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Su S, Cui MY, Gui Z, Guo QQ, Ren H, Ma SF, Mu L, Yu JF, Fu SY, Qi DD. First detection of Candidatus Rickettsia tarasevichiae in Hyalomma marginatum ticks. PLoS One 2024; 19:e0296757. [PMID: 38306367 PMCID: PMC10836667 DOI: 10.1371/journal.pone.0296757] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2023] [Accepted: 12/19/2023] [Indexed: 02/04/2024] Open
Abstract
Ticks are important vectors of zoonotic diseases and play a major role in the circulation and transmission of many rickettsial species. The aim of this study was to investigate the carriage of Candidatus Rickettsia tarasevichiae (CRT) in a total of 1168 ticks collected in Inner Mongolia to elucidate the potential public health risk of this pathogen, provide a basis for infectious disease prevention, control and prediction and contribute diagnostic ideas for clinical diseases that present with fever in populations exposed to ticks. A total of four tick species, Haemaphysalis concinna (n = 21), Dermacentor nuttalli (n = 122), Hyalomma marginatum (n = 148), and Ixodes persulcatus (n = 877), were collected at nine sampling sites in Inner Mongolia, China, and identified by morphological and molecular biological methods. Reverse transcription PCR targeting the 16S ribosomal RNA (rrs), gltA, groEL, ompB and Sca4 genes was used to detect CRT DNA. Sequencing was used for pathogen species confirmation. The molecular epidemiological analysis showed that three species of ticks were infected with CRT, and the overall positive rate was as high as 42%. The positive rate of I. persulcatus collected in Hinggan League city was up to 96%, and that of I. persulcatus collected in Hulun Buir city was 50%. The pool positive rates of D. nuttalli and H. marginatum collected in Bayan Nur city and H. concinna collected in Hulun Buir city were 0%, 28% and 40%, respectively. This study revealed the high prevalence of CRT infection in ticks from Inner Mongolia and the first confirmation of CRT detected in H. marginatum in China. The wide host range and high infection rate in Inner Mongolia may dramatically increase the exposure of CRT to humans and other vertebrates. The role of H. marginatum in the transmission of rickettsiosis and its potential risk to public health should be further considered.
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Affiliation(s)
- Si Su
- Graduate School, Inner Mongolia Medical University, Hohhot, Inner Mongolia, China
| | - Meng-Yu Cui
- Graduate School, Inner Mongolia Medical University, Hohhot, Inner Mongolia, China
| | - Zheng Gui
- First Hospital of Jilin University, Changchun, China
| | - Qi-Qi Guo
- Graduate School, Inner Mongolia Medical University, Hohhot, Inner Mongolia, China
| | - Hong Ren
- First Clinical College, Inner Mongolia Medical University, Hohhot, Inner Mongolia, China
| | - Shi-Fa Ma
- Laboratory of Basic and Clinical Psychiatry, The Third People’s Hospital of Hulunbuir City, Hulunbuir, Inner Mongolia, China
| | - Lan Mu
- School of Basic Medicine, Inner Mongolia Medical University, Hohhot Inner Mongolia, China
| | - Jing-Feng Yu
- School of Basic Medicine, Inner Mongolia Medical University, Hohhot Inner Mongolia, China
| | - Shao-Yin Fu
- Inner Mongolia Academy of Agricultural & Animal Husbandry Science, Hohhot, Inner Mongolia, China
| | - Dong-Dong Qi
- Laboratory of Basic and Clinical Psychiatry, The Third People’s Hospital of Hulunbuir City, Hulunbuir, Inner Mongolia, China
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Su S, Hong M, Cui MY, Gui Z, Ma SF, Wu L, Xing LL, Mu L, Yu JF, Fu SY, Gao RJ, Qi DD. Microbial diversity of ticks and a novel typhus group Rickettsia species (Rickettsiales bacterium Ac37b) in Inner Mongolia, China. Parasite 2023; 30:58. [PMID: 38084939 PMCID: PMC10714680 DOI: 10.1051/parasite/2023057] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2023] [Accepted: 11/20/2023] [Indexed: 12/18/2023] Open
Abstract
Ticks can carry multiple pathogens, and Inner Mongolia's animal husbandry provides excellent environmental conditions for ticks. This study characterized the microbiome of ticks from different geographical locations in Inner Mongolia; 905 Dermacentor nuttalli and 36 Ixodes persulcatus were collected from sheep in three main pasture areas and from bushes within the forested area. Mixed DNA samples were prepared from three specimens from each region and tick species. Microbial diversity was analyzed by 16S rRNA sequencing, and α and β diversity were determined. The predominant bacterial genera were Rickettsia (54.60%), including Rickettsiales bacterium Ac37b (19.33%) and other Rickettsia (35.27%), Arsenophonus (11.21%), Candidatus Lariskella (10.84%), and Acinetobacter (7.17%). Rickettsia bellii was identified in I. persulcatus, while Rickettsiales bacterium Ac37b was found in D. nuttalli from Ordos and Chifeng. Potential Rickettsia and Anaplasma coinfections were observed in the Ordos region. Tick microbial diversity analysis in Inner Mongolia suggests that sheep at the sampling sites were exposed to multiple pathogens.
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Affiliation(s)
- Si Su
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Graduate School, Inner Mongolia Medical University Hohhot 010059 Inner Mongolia China
| | - Mei Hong
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School of Basic Medicine, Inner Mongolia Medical University Hohhot 010110 Inner Mongolia China
| | - Meng-Yu Cui
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Graduate School, Inner Mongolia Medical University Hohhot 010059 Inner Mongolia China
| | - Zheng Gui
- First Hospital of Jilin University Changchun 130021 China
| | - Shi-Fa Ma
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Hulunbuir Mental Health Center Hulunbuir 022150 Inner Mongolia China
| | - Lin Wu
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Beijing Guoke Biotechnology Co., Ltd 102200 Beijing China
| | - Li-Li Xing
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Department of Infection Control, Second Affiliated Hospital of Inner Mongolia Medical University Hohhot Inner Mongolia Autonomous Region 010000 China
| | - Lan Mu
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School of Basic Medicine, Inner Mongolia Medical University Hohhot 010110 Inner Mongolia China
| | - Jing-Feng Yu
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School of Basic Medicine, Inner Mongolia Medical University Hohhot 010110 Inner Mongolia China
| | - Shao-Yin Fu
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Inner Mongolia Academy of Agricultural & Animal Husbandry Science Hohhot 010031 Inner Mongolia China
| | - Rui-Juan Gao
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School of Basic Medicine, Inner Mongolia Medical University Hohhot 010110 Inner Mongolia China
| | - Dong-Dong Qi
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Hulunbuir Mental Health Center Hulunbuir 022150 Inner Mongolia China
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Wang S, Wang J, Gui Z, Liu L, Xu S, Guo Y, Zhou T, Cao J, Gao R, Xie F, He A, Luo H. Model construction and theoretical evaluation of the performance improvement of acetone-butanol-ethanol extractive fermentation by adding surfactant. Bioprocess Biosyst Eng 2023; 46:1837-1845. [PMID: 37924351 DOI: 10.1007/s00449-023-02942-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2023] [Accepted: 10/28/2023] [Indexed: 11/06/2023]
Abstract
Severe butanol toxicity to the metabolism of solventogenic clostridia significantly impede the application of fermentative butanol as a biofuel. Liquid-liquid extraction is an efficient method to reduce the butanol toxicity by in-situ removing it in the extractant phase. Butanol mass transfer into extractant phase in static acetone-butanol-ethanol (ABE) extractive fermentation with biodiesel as the extractant could be enhanced by adding a tiny amount of surfactant such as tween-80. In the case of corn-based ABE extractive fermentation by Clostridium acetobutylicum ATCC 824 using biodiesel originated from waste cooking oil as extractant, addition of 0.14% (w/v) tween-80 could increase butanol production in biodiesel and total solvents production by 21% and 17%, respectively, compared to those of control under non-surfactant existence. Furthermore, a mathematical model was developed to elucidate the mechanism of enhanced ABE extractive fermentation performance. The results indicated that the mass transfer improvement was obtained by effectively altering the physical properties of the self-generated bubbles during ABE extractive fermentation, such as reducing bubble size and extending its retention time in extractant phase, etc. Overall, this study provided an efficient approach for enhancing biobutanol production by integration of bioprocess optimization and model interpretation.
