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Semyachkina-Glushkovskaya O, Sergeev K, Semenova N, Slepnev A, Karavaev A, Hramkov A, Prokhorov M, Borovkova E, Blokhina I, Fedosov I, Shirokov A, Dubrovsky A, Terskov A, Manzhaeva M, Krupnova V, Dmitrenko A, Zlatogorskaya D, Adushkina V, Evsukova A, Tuzhilkin M, Elizarova I, Ilyukov E, Myagkov D, Tuktarov D, Kurths J. Machine Learning Technology for EEG-Forecast of the Blood-Brain Barrier Leakage and the Activation of the Brain's Drainage System during Isoflurane Anesthesia. Biomolecules 2023; 13:1605. [PMID: 38002287 PMCID: PMC10669477 DOI: 10.3390/biom13111605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Revised: 10/11/2023] [Accepted: 10/18/2023] [Indexed: 11/26/2023] Open
Abstract
Anesthesia enables the painless performance of complex surgical procedures. However, the effects of anesthesia on the brain may not be limited only by its duration. Also, anesthetic agents may cause long-lasting changes in the brain. There is growing evidence that anesthesia can disrupt the integrity of the blood-brain barrier (BBB), leading to neuroinflammation and neurotoxicity. However, there are no widely used methods for real-time BBB monitoring during surgery. The development of technologies for an express diagnosis of the opening of the BBB (OBBB) is a challenge for reducing post-surgical/anesthesia consequences. In this study on male rats, we demonstrate a successful application of machine learning technology, such as artificial neural networks (ANNs), to recognize the OBBB induced by isoflurane, which is widely used in surgery. The ANNs were trained on our previously presented data obtained on the sound-induced OBBB with an 85% testing accuracy. Using an optical and nonlinear analysis of the OBBB, we found that 1% isoflurane does not induce any changes in the BBB, while 4% isoflurane caused significant BBB leakage in all tested rats. Both 1% and 4% isoflurane stimulate the brain's drainage system (BDS) in a dose-related manner. We show that ANNs can recognize the OBBB induced by 4% isoflurane in 57% of rats and BDS activation induced by 1% isoflurane in 81% of rats. These results open new perspectives for the development of clinically significant bedside technologies for EEG-monitoring of OBBB and BDS.
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Affiliation(s)
- Oxana Semyachkina-Glushkovskaya
- Department of Biology, Saratov State University, Astrakhanskaya Str. 83, 410012 Saratov, Russia; (I.B.); (A.S.); (A.T.); (M.M.); (V.K.); (A.D.); (D.Z.); (V.A.); (A.E.); (M.T.); (I.E.); (J.K.)
- Physics Department, Humboldt University, Newtonstrasse 15, 12489 Berlin, Germany
| | - Konstantin Sergeev
- Institute of Physics, Saratov State University, Astrakhanskaya Str. 83, 410012 Saratov, Russia; (K.S.); (N.S.); (A.S.); (A.K.); (M.P.); (E.B.); (I.F.); (A.D.); (E.I.); (D.T.)
| | - Nadezhda Semenova
- Institute of Physics, Saratov State University, Astrakhanskaya Str. 83, 410012 Saratov, Russia; (K.S.); (N.S.); (A.S.); (A.K.); (M.P.); (E.B.); (I.F.); (A.D.); (E.I.); (D.T.)
| | - Andrey Slepnev
- Institute of Physics, Saratov State University, Astrakhanskaya Str. 83, 410012 Saratov, Russia; (K.S.); (N.S.); (A.S.); (A.K.); (M.P.); (E.B.); (I.F.); (A.D.); (E.I.); (D.T.)
| | - Anatoly Karavaev
- Institute of Physics, Saratov State University, Astrakhanskaya Str. 83, 410012 Saratov, Russia; (K.S.); (N.S.); (A.S.); (A.K.); (M.P.); (E.B.); (I.F.); (A.D.); (E.I.); (D.T.)
- Institute of Radio Engineering and Electronics of RAS, Zelenaya Str. 38, 410019 Saratov, Russia
- Research Institute of Cardiology, Saratov State Medical University, B. Kazachaya Str. 112, 410012 Saratov, Russia
| | - Alexey Hramkov
- Institute of Physics, Saratov State University, Astrakhanskaya Str. 83, 410012 Saratov, Russia; (K.S.); (N.S.); (A.S.); (A.K.); (M.P.); (E.B.); (I.F.); (A.D.); (E.I.); (D.T.)
