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Li S, Wang Z, Li Z, Xie S, Shan X, Cai Z. Intraosseous schwannoma of the mandible: new case series, literature update, and proposal of a classification. Int J Oral Maxillofac Surg 2024; 53:205-211. [PMID: 37716827 DOI: 10.1016/j.ijom.2023.08.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2023] [Revised: 08/15/2023] [Accepted: 08/29/2023] [Indexed: 09/18/2023]
Abstract
Intraosseous schwannoma of the mandible is rare, with diagnostic and therapeutic challenges. The aims of this study were to report new cases of intraosseous schwannoma of the mandible and to propose a clinical classification, providing suggestions for treatment methods. The cases of 13 patients treated at the authors' hospital and 86 cases reported previously in the literature were reviewed. The most common clinical feature was facial swelling (60/93). The rate of cortical thinning or expansion was 44.8% (43/96); widening of the inferior alveolar nerve canal on radiographs was observed in 15 patients.
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Affiliation(s)
- S Li
- Department of Oral and Maxillofacial Surgery, Peking University School and Hospital of Stomatology & National Center of Stomatology & National Clinical Research Center for Oral Diseases & National Engineering Research Center of Oral Biomaterials and Digital Medical Devices, Haidian District, Beijing, PR China
| | - Z Wang
- Department of Oral and Maxillofacial Surgery, Peking University School and Hospital of Stomatology & National Center of Stomatology & National Clinical Research Center for Oral Diseases & National Engineering Research Center of Oral Biomaterials and Digital Medical Devices, Haidian District, Beijing, PR China
| | - Z Li
- Department of Oral and Maxillofacial Surgery, Peking University School and Hospital of Stomatology & National Center of Stomatology & National Clinical Research Center for Oral Diseases & National Engineering Research Center of Oral Biomaterials and Digital Medical Devices, Haidian District, Beijing, PR China
| | - S Xie
- Department of Oral and Maxillofacial Surgery, Peking University School and Hospital of Stomatology & National Center of Stomatology & National Clinical Research Center for Oral Diseases & National Engineering Research Center of Oral Biomaterials and Digital Medical Devices, Haidian District, Beijing, PR China
| | - X Shan
- Department of Oral and Maxillofacial Surgery, Peking University School and Hospital of Stomatology & National Center of Stomatology & National Clinical Research Center for Oral Diseases & National Engineering Research Center of Oral Biomaterials and Digital Medical Devices, Haidian District, Beijing, PR China
| | - Z Cai
- Department of Oral and Maxillofacial Surgery, Peking University School and Hospital of Stomatology & National Center of Stomatology & National Clinical Research Center for Oral Diseases & National Engineering Research Center of Oral Biomaterials and Digital Medical Devices, Haidian District, Beijing, PR China.
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2
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Yuan R, Cao Y, Zhu X, Shan X, Wang B, Wang H, Chen S, Liu J. Liquid Metal Memory. Adv Mater 2024; 36:e2309182. [PMID: 38037474 DOI: 10.1002/adma.202309182] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2023] [Revised: 11/03/2023] [Indexed: 12/02/2023]
Abstract
Storage systems are vital components of electronic devices, while significant challenges persist in achieving flexible memory due to the limitations of existing storage methodologies. Inspired by the polarization and depolarization mechanisms in the human brain, here a novel class of storage principles is proposed and achieve a fully flexible memory through introducing the oxidation and deoxidation behaviors of liquid metals. Specifically, reversible electrochemical oxidation is utilized to modulate the overall conductivity of the target liquid metals, creating a substantial 11-order resistance difference for binary data storage. To obtain the best storage performance, systematic optimizations of multiple parameters are conducted. Conceptual experiments demonstrate the memory's stability under extreme deformations (100% stretching, 180° bending, 360° twisting). Further tests reveal that the memory performs better when its unit size gets smaller, warranting superior integrability. Finally, a complete storage system achieves remarkable performance metrics, including rapid storage speed (>33 Hz), long data retention capacity (>43200 s), and stable repeatable operation (>3500 cycles). This groundbreaking method not only overcomes the inherent rigidity limitations of existing electronic storage units but also opens new possibilities for innovating neuromorphic devices, offering fundamental and practical avenues for future applications in soft robotics, wearable electronics, and bio-inspired artificial intelligence systems.
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Affiliation(s)
- Ruizhi Yuan
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, 100084, China
| | - Yingjie Cao
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, 100084, China
| | - Xiyu Zhu
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, 100084, China
| | - Xiaohui Shan
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, 100084, China
| | - Bo Wang
- School of Biological Science and Medical Engineering, Beihang University, Beijing, 100083, China
| | - Hongzhang Wang
- Center of Double Helix, Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen, 518055, China
| | - Sen Chen
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, 100084, China
- Institute for Frontier Science, Nanjing University of Aeronautics and Astronautics, Nanjing, 210016, China
| | - Jing Liu
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, 100084, China
- Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Beijing, 100190, China
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3
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Zhang M, Jiang Y, Dong H, Shan X, Tian J, Sun M, Ma F, Ren C, Yuan Y. Transcriptomic response for revealing the molecular mechanism of oat flowering under different photoperiods. Front Plant Sci 2023; 14:1279107. [PMID: 38023932 PMCID: PMC10644674 DOI: 10.3389/fpls.2023.1279107] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/17/2023] [Accepted: 10/19/2023] [Indexed: 12/01/2023]
Abstract
Proper flowering is essential for the reproduction of all kinds of plants. Oat is an important cereal and forage crop; however, its cultivation is limited because it is a long-day plant. The molecular mechanism by which oats respond to different photoperiods is still unclear. In this study, oat plants were treated under long-day and short-day photoperiods for 10 days, 15 days, 20 days, 25 days, 30 days, 40 days and 50 days, respectively. Under the long-day treatment, oats entered the reproductive stage, while oats remained vegetative under the short-day treatment. Forty-two samples were subjected to RNA-Seq to compare the gene expression patterns of oat under long- and short-day photoperiods. A total of 634-5,974 differentially expressed genes (DEGs) were identified for each time point, while the floral organ primordium differentiation stage showed the largest number of DEGs, and the spikelet differentiation stage showed the smallest number. Gene Ontology (GO) analysis showed that the plant hormone signaling transduction and hormone metabolism processes significantly changed in the photoperiod regulation of flowering time in oat. Moreover, Kyoto Encyclopedia of Genes and Genomes (KEGG) and Mapman analysis revealed that the DEGs were mainly concentrated in the circadian rhythm, protein antenna pathways and sucrose metabolism process. Additionally, transcription factors (TFs) involved in various flowering pathways were explored. Combining all this information, we established a molecular model of oat flowering induced by a long-day photoperiod. Taken together, the long-day photoperiod has a large effect at both the morphological and transcriptomic levels, and these responses ultimately promote flowering in oat. Our findings expand the understanding of oat as a long-day plant, and the explored genes could be used in molecular breeding to help break its cultivation limitations in the future.
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Affiliation(s)
- Man Zhang
- Jilin Engineering Research Center for Crop Biotechnology Breeding, College of Plant Science, Jilin University, Changchun, China
- Key Laboratory of Biotechnology of Jinlin Province, Baicheng Academy of Agricultural Science, Baicheng, China
| | - Yuan Jiang
- Jilin Engineering Research Center for Crop Biotechnology Breeding, College of Plant Science, Jilin University, Changchun, China
| | - Haixiao Dong
- Jilin Engineering Research Center for Crop Biotechnology Breeding, College of Plant Science, Jilin University, Changchun, China
| | - Xiaohui Shan
- Jilin Engineering Research Center for Crop Biotechnology Breeding, College of Plant Science, Jilin University, Changchun, China
| | - Juan Tian
- Key Laboratory of Biotechnology of Jinlin Province, Baicheng Academy of Agricultural Science, Baicheng, China
| | - Moke Sun
- Key Laboratory of Biotechnology of Jinlin Province, Baicheng Academy of Agricultural Science, Baicheng, China
| | - Feiyue Ma
- Key Laboratory of Biotechnology of Jinlin Province, Baicheng Academy of Agricultural Science, Baicheng, China
| | - Changzhong Ren
- Key Laboratory of Biotechnology of Jinlin Province, Baicheng Academy of Agricultural Science, Baicheng, China
| | - Yaping Yuan
- Jilin Engineering Research Center for Crop Biotechnology Breeding, College of Plant Science, Jilin University, Changchun, China
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Wang B, Chen S, Sun X, Shan X, Zhu X, Yuan B, Wang H, Zhou G, Liu J. A Photothermally Enhanced Vancomycin-Coated Liquid Metal Antimicrobial Agent with Targeting Capability. Bioengineering (Basel) 2023; 10:748. [PMID: 37508775 PMCID: PMC10376194 DOI: 10.3390/bioengineering10070748] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Revised: 06/14/2023] [Accepted: 06/19/2023] [Indexed: 07/30/2023] Open
Abstract
The targeted antimicrobial efficacy of Vancomycin decreases significantly over time due to bacterial resistance, whereas Ga-based liquid metals, which are less prone to inducing bacterial resistance, face challenges in achieving targeted antimicrobial effects. To tackle these issues, a highly efficient antimicrobial agent with targeting properties has been developed by combining Ga-based liquid metals and Vancomycin. Moreover, the performance of this antimicrobial agent can be greatly enhanced through the use of near-infrared light. Microscopic observations reveal that Vancomycin can be effectively encapsulated on the surface of liquid metal, facilitated by the presence of the oxide layer. The resulting core–shell structured antimicrobial agent demonstrates notable targeted antimicrobial effects against S. aureus. Antibacterial tests indicate that Vancomycin effectively improves the antibacterial properties of pure liquid metal. Additionally, this study unveils the excellent photothermal conversion capabilities of liquid metal, enabling the antimicrobial agent exposed to 808nm near-infrared light to exhibit significantly strengthened bactericidal performance. In this scenario, the antimicrobial agent can achieve nearly 100% effectiveness. This work enriches the investigation of integrating Ga-based antimicrobial agents with traditional antibiotics, showcasing promising antibacterial effects and establishing the groundwork for subsequent clinical applications.
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Affiliation(s)
- Bo Wang
- School of Biological Science and Medical Engineering, Beihang University, Beijing 100083, China; (B.W.)
| | - Sen Chen
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Xuyang Sun
- School of Biological Science and Medical Engineering, Beihang University, Beijing 100083, China; (B.W.)
| | - Xiaohui Shan
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Xiyu Zhu
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Bo Yuan
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Hongzhang Wang
- Center of Double Helix, Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China
- Beijing Key Lab of Cryo-Biomedical Engineering, Technical Institute of Physics and Chemistry Chinese Academy of Sciences, Beijing 100190, China
| | - Gang Zhou
- School of Biological Science and Medical Engineering, Beihang University, Beijing 100083, China; (B.W.)
| | - Jing Liu
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
- Beijing Key Lab of Cryo-Biomedical Engineering, Technical Institute of Physics and Chemistry Chinese Academy of Sciences, Beijing 100190, China
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Chen S, Jiang M, Wang B, Zhu X, Shan X, Liu J. In Situ Fabricated Liquid Metal Capacitors for Plant Sensing. Biosensors (Basel) 2023; 13:603. [PMID: 37366968 DOI: 10.3390/bios13060603] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2023] [Revised: 05/25/2023] [Accepted: 05/31/2023] [Indexed: 06/28/2023]
Abstract
Capacitive sensors are essential to promoting modernization and intelligence in agriculture. With the continuous advancement of this sensor technology, the demand for materials with high conductivity and flexibility is rapidly increasing. Herein, we introduce liquid metal as a solution for the in-site fabrication of high-performance capacitive sensors for plant sensing. As a comparison, three pathways have been proposed for the preparation of flexible capacitors inside plants, as well as on their surfaces. Specifically, concealed capacitors can be constructed by directly injecting liquid metal into the plant cavity. Printable capacitors are prepared via printing Cu-doped liquid metal with better adhesion on plant surfaces. A composite liquid metal-based capacitive sensor is achieved by printing liquid metal on the plant surface and injecting it into the interior of the plant. While each method has limitations, the composite liquid metal-based capacitive sensor provides an optimal trade-off between signal capture capability and operability. As a result, this composite capacitor is chosen as a sensor for monitoring water changes within plants and demonstrates the desired sensing performance, making it a promising technology for monitoring plant physiology.
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Affiliation(s)
- Sen Chen
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Muzhi Jiang
- Beijing Key Lab of Cryo-Biomedical Engineering and Key Lab of Cryogenics, Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Bo Wang
- School of Biological Science and Medical Engineering, Beihang University, Beijing 100083, China
| | - Xiyu Zhu
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Xiaohui Shan
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Jing Liu
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
- Beijing Key Lab of Cryo-Biomedical Engineering and Key Lab of Cryogenics, Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Beijing 100190, China
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6
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Jiang Y, Su S, Chen H, Li S, Shan X, Li H, Liu H, Dong H, Yuan Y. Transcriptome analysis of drought-responsive and drought-tolerant mechanisms in maize leaves under drought stress. Physiol Plant 2023; 175:e13875. [PMID: 36775906 DOI: 10.1111/ppl.13875] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/20/2022] [Revised: 01/18/2023] [Accepted: 02/08/2023] [Indexed: 06/18/2023]
Abstract
Maize is a major crop essential for food and feed, but its production is threatened by various biotic and abiotic stresses. Drought is one of the most common abiotic stresses, causing severe crop yield reduction. Although several studies have been devoted to selecting drought-tolerant maize lines and detecting the drought-responsive mechanism of maize, the transcriptomic differences between drought-tolerant and drought-susceptible maize lines are still largely unknown. In our study, RNA-seq was performed on leaves of the drought-tolerant line W9706 and the drought-susceptible line B73 after drought treatment. We identified 3147 differentially expressed genes (DEGs) between these two lines. The upregulated DEGs in W9706 were enriched in specific processes, including ABA signaling, wax biosynthesis, CHO metabolism, signal transduction and brassinosteroid biosynthesis-related processes, while the downregulated DEGs were enriched in specific processes, such as stomatal movement. Altogether, transcriptomic analysis suggests that the different drought resistances were correlated with the differential expression of genes, while the drought tolerance of W9706 is due to the more rapid response to stimulus, higher water retention capacity and stable cellular environment under water deficit conditions.
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Affiliation(s)
- Yuan Jiang
- Jilin Engineering Research Center for Crop Biotechnology Breeding, College of Plant Science, Jilin University, Changchun, China
| | - Shengzhong Su
- Jilin Engineering Research Center for Crop Biotechnology Breeding, College of Plant Science, Jilin University, Changchun, China
| | - Hao Chen
- Jilin Engineering Research Center for Crop Biotechnology Breeding, College of Plant Science, Jilin University, Changchun, China
| | - Shipeng Li
- Jilin Engineering Research Center for Crop Biotechnology Breeding, College of Plant Science, Jilin University, Changchun, China
| | - Xiaohui Shan
- Jilin Engineering Research Center for Crop Biotechnology Breeding, College of Plant Science, Jilin University, Changchun, China
| | - He Li
- Jilin Engineering Research Center for Crop Biotechnology Breeding, College of Plant Science, Jilin University, Changchun, China
| | - Hongkui Liu
- Jilin Engineering Research Center for Crop Biotechnology Breeding, College of Plant Science, Jilin University, Changchun, China
| | - Haixiao Dong
- Jilin Engineering Research Center for Crop Biotechnology Breeding, College of Plant Science, Jilin University, Changchun, China
| | - Yaping Yuan
- Jilin Engineering Research Center for Crop Biotechnology Breeding, College of Plant Science, Jilin University, Changchun, China
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7
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Lin X, Bo ZH, Lv W, Zhou Z, Huang Q, Du W, Shan X, Fu R, Jin X, Yang H, Su Y, Jiang K, Guo Y, Wang H, Xu F, Huang G. Miniaturized microfluidic-based nucleic acid analyzer to identify new biomarkers of biopsy lung cancer samples for subtyping. Front Chem 2022; 10:946157. [PMID: 36105308 PMCID: PMC9466282 DOI: 10.3389/fchem.2022.946157] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2022] [Accepted: 07/15/2022] [Indexed: 11/13/2022] Open
Abstract
Identifying new biomarkers is necessary and important to diagnose and treat malignant lung cancer. However, existing protein marker detection methods usually require complex operation steps, leading to a lag time for diagnosis. Herein, we developed a rapid, minimally invasive, and convenient nucleic acid biomarker recognition method, which enabled the combined specific detection of 11 lung cancer typing markers in a microliter reaction system after only one sampling. The primers for the combined specific detection of 11 lung cancer typing markers were designed and screened, and the microfluidic chip for parallel detection of the multiple markers was designed and developed. Furthermore, a miniaturized microfluidic-based analyzer was also constructed. By developing a microfluidic chip and a miniaturized nucleic acid analyzer, we enabled the detection of the mRNA expression levels of multiple biomarkers in rice-sized tissue samples. The miniaturized nucleic acid analyzer could detect ≥10 copies of nucleic acids. The cell volume of the typing reaction on the microfluidic chip was only 0.94 μL, less than 1/25 of that of the conventional 25-μL Eppendorf tube PCR method, which significantly reduced the testing cost and significantly simplified the analysis of multiple biomarkers in parallel. With a simple injection operation and reverse transcription loop-mediated isothermal amplification (RT-LAMP), real-time detection of 11 lung cancer nucleic acid biomarkers was performed within 45 min. Given these compelling features, 86 clinical samples were tested using the miniaturized nucleic acid analyzer and classified according to the cutoff values of the 11 biomarkers. Furthermore, multi-biomarker analysis was conducted by a machine learning model to classify different subtypes of lung cancer, with an average area under the curve (AUC) of 0.934. This method shows great potential for the identification of new nucleic acid biomarkers and the accurate diagnosis of lung cancer.
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Affiliation(s)
- Xue Lin
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Zi-Hao Bo
- BNRist and School of Software, Tsinghua University, Beijing, China
| | - Wenqi Lv
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Zhanping Zhou
- BNRist and School of Software, Tsinghua University, Beijing, China
| | - Qin Huang
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Wenli Du
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Xiaohui Shan
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Rongxin Fu
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Xiangyu Jin
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Han Yang
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Ya Su
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Kai Jiang
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Yuchen Guo
- Beijing National Research Center for Information Science and Technology, Tsinghua University, Beijing, China
| | - Hongwu Wang
- Dongzhimen Hospital, Beijing University of Chinese Medicine, Beijing, China
- Emergency General Hospital, Beijing, China
- *Correspondence: Hongwu Wang, ; Feng Xu, ; Guoliang Huang,
| | - Feng Xu
- BNRist and School of Software, Tsinghua University, Beijing, China
- *Correspondence: Hongwu Wang, ; Feng Xu, ; Guoliang Huang,
| | - Guoliang Huang
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
- National Engineering Research Center for Beijing Biochip Technology, Beijing, China
- *Correspondence: Hongwu Wang, ; Feng Xu, ; Guoliang Huang,
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Xue Y, Dong H, Huang H, Li S, Shan X, Li H, Liu H, Xia D, Su S, Yuan Y. Mutation in Mg-Protoporphyrin IX Monomethyl Ester (Oxidative) Cyclase Gene ZmCRD1 Causes Chlorophyll-Deficiency in Maize. Front Plant Sci 2022; 13:912215. [PMID: 35873969 PMCID: PMC9301084 DOI: 10.3389/fpls.2022.912215] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2022] [Accepted: 05/23/2022] [Indexed: 06/01/2023]
Abstract
Chlorophyll molecules are non-covalently associated with chlorophyll-binding proteins to harvest light and perform charge separation vital for energy conservation during photosynthetic electron transfer in photosynthesis for photosynthetic organisms. The present study characterized a pale-green leaf (pgl) maize mutant controlled by a single recessive gene causing chlorophyll reduction throughout the whole life cycle. Through positional mapping and complementation allelic test, Zm00001d008230 (ZmCRD1) with two missense mutations (p.A44T and p.T326M) was identified as the causal gene encoding magnesium-protoporphyrin IX monomethyl ester cyclase (MgPEC). Phylogenetic analysis of ZmCRD1 within and among species revealed that the p.T326M mutation was more likely to be causal. Subcellular localization showed that ZmCRD1 was targeted to chloroplasts. The pgl mutant showed a malformed chloroplast morphology and reduced number of starch grains in bundle sheath cells. The ZmCRD1 gene was mainly expressed in WT and mutant leaves, but the expression was reduced in the mutant. Most of the genes involved in chlorophyll biosynthesis, chlorophyll degradation, chloroplast development and photosynthesis were down-regulated in pgl. The photosynthetic capacity was limited along with developmental retardation and production reduction in pgl. These results confirmed the crucial role of ZmCRD1 in chlorophyll biosynthesis, chloroplast development and photosynthesis in maize.
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Jin X, Fu R, Du W, Shan X, Mao Z, Deng A, Lin X, Su Y, Yang H, Lv W, Zhong H, Huang G. Rapid, Highly Sensitive, and Label-Free Pathogen Assay System Using a Solid-Phase Self-Interference Recombinase Polymerase Amplification Chip and Hyperspectral Interferometry. Anal Chem 2022; 94:2926-2933. [PMID: 35107980 DOI: 10.1021/acs.analchem.1c04858] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Recombinase polymerase amplification (RPA) is a useful pathogen identification method. Several label-free detection methods for RPA amplicons have been developed in recent years. However, these methods still lack sensitivity, specificity, efficiency, or simplicity. In this study, we propose a rapid, highly sensitive, and label-free pathogen assay system based on a solid-phase self-interference RPA chip (SiSA-chip) and hyperspectral interferometry. The SiSA-chips amplify and capture RPA amplicons on the chips, rather than irrelevant amplicons such as primer dimers, and the SiSA-chips are then analysed by hyperspectral interferometry. Optical length increases of SiSA-chips are used to demonstrate RPA detection results, with a limit of detection of 1.90 nm. This assay system can detect as few as six copies of the target 18S rRNA gene of Plasmodium falciparum within 20 min, with a good linear relationship between the detection results and the concentration of target genes (R2 = 0.9903). Single nucleotide polymorphism (SNP) genotyping of the dhfr gene of Plasmodium falciparum is also possible using the SiSA-chip, with as little as 1% of mutant gene distinguished from wild-type loci (m/wt). This system offers a high-efficiency (20 min), high-sensitivity (6 copies/reaction), high-specificity (1% m/wt), and low-cost (∼1/50 of fluorescence assays for RPA) diagnosis method for pathogen DNA identification. Therefore, this system is promising for fast identification of pathogens to help diagnose infectious diseases, including SNP genotyping.
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Affiliation(s)
- Xiangyu Jin
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Rongxin Fu
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Wenli Du
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Xiaohui Shan
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Zeyin Mao
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Anni Deng
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Xue Lin
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Ya Su
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Han Yang
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Wenqi Lv
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Hao Zhong
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Guoliang Huang
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China.,National Engineering Research Center for Beijing Biochip Technology, Beijing 102206, China
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Yang H, Fu R, Shan X, Lin X, Su Y, Jin X, Du W, Lv W, Huang G. A nature-inspired hierarchical branching structure pressure sensor with high sensitivity and wide dynamic range for versatile medical wearables. Biosens Bioelectron 2022; 203:114028. [PMID: 35114465 DOI: 10.1016/j.bios.2022.114028] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2021] [Revised: 01/17/2022] [Accepted: 01/19/2022] [Indexed: 11/02/2022]
Abstract
Pressure-sensing capability is essential for flexible electronic devices, which require high sensitivity and a wide detection range to simplify the system. However, the template-based pressure sensor is powerless to detect high pressure due to the rapid deformation saturation of microstructures. Herein, we demonstrated that a nature-inspired hierarchical branching (HB) structure can effectively address this problem. Finite element analysis demonstrates that the HB structure permits a step-by-step mobilization of microstructure deformation, resulting in a dramatically improved sensitivity (up to 2 orders of magnitude) when compared with the traditional monolayer structure. Experiments show that the HB structure enables pressure sensors to have a lower elastic modulus (1/3 of that of monolayer sensors), a high sensitivity of 13.1 kPa-1 (almost 14 times higher than the monolayer sensor), and a wide dynamic range (0-800 kPa, the minimum detection pressure is 1.6 Pa). The maximum frequency that the sensor can detect is 250 Hz. The response/recovery time is 0.675/0.55 ms respectively. Given this performance, the HB sensor enables high-resolution detection of the weak radial artery pulse wave characteristics in different states, indicating its potential to noninvasively reveal cardiovascular status and the effectiveness of related interventions, such as exercise and drug intervention. As a proof of concept, we also verified that the HB sensor can serve as a versatile platform to support diverse applications from low to high pressure.
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Affiliation(s)
- Han Yang
- Department of Biomedical Engineering, Tsinghua University, Beijing, 100084, China
| | - Rongxin Fu
- Department of Biomedical Engineering, Tsinghua University, Beijing, 100084, China
| | - Xiaohui Shan
- Department of Biomedical Engineering, Tsinghua University, Beijing, 100084, China
| | - Xue Lin
- Department of Biomedical Engineering, Tsinghua University, Beijing, 100084, China
| | - Ya Su
- Department of Biomedical Engineering, Tsinghua University, Beijing, 100084, China
| | - Xiangyu Jin
- Department of Biomedical Engineering, Tsinghua University, Beijing, 100084, China
| | - Wenli Du
- Department of Biomedical Engineering, Tsinghua University, Beijing, 100084, China
| | - Wenqi Lv
- Department of Biomedical Engineering, Tsinghua University, Beijing, 100084, China
| | - Guoliang Huang
- Department of Biomedical Engineering, Tsinghua University, Beijing, 100084, China.
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11
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Huang Q, Shan X, Cao R, Jin X, Lin X, He Q, Zhu Y, Fu R, Du W, Lv W, Xia Y, Huang G. Microfluidic Chip with Two-Stage Isothermal Amplification Method for Highly Sensitive Parallel Detection of SARS-CoV-2 and Measles Virus. Micromachines (Basel) 2021; 12:mi12121582. [PMID: 34945432 PMCID: PMC8705924 DOI: 10.3390/mi12121582] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/19/2021] [Revised: 12/11/2021] [Accepted: 12/16/2021] [Indexed: 02/03/2023]
Abstract
A two-stage isothermal amplification method, which consists of a first-stage basic recombinase polymerase amplification (RPA) and a second-stage fluorescence loop-mediated isothermal amplification (LAMP), as well as a microfluidic-chip-based portable system, were developed in this study; these enabled parallel detection of multiplex targets in real time in around one hour, with high sensitivity and specificity, without cross-contamination. The consumption of the sample and the reagent was 2.1 μL and 10.6 μL per reaction for RPA and LAMP, respectively. The lowest detection limit (LOD) was about 10 copies. The clinical amplification of about 40 nasopharyngeal swab samples, containing 17 SARS-CoV-2 (severe acute respiratory syndrome coronavirus) and 23 measles viruses (MV), were parallel tested by using the microfluidic chip. Both clinical specificity and sensitivity were 100% for MV, and the clinical specificity and sensitivity were 94.12% and 95.83% for SARS-CoV-2, respectively. This two-stage isothermal amplification method based on the microfluidic chip format offers a convenient, clinically parallel molecular diagnostic method, which can identify different nucleic acid samples simultaneously and in a timely manner, and with a low cost of the reaction reagent. It is especially suitable for resource-limited areas and point-of-care testing (POCT).
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Affiliation(s)
- Qin Huang
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China; (Q.H.); (X.S.); (X.J.); (X.L.); (R.F.); (W.D.); (W.L.)
| | - Xiaohui Shan
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China; (Q.H.); (X.S.); (X.J.); (X.L.); (R.F.); (W.D.); (W.L.)
| | - Ranran Cao
- Sichuan Center for Disease Control and Prevention, Chengdu 610041, China;
| | - Xiangyu Jin
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China; (Q.H.); (X.S.); (X.J.); (X.L.); (R.F.); (W.D.); (W.L.)
| | - Xue Lin
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China; (Q.H.); (X.S.); (X.J.); (X.L.); (R.F.); (W.D.); (W.L.)
| | - Qiurong He
- West China School of Public Health and West China Fourth Hospital, Sichuan University, Chengdu 610041, China; (Q.H.); (Y.Z.)
| | - Yulei Zhu
- West China School of Public Health and West China Fourth Hospital, Sichuan University, Chengdu 610041, China; (Q.H.); (Y.Z.)
| | - Rongxin Fu
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China; (Q.H.); (X.S.); (X.J.); (X.L.); (R.F.); (W.D.); (W.L.)
| | - Wenli Du
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China; (Q.H.); (X.S.); (X.J.); (X.L.); (R.F.); (W.D.); (W.L.)
| | - Wenqi Lv
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China; (Q.H.); (X.S.); (X.J.); (X.L.); (R.F.); (W.D.); (W.L.)
| | - Ying Xia
- West China School of Public Health and West China Fourth Hospital, Sichuan University, Chengdu 610041, China; (Q.H.); (Y.Z.)
- Correspondence: (Y.X.); (G.H.); Tel.: +86-(010)-62797213 (G.H.)
| | - Guoliang Huang
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China; (Q.H.); (X.S.); (X.J.); (X.L.); (R.F.); (W.D.); (W.L.)
- Correspondence: (Y.X.); (G.H.); Tel.: +86-(010)-62797213 (G.H.)
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12
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Shan X, Han D, Ge Y, Zhang H, Lu R. Clinical outcomes of keratinized mucosa augmentation in jaws reconstructed with fibula or iliac bone flaps. Int J Oral Maxillofac Surg 2021; 51:949-956. [PMID: 34924272 DOI: 10.1016/j.ijom.2021.11.013] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2021] [Revised: 08/25/2021] [Accepted: 11/23/2021] [Indexed: 10/19/2022]
Abstract
This prospective study was undertaken to evaluate the treatment outcomes of keratinized mucosa augmentation (KMA) on the buccal and palatal/lingual sides of implants in jaws reconstructed after oncological surgery. Forty-two implants in 12 patients whose jaws had been reconstructed with a fibula or iliac bone flap were included. KMA was performed at 3 months after implant placement; this included an apically displaced partial-thickness flap and a free gingival graft (FGG) around the implants to increase the keratinized mucosa width (KMW). Patients were followed up for at least 6 months post-surgery. KMW, shrinkage, and patient pain and discomfort measured on a visual analogue scale were analysed. A histological analysis was performed of tissue epithelium from two patients. The results showed that KMW was >2 mm on both the buccal and palatal/lingual sides during follow-up. Before surgery, histological analysis showed epithelium with no epithelial spikes; normal keratinized epithelial spikes were observed at 8 weeks after KMA. Greater KMW was observed around implants in reconstructed maxillae than around those in reconstructed mandibles (P < 0.001). Patients felt more pain at the donor site than at the recipient site during the first 3 days post-surgery. KMA with FGG was predictable in reconstructed jaws and may help maintain the long-term stability of implants.
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Affiliation(s)
- X Shan
- Department of Oral and Maxillofacial Surgery, Peking University School and Hospital of Stomatology, National Clinical Research Centre for Oral Diseases and National Engineering Laboratory for Digital and Material Technology of Stomatology and Beijing Key Laboratory of Digital Stomatology, Beijing, PR China
| | - D Han
- Department of Prosthodontics, Peking University School and Hospital of Stomatology, Beijing, PR China
| | - Y Ge
- Department of Prosthodontics, Peking University School and Hospital of Stomatology, Beijing, PR China
| | - H Zhang
- Department of Periodontology, Peking University School and Hospital of Stomatology, Beijing, PR China
| | - R Lu
- Department of Periodontology, Peking University School and Hospital of Stomatology, Beijing, PR China.
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13
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Fu R, Du W, Jin X, Wang R, Lin X, Su Y, Yang H, Shan X, Lv W, Zheng Z, Huang G. Microfluidic Biosensor for Rapid Nucleic Acid Quantitation Based on Hyperspectral Interferometric Amplicon-Complex Analysis. ACS Sens 2021; 6:4057-4066. [PMID: 34694791 DOI: 10.1021/acssensors.1c01491] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Nucleic acid detection plays a vital role in both biomedical research and clinical medicine. The temperature circulation changes of the widely used polymerase chain reaction technique are time-consuming and technically challenging for system development. Recombinase polymerase amplification (RPA) is an isothermal method for rapid nucleic acid detection. However, current RPA amplicon detection methods are complicated and expensive and easily generate false positives, restricting the promotion of RPA techniques. In this work, a hyperspectral interferometric amplicon-complex quantitation method is presented, combined with asymmetric dipole complex strategy optical scattering analysis. GelRed dye was utilized to form amplicon-complex particles, and the Fourier domain spectrum computation contributed to complex scattering quantitation. With this method, a supporting microfluidic chip and automatic system were developed to achieve integrated, rapid, quantitative, and miniscule nucleic acid detection. The Plasmodium falciparum dhfr gene was utilized as an example for targeted nucleic acid quantitation and single nucleotide polymorphism detection. The total reaction time was decreased to merely 20 min, and the limit of detection was only 3.17 ng/μL. The minimum measurable concentration of target was 1.68 copies/μL, 31.67 times more sensitive than turbidity detection, and the single reaction chamber was only 9.33 μL. No scattering increase occurred for template-free control, and thus, false positives caused by primer dimers and nonspecific products could be avoided. The experimental results prove that the provided method and system can detect single-base mutations in the dhfr gene and is a reasonable technique for rapid, automatic, and low-cost nucleic acid detection.
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Affiliation(s)
- Rongxin Fu
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Wenli Du
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Xiangyu Jin
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Ruliang Wang
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Xue Lin
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Ya Su
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Han Yang
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Xiaohui Shan
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Wenqi Lv
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Zhi Zheng
- Department of Biochemistry and Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences and School of Basic Medicine, Peking Union Medical College, Beijing 100730, China
| | - Guoliang Huang
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
- National Engineering Research Center for Beijing Biochip Technology, Beijing 102206, China
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14
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Liu J, Wang A, Trapani D, Sun X, Shan X, Al-Madani H, Safi M. 14P Identification of age-associated genes as prognostic factors in non-small cell lung cancer. Ann Oncol 2021. [DOI: 10.1016/j.annonc.2021.08.2010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022] Open
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15
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Li Y, Shan X, Jiang Z, Zhao L, Jin F. Genome-wide identification and expression analysis of the GA2ox gene family in maize (Zea mays L.) under various abiotic stress conditions. Plant Physiol Biochem 2021; 166:621-633. [PMID: 34192648 DOI: 10.1016/j.plaphy.2021.06.043] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2021] [Revised: 06/20/2021] [Accepted: 06/22/2021] [Indexed: 06/13/2023]
Abstract
GA 2-oxidases (GA2oxs) are a class of enzymes that inhibit the biosynthesis of bioactive GAs in plants. Although GA2oxs have clear roles in the development and defence responses in Arabidopsis, rice, and wheat, their potential effects on maize remain unclear. This study identified thirteen ZmGA2ox genes in maize and further characterized them using phylogenetic, gene structure, genomic locus, expression pattern analyses and GA content determination. Phylogenetic relationship analysis clearly divided the ZmGA2ox family into three groups-seven in C19-GA2ox class I, three in C19-GA2ox class II, and three in C20-GA2ox class. Evolutionary analysis suggested that ZmGA2ox1;1 and ZmGA2ox1;2, ZmGA2ox3;1 and ZmGA2ox3;2, and ZmGA2ox7;1 and ZmGA2ox7;2 are three pairs of segmental duplicated genes. Prediction of cis-regulatory elements in promoters suggested that ZmGA2ox genes were mainly associated with growth, development, hormones, and biotic/abiotic stress. Therefore, their spatial and temporal expression patterns and responses to various stress treatments were analysed on the basis of published RNA-seq data. Moreover, the changes of ZmGA2ox expression in leaves and roots of maize seedlings was detected under salt, alkali, dehydration, and cold stresses by qRT-PCR. The ZmGA2oxs exhibited obvious expression tendencies or characteristics in various organs under different abiotic stresses. The variations in the expression of three ZmGA2ox genes in the C20-GA2ox class in maize seedling roots showed significant regularity and a clear negative correlation with bioactive GA contents under cold and drought conditions, indicating that these three genes might exert key effects on the regulation of GA synthesis and the response to drought and cold stress. Taken together, this study is useful for further dissection of the effect of ZmGA2oxs on abiotic stress responses and might provide potential targets for the genetic improvement of maize.
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Affiliation(s)
- Yidan Li
- Agro-Biotechnology Research Institute, Jilin Academy of Agricultural Sciences, Changchun, 130033, China.
| | - Xiaohui Shan
- College of Plant Science, Jilin University, Changchun, 130062, China
| | - Zhilei Jiang
- Agro-Biotechnology Research Institute, Jilin Academy of Agricultural Sciences, Changchun, 130033, China
| | - Lei Zhao
- College of Plant Science, Jilin University, Changchun, 130062, China
| | - Fengxue Jin
- Agro-Biotechnology Research Institute, Jilin Academy of Agricultural Sciences, Changchun, 130033, China
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16
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Safi M, Al-Azab M, Shan X, Wang A, Jin C, Henan Q, Liu J. 1737P Prognosis of metastatic sites in heart-specific death of cancer patients. Ann Oncol 2021. [DOI: 10.1016/j.annonc.2021.08.1981] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022] Open
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17
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Lin X, Jin X, Du W, Shan X, Huang Q, Fu R, Lv W, Yang H, Su Y, Huang G. Quantitative and specific detection of viable pathogens on a portable microfluidic chip system by combining improved propidium monoazide (PMAxx) and loop-mediated isothermal amplification (LAMP). Anal Methods 2021; 13:3569-3576. [PMID: 34286728 DOI: 10.1039/d1ay00953b] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
An accurate and specific detection of viable Candida albicans (C. albicans) in vaginal discharge is crucial for the diagnosis of vulvovaginal candidiasis (VVC) and assessment of antifungal effects. In this study, improved propidium monoazide (PMAxx) and loop-mediated isothermal amplification (LAMP) were used for the first time to distinguish between viable and dead C. albicans. A portable microfluidic chip system was developed to detect multiple viable pathogens in parallel. The consumption of samples and reagents in per reaction cell were only 0.94 μL, less than 1/25 of the conventional 25 μL Eppendorf tubular test method, both significantly reducing testing cost and greatly simplifying the detection of multiple viable pathogens. The concentration of PMAxx was optimized against C. albicans at 4.0 log CFU mL-1 to 5.0 log CFU mL-1, and 1 μM PMAxx was proven to be suitable for the detection of C. albicans in clinical samples. When testing mixtures containing different ratios of viable to dead C. albicans, PMAxx-LAMP could circumvent the signal arising from dead cells and, therefore, reflected the abundance of viable cells precisely. Furthermore, the suitability of this technique to evaluate the effects of antifungal agents, including clotrimazole, miconazole, and tioconazole, was assessed. Finally, the viability of Escherichia coli (E. coli) and C. albicans were detected on the portable microfluidic chip system. PMAxx-LAMP based portable microfluidic chip system was determined to be a feasible technique for assessing the viability of multiple pathogens in gynecology and might provide insights into new VVC treatment strategies.
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Affiliation(s)
- Xue Lin
- Department of Biomedical Engineering, The School of Medicine, Tsinghua University, Beijing 100084, P. R. China.
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18
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Li X, Hou J, Shan X, Tian E, Wang Y, Xu W. P–257 An unknown cause lead to polyspermy in IVF cycles and 0PN zygotes in ICSI cycles in male patient. Hum Reprod 2021. [DOI: 10.1093/humrep/deab130.256] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
Study question
The patient sperm has normal morphology and motility, which paternal factors cause the abnormal fertilization in IVF/ICSI and what is the underlying mechanism?
Summary answer
A genetic mutation of BEX1 and decreased PLC-zeta has been found in patient, which may provide novel insights of polyspermy and pronucleus formation during fertilization.
What is known already
In mammals, pronucleus formation, a landmark event for fertilization, is critical for embryonic development. Abnormal fertilization refers to the abnormal number of pronucleus and polar bodies in zygotes during in vitro fertilization, with an incidence of 5–15%, among which the incidence of polyspermy and 0PN is about 2–10% and 30%. However, the mechanisms underlying pronucleus formation still unclear. More research has focused on oocyte activation, while paternal relevant abnormal fertilizations have been rarely established. The mechanism of how sperm and/or substances carried by sperm influence the physiological process of fertilization is also unclear.
Study design, size, duration
In our study, we first work on the preliminary observation and analysis of sperm morphology, structure and sperm chromosome number, and then made further analysis at the genetic level to find out the cause of this particular phenotype in this patient. We use of zone-free golden hamster ova test the fertilizing capacity and rescue the pronucleus formation with SrCl2.
Participants/materials, setting, methods
The patient, golden hamster, Papanicolaou stain, scanning electron microscope (SEM), Transmission Electron Microscope (TEM), Fluorescence in situ hybridization (FISH), Whole Exome Sequencing (WES), IVF, ICSI, Assisted Oocyte Activation (AOA).
Main results and the role of chance
During 2016–2018, they did 4 cycle assistant reproduction technology. Cycle1, conventional IVF(C-IVF), 9 MII oocytes, 9 3PN zygotes; Cycle2, ICSI, 10 MII oocytes, 10 0PN zygotes; Cycle3, donor-oocytes C-IVF, 6 MII oocytes, 6 3PN zygotes, and the donor did C-IVF get normal zygotes and embryos; Cycle4, donor-sperm C-IVF, 7 MII oocytes, 4 2PN zygotes, 3 useable embryos. Remarkably, clinical examination about male shows normal sperm semen parameters. Papanicolaou stain and SEM shows that the sperm of the patient has normal morphology. The TEM data shows that the spermatozoa with normal head morphology and intact 9 + 2 sperm flagella structure. In the sperm FISH analysis, Chromosome ploidy is haploid. We performed WES on the male, after exclusion of frequent variants and application of technical and biological filters, two homozygous missense mutations were identified in BEX1 (c.191G>A [p. W64X]), which has been few reports of male infertility. The western blot result show that the PLC-zeta was decreased in patient. After 10mM SrCl2 assisted oocyte activation, the zygote has the pronucleus formation in ICSI.
Limitations, reasons for caution
At present, we only observe sperm related factors (morphology, structure, chromosome number, genetic mutation). Next step is to detect the substances sperm carried (e.g. RNA-seq, proteomics). In this case, what is of great concern to us is the inconsistencies of the abnormal fertilization during the conventional IVF and ICSI cycles.
Wider implications of the findings: Many studies of fertilization mechanism, the main focus is on the maternal cytoplasmic factors, such as the Ca 2+ release initiate the fast block of oocytes. There are few reports about abnormal fertilization due to sperm factors. Our case may offer new insights for the study of fertilization.
Trial registration number
Not applicable
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Affiliation(s)
- X Li
- Sichuan university, Joint Laboratory of Reproductive Medicine- SCU-CUHK- Key Laboratory of Obstetric- Gynaecologic and Paediatric Diseases and Birth Defects of Ministry of Education- West China Second University Hospital-, chengdu, China
| | - J Hou
- Sichuan university, Joint Laboratory of Reproductive Medicine- SCU-CUHK- Key Laboratory of Obstetric- Gynaecologic and Paediatric Diseases and Birth Defects of Ministry of Education- West China Second University Hospital-, chengdu, China
| | - X Shan
- Chengdu University of Traditional Chinese Medicine, School of Medical and Life Sciences, Chengdu, China
| | - E Tian
- Maternity and Child Health Hospital of Jinjiang District, the Center of Reproductive Medicine, Chengdu, China
| | - Y Wang
- Sichuan university, Reproduction Medical Center of West China Second University Hospital- Key Laboratory of Obstetric- Gynecologic and Pediatric Diseases and Birth Defects of Ministry of Education, chengdu, China
| | - W Xu
- Sichuan university, Joint Laboratory of Reproductive Medicine- SCU-CUHK- Key Laboratory of Obstetric- Gynaecologic and Paediatric Diseases and Birth Defects of Ministry of Education- West China Second University Hospital-, chengdu, China
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19
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Xue C, Jiang Y, Wang Z, Shan X, Yuan Y, Hua J. Tissue-level transcriptomic responses to local and distal chilling reveal potential chilling survival mechanisms in maize. J Exp Bot 2021; 72:erab323. [PMID: 34240135 DOI: 10.1093/jxb/erab323] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2021] [Indexed: 06/13/2023]
Abstract
Chilling is a major stress to plants of subtropical and tropical origins including maize (Zea mays L.). To reveal molecular mechanisms underlying chilling tolerance and survival, we investigated transcriptomic responses to chilling stress in differentiated leaves and roots as well as in crowns with meristem activity in maize. Chilling stress on shoots and roots is found to each contributes to seedling lethality in maize. Comparison of maize lines with different chilling tolerance capacities reveals that chilling survival is highly associated with upregulation of abscisic acid biosynthesis and response as well as transcriptional regulators in leaves and crowns. It is also associated with the downregulation of translation in leaves and heat response in crowns. Chilling treatment on whole or part of the plants reveals that response to distal-chilling is very distinct from, and sometimes opposite to, response to local- or whole-plant chilling in both leaves and roots, suggesting a communication between shoots and roots in environmental response. This study thus provides transcriptomic responses in leaves, roots and crowns under differential chilling stresses in maize and reveals potential chilling tolerance and survival mechanisms which lays ground for improving chilling tolerance in crop plants.
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Affiliation(s)
- Chunmei Xue
- College of Plant Science, Jilin University, Changchun 130062, P.R. China
- Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA
| | - Yuan Jiang
- College of Plant Science, Jilin University, Changchun 130062, P.R. China
- Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA
| | - Zhixue Wang
- Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA
| | - Xiaohui Shan
- College of Plant Science, Jilin University, Changchun 130062, P.R. China
| | - Yaping Yuan
- College of Plant Science, Jilin University, Changchun 130062, P.R. China
| | - Jian Hua
- Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA
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20
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Su Y, Fu R, Du W, Yang H, Ma L, Luo X, Wang R, Lin X, Jin X, Shan X, Lv W, Huang G. Label-Free and Quantitative Dry Mass Monitoring for Single Cells during In Situ Culture. Cells 2021; 10:cells10071635. [PMID: 34209893 PMCID: PMC8303735 DOI: 10.3390/cells10071635] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Revised: 06/19/2021] [Accepted: 06/25/2021] [Indexed: 11/16/2022] Open
Abstract
Quantitative measurement of single cells can provide in-depth information about cell morphology and metabolism. However, current live-cell imaging techniques have a lack of quantitative detection ability. Herein, we proposed a label-free and quantitative multichannel wide-field interferometric imaging (MWII) technique with femtogram dry mass sensitivity to monitor single-cell metabolism long-term in situ culture. We demonstrated that MWII could reveal the intrinsic status of cells despite fluctuating culture conditions with 3.48 nm optical path difference sensitivity, 0.97 fg dry mass sensitivity and 2.4% average maximum relative change (maximum change/average) in dry mass. Utilizing the MWII system, different intrinsic cell growth characteristics of dry mass between HeLa cells and Human Cervical Epithelial Cells (HCerEpiC) were studied. The dry mass of HeLa cells consistently increased before the M phase, whereas that of HCerEpiC increased and then decreased. The maximum growth rate of HeLa cells was 11.7% higher than that of HCerEpiC. Furthermore, HeLa cells were treated with Gemcitabine to reveal the relationship between single-cell heterogeneity and chemotherapeutic efficacy. The results show that cells with higher nuclear dry mass and nuclear density standard deviations were more likely to survive the chemotherapy. In conclusion, MWII was presented as a technique for single-cell dry mass quantitative measurement, which had significant potential applications for cell growth dynamics research, cell subtype analysis, cell health characterization, medication guidance and adjuvant drug development.
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21
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Dong H, Li H, Xue Y, Su S, Li S, Shan X, Liu H, Jiang N, Wu X, Zhang Z, Yuan Y. E183K Mutation in Chalcone Synthase C2 Causes Protein Aggregation and Maize Colorless. Front Plant Sci 2021; 12:679654. [PMID: 34249050 PMCID: PMC8261305 DOI: 10.3389/fpls.2021.679654] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/12/2021] [Accepted: 05/12/2021] [Indexed: 06/13/2023]
Abstract
Flavonoids give plants their rich colors and play roles in a number of physiological processes. In this study, we identified a novel colorless maize mutant showing reduced pigmentation throughout the whole life cycle by EMS mutagenesis. E183K mutation in maize chalcone synthase C2 (ZmC2) was mapped using MutMap strategy as the causal for colorless, which was further validated by transformation in Arabidopsis. We evaluated transcriptomic and metabolic changes in maize first sheaths caused by the mutation. The downstream biosynthesis was blocked while very few genes changed their expression pattern. ZmC2-E183 site is highly conserved in chalcone synthase among Plantae kingdom and within species' different varieties. Through prokaryotic expression, transient expression in maize leaf protoplasts and stable expression in Arabidopsis, we observed that E183K and other mutations on E183 could cause almost complete protein aggregation of chalcone synthase. Our findings will benefit the characterization of flavonoid biosynthesis and contribute to the body of knowledge on protein aggregation in plants.
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Affiliation(s)
- Haixiao Dong
- College of Plant Science, Jilin University, Changchun, China
| | - He Li
- College of Plant Science, Jilin University, Changchun, China
| | - Yingjie Xue
- College of Plant Science, Jilin University, Changchun, China
| | - Shengzhong Su
- College of Plant Science, Jilin University, Changchun, China
| | - Shipeng Li
- College of Plant Science, Jilin University, Changchun, China
| | - Xiaohui Shan
- College of Plant Science, Jilin University, Changchun, China
| | - Hongkui Liu
- College of Plant Science, Jilin University, Changchun, China
| | - Nan Jiang
- College of Plant Science, Jilin University, Changchun, China
| | - Xuyang Wu
- College of Plant Science, Jilin University, Changchun, China
| | - Zhiwu Zhang
- Department of Crop and Soil Sciences, Washington State University, Pullman, WA, United States
| | - Yaping Yuan
- College of Plant Science, Jilin University, Changchun, China
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Safi M, Trapani D, Alradhi M, Al-Danakh A, Shan X, Ping F, Al-Masni A, Jamalat Y, Al-Sabai N, Al-Dhaibani A, Al-Samawi A, Al-Sameai M, Al-Sharabi A, Liu J. 170P Pattern and prognosis of fatal cardiac events in locoregional and distant stages in female breast cancer patients: SEER- based analysis. Ann Oncol 2021. [DOI: 10.1016/j.annonc.2021.03.184] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
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23
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Safi M, Al-Radhi M, Kanesvaran R, Trapani D, Mazher S, Alnusaif M, Aldanakh A, Baldi S, Moeed Y, Al-Dubai H, Sun X, Shan X, Ameen M, Liu J. 195P Brain and heart in cancer patients: A population-based study. J Thorac Oncol 2021. [DOI: 10.1016/s1556-0864(21)02037-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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24
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Fu R, Su Y, Wang R, Lin X, Jin X, Yang H, Du W, Shan X, Lv W, Huang G. Single cell capture, isolation, and long-term in-situ imaging using quantitative self-interference spectroscopy. Cytometry A 2021; 99:601-609. [PMID: 33704903 DOI: 10.1002/cyto.a.24333] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Revised: 03/04/2021] [Accepted: 03/05/2021] [Indexed: 11/09/2022]
Abstract
Single cell research with microfluidic chip is of vital importance in biomedical studies and clinical medicine. Simultaneous microfluidic cell manipulations and long-term cell monitoring needs further investigations due to the lack of label-free quantitative imaging techniques and systems. In this work, single cell capture, isolation and long-term in-situ monitoring was realized with a microfluidic cell chip, compact cell incubator and quantitative self-interference spectroscopy. The proposed imaging method could obtain quantitative and dynamic refractive index distribution in living cells. And the designed microfluidic chip could capture and isolate single cells. The customized incubator could support cell growth conditions when single cell was captured in microfluidic chip. According to the results, single cells could be trapped, transferred and pushed into the culture chamber with the microfluidic chip. The incubator could culture single cells in the chip for 120 h. The refractive index sensitivity of the proposed quantitative imaging method was 0.0282 and the relative error was merely 0.04%.
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Affiliation(s)
- Rongxin Fu
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Ya Su
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Ruliang Wang
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Xue Lin
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Xiangyu Jin
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Han Yang
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Wenli Du
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Xiaohui Shan
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Wenqi Lv
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Guoliang Huang
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China.,National Engineering Research Center for Beijing Biochip Technology, Beijing, China
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25
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Zhao Y, Gao J, Su S, Shan X, Li S, Liu H, Yuan Y, Li H. Regulation of the activity of maize glutamate dehydrogenase by ammonium and potassium. Biosci Biotechnol Biochem 2021; 85:262-271. [PMID: 33604622 DOI: 10.1093/bbb/zbaa020] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Accepted: 08/18/2020] [Indexed: 11/14/2022]
Abstract
Glutamate dehydrogenase (GDH) is an important enzyme in ammonium metabolism, the activity of which is regulated by multiple factors. In this study, we investigate the effects of ammonium and potassium on the activity of maize GDH. Our results show that both ammonium and potassium play multiple roles in regulating the activity of maize GDH, with the specific roles depending on the concentration of potassium. Together with the structural information of GDH, we propose models for the substrate inhibition of ammonium, and the elimination of substrate inhibition by potassium. These models are supported by the analysis of statistic thermodynamics. We also analyze the binding sites of ammonium and potassium on maize GDH, and the conformational changes of maize GDH. The findings provide insight into the regulation of maize GDH activity by ammonium and potassium and reveal the importance of the dose and ratio of nitrogen and potassium in crop cultivation.
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Affiliation(s)
- Yanjie Zhao
- College of Plant Science, Jilin University, Changchun, China
| | - Jie Gao
- College of Plant Science, Jilin University, Changchun, China
| | - Shengzhong Su
- College of Plant Science, Jilin University, Changchun, China
| | - Xiaohui Shan
- College of Plant Science, Jilin University, Changchun, China
| | - Shipeng Li
- College of Plant Science, Jilin University, Changchun, China
| | - Hongkui Liu
- College of Plant Science, Jilin University, Changchun, China
| | - Yaping Yuan
- College of Plant Science, Jilin University, Changchun, China
| | - He Li
- College of Plant Science, Jilin University, Changchun, China
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26
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Lv W, Song Y, Fu R, Lin X, Su Y, Jin X, Yang H, Shan X, Du W, Huang Q, Zhong H, Jiang K, Zhang Z, Wang L, Huang G. Deep Learning Algorithm for Automated Detection of Polycystic Ovary Syndrome Using Scleral Images. Front Endocrinol (Lausanne) 2021; 12:789878. [PMID: 35154003 PMCID: PMC8828568 DOI: 10.3389/fendo.2021.789878] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/05/2021] [Accepted: 12/15/2021] [Indexed: 11/15/2022] Open
Abstract
The high prevalence of polycystic ovary syndrome (PCOS) among reproductive-aged women has attracted more and more attention. As a common disorder that is likely to threaten women's health physically and mentally, the detection of PCOS is a growing public health concern worldwide. In this paper, we proposed an automated deep learning algorithm for the auxiliary detection of PCOS, which explores the potential of scleral changes in PCOS detection. The algorithm was applied to the dataset that contains the full-eye images of 721 Chinese women, among which 388 are PCOS patients. Inputs of the proposed algorithm are scleral images segmented from full-eye images using an improved U-Net, and then a Resnet model was applied to extract deep features from scleral images. Finally, a multi-instance model was developed to achieve classification. Various performance indices such as AUC, classification accuracy, precision, recall, precision, and F1-score were adopted to assess the performance of our algorithm. Results show that our method achieves an average AUC of 0.979 and a classification accuracy of 0.929, which indicates the great potential of deep learning in the detection of PCOS.
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Affiliation(s)
- Wenqi Lv
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Ying Song
- Reproductive Medicine Centre, Peking University Third Hospital, Beijing, China
| | - Rongxin Fu
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Xue Lin
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Ya Su
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Xiangyu Jin
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Han Yang
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Xiaohui Shan
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Wenli Du
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Qin Huang
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Hao Zhong
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Kai Jiang
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
| | - Zhi Zhang
- National Engineering Research Center for Beijing Biochip Technology, Beijing, China
- *Correspondence: Zhi Zhang, ; Lina Wang, ; Guoliang Huang,
| | - Lina Wang
- Reproductive Medicine Centre, Peking University Third Hospital, Beijing, China
- *Correspondence: Zhi Zhang, ; Lina Wang, ; Guoliang Huang,
| | - Guoliang Huang
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China
- National Engineering Research Center for Beijing Biochip Technology, Beijing, China
- *Correspondence: Zhi Zhang, ; Lina Wang, ; Guoliang Huang,
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27
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Ding M, Dong H, Xue Y, Su S, Wu Y, Li S, Liu H, Li H, Han J, Shan X, Yuan Y. Transcriptomic analysis reveals somatic embryogenesis-associated signaling pathways and gene expression regulation in maize (Zea mays L.). Plant Mol Biol 2020; 104:647-663. [PMID: 32910317 DOI: 10.1007/s11103-020-01066-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2019] [Accepted: 08/31/2020] [Indexed: 06/11/2023]
Abstract
Transcriptome analysis of maize embryogenic callus and somatic embryos reveals associated genes reprogramming, hormone signaling pathways and transcriptional regulation involved in somatic embryogenesis in maize. Somatic embryos are widely utilized in propagation and genetic engineering of crop plants. In our laboratory, an elite maize inbred line Y423 that could generate intact somatic embryos was obtained and applied to genetic transformation. To enhance our understanding of regulatory mechanisms during maize somatic embryogenesis, we used RNA-based sequencing (RNA-seq) to characterize the transcriptome of immature embryo (IE), embryogenic callus (EC) and somatic embryo (SE) from maize inbred line Y423. The number of differentially expressed genes (DEGs) in three pairwise comparisons (IE-vs-EC, IE-vs-SE and EC-vs-SE) was 5767, 7084 and 1065, respectively. The expression patterns of DEGs were separated into eight major clusters. Somatic embryogenesis associated genes were mainly grouped into cluster A or B with an expression trend toward up-regulation during dedifferentiation. GO annotation and KEGG pathway analysis revealed that DEGs were implicated in plant hormone signal transduction, stress response and metabolic process. Among the differentially expressed transcription factors, the most frequently represented families were associated with the common stress response or related to cell differentiation, embryogenic patterning and embryonic maturation processes. Genes include hormone response/transduction and stress response, as well as several transcription factors were discussed in this study, which may be potential candidates for further analyses regarding their roles in somatic embryogenesis. Furthermore, the temporal expression patterns of candidate genes were analyzed to reveal their roles in somatic embryogenesis. This transcriptomic data provide insights into future functional studies, which will facilitate further dissections of the molecular mechanisms that control maize somatic embryogenesis.
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Affiliation(s)
- Meiqi Ding
- College of Plant Science, Jilin University, Changchun, 130062, China
| | - Haixiao Dong
- College of Plant Science, Jilin University, Changchun, 130062, China
| | - Yingjie Xue
- College of Plant Science, Jilin University, Changchun, 130062, China
| | - Shengzhong Su
- College of Plant Science, Jilin University, Changchun, 130062, China
| | - Ying Wu
- College of Plant Science, Jilin University, Changchun, 130062, China
| | - Shipeng Li
- College of Plant Science, Jilin University, Changchun, 130062, China
| | - Hongkui Liu
- College of Plant Science, Jilin University, Changchun, 130062, China
| | - He Li
- College of Plant Science, Jilin University, Changchun, 130062, China
| | - Junyou Han
- College of Plant Science, Jilin University, Changchun, 130062, China
| | - Xiaohui Shan
- College of Plant Science, Jilin University, Changchun, 130062, China.
| | - Yaping Yuan
- College of Plant Science, Jilin University, Changchun, 130062, China.
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28
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Song C, Liu J, Wang H, Li X, Liu B, Zhang M, Shan X, Li H, Gao J, Qin J. New Derivatives from Microbial Transformation of ent-Kaur-16-en-19-oic Acid by Cunninghamella echinulata. Chem Biodivers 2020; 17:e2000178. [PMID: 32452652 DOI: 10.1002/cbdv.202000178] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2020] [Accepted: 04/17/2020] [Indexed: 11/09/2022]
Abstract
Biotransformation of ent-kaur-16-en-19-oic acid using fungus Cunninghamella echinulata resulted in two novel hydroxylated metabolites together with five known compounds. Their structures were elucidated by means of extensive NMR and HR-ESI-MS data analysis. The eight compounds were measured for their cytotoxicity against the human breast carcinoma (MCF-7) and human hepatoblastoma (HepG-2) cell lines. Seven compounds showed no cytotoxicity to the two cell lines. One compound displayed moderate cytotoxicity against HepG-2 and MCF-7 with the IC50 values of 12.6 and 27.1 μM, respectively.
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Affiliation(s)
- Chenggang Song
- College of Plant Science, Jilin University, Changchun, 130062, P. R. China
| | - Juan Liu
- College of Plant Science, Jilin University, Changchun, 130062, P. R. China
| | - Haoyu Wang
- College of Plant Science, Jilin University, Changchun, 130062, P. R. China
| | - Xiang Li
- College of Plant Science, Jilin University, Changchun, 130062, P. R. China
| | - Bing Liu
- College of Plant Science, Jilin University, Changchun, 130062, P. R. China
| | - Mingzhe Zhang
- College of Plant Science, Jilin University, Changchun, 130062, P. R. China
| | - Xiaohui Shan
- College of Plant Science, Jilin University, Changchun, 130062, P. R. China
| | - He Li
- College of Plant Science, Jilin University, Changchun, 130062, P. R. China
| | - Jinming Gao
- Shanxi Key Laboratory of Natural Products and Chemical Biology, College of Chemistry and Pharmacy, Northwest A&F University, Yangling, Xianyang, 712100, P. R. China
| | - Jianchun Qin
- College of Plant Science, Jilin University, Changchun, 130062, P. R. China
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29
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Qin N, Shan X, Sun X, Liswaniso S, Chimbaka IM, Xu R. Evaluation and Validation of the Six Housekeeping Genes for Normalizing Mrna Expression in the Ovarian Follicles and Several Tissues in Chicken. Braz J Poult Sci 2020. [DOI: 10.1590/1806-9061-2019-1256] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Affiliation(s)
- N Qin
- Jilin Agricultural University, China; Ministry of Education, P. R. China
| | - X Shan
- Jilin Agricultural University, China
| | - X Sun
- Jilin Agricultural University, China; Ministry of Education, P. R. China
| | - S Liswaniso
- Jilin Agricultural University, China; Ministry of Education, P. R. China
| | - IM Chimbaka
- Jilin Agricultural University, China; Ministry of Education, P. R. China
| | - R Xu
- Jilin Agricultural University, China; Ministry of Education, P. R. China
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Jiang Z, Jin F, Shan X, Li Y. iTRAQ-Based Proteomic Analysis Reveals Several Strategies to Cope with Drought Stress in Maize Seedlings. Int J Mol Sci 2019; 20:ijms20235956. [PMID: 31779286 PMCID: PMC6928945 DOI: 10.3390/ijms20235956] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2019] [Revised: 11/19/2019] [Accepted: 11/25/2019] [Indexed: 12/11/2022] Open
Abstract
Drought stress, especially during the seedling stage, seriously limits the growth of maize and reduces production in the northeast of China. To investigate the molecular mechanisms of drought response in maize seedlings, proteome changes were analyzed. Using an isotopic tagging relative quantitation (iTRAQ) based method, a total of 207 differentially accumulated protein species (DAPS) were identified under drought stress in maize seedlings. The DAPS were classified into ten essential groups and analyzed thoroughly, which involved in signaling, osmotic regulation, protein synthesis and turnover, reactive oxygen species (ROS) scavenging, membrane trafficking, transcription related, cell structure and cell cycle, fatty acid metabolism, carbohydrate and energy metabolism, as well as photosynthesis and photorespiration. The enhancements of ROS scavenging, osmotic regulation, protein turnover, membrane trafficking, and photosynthesis may play important roles in improving drought tolerance of maize seedlings. Besides, the inhibitions of some protein synthesis and slowdown of cell division could reduce the growth rate and avoid excessive water loss, which is possible to be the main reasons for enhancing drought avoidance of maize seedlings. The incongruence between protein and transcript levels was expectedly observed in the process of confirming iTRAQ data by quantitative real-time polymerase chain reaction (qRT-PCR) analysis, which further indicated that the multiplex post-transcriptional regulation and post-translational modification occurred in drought-stressed maize seedlings. Finally, a hypothetical strategy was proposed that maize seedlings coped with drought stress by improving drought tolerance (via. promoting osmotic adjustment and antioxidant capacity) and enhancing drought avoidance (via. reducing water loss). Our study provides valuable insight to mechanisms underlying drought response in maize seedlings.
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Affiliation(s)
- Zhilei Jiang
- Institute of Agricultural Biotechnology, Jilin Academy of Agricultural Sciences/Jilin Provincial Key Laboratory of Agricultural Biotechnology, Changchun 130033, China; (Z.J.); (F.J.)
| | - Fengxue Jin
- Institute of Agricultural Biotechnology, Jilin Academy of Agricultural Sciences/Jilin Provincial Key Laboratory of Agricultural Biotechnology, Changchun 130033, China; (Z.J.); (F.J.)
| | - Xiaohui Shan
- College of Plant Science, Jilin University, Changchun 130062, China
- Correspondence: (X.S.); (Y.L.)
| | - Yidan Li
- Institute of Agricultural Biotechnology, Jilin Academy of Agricultural Sciences/Jilin Provincial Key Laboratory of Agricultural Biotechnology, Changchun 130033, China; (Z.J.); (F.J.)
- Correspondence: (X.S.); (Y.L.)
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31
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Shan X, Yu M, Zhao X. Ectopic origin and communicating branch of left anterior descending artery arising from the conus artery: a rare coronary anomaly. Herz 2019; 45:111-112. [PMID: 31254012 DOI: 10.1007/s00059-019-4830-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2019] [Revised: 04/25/2019] [Accepted: 06/10/2019] [Indexed: 11/28/2022]
Affiliation(s)
- X Shan
- Department of Cardiovasology, Changhai Hospital, Second Military Medical University, 168 Changhai Road, 200433, Shanghai, China
| | - M Yu
- Department of Cardiovasology, Changhai Hospital, Second Military Medical University, 168 Changhai Road, 200433, Shanghai, China
| | - X Zhao
- Department of Cardiovasology, Changhai Hospital, Second Military Medical University, 168 Changhai Road, 200433, Shanghai, China.
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32
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Liu B, Shan X, Wu Y, Su S, Li S, Liu H, Han J, Yuan Y. iTRAQ-Based Quantitative Proteomic Analysis of Embryogenic and Non-embryogenic Calli Derived from a Maize ( Zea mays L.) Inbred Line Y423. Int J Mol Sci 2018; 19:ijms19124004. [PMID: 30545080 PMCID: PMC6321184 DOI: 10.3390/ijms19124004] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2018] [Revised: 12/03/2018] [Accepted: 12/07/2018] [Indexed: 11/16/2022] Open
Abstract
Somatic embryos (SE) have potential to rapidly form a whole plant. Generally, SE is thought to be derived from embryogenic calli (EC). However, in maize, not only embryogenic calli (EC, can generate SE) but also nonembryogenic calli (NEC, can’t generate SE) can be induced from immature embryos. In order to understand the differences between EC and NEC and the mechanism of EC, which can easily form SE in maize, differential abundance protein species (DAPS) of EC and NEC from the maize inbred line Y423 were identified by using the isobaric tags for relative and absolute quantification (iTRAQ) proteomic technology. We identified 632 DAPS in EC compared with NEC. The results of bioinformatics analysis showed that EC development might be related to accumulation of pyruvate caused by the DAPS detected in some pathways, such as starch and sucrose metabolism, glycolysis/gluconeogenesis, tricarboxylic acid (TCA) cycle, fatty acid metabolism and phenylpropanoid biosynthesis. Based on the differentially accumulated proteins in EC and NEC, a series of DAPS related with pyruvate biosynthesis and suppression of acetyl-CoA might be responsible for the differences between EC and NEC cells. Furthermore, we speculate that the decreased abundance of enzymes/proteins involved in phenylpropanoid biosynthesis pathway in the EC cells results in reducing of lignin substances, which might affect the maize callus morphology.
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Affiliation(s)
- Beibei Liu
- College of Plant Science, Jilin University, Changchun 130062, China.
| | - Xiaohui Shan
- College of Plant Science, Jilin University, Changchun 130062, China.
| | - Ying Wu
- College of Plant Science, Jilin University, Changchun 130062, China.
| | - Shengzhong Su
- College of Plant Science, Jilin University, Changchun 130062, China.
| | - Shipeng Li
- College of Plant Science, Jilin University, Changchun 130062, China.
| | - Hongkui Liu
- College of Plant Science, Jilin University, Changchun 130062, China.
| | - Junyou Han
- College of Plant Science, Jilin University, Changchun 130062, China.
| | - Yaping Yuan
- College of Plant Science, Jilin University, Changchun 130062, China.
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33
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He Y, Li J, Mao W, Zhang D, Liu M, Shan X, Zhang B, Zhu C, Shen J, Deng Z, Wang Z, Yu W, Chen Q, Guo W, Su P, Lv R, Li G, Li G, Pei B, Jiao L, Shen G, Liu Y, Feng Z, Su Y, Xie Y, Di W, Liu X, Yang X, Wang J, Qi J, Liu Q, Han Y, He J, Cai J, Zhang Z, Zhu F, Du D. HLA common and well-documented alleles in China. HLA 2018; 92:199-205. [DOI: 10.1111/tan.13358] [Citation(s) in RCA: 50] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2017] [Revised: 06/22/2018] [Accepted: 07/29/2018] [Indexed: 11/29/2022]
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34
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Jiang Z, Song G, Shan X, Wei Z, Liu Y, Jiang C, Jiang Y, Jin F, Li Y. Association Analysis and Identification of ZmHKT1;5 Variation With Salt-Stress Tolerance. Front Plant Sci 2018; 9:1485. [PMID: 30369939 PMCID: PMC6194160 DOI: 10.3389/fpls.2018.01485] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2018] [Accepted: 09/24/2018] [Indexed: 05/20/2023]
Abstract
The high-affinity potassium transporter (HKT) genes are essential for plant salt stress tolerance. However, there were limited studies on HKTs in maize (Zea mays), and it is basically unknown whether natural sequence variations in these genes are associated with the phenotypic variability of salt tolerance. Here, the characterization of ZmHKT1;5 was reported. Under salt stress, ZmHKT1;5 expression increased strongly in salt-tolerant inbred lines, which accompanied a better-balanced Na+/K+ ratio and preferable plant growth. The association between sequence variations in ZmHKT1;5 and salt tolerance was evaluated in a diverse population comprising 54 maize varieties from different maize production regions of China. Two SNPs (A134G and A511G) in the coding region of ZmHKT1;5 were significantly associated with different salt tolerance levels in maize varieties. In addition, the favorable allele of ZmHKT1; 5 identified in salt tolerant maize varieties effectively endowed plant salt tolerance. Transgenic tobacco plants of overexpressing the favorable allele displayed enhanced tolerance to salt stress better than overexpressing the wild type ZmHKT1;5. Our research showed that ZmHKT1;5 expression could effectively enhance salt tolerance by maintaining an optimal Na+/K+ balance and increasing the antioxidant activity that keeps reactive oxygen species (ROS) at a low accumulation level. Especially, the two SNPs in ZmHKT1;5 might be related with new amino acid residues to confer salt tolerance in maize. Key Message: Two SNPs of ZmHKT1;5 related with salt tolerance were identified by association analysis. Overexpressing ZmHKT1;5 in tobaccos showed that the SNPs might enhance its ability to regulating Na+/K+ homeostasis.
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Affiliation(s)
- Zhilei Jiang
- Jilin Provincial Key Laboratory of Agricultural Biotechnology, Agro-Biotechnology Research Institute, Jilin Academy of Agricultural Sciences, Changchun, China
| | - Guangshu Song
- Jilin Provincial Key Laboratory of Agricultural Biotechnology, Agro-Biotechnology Research Institute, Jilin Academy of Agricultural Sciences, Changchun, China
| | - Xiaohui Shan
- College of Plant Sciences, Jilin University, Changchun, China
- *Correspondence: Xiaohui Shan, Yidan Li,
| | - Zhengyi Wei
- Jilin Provincial Key Laboratory of Agricultural Biotechnology, Agro-Biotechnology Research Institute, Jilin Academy of Agricultural Sciences, Changchun, China
| | - Yanzhi Liu
- Jilin Provincial Key Laboratory of Agricultural Biotechnology, Agro-Biotechnology Research Institute, Jilin Academy of Agricultural Sciences, Changchun, China
| | - Chao Jiang
- School of Life Sciences, Jilin Agricultural University, Changchun, China
| | - Yu Jiang
- Jilin Provincial Key Laboratory of Agricultural Biotechnology, Agro-Biotechnology Research Institute, Jilin Academy of Agricultural Sciences, Changchun, China
| | - Fengxue Jin
- Jilin Provincial Key Laboratory of Agricultural Biotechnology, Agro-Biotechnology Research Institute, Jilin Academy of Agricultural Sciences, Changchun, China
| | - Yidan Li
- Jilin Provincial Key Laboratory of Agricultural Biotechnology, Agro-Biotechnology Research Institute, Jilin Academy of Agricultural Sciences, Changchun, China
- *Correspondence: Xiaohui Shan, Yidan Li,
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35
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Chen L, Shen J, Shan X, Wang F, Kan T, Tang X, Zhao X, Qin Y. Improvement of tricuspid regurgitation after transcatheter ASD closure in older patients. Herz 2017; 43:529-534. [DOI: 10.1007/s00059-017-4594-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2016] [Revised: 05/13/2017] [Accepted: 06/16/2017] [Indexed: 11/30/2022]
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36
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Maeo S, Saito A, Otsuka S, Shan X, Kanehisa H, Kawakami Y. Localization of muscle damage within the quadriceps femoris induced by different types of eccentric exercises. Scand J Med Sci Sports 2017; 28:95-106. [DOI: 10.1111/sms.12880] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/13/2017] [Indexed: 01/22/2023]
Affiliation(s)
- S. Maeo
- Faculty of Sport Sciences; Waseda University; Tokorozawa Saitama Japan
- Research Fellow of Japan Society for the Promotion of Science; Chiyoda Tokyo Japan
| | - A. Saito
- Faculty of Sport Sciences; Waseda University; Tokorozawa Saitama Japan
| | - S. Otsuka
- Faculty of Sport Sciences; Waseda University; Tokorozawa Saitama Japan
| | - X. Shan
- Faculty of Sport Sciences; Waseda University; Tokorozawa Saitama Japan
| | - H. Kanehisa
- Department of Sports and Life Science; National Institute of Fitness and Sports in Kanoya; Kanoya Kagoshima Japan
| | - Y. Kawakami
- Faculty of Sport Sciences; Waseda University; Tokorozawa Saitama Japan
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Thaper D, Vahid S, Nip KM, Moskalev I, Shan X, Frees S, Roberts ME, Ketola K, Harder KW, Gregory-Evans C, Bishop JL, Zoubeidi A. Targeting Lyn regulates Snail family shuttling and inhibits metastasis. Oncogene 2017; 36:3964-3975. [PMID: 28288135 DOI: 10.1038/onc.2017.5] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2016] [Revised: 11/27/2016] [Accepted: 12/27/2016] [Indexed: 02/06/2023]
Abstract
The acquisition of an invasive phenotype by epithelial cells occurs through a loss of cellular adhesion and polarity, heralding a multistep process that leads to metastatic dissemination. Since its characterization in 1995, epithelial-mesenchymal transition (EMT) has been closely linked to the metastatic process. As a defining aspect of EMT, loss of cell adhesion through downregulation of E-cadherin is carried out by several transcriptional repressors; key among them the SNAI family of transcription factors. Here we identify for the first time that Lyn kinase functions as a key modulator of SNAI family protein localization and stability through control of the Vav-Rac1-PAK1 (Vav-Rac1-p21-activated kinase) pathway. Accordingly, targeting Lyn in vitro reduces EMT and in vivo reduces metastasis of primary tumors. We also demonstrate the clinical relevance of targeting Lyn as a key player controlling EMT; patient samples across many cancers revealed a strong negative correlation between Lyn and E-cadherin, and high Lyn expression in metastatic tumors as well as metastasis-prone primary tumors. This work reveals a novel pancancer mechanism of Lyn-dependent control of EMT and further underscores the role of this kinase in tumor progression.
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Affiliation(s)
- D Thaper
- Department of Urology, Vancouver Prostate Centre, University of British Columbia, Vancouver, BC, Canada.,Faculty of Medicine, Department of Urologic Science, University of British Columbia, Vancouver, BC, Canada
| | - S Vahid
- Department of Urology, Vancouver Prostate Centre, University of British Columbia, Vancouver, BC, Canada.,Faculty of Medicine, Department of Urologic Science, University of British Columbia, Vancouver, BC, Canada
| | - K M Nip
- Department of Urology, Vancouver Prostate Centre, University of British Columbia, Vancouver, BC, Canada.,Faculty of Medicine, Department of Urologic Science, University of British Columbia, Vancouver, BC, Canada
| | - I Moskalev
- Department of Urology, Vancouver Prostate Centre, University of British Columbia, Vancouver, BC, Canada
| | - X Shan
- Faculty of Medicine, Department Ophthalmology and Visual Sciences, University of British Columbia, Vancouver, BC, Canada
| | - S Frees
- Department of Urology, Vancouver Prostate Centre, University of British Columbia, Vancouver, BC, Canada
| | - M E Roberts
- Faculty of Science, Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC, Canada
| | - K Ketola
- Department of Urology, Vancouver Prostate Centre, University of British Columbia, Vancouver, BC, Canada
| | - K W Harder
- Faculty of Science, Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC, Canada
| | - C Gregory-Evans
- Faculty of Medicine, Department Ophthalmology and Visual Sciences, University of British Columbia, Vancouver, BC, Canada
| | - J L Bishop
- Department of Urology, Vancouver Prostate Centre, University of British Columbia, Vancouver, BC, Canada
| | - A Zoubeidi
- Department of Urology, Vancouver Prostate Centre, University of British Columbia, Vancouver, BC, Canada.,Faculty of Medicine, Department of Urologic Science, University of British Columbia, Vancouver, BC, Canada
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Abstract
Bone desensitization after mechanical loading is essential for bone to adapt to its mechanical environment. However, the desensitization mechanism is unknown. Previous studies suggest that G protein-coupled receptors (GPCRs), including P2Y and parathyroid hormone receptors, play important roles in osteoblast mechanobiology. Thus, for the present research, we examined the role of G protein-coupled receptor kinase 2 (GRK2) in osteoblast desensitization after exposure to mechanical stimulation. We first showed the existence of osteoblast desensitization after mechanical stimulation based on cytosol Ca2+ and phosphorylated ERK1/2 activities, detected using a fluorescent Ca2+-sensitive dye and western blotting, respectively. We then demonstrated that GRK2 overexpression in MC3T3-E1 cells inhibits flow-induced ERK1/2 phosphorylation, while siRNA knockdown of GRK2 enhances ERK1/2 phosphorylation. Additionally, we found that GRK2 overexpression in MC3T3-E1 cells inhibits cyclooxygenase-2 mRNA expression in the short term and alkaline phosphatase activity in the long term. More importantly, we discovered that GRK2 translocated to the cell membrane shortly after flow stimulation - a step necessary for GPCR desensitization. Previously, we have demonstrated that P2Y2 purinergic receptors, one type of GPCRs, are involved in various flow-induced osteoblastic responses. In this research, we also showed that GRK2 overexpression does not affect ATP release. Accordingly, GRK2 is able to inhibit flow-induced osteoblast responses possibly through desensitizing P2Y2 receptors.
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Affiliation(s)
- Y Xing
- Beijing Key Laboratory of Rehabilitation Technical Aids for Old-Age Disability, National Research Center for Rehabilitation Technical Aids, Beijing, China Department of Orthopaedics and Rehabilitation, The Pennsylvania State University College of Medicine, Hershey, PA, USA
| | | | - X Shan
- Beijing Key Laboratory of Rehabilitation Technical Aids for Old-Age Disability, National Research Center for Rehabilitation Technical Aids, Beijing, China Department of Orthopaedics and Rehabilitation, The Pennsylvania State University College of Medicine, Hershey, PA, USA
| | - L Wang
- Beijing Key Laboratory of Rehabilitation Technical Aids for Old-Age Disability, National Research Center for Rehabilitation Technical Aids, Beijing, China Department of Orthopaedics and Rehabilitation, The Pennsylvania State University College of Medicine, Hershey, PA, USA
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Chen Y, Zhao JY, Shan X, Han XL, Tian SG, Chen FY, Su XT, Sun YS, Huang LY, Han L. A point-prevalence survey of healthcare-associated infection in fifty-two Chinese hospitals. J Hosp Infect 2016; 95:105-111. [PMID: 28007308 DOI: 10.1016/j.jhin.2016.08.010] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2016] [Accepted: 08/10/2016] [Indexed: 11/29/2022]
Abstract
BACKGROUND Healthcare-associated infection (HCAI) represents a major problem for patient safety worldwide. AIM To demonstrate the prevalence, causative agents, and risk factors for HCAI in Chinese hospitals. METHODS A one-day point-prevalence survey was conducted in 52 Chinese hospitals between October 2014 and March 2015. A web-based software system was developed for data entry and management. FINDINGS Among 53,939 patients surveyed, the prevalence of patients with at least one HCAI was 3.7%. Of 2182 HCAI episodes, the most frequently occurring types were lower respiratory tract infections (47.2%), followed by urinary tract infection (12.3%), upper respiratory tract infection (11.0%), and surgical site infection (6.2%). The prevalence of patients with at least one HCAI in critical care units was highest (17.1%). Device-associated infections, including ventilator-associated pneumonia, catheter-associated urinary tract infection, and central catheter-associated bloodstream infection, accounted for only 7.9% of all HCAIs. The most frequently isolated micro-organisms were Pseudomonas aeruginosa [206 infections (9.4%)], Acinetobacter baumannii [172 infections (7.9%)], Klebsiella pneumoniae [160 infections (7.3%)], and Escherichia coli [145 infections (6.6%)]. Of the survey patients (18,206/53,939), 33.8% were receiving at least one antimicrobial agent at the time of the survey. Risk factors for HCAI included older age (≥80 years), male gender, days of hospital admission, admission into a critical care unit, and device utilization. CONCLUSION Our study suggests that the overall prevalence of HCAI in surveyed Chinese hospitals was lower than that reported from most European countries and the USA. More attention should be given to the surveillance and prevention of non-device-associated HCAI in China.
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Affiliation(s)
- Y Chen
- Institute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, China
| | - J Y Zhao
- Institute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, China
| | - X Shan
- School of Public Health, Peking University, Beijing, China
| | - X L Han
- Institute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, China
| | - S G Tian
- Institute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, China
| | - F Y Chen
- Institute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, China
| | - X T Su
- Institute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, China
| | - Y S Sun
- Institute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, China
| | - L Y Huang
- Institute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, China
| | - L Han
- Institute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, China.
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Wang X, Shan X, Xue C, Wu Y, Su S, Li S, Liu H, Jiang Y, Zhang Y, Yuan Y. Isolation and functional characterization of a cold responsive phosphatidylinositol transfer-associated protein, ZmSEC14p, from maize (Zea may L.). Plant Cell Rep 2016; 35:1671-86. [PMID: 27061906 DOI: 10.1007/s00299-016-1980-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2016] [Accepted: 03/31/2016] [Indexed: 05/10/2023]
Abstract
A Sec14-like protein, ZmSEC14p , from maize was structurally analyzed and functionally tested. Overexpression of ZmSEC14p in transgenic Arabidopsis conferred tolerance to cold stress. Sec14-like proteins are involved in essential biological processes, such as phospholipid metabolism, signal transduction, membrane trafficking, and stress response. Here, we reported a phosphatidylinositol transfer-associated protein, ZmSEC14p (accession no. KT932998), isolated from a cold-tolerant maize inbred line using the cDNA-AFLP approach and RACE-PCR method. Full-length cDNA that consisted of a single open reading frame (ORF) encoded a putative polypeptide of 295 amino acids. The ZmSEC14p protein was mainly localized in the nucleus, and its transcript was induced by cold, salt stresses, and abscisic acid (ABA) treatment in maize leaves and roots. Overexpression of ZmSEC14p in transgenic Arabidopsis conferred tolerance to cold stress. This tolerance was primarily displayed by the increased germination rate, root length, plant survival rate, accumulation of proline, activities of antioxidant enzymes, and the reduction of oxidative damage by reactive oxygen species (ROS). ZmSEC14p overexpression regulated the expression of phosphoinositide-specific phospholipase C, which cleaves phosphatidylinositol 4,5-bisphosphate (PIP2) and generates second messengers (inositol 1,4,5-trisphosphate and 1,2-diacylglycerol) in the phosphoinositide signal transduction pathways. Moreover, up-regulation of some stress-responsive genes such as CBF3, COR6.6, and RD29B in transgenic plants under cold stress could be a possible mechanism for enhancing cold tolerance. Taken together, this study strongly suggests that ZmSEC14p plays an important role in plant tolerance to cold stress.
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Affiliation(s)
- Xiaoyu Wang
- College of Plant Science, Jilin University, Changchun, 130062, China
| | - Xiaohui Shan
- College of Plant Science, Jilin University, Changchun, 130062, China
| | - Chunmei Xue
- College of Plant Science, Jilin University, Changchun, 130062, China
| | - Ying Wu
- College of Plant Science, Jilin University, Changchun, 130062, China
| | - Shengzhong Su
- College of Plant Science, Jilin University, Changchun, 130062, China
| | - Shipeng Li
- College of Plant Science, Jilin University, Changchun, 130062, China
| | - Hongkui Liu
- College of Plant Science, Jilin University, Changchun, 130062, China
| | - Yuan Jiang
- College of Plant Science, Jilin University, Changchun, 130062, China
| | - Yanfei Zhang
- College of Plant Science, Jilin University, Changchun, 130062, China
| | - Yaping Yuan
- College of Plant Science, Jilin University, Changchun, 130062, China.
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Shi W, Shan X, Hua H, Zhou D, Cai Z. Integrated profiling of mRNAs and microRNAs to identify potential biomarkers for oral malignant transformation. Int J Oral Maxillofac Surg 2015. [DOI: 10.1016/j.ijom.2015.08.488] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Xie S, Wang K, Xu H, Hua R, Li T, Shan X, Cai Z. Extracapsular dissection versus superficial parotidectomy in treatment of benign parotid tumors: evidence from 3194 patients. Int J Oral Maxillofac Surg 2015. [DOI: 10.1016/j.ijom.2015.08.873] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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43
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Liu B, Su S, Wu Y, Li Y, Shan X, Li S, Liu H, Dong H, Ding M, Han J, Yuan Y. Histological and transcript analyses of intact somatic embryos in an elite maize (Zea mays L.) inbred line Y423. Plant Physiol Biochem 2015; 92:81-91. [PMID: 25931320 DOI: 10.1016/j.plaphy.2015.04.011] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2014] [Accepted: 04/11/2015] [Indexed: 06/04/2023]
Abstract
Intact somatic embryos were obtained from an elite maize inbred line Y423, bred in our laboratory. Using 13-day immature embryos after self-pollination as explants, and after 4-5 times subculture, a large number of somatic embryos were detected on the surface of the embryonic calli on the medium. The intact somatic embryos were transferred into the differential medium, where the plantlets regenerated with shoots and roots forming simultaneously. Histological analysis and scanning electron micrographs confirmed the different developmental stages of somatic embryogenesis, including globular-shaped embryo, pear-shaped embryo, scutiform embryo, and mature embryo. cDNA-amplified fragment length polymorphism (cDNA-AFLP) was used for comparative transcript profiling between embryogenic and non-embryogenic calli of a new elite maize inbred line Y423 during somatic embryogenesis. Differentially expressed genes were cloned and sequenced. Gene Ontology analysis of 117 candidate genes indicated their involvement in cellular component, biological process and molecular function. Nine of the candidate genes were selected. The changes in their expression levels during embryo induction and regeneration were analyzed in detail using quantitative real-time PCR. Two full-length cDNA sequences, encoding ZmSUF4 (suppressor of fir 4-like protein) and ZmDRP3A (dynamin-related protein), were cloned successfully from intact somatic embryos of the elite inbred maize line Y423. Here, a procedure for maize plant regeneration from somatic embryos is described. Additionally, the possible roles of some of these genes during the somatic embryogenesis has been discussed. This study is a systematic analysis of the cellular and molecular mechanism during the formation of intact somatic embryos in maize.
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Affiliation(s)
- Beibei Liu
- College of Plant Science, Jilin University, Changchun 130062, China.
| | - Shengzhong Su
- College of Plant Science, Jilin University, Changchun 130062, China.
| | - Ying Wu
- College of Plant Science, Jilin University, Changchun 130062, China.
| | - Ying Li
- College of Plant Science, Jilin University, Changchun 130062, China.
| | - Xiaohui Shan
- College of Plant Science, Jilin University, Changchun 130062, China.
| | - Shipeng Li
- College of Plant Science, Jilin University, Changchun 130062, China.
| | - Hongkui Liu
- College of Plant Science, Jilin University, Changchun 130062, China.
| | - Haixiao Dong
- College of Plant Science, Jilin University, Changchun 130062, China.
| | - Meiqi Ding
- College of Plant Science, Jilin University, Changchun 130062, China.
| | - Junyou Han
- College of Plant Science, Jilin University, Changchun 130062, China.
| | - Yaping Yuan
- College of Plant Science, Jilin University, Changchun 130062, China.
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Negahdar M, Shultz D, Eyben R, Fasola C, Yu A, Tian L, Fleischmann D, Gable L, Shan X, Diehn M, Loo B, Maxim P. Noninvasive Pulmonary Nodule Elastometry by CT and Deformable Image Registration. Int J Radiat Oncol Biol Phys 2014. [DOI: 10.1016/j.ijrobp.2014.08.145] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Jia Y, Li W, Liu N, Zhang K, Gong Z, Li D, Wang L, Wang D, Jing Y, Wang J, Shan X. Prevalence of platelet-specific antibodies and efficacy of crossmatch-compatible platelet transfusions in refractory patients. Transfus Med 2014; 24:406-10. [DOI: 10.1111/tme.12157] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2014] [Revised: 07/23/2014] [Accepted: 09/06/2014] [Indexed: 11/28/2022]
Affiliation(s)
- Y. Jia
- Department of HLA; Beijing Red Cross Blood Center; Beijing P. R. China
| | - W. Li
- Department of HLA; Beijing Red Cross Blood Center; Beijing P. R. China
| | - N. Liu
- Department of HLA; Beijing Red Cross Blood Center; Beijing P. R. China
| | - K. Zhang
- Department of HLA; Beijing Red Cross Blood Center; Beijing P. R. China
| | - Z. Gong
- Department of HLA; Beijing Red Cross Blood Center; Beijing P. R. China
| | - D. Li
- Department of HLA; Beijing Red Cross Blood Center; Beijing P. R. China
| | - L. Wang
- Department of HLA; Beijing Red Cross Blood Center; Beijing P. R. China
| | - D. Wang
- Department of HLA; Beijing Red Cross Blood Center; Beijing P. R. China
| | - Y. Jing
- Department of HLA; Beijing Red Cross Blood Center; Beijing P. R. China
| | - J. Wang
- Department of HLA; Beijing Red Cross Blood Center; Beijing P. R. China
| | - X. Shan
- Department of HLA; Beijing Red Cross Blood Center; Beijing P. R. China
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47
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Negahdar M, Shultz D, Eyben R, Fasola C, Yu A, Tian L, Fleischmann D, Gable L, Shan X, Diehn M, Loo B, Maxim P. Noninvasive Pulmonary Nodule Elastometry by CT and Deformable Image Registration. Int J Radiat Oncol Biol Phys 2014. [DOI: 10.1016/j.ijrobp.2014.05.1857] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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48
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Negahdar M, Yamamoto T, Shultz D, Gable L, Shan X, Mittra E, Diehn M, Maxim P, Loo B. First in Human High-Resolution Imaging of Regional Lung Function by Single Energy Xenon CT Compared to Ventilation SPECT. Int J Radiat Oncol Biol Phys 2014. [DOI: 10.1016/j.ijrobp.2014.05.1858] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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49
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Negahdar M, Yamamoto T, Shultz D, Gable L, Shan X, Mittra E, Diehn M, Loo B, Maxim P. TU-A-12A-02: Novel Lung Ventilation Imaging with Single Energy CT After Single Inhalation of Xenon: Comparison with SPECT Ventilation Images. Med Phys 2014. [DOI: 10.1118/1.4889248] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Viringipurampeer IA, Shan X, Gregory-Evans K, Zhang JP, Mohammadi Z, Gregory-Evans CY. Rip3 knockdown rescues photoreceptor cell death in blind pde6c zebrafish. Cell Death Differ 2014; 21:665-75. [PMID: 24413151 DOI: 10.1038/cdd.2013.191] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2013] [Revised: 11/15/2013] [Accepted: 11/22/2013] [Indexed: 01/03/2023] Open
Abstract
Achromatopsia is a progressive autosomal recessive retinal disease characterized by early loss of cone photoreceptors and later rod photoreceptor loss. In most cases, mutations have been identified in CNGA3, CNGB3, GNAT2, PDE6C or PDE6H genes. Owing to this genetic heterogeneity, mutation-independent therapeutic schemes aimed at preventing cone cell death are very attractive treatment strategies. In pde6c(w59) mutant zebrafish, cone photoreceptors expressed high levels of receptor-interacting protein kinase 1 (RIP1) and receptor-interacting protein kinase 3 (RIP3) kinases, key regulators of necroptotic cell death. In contrast, rod photoreceptor cells were alternatively immunopositive for caspase-3 indicating activation of caspase-dependent apoptosis in these cells. Morpholino gene knockdown of rip3 in pde6c(w59) embryos rescued the dying cone photoreceptors by inhibiting the formation of reactive oxygen species and by inhibiting second-order neuron remodelling in the inner retina. In rip3 morphant larvae, visual function was restored in the cones by upregulation of the rod phosphodiesterase genes (pde6a and pde6b), compensating for the lack of cone pde6c suggesting that cones are able to adapt to their local environment. Furthermore, we demonstrated through pharmacological inhibition of RIP1 and RIP3 activity that cone cell death was also delayed. Collectively, these results demonstrate that the underlying mechanism of cone cell death in the pde6c(w59) mutant retina is through necroptosis, whereas rod photoreceptor bystander death occurs through a caspase-dependent mechanism. This suggests that targeting the RIP kinase signalling pathway could be an effective therapeutic intervention in retinal degeneration patients. As bystander cell death is an important feature of many retinal diseases, combinatorial approaches targeting different cell death pathways may evolve as an important general principle in treatment.
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Affiliation(s)
- I A Viringipurampeer
- Department of Ophthalmology and Visual Sciences, University of British Columbia, Vancouver, BC V5Z 3N9, Canada
| | - X Shan
- Department of Ophthalmology and Visual Sciences, University of British Columbia, Vancouver, BC V5Z 3N9, Canada
| | - K Gregory-Evans
- Department of Ophthalmology and Visual Sciences, University of British Columbia, Vancouver, BC V5Z 3N9, Canada
| | - J P Zhang
- Department of Ophthalmology and Visual Sciences, University of British Columbia, Vancouver, BC V5Z 3N9, Canada
| | - Z Mohammadi
- Department of Ophthalmology and Visual Sciences, University of British Columbia, Vancouver, BC V5Z 3N9, Canada
| | - C Y Gregory-Evans
- Department of Ophthalmology and Visual Sciences, University of British Columbia, Vancouver, BC V5Z 3N9, Canada
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