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Affiliation(s)
- Shijie Wang
- Jiangsu Provincial Agricultural Green and Low Carbon Production Technology Engineering Research Center, School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huaian, 223003, China
| | - Jiabin Wang
- Jiangsu Provincial Agricultural Green and Low Carbon Production Technology Engineering Research Center, School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huaian, 223003, China
| | - Zheng Gui
- Jiangsu Provincial Agricultural Green and Low Carbon Production Technology Engineering Research Center, School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huaian, 223003, China
| | - Lina Liu
- Jiangsu Provincial Agricultural Green and Low Carbon Production Technology Engineering Research Center, School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huaian, 223003, China
| | - Shuo Xu
- Jiangsu Provincial Agricultural Green and Low Carbon Production Technology Engineering Research Center, School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huaian, 223003, China
| | - Yufen Guo
- Jiangsu Provincial Agricultural Green and Low Carbon Production Technology Engineering Research Center, School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huaian, 223003, China
| | - Tairan Zhou
- Jiangsu Provincial Agricultural Green and Low Carbon Production Technology Engineering Research Center, School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huaian, 223003, China
| | - Jin Cao
- Jiangsu Provincial Agricultural Green and Low Carbon Production Technology Engineering Research Center, School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huaian, 223003, China
| | - Ruihong Gao
- Jiangsu Provincial Agricultural Green and Low Carbon Production Technology Engineering Research Center, School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huaian, 223003, China
| | - Fang Xie
- Jiangsu Provincial Agricultural Green and Low Carbon Production Technology Engineering Research Center, School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huaian, 223003, China
| | - Aiyong He
- Jiangsu Key Laboratory for Biomass-Based Energy and Enzyme Technology, Jiangsu Collaborative Innovation Center of Regional Modern Agriculture & Environmental Protection, School of Chemistry and Chemical Engineering, Huaiyin Normal University, Huaian, 223300, China
| | - Hongzhen Luo
- Jiangsu Provincial Agricultural Green and Low Carbon Production Technology Engineering Research Center, School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huaian, 223003, China.
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Luo H, Zhou T, Cao J, Gao L, Wang S, Gui Z, Shi Y, Xie F, Yang R. Utilization of lignocellulosic biomass by glycerol organosolv pretreatment for biobutanol production integrated with bioconversion of residual glycerol into value-added products. Bioresour Technol 2023; 387:129661. [PMID: 37573976 DOI: 10.1016/j.biortech.2023.129661] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2023] [Revised: 08/05/2023] [Accepted: 08/09/2023] [Indexed: 08/15/2023]
Abstract
Glycerol organosolv pretreatment (GOP) is considered an efficient method to deconstruct lignocellulose for producing fermentable sugars. Herein, the liquid fraction containing glycerol after GOP was utilized for recycled pretreatment of corn stover (CS) for four cycles. Enzymatic yield of glucose after recycled pretreatment was enhanced by 2.4-3.5 folds compared with untreated CS. Meanwhile, residual glycerol was used as carbon source for cultivation of Pichia pastoris to obtain high cell-density, and a final titer of 1.3 g/L human lysozyme was produced by P. pastoris under low temperature methanol induction strategy. Additionally, the pretreated CS was mixed with cassava as fermentable substrates for butanol production by wild-type Clostridium acetobutylicum ATCC 824. Final butanol production of 13.9 g/L was obtained from mixed substrates (25%:75% of CS/cassava) at 10% solids loading by simultaneous saccharification and fermentation. Overall, integration of residual glycerol utilization and butanol production by microbial fermentation provided an efficient strategy for biorefinery.
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Affiliation(s)
- Hongzhen Luo
- School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huaian 223003, China.
| | - Tairan Zhou
- School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huaian 223003, China
| | - Jin Cao
- School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huaian 223003, China
| | - Lei Gao
- School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huaian 223003, China
| | - Shijie Wang
- School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huaian 223003, China
| | - Zheng Gui
- School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huaian 223003, China
| | - Yongjiang Shi
- School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huaian 223003, China
| | - Fang Xie
- School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huaian 223003, China
| | - Rongling Yang
- School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huaian 223003, China
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Gui Z, Cai H, Wu L, Miao Q, Yu JF, Cai T, Mao R. Visual closed dumbbell-mediated isothermal amplification (CDA) for on-site detection of Rickettsia raoultii. PLoS Negl Trop Dis 2022; 16:e0010747. [PMID: 36084136 PMCID: PMC9491570 DOI: 10.1371/journal.pntd.0010747] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2022] [Revised: 09/21/2022] [Accepted: 08/18/2022] [Indexed: 11/28/2022] Open
Abstract
Spotted fever group (SFG) rickettsioses are important zoonoses, threatening human health seriously and gradually attracting more attention in the world. SFG rickettsiae are classified as neglected pathogens. If these pathogens are detected at all, they are usually recognized very late in the infection through indirect detection of specific antibodies. Previous studies have shown that Rickettsia raoultii (R. raoultii), a member of the SFG rickettsiae, occurs with increasing incidence in remote countries. Therefore, a rapid detection method for R. raoultii is in urgently need. In this study, a R. raoultii diagnosis method by closed dumbbell-mediated isothermal amplification (R-CDA) assay targeting a conserved sequence of the outer membrane protein A (OmpA) gene with high sensitivity and specificity was developed. This assay offered a rapid and simple method for on-site detection of R. raoultii. Firstly, four pairs of R-CDA primers were designed and the optimum primer set was selected to amplify target gene specifically and effectively. Then, a pair of outer primer was designed to accelerate the reaction based on the inner primers to establish the RO-CDA reaction. In addition, the results of real-time amplification curves, melting curves and end-point colorimetric judgements showed that the established visual RO-CDA reaction could accurately detect R. raoultii without cross-reaction with other closely related pathogens. Furthermore, the detection limit of visual RO-CDA assay was 10 copies/μL, which was feasible for on-site detection with merits of easy-operation, rapidity, high sensitivity, and specificity. In conclusion, the developed RO-CDA detection method could be helpful for pathogen screening and epidemic prevention at the point of care. Spotted fever group (SFG) rickettsioses are important neglected zoonoses throughout the world, with expanding known distribution, among which R. raoultii is an emerging member. As the clinical symptoms of R. raoultii is similar to other diseases, the accurate diagnosis of the pathogen based on the detection of genome plays a vital role in effective treatment and control at low infection levels. Due to the lack of on-site detection technology of Rickettsia raoultii in remote areas, the pathogen can only be treated in the late infection stage with specific clinical symptoms. Closed dumbbell-mediated isothermal amplification (CDA) is a method that rapidly amplifies nucleic acids under isothermal condition, which can help to resolve the problem of point of care detection for R. raoultii. The established R. raoultii detection approach based on CDA was feasible for on-site detection with merits of easy-operation, rapidity, high sensitivity, and specificity. At last, compared with PCR and LAMP, CDA method is simpler and more efficient to detect R. raoultii, which helps to improve the efficiency of detection and strengthen the prevention and control of this neglected but widely distributed disease.