- Institute of Radio Engineering and Electronics of RAS, Zelenaya Str. 38, 410019 Saratov, Russia
| | - Mikhail Prokhorov
- Institute of Physics, Saratov State University, Astrakhanskaya Str. 83, 410012 Saratov, Russia; (K.S.); (N.S.); (A.S.); (A.K.); (M.P.); (E.B.); (I.F.); (A.D.); (E.I.); (D.T.)
- Institute of Radio Engineering and Electronics of RAS, Zelenaya Str. 38, 410019 Saratov, Russia
| | - Ekaterina Borovkova
- Institute of Physics, Saratov State University, Astrakhanskaya Str. 83, 410012 Saratov, Russia; (K.S.); (N.S.); (A.S.); (A.K.); (M.P.); (E.B.); (I.F.); (A.D.); (E.I.); (D.T.)
- Institute of Radio Engineering and Electronics of RAS, Zelenaya Str. 38, 410019 Saratov, Russia
- Research Institute of Cardiology, Saratov State Medical University, B. Kazachaya Str. 112, 410012 Saratov, Russia
| | - Inna Blokhina
- Department of Biology, Saratov State University, Astrakhanskaya Str. 83, 410012 Saratov, Russia; (I.B.); (A.S.); (A.T.); (M.M.); (V.K.); (A.D.); (D.Z.); (V.A.); (A.E.); (M.T.); (I.E.); (J.K.)
| | - Ivan Fedosov
- Institute of Physics, Saratov State University, Astrakhanskaya Str. 83, 410012 Saratov, Russia; (K.S.); (N.S.); (A.S.); (A.K.); (M.P.); (E.B.); (I.F.); (A.D.); (E.I.); (D.T.)
| | - Alexander Shirokov
- Department of Biology, Saratov State University, Astrakhanskaya Str. 83, 410012 Saratov, Russia; (I.B.); (A.S.); (A.T.); (M.M.); (V.K.); (A.D.); (D.Z.); (V.A.); (A.E.); (M.T.); (I.E.); (J.K.)
- Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences, Prospekt Entuziastov 13, 410049 Saratov, Russia
| | - Alexander Dubrovsky
- Institute of Physics, Saratov State University, Astrakhanskaya Str. 83, 410012 Saratov, Russia; (K.S.); (N.S.); (A.S.); (A.K.); (M.P.); (E.B.); (I.F.); (A.D.); (E.I.); (D.T.)
| | - Andrey Terskov
- Department of Biology, Saratov State University, Astrakhanskaya Str. 83, 410012 Saratov, Russia; (I.B.); (A.S.); (A.T.); (M.M.); (V.K.); (A.D.); (D.Z.); (V.A.); (A.E.); (M.T.); (I.E.); (J.K.)
| | - Maria Manzhaeva
- Department of Biology, Saratov State University, Astrakhanskaya Str. 83, 410012 Saratov, Russia; (I.B.); (A.S.); (A.T.); (M.M.); (V.K.); (A.D.); (D.Z.); (V.A.); (A.E.); (M.T.); (I.E.); (J.K.)
| | - Valeria Krupnova
- Department of Biology, Saratov State University, Astrakhanskaya Str. 83, 410012 Saratov, Russia; (I.B.); (A.S.); (A.T.); (M.M.); (V.K.); (A.D.); (D.Z.); (V.A.); (A.E.); (M.T.); (I.E.); (J.K.)
| | - Alexander Dmitrenko
- Department of Biology, Saratov State University, Astrakhanskaya Str. 83, 410012 Saratov, Russia; (I.B.); (A.S.); (A.T.); (M.M.); (V.K.); (A.D.); (D.Z.); (V.A.); (A.E.); (M.T.); (I.E.); (J.K.)
| | - Daria Zlatogorskaya
- Department of Biology, Saratov State University, Astrakhanskaya Str. 83, 410012 Saratov, Russia; (I.B.); (A.S.); (A.T.); (M.M.); (V.K.); (A.D.); (D.Z.); (V.A.); (A.E.); (M.T.); (I.E.); (J.K.)
| | - Viktoria Adushkina
- Department of Biology, Saratov State University, Astrakhanskaya Str. 83, 410012 Saratov, Russia; (I.B.); (A.S.); (A.T.); (M.M.); (V.K.); (A.D.); (D.Z.); (V.A.); (A.E.); (M.T.); (I.E.); (J.K.)
| | - Arina Evsukova
- Department of Biology, Saratov State University, Astrakhanskaya Str. 83, 410012 Saratov, Russia; (I.B.); (A.S.); (A.T.); (M.M.); (V.K.); (A.D.); (D.Z.); (V.A.); (A.E.); (M.T.); (I.E.); (J.K.)
| | - Matvey Tuzhilkin
- Department of Biology, Saratov State University, Astrakhanskaya Str. 83, 410012 Saratov, Russia; (I.B.); (A.S.); (A.T.); (M.M.); (V.K.); (A.D.); (D.Z.); (V.A.); (A.E.); (M.T.); (I.E.); (J.K.)
| | - Inna Elizarova
- Department of Biology, Saratov State University, Astrakhanskaya Str. 83, 410012 Saratov, Russia; (I.B.); (A.S.); (A.T.); (M.M.); (V.K.); (A.D.); (D.Z.); (V.A.); (A.E.); (M.T.); (I.E.); (J.K.)
| | - Egor Ilyukov
- Institute of Physics, Saratov State University, Astrakhanskaya Str. 83, 410012 Saratov, Russia; (K.S.); (N.S.); (A.S.); (A.K.); (M.P.); (E.B.); (I.F.); (A.D.); (E.I.); (D.T.)
| | - Dmitry Myagkov
- Institute of Physics, Saratov State University, Astrakhanskaya Str. 83, 410012 Saratov, Russia; (K.S.); (N.S.); (A.S.); (A.K.); (M.P.); (E.B.); (I.F.); (A.D.); (E.I.); (D.T.)
| | - Dmitry Tuktarov
- Institute of Physics, Saratov State University, Astrakhanskaya Str. 83, 410012 Saratov, Russia; (K.S.); (N.S.); (A.S.); (A.K.); (M.P.); (E.B.); (I.F.); (A.D.); (E.I.); (D.T.)
| | - Jürgen Kurths
- Department of Biology, Saratov State University, Astrakhanskaya Str. 83, 410012 Saratov, Russia; (I.B.); (A.S.); (A.T.); (M.M.); (V.K.); (A.D.); (D.Z.); (V.A.); (A.E.); (M.T.); (I.E.); (J.K.)
- Physics Department, Humboldt University, Newtonstrasse 15, 12489 Berlin, Germany
- Centre for Analysis of Complex Systems, Sechenov First Moscow State Medical University, Bolshaya Pirogovskaya 2, Building 4, 119435 Moscow, Russia
- Potsdam Institute for Climate Impact Research, Telegrafenberg A31, 14473 Potsdam, Germany
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Zhuravlev A, Cruz A, Aksenov V, Golovanov A, Lluch JM, Kuhn H, González-Lafont À, Ivanov I. Different Structures-Similar Effect: Do Substituted 5-(4-Methoxyphenyl)-1 H-indoles and 5-(4-Methoxyphenyl)-1 H-imidazoles Represent a Common Pharmacophore for Substrate Selective Inhibition of Linoleate Oxygenase Activity of ALOX15? Molecules 2023; 28:5418. [PMID: 37513289 PMCID: PMC10383952 DOI: 10.3390/molecules28145418] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2023] [Revised: 07/04/2023] [Accepted: 07/11/2023] [Indexed: 07/30/2023] Open
Abstract
Mammalian 15-lipoxygenases (ALOX15) are lipid peroxidizing enzymes that exhibit variable functionality in different cancer and inflammation models. The pathophysiological role of linoleic acid- and arachidonic acid-derived ALOX15 metabolites rendered this enzyme a target for pharmacological research. Several indole and imidazole derivatives inhibit the catalytic activity of rabbit ALOX15 in a substrate-specific manner, but the molecular basis for this allosteric inhibition remains unclear. Here, we attempt to define a common pharmacophore, which is critical for this allosteric inhibition. We found that substituted imidazoles induce weaker inhibitory effects when compared with the indole derivatives. In silico docking studies and molecular dynamics simulations using a dimeric allosteric enzyme model, in which the inhibitor occupies the substrate-binding pocket of one monomer, whereas the substrate fatty acid is bound at the catalytic center of another monomer within the ALOX15 dimer, indicated that chemical modification of the core pharmacophore alters the enzyme-inhibitor interactions, inducing a reduced inhibitory potency. In our dimeric ALOX15 model, the structural differences induced by inhibitor binding are translated to the hydrophobic dimerization cluster and affect the structures of enzyme-substrate complexes. These data are of particular importance since substrate-specific inhibition may contribute to elucidation of the putative roles of ALOX15 metabolites derived from different polyunsaturated fatty acids in mammalian pathophysiology.
