, Russia
| | - Tiina Ronkainen
- Environmental Change Research Unit (ECRU), Department of Environmental Sciences, University of Helsinki, PO Box 65, FI-00014, Helsinki, Finland
| | - Minna Väliranta
- Environmental Change Research Unit (ECRU), Department of Environmental Sciences, University of Helsinki, PO Box 65, FI-00014, Helsinki, Finland
| | - Giovanni Giuseppe Vendramin
- CNR, Institute of Biosciences and Bioresources, Via Madonna del Piano 10, 50019, Sesto Fiorentino, Firenze, Italy
| | | | - Martin Lascoux
- Department of Ecology and Genetics, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, 75236, Uppsala, Sweden
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Abstract
In the present study, we have used PCR-RFLP markers to investigate the chloroplast DNA variation in 24 European populations of Salix caprea L. A subset of these populations has also been analysed with chloroplast microsatellites. The main feature of both markers is the absence of a clear geographic structure (G(ST(PCR-RFLP))=0.090, G(ST(microsatellites))=-0.017) and high levels of variation within populations. This lack of phylogeographic structure in S. caprea is suggested to be the consequence of the joint action of several factors: (i) presence of intermediate latitude refugia with large population sizes during the last glacial maximum, (ii) a high speed of recolonisation and dispersal ability, (iii) a high mutation rate and (iv) extensive hybridisation with other willow species. In addition to the S. caprea samples, a limited number of individuals from several other Salix species were also analysed with PCR-RFLP: S. cinerea, S. aurita, S. purpurea, S. atrocinerea, S. appendiculata, S. elaeagnos, S. fragilis and S. alba. Many of the haplotypes found in Salix caprea were also detected in S. cinerea, S. aurita, S. purpurea, S. atrocinerea and/ or S. appendiculata but not in S. alba, S. elaeagnos or S. fragilis. Our data suggest that hybridisation and gene flow have occurred within these two groups but not between them.
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Affiliation(s)
- A E Palmé
- Department of Conservation Biology and Genetics, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18 D, 752 36 Uppsala, Sweden.
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8
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Semerikov V, Lagercrantz U, Tsarouhas V, Rönnberg-Wästljung A, Alström-Rapaport C, Lascoux M. Genetic mapping of sex-linked markers in Salix viminalis L. Heredity (Edinb) 2003; 91:293-9. [PMID: 12939631 DOI: 10.1038/sj.hdy.6800327] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Abstract
A total of 88 selective primer combinations were screened using bulked males and females sampled from four families of Salix viminalis. A total of more than 1000 polymorphic fragments was obtained, of which only four cosegregated with sex. These four sex-linked markers were subsequently scored in individuals that were used for bulked sample preparation in additional individuals of the same families, and in individuals in other families. A pair of primers that amplified the sex-linked fragments was constructed from one of the sex-linked amplified fragment length polymorphism (AFLP) fragments. In hybridization of Southern blot filters with the sex-linked DNA fragments, the band was present in females and absent in males, but the opposite pattern of band segregation (a band found in males and no band in females) was never observed in either the AFLP or RFLP experiments. Two of the sex-linked markers were placed on a linkage map. They both map at the same location in a linkage group comprising other markers not segregating with sex. Our data suggest that a single locus governs the sex determination and that nonrecombining sex chromosomes are absent in S. viminalis. A close association was found between skewed sex ratio and segregation distortion at this locus.
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Affiliation(s)
- V Semerikov
- Department of Conservation Biology and Genetics, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18 D, 75236 Uppsala, Sweden
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