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Affiliation(s)
- Zheng Gui
- Key Laboratory of Diagnosis and Treatment of Digestive System Tumors of Zhejiang Province, Hwa Mei Hospital, University of Chinese Academy of Sciences, Ningbo, China
- Ningbo Institute of Life and Health Industry, University of Chinese Academy of Sciences, Ningbo, China
| | - Hao Cai
- Key Laboratory of Diagnosis and Treatment of Digestive System Tumors of Zhejiang Province, Hwa Mei Hospital, University of Chinese Academy of Sciences, Ningbo, China
- Ningbo Institute of Life and Health Industry, University of Chinese Academy of Sciences, Ningbo, China
| | - Lin Wu
- Graduate School, Inner Mongolia Medical University, Hohhot, Inner Mongolia, China
| | - Qing Miao
- Key Laboratory of Diagnosis and Treatment of Digestive System Tumors of Zhejiang Province, Hwa Mei Hospital, University of Chinese Academy of Sciences, Ningbo, China
- Ningbo Institute of Life and Health Industry, University of Chinese Academy of Sciences, Ningbo, China
| | - Jing feng Yu
- Department of Parasitology, Inner Mongolia Medical University, Hohhot, Inner Mongolia, China
- * E-mail: (JY); (TC); (RM)
| | - Ting Cai
- Key Laboratory of Diagnosis and Treatment of Digestive System Tumors of Zhejiang Province, Hwa Mei Hospital, University of Chinese Academy of Sciences, Ningbo, China
- Ningbo Institute of Life and Health Industry, University of Chinese Academy of Sciences, Ningbo, China
- * E-mail: (JY); (TC); (RM)
| | - Rui Mao
- Key Laboratory of Diagnosis and Treatment of Digestive System Tumors of Zhejiang Province, Hwa Mei Hospital, University of Chinese Academy of Sciences, Ningbo, China
- Ningbo Institute of Life and Health Industry, University of Chinese Academy of Sciences, Ningbo, China
- * E-mail: (JY); (TC); (RM)
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Gui Z, Cai H, Qi DD, Zhang S, Fu SY, Yu JF, Si XY, Cai T, Mao R. Identification and genetic diversity analysis of Rickettsia in Dermacentor nuttalli within inner Mongolia, China. Parasit Vectors 2022; 15:286. [PMID: 35934699 PMCID: PMC9358909 DOI: 10.1186/s13071-022-05387-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Accepted: 07/11/2022] [Indexed: 11/10/2022] Open
Abstract
Abstract
Background
The genus Rickettsia contains the lineages spotted fever group (SFG), typhus group (TG), and transitional group (TRG). The spotted fever group Rickettsia (SFGR) is transmitted by ticks. The tick species Dermacentor nuttalli is considered the main vector carrying SFGR in Inner Mongolia. Studying the genetic diversity and population structure of Rickettsia is essential for developing effective control strategies and predicting evolutionary trends of Rickettsia.
Methods
In 2019 we collected 408 D. nuttalli in the Inner Mongolia Autonomous Region, detected the percentage of Rickettsia-positive specimens, and characterized the haplotypes. From the Rickettsia-positive ticks, the gltA and ompA genes were extracted, amplified, and sequenced.
Results
Ten haplotypes of the gltA gene and 22 haplotypes of the ompA gene were obtained. The phylogenetic analysis showed that the haplotypes G1–G7 and G9 of the gltA gene cluster with Rickettsia raoultii, while G8 and G10 cluster with Rickettsia sibirica. Haplotypes O1–O15, O18 and O20–O22 of the ompA gene cluster with R. raoultii, while O16 and O19 cluster with R. sibirica. The average haplotype diversity was 0.3 for gltA and 0.7 for ompA. The average nucleotide diversity was greater than 0.05. Neutrality tests were nonsignificant for Tajima’s D results and Fu’s Fs results. The fixation index values (FST) showed that the degree of genetic differentiation between most sampled populations was small (FST < 0.05), whereas some populations showed a medium (FST > 0.05) or large (FST > 0.15) degree of differentiation. Analysis of molecular variance (AMOVA) revealed that the variation within populations was greater than that between populations. The mismatch analysis of Rickettsia showed double peaks.
Conclusions
We found two Rickettsia spp. (R. raoultii and R. sibirica). The high genetic disparity of Rickettsia allows for easy adaption to different environments. Genetic differentiation between populations is small, and Rickettsia populations do not show a geographically differentiated structure. The high rates of retention and infection of Rickettsia in D. nuttalli together with the animal husbandry exchange in Inner Mongolia gradually led to the harmonization of genetic characteristics of Rickettsia across various regions. Overall, the significant genetic diversity and geographical structure of Rickettsia in D. nuttalli are critical for SFGR control.
Graphical Abstract
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Gui Z, Wu L, Cai H, Mu L, Yu JF, Fu SY, Si XY. Genetic diversity analysis of Dermacentor nuttalli within Inner Mongolia, China. Parasit Vectors 2021; 14:131. [PMID: 33648549 PMCID: PMC7923491 DOI: 10.1186/s13071-021-04625-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2020] [Accepted: 02/03/2021] [Indexed: 11/18/2022] Open
Abstract
Background Ticks (Arthropoda, Ixodida), after mosquitoes, are the second most prevalent vector of infectious diseases. They are responsible for spreading a multitude of pathogens and threatening the health and welfare of animals and human beings. However, given the history of tick-borne pathogen infections in the Inner Mongolia Autonomous Region of China, surprisingly, neither the genetic diversity nor the spatial distribution of haplotypes within ticks has been studied. Methods We characterized the haplotype distribution of Dermacentor nuttalli in four main pastoral areas of the Inner Mongolia Autonomous Region, by sampling 109 individuals (recovered from sheep) in April–August 2019. The 16S rRNA gene, cytochrome c oxidase subunit I (COI), and the internal transcribed spacer 2 region (ITS2) were amplified and sequenced from extracted DNA. Results Twenty-six haplotypes were identified using 16S rRNA sequences, 57 haplotypes were identified with COI sequences, and 75 haplotypes were identified with ITS2 sequences. Among the three genes, total haplotype diversity was greater than 0.7, while total nucleotide diversity was greater than 0.06. Neutrality tests revealed a significantly negative Tajima’s D result, while Fu's Fs was not significantly positive. Fixation index values (FST) indicated that the degree of genetic differentiation among some sampled populations was small, while for others it was moderate. Analysis of molecular variance (AMOVA) revealed that the variation within populations was greater than that among populations. The mismatch analysis of D. nuttalli exhibited double peaks. Conclusion The genetic diversity of D. nuttalli populations in our region can likely adapt to different geographical environments, thereby leading to genetic diversity, and creating genetic differentiation among different populations. However, genetic differentiation is cryptic and does not form a pedigree geographical structure.![]()
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Affiliation(s)
- Zheng Gui
- Graduate School, Inner Mongolia Medical University, Hohhot, 010059, Inner Mongolia, China
| | - Lin Wu
- Graduate School, Inner Mongolia Medical University, Hohhot, 010059, Inner Mongolia, China
| | - Hao Cai
- Graduate School, Inner Mongolia Medical University, Hohhot, 010059, Inner Mongolia, China
| | - Lan Mu
- Department of Parasitology, Inner Mongolia Medical University, Hohhot, 010110, Inner Mongolia, China.
| | - Jing-Feng Yu
- Department of Parasitology, Inner Mongolia Medical University, Hohhot, 010110, Inner Mongolia, China.
| | - Shao-Yin Fu
- Inner Mongolia Academy of Agricultural & Animal Husbandry Science, Hohhot, 010031, Inner Mongolia, China.
| | - Xiao-Yan Si
- Inner Mongolia Center for Disease Control and Prevention, Hohhot, 010000, Inner Mongolia, China.
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Tian R, Wang J, Yan H, Wu J, Xu Q, Zhan X, Gui Z, Ding M, He J. Differential expression of miR16 in glioblastoma and glioblastoma stem cells: their correlation with proliferation, differentiation, metastasis and prognosis. Oncogene 2017. [PMID: 28628119 PMCID: PMC5658672 DOI: 10.1038/onc.2017.182] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
The function of miR16 in multiforme glioblastoma multiforme (GBM) and its stem cells (GSCs) remains elusive. To this end, we investigated the patterns of miR16 expression in these cells and their correlation with malignant behaviors and clinical outcomes. The levels of miR16 and its targeted genes in tumor tissue of GBM and GBM SGH44, U87, U251 cells as well as their stem cell counterparts were measured by qRT–PCR or western blot or immunohistochemistry. Luciferase reporter assay was used to confirm the binding of miR16 to 3′-UTR of its target genes. The effects of miR16 on malignant behaviors were investigated, including tumor cell viability, soft-agar colony formation, GSCs Matrigel colony forming and migration and invasion as well as nude mice xenograft model. Differentially expression patterns of miR16 in glioblastoma cells and GSCs cells were found in this study. Changes of miR16 targeted genes, Bcl2 (B cell lymphoma 2), CDK6 (Cyclin-dependent kinase 6), CCND1 (cyclin D1), CCNE1 (cyclin E1) and SOX5 were confirmed in glioblastoma cell lines and tissue specimens. In vitro and in vivo studies showed that tumor cell proliferation was inhibited by miR16 mimic, but enhanced by miR16 inhibitor. The expression level of miR16 positively correlates with GSCs differentiation, but negatively with the abilities of migration, motility, invasion and colony formation in glioblastoma cells. The inhibitory effects of miR16 on its target genes were also found in nude mice xenograft model. Our findings revealed that the miR16 functions as a tumor suppressor in GSCs and its association with prognosis in GBM.
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Affiliation(s)
- R Tian
- Department of Pathology, Anhui Provincial Hospital affiliated to Anhui Medical University and Anhui Provincial Cancer Hospital, Hefei, China
| | - J Wang
- Department of Pathology, Anhui Provincial Hospital affiliated to Anhui Medical University and Anhui Provincial Cancer Hospital, Hefei, China
| | - H Yan
- Department of Pathology, Anhui Provincial Hospital affiliated to Anhui Medical University and Anhui Provincial Cancer Hospital, Hefei, China
| | - J Wu
- Department of Pathology, Anhui Provincial Hospital affiliated to Anhui Medical University and Anhui Provincial Cancer Hospital, Hefei, China
| | - Q Xu
- Department of Pathology, Anhui Provincial Hospital affiliated to Anhui Medical University and Anhui Provincial Cancer Hospital, Hefei, China
| | - X Zhan
- Department of Pathology, Anhui Provincial Hospital affiliated to Anhui Medical University and Anhui Provincial Cancer Hospital, Hefei, China
| | - Z Gui
- Department of Pathology, Anhui Provincial Hospital affiliated to Anhui Medical University and Anhui Provincial Cancer Hospital, Hefei, China
| | - M Ding
- Department of Pathology, Anhui Provincial Hospital affiliated to Anhui Medical University and Anhui Provincial Cancer Hospital, Hefei, China
| | - J He
- Department of Pathology, Anhui Provincial Hospital affiliated to Anhui Medical University and Anhui Provincial Cancer Hospital, Hefei, China
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Gui Z, Liu HQ, Wang Y, Yuan QH, Xin N, Zhang X, Li XL, Pi YS, Gao JM. Detection of the genetic variation of polygalacturonase-inhibiting protein gene 2 in autotetraploid alfalfa (Medicago sativa) using an improved SSCP technique. Genet Mol Res 2014; 13:10184-93. [PMID: 25501230 DOI: 10.4238/2014.december.4.13] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
In this study, 2 approaches were adopted to obtain good single-strand conformation polymorphism (SSCP) data for autotetraploid alfalfa; primers were added to PCR products, and fluorescent-labeled primers were utilized. PCR-SSCP conditions for a 331-bp fragment in the coding region of polygalacturonase-inhibiting protein gene 2 in alfalfa (MsPGIP2) were optimized, and the results showed that the best SSCP gel pattern could be obtained when the loading mixture was made by mixing 1 μL PCR products, 0.2 to 0.8 μL unlabeled primers (50 μM) and 4 to 16 μL loading buffer. Furthermore, the use of the fluorescent-labeled primers resulted in 2 separated electrophoresis images from 2 complementary single DNA strands, thus making the determination of alleles and idiotypes a relatively easy task. In addition, the results of sequencing prove that the determination of alleles and idiotypes were accurate based on SSCP analysis. Finally, a total of 9 alleles with 18 SNP sites were identified for MsPGIP2 in the alfalfa variety 'Algonquin'. In conclusion, MsPGIP2 possessed great genetic variation, and the addition of primers to the PCR products in combination with the fluorescent labeling of primers could significantly improve the sensitivity and resolution of SSCP analysis. This technique could be used for genetic diversity detection and marker-assisted breeding of useful genes in autopolyploid species such as alfalfa.
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Affiliation(s)
- Z Gui
- Key Laboratory of Crop Genetics and Breeding, Department of Agronomy, Tianjin Agricultural University, Tianjin, China
| | - H Q Liu
- Key Laboratory of Crop Genetics and Breeding, Department of Agronomy, Tianjin Agricultural University, Tianjin, China
| | - Y Wang
- Institute of Animal Science, Chinese Academy of Agricultural Science, Beijing, China
| | - Q H Yuan
- Institute of Animal Science, Chinese Academy of Agricultural Science, Beijing, China
| | - N Xin
- Key Laboratory of Crop Genetics and Breeding, Department of Agronomy, Tianjin Agricultural University, Tianjin, China
| | - X Zhang
- Key Laboratory of Crop Genetics and Breeding, Department of Agronomy, Tianjin Agricultural University, Tianjin, China
| | - X L Li
- Institute of Animal Science, Chinese Academy of Agricultural Science, Beijing, China
| | - Y S Pi
- Key Laboratory of Crop Genetics and Breeding, Department of Agronomy, Tianjin Agricultural University, Tianjin, China
| | - J M Gao
- Key Laboratory of Crop Genetics and Breeding, Department of Agronomy, Tianjin Agricultural University, Tianjin, China
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Wang B, Zhou K, Jiang S, Hu Y, Gui Z. The application of transition metal molybdates (AMoO4, A = Co, Ni, Cu) as additives in acrylonitrile-butadiene-styrene with improved flame retardant and smoke suppression properties. POLYM ADVAN TECHNOL 2014. [DOI: 10.1002/pat.3380] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Biao Wang
- State Key Laboratory of Fire Science; University of Science and Technology of China; 96 Jinzhai Road Hefei Anhui 230026 People's Republic of China
| | - Keqing Zhou
- State Key Laboratory of Fire Science; University of Science and Technology of China; 96 Jinzhai Road Hefei Anhui 230026 People's Republic of China
| | - Saihua Jiang
- School of Mechanical and Automotive Engineering; South China University of Technology; Guangzhou 510641 People's Republic of China
| | - Yuan Hu
- State Key Laboratory of Fire Science; University of Science and Technology of China; 96 Jinzhai Road Hefei Anhui 230026 People's Republic of China
- Suzhou Key Laboratory of Urban Public Safety, Suzhou Institute for Advanced Study; University of Science and Technology of China; 166 Ren'ai Road Suzhou Jiangsu 215123 People's Republic of China
| | - Z. Gui
- State Key Laboratory of Fire Science; University of Science and Technology of China; 96 Jinzhai Road Hefei Anhui 230026 People's Republic of China
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11
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Janolin PE, Anokhin AS, Gui Z, Mukhortov VM, Golovko YI, Guiblin N, Ravy S, El Marssi M, Yuzyuk YI, Bellaiche L, Dkhil B. Strain engineering of perovskite thin films using a single substrate. J Phys Condens Matter 2014; 26:292201. [PMID: 24961271 DOI: 10.1088/0953-8984/26/29/292201] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Combining temperature-dependent x-ray diffraction, Raman spectroscopy and first-principles-based effective Hamiltonian calculations, we show that varying the thickness of (Ba0.8Sr0.2)TiO3 (BST) thin films deposited on the same single substrate (namely, MgO) enables us to change not only the magnitude but also the sign of the misfit strain. Such previously overlooked control of the strain allows several properties of these films (e.g. Curie temperature, symmetry of ferroelectric phases, dielectric response) to be tuned and even optimized. Surprisingly, such desired control of the strain (and of the resulting properties) originates from an effect that is commonly believed to be detrimental to functionalities of films, namely the existence of misfit dislocations. The present study therefore provides a novel route to strain engineering, as well as leading us to revisit common beliefs.
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Affiliation(s)
- P-E Janolin
- Laboratoire Structures, Propriétés et Modélisation des Solides, UMR CNRS-École Centrale Paris, Grande Voie des Vignes, 92295 Châtenay-Malabry Cedex, France
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12
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Wang S, Luo L, Liang X, Gui Z, Chen C. Estimation and Removal of Physiological Noise from Undersampled Multi-slice fMRI data in Image Space. Conf Proc IEEE Eng Med Biol Soc 2012; 2005:1371-3. [PMID: 17282452 DOI: 10.1109/iembs.2005.1616683] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
The signal variations induced by respiration and cardiac motion decrease the statistical significance in functional MRI data analysis. Significant components of these fluctuations are aliased into the activation spectrum in standard multi-slice imaging protocols. A method of estimation and removal physiological noise in image space is reported. Based on reordering the data from slice ordering to time ordering, the aliased physiological information is available in multi-slice magnitude images. Then physiological noise can be estimated and removed adaptively using signal projecting technique with the actual functional signal preserved.
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Affiliation(s)
- S Wang
- Dept. of Biol. & Medical Eng., Southeast Univ., Nanjing
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