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Affiliation(s)
- Alexander Zhuravlev
- Lomonosov Institute of Fine Chemical Technologies, MIREA-Russian Technological University, Vernadskogo pr. 86, 119571 Moscow, Russia
| | - Alejandro Cruz
- Departament de Química, Universitat Autònoma de Barcelona, Bellaterra, 08193 Barcelona, Spain
| | - Vladislav Aksenov
- Lomonosov Institute of Fine Chemical Technologies, MIREA-Russian Technological University, Vernadskogo pr. 86, 119571 Moscow, Russia
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklihio-Maklaja Str., 16/10c4, 117997 Moscow, Russia
| | - Alexey Golovanov
- Lomonosov Institute of Fine Chemical Technologies, MIREA-Russian Technological University, Vernadskogo pr. 86, 119571 Moscow, Russia
| | - José M Lluch
- Departament de Química, Universitat Autònoma de Barcelona, Bellaterra, 08193 Barcelona, Spain
- Institut de Biotecnologia i de Biomedicina (IBB), Universitat Autònoma de Barcelona, Bellaterra, 08193 Barcelona, Spain
| | - Hartmut Kuhn
- Department of Biochemistry, Charite-University Medicine Berlin, Corporate Member of Free University Berlin and Humboldt University Berlin, Charitéplatz 1, D-10117 Berlin, Germany
| | - Àngels González-Lafont
- Departament de Química, Universitat Autònoma de Barcelona, Bellaterra, 08193 Barcelona, Spain
- Institut de Biotecnologia i de Biomedicina (IBB), Universitat Autònoma de Barcelona, Bellaterra, 08193 Barcelona, Spain
| | - Igor Ivanov
- Lomonosov Institute of Fine Chemical Technologies, MIREA-Russian Technological University, Vernadskogo pr. 86, 119571 Moscow, Russia
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Romanova DY, Varoqueaux F, Daraspe J, Nikitin MA, Eitel M, Fasshauer D, Moroz LL. Hidden cell diversity in Placozoa: ultrastructural insights from Hoilungia hongkongensis. Cell Tissue Res 2021; 385:623-637. [PMID: 33876313 PMCID: PMC8523601 DOI: 10.1007/s00441-021-03459-y] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2020] [Accepted: 03/31/2021] [Indexed: 12/17/2022]
Abstract
From a morphological point of view, placozoans are among the most simple free-living animals. This enigmatic phylum is critical for our understanding of the evolution of animals and their cell types. Their millimeter-sized, disc-like bodies consist of only three cell layers that are shaped by roughly seven major cell types. Placozoans lack muscle cells and neurons but are able to move using their ciliated lower surface and take up food in a highly coordinated manner. Intriguingly, the genome of Trichoplax adhaerens, the founding member of the enigmatic phylum, has disclosed a surprising level of genetic complexity. Moreover, recent molecular and functional investigations have uncovered a much larger, so-far hidden cell-type diversity. Here, we have extended the microanatomical characterization of a recently described placozoan species-Hoilungia hongkongensis. In H. hongkongensis, we recognized the established canonical three-layered placozoan body plan but also came across several morphologically distinct and potentially novel cell types, among them novel gland cells and "shiny spheres"-bearing cells at the upper epithelium. Thus, the diversity of cell types in placozoans is indeed higher than anticipated.
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Affiliation(s)
- Daria Y Romanova
- Department of Fundamental Neurosciences, University of Lausanne, 1005, Lausanne, Switzerland.
- Cellular Neurobiology of Learning Lab, Institute of Higher Nervous Activity and Neurophysiology, Moscow, 117485, Russia.
| | - Frédérique Varoqueaux
- Department of Fundamental Neurosciences, University of Lausanne, 1005, Lausanne, Switzerland
- Department of Computational Biology, University of Lausanne, 1015, Lausanne, Switzerland
| | - Jean Daraspe
- Electron Microscopy Facility, University of Lausanne, Lausanne, Switzerland
| | - Mikhail A Nikitin
- Belozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, 119991, Russia
- Kharkevich Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow, 127994, Russia
| | - Michael Eitel
- Department of Earth and Environmental Sciences, Paleontology and Geobiology, Ludwig-Maximilians Universität München, Munich, Germany
| | - Dirk Fasshauer
- Department of Fundamental Neurosciences, University of Lausanne, 1005, Lausanne, Switzerland.
- Department of Computational Biology, University of Lausanne, 1015, Lausanne, Switzerland.
| | - Leonid L Moroz
- Whitney Laboratory for Marine Bioscience, University of Florida, St. Augustine, FL, 32080, USA.
- Departments of Neuroscience and McKnight Brain Institute, University of Florida, Gainesville, FL, 32610, USA.
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