Habitat-use of the vulnerable Atlantic Nurse Shark: a review

Human activities have led to the loss of critical habitats for aquatic species at such an accelerated rate that habitat modification is considered a leading threat to biodiversity. Sharks and rays are considered the second most threatened group of vertebrates that have also suffered from habitat loss, especially in nursery grounds and reef-associated species. In this sense, actions toward the conservation of critical grounds for species survival are urgently needed, especially for those threatened with extinction. This study aimed to gather and provide information on the worldwide distribution and habitat association of the 'vulnerable' Atlantic Nurse Shark Ginglymostoma cirratum through a literature review performed at the Dimensions research database. A total of 30 studies published between 1950 and 2021 were retained since they defined at least the type of habitat in which G. cirratum was associated. Most studies covered the Floridian ecoregion, where G. cirratum is more common and abundant. Reefs, seagrass, sandy, rocky, mangrove, and macroalgae accounted for the majority of habitat associations, with a higher diversity of habitats detected within marine protected areas (MPAs). Ginglymostoma cirratum was recorded at a maximum depth of 75 m, temperatures ranging from 25 °C to 34 °C, and salinities between 31 and 38 ppt. Neonates were associated with shallower habitats (<20 m), mostly reefs, rocks, macroalgae, sandy shores, and seagrass, in an average temperature of 26 °C and salinity of 36 ppt. Breeding events and habitats were reported by 11 studies, 72.7% of them in shallow waters, mostly inside MPAs (90.9%). Our findings highlighted the key role played by MPAs in protecting essential grounds for threatened species, such as the Atlantic Nurse Shark. Major ecoregions (e.g., the Eastern Atlantic) are still underrepresented in the scientific literature as long as studies aim specifically to assess G. cirratum habitat association. Thus, further insights into the essential habitats needed to conserve the Atlantic Nurse Shark can still emerge from future studies. Considering the recent IUCN extinction risk status change in G. cirratum (i.e., Data Deficient to 'Vulnerable'), new conservation measures that integrate habitat protection and management are urgently needed and should consider the data collected herein.

Spatial distribution of parrotfishes and groupers in an Okinawan coral reef: size-related associations in relation to habitat characteristics

Parrotfishes (Labridae: Scarini) and groupers (Epinephelidae) are important fish groups that are regarded as the fisheries targets of primary importance in coral reefs. In order to establish ecosystem-based management of these two fish groups, clarifying the spatial distribution relative to habitat characteristics is of central importance. The present study investigated the spatial distributions of 12 parrotfishes species and seven groupers species in relation to environmental characteristics in an Okinawan coral reef. Ten out of the 12 parrotfish species and all seven grouper species showed species-specific spatial distributions. Four substrate types in the inner reefs (branching Acropora, bottlebrush Acropora, dead branching Acropora, and dead bottlebrush Acropora), three substrate types in the exposed reefs (massive coral, other coral, and calcium carbonate substratum), and water depth showed significant associations with the spatial distribution of fishes. Among the 12 parrotfish species, two species (Scarus spinus and S. forsteni) and four species (S. psittacus, S. hypselopterus, S. dimidiatus and S. ghobban) were primarily found in exposed reefs and inner reefs, respectively. Among the seven grouper species, two species (Cephalopholis argus and C. urodeta) and two other species (C. miniata and Epinephelus ongus) were primarily found in exposed reefs and inner reefs, respectively. Size-related spatial distribution was also found for three parrotfish species (Chlorurus microrhinos, Scarus rivulatus and S. hypselopterus), indicating that smaller-sized and larger-sized individuals were respectively found at sites with greater coverage of substrates with fine structure (live bottlebrush Acropora and dead bottlebrush Acropora) and coarse structure (live branching Acropora, dead branching Acropora and calcium carbonate substratum). The present study suggested that the spatial distribution of parrotfishes and groupers is not necessarily associated with the higher coverage of living corals, but positively associated with high substrate complexity. Thus, actual spatial distributional patterns of species should be considered to select candidate sites for protection and conservation for the two fish groups.

Coral reef degradation affects the potential for reef recovery after disturbance

The loss of coral cover is often accompanied by an increase of benthic algae, a decline in biodiversity and habitat complexity. However, it remains unclear how surrounding communities influence the trajectories of re-colonization between pulse disturbance events. Over a 12-month field experiment in the central Red Sea, we examined how healthy (hard-coral dominated) and degraded (algae-dominated) reef areas influence recruitment and succession patterns of benthic reef foundation communities on bare substrates. Crustose coralline algae and other calcifiers were important colonizers in the healthy reef area, promoting the accumulation of inorganic carbon. Contrary, substrates in the degraded area were predominantly colonized by turf algae, lowering the accumulation of inorganic carbon by 178%. While coral larvae settlement similarly occurred in both habitats, degraded areas showed 50% fewer recruits. Our findings suggest that in degraded reefs the replenishment of adult coral populations is reduced due to recruitment inhibition through limited habitat complexity and grazing pressure, thereby restraining reef recovery.

Habitat association of larval fish assemblages in the northern Persian Gulf

We examined the habitat use of fish larvae in the northern Persian Gulf from July 2006 to June 2007. Correspondence Analysis showed significant differences between hydrological seasons in habitat use and structure of larval fish assemblages, while no differences were found regarding abundance among coralline and non-coralline habitats. The observed configuration resulted in part from seasonal reproductive patterns of dominant fish influencing the ratio pelagic:demersal spawned larvae. The ratio increased along with temperature and chlorophyll-a concentration, which likely fostered the reproduction of pelagic spawner fish. The close covariation with temperature throughout hydrographic seasons suggests a leading role of temperature in the seasonal structure of larvae assemblages. Our results provide new insights on fish larval ecology in a traditionally sub-sampled and highly exposed zone to anthropogenic pollution, the northern Persian Gulf, and highlight the potential role of Khark and Kharko Islands in conservation and fishery management in the area.

Decreasing seagrass density negatively influences associated fauna

Seagrass meadows globally are disappearing at a rapid rate with physical disturbances being one of the major drivers of this habitat loss. Disturbance of seagrass can lead to fragmentation, a reduction in shoot density, canopy height and coverage, and potentially permanent loss of habitat. Despite being such a widespread issue, knowledge of how such small scale change affects the spatial distribution and abundances of motile fauna remains limited. The present study investigated fish and macro faunal community response patterns to a range of habitat variables (shoot length, cover and density), including individual species habitat preferences within a disturbed and patchy intertidal seagrass meadow. Multivariate analysis showed a measurable effect of variable seagrass cover on the abundance and distribution of the fauna, with species specific preferences to both high and low seagrass cover seagrass. The faunal community composition varied significantly with increasing/decreasing cover. The faunal species composition of low cover seagrass was more similar to sandy control plots than to higher cover seagrass. Shannon Wiener Diversity (H′) and species richness was significantly higher in high cover seagrass than in low cover seagrass, indicating increasing habitat value as density increases. The results of this study underline how the impacts of small scale disturbances from factors such as anchor damage, boat moorings and intertidal vehicle use on seagrass meadows that reduce shoot density and cover can impact upon associated fauna. These impacts have negative consequences for the delivery of ecosystem services such as the provision of nursery habitat.

Heterogeneity in soil water and light environments and dispersal limitation: what facilitates tree species coexistence in a temperate forest?

In the present study, we analysed the habitat association of tree species in an old-growth temperate forest across all life stages to test theories on the coexistence of tree species in forest communities. An inventory for trees was implemented at a 6-ha plot in Ogawa Forest Reserve for adults, juveniles, saplings and seedlings. Volumetric soil water content (SMC) and light levels were measured in 10-m grids. Relationships between the actual number of stems and environmental variables were determined for 35 major tree species, and the spatial correlations within and among species were analysed. The light level had no statistically significant effect on distribution of saplings and seedlings of any species. In contrast, most species had specific optimal values along the SMC gradient. The optimal values were almost identical in earlier life stages, but were more variable in later life stages among species. However, no effective niche partitioning among the species was apparent even at the adult stage. Furthermore, results of spatial analyses suggest that dispersal limitation was not sufficient to mitigate competition between species. This might result from well-scattered seed distribution via wind and bird dispersal, as well as conspecific density-dependent mortality of seeds and seedlings. Thus, both niche partitioning and dispersal limitation appeared less important for facilitating coexistence of species within this forest than expected in tropical forests. The tree species assembly in this temperate forest might be controlled through a neutral process at the spatial scale tested in this study.

Species composition of forensically important blow flies (Diptera: Calliphoridae) and flesh flies (Diptera: Sarcophagidae) through space and time

Weekly monitoring of forensically important flight-active blow flies (Diptera: Calliphoridae) and flesh flies (Diptera: Sarcophagidae) was performed using small baited traps. Sampling took place in two rural, one suburban and two urban habitats in and around Frankfurt (Main), Germany, lasting two years and eight months. Highest values for species richness and Chao-Shen entropy estimator for Shannon's index in both families were found at the urban sites, peaking during summer. Space-time interaction was tested and found to be significant, demonstrating the value of a statistical approach recently developed for community surveys in ecology. K-means partitioning and analysis of indicator species gave significant temporal and habitat associations of particular taxa. Calliphora vicina was an indicator species for lower temperatures without being associated with a particular habitat. Lucilia sericata was an indicator for urban sites, whereas Lucilia ampullacea and Lucilia caesar were indicators for rural sites, supplemented by the less frequent species Calliphora vomitoria. Sarcophagidae were observed during a clearly shorter period of year. Sarcophaga subvicina+Sarcophaga variegata was found to be an indicator for urban habitats during summer as well as Sarcophaga albiceps for rural habitats. A significant association of Sarcophaga caerulescens to rural habitats as well as one of Sarcophaga similis to urban habitats was observed.

Structure of a mosaic hybrid zone between the field crickets Gryllus firmus and G. pennsylvanicus

Hybrid zones provide insight into the nature of species boundaries and the evolution of barriers to gene exchange. Characterizing multiple regions within hybrid zones is essential for understanding both their history and current dynamics. Here, we describe a previously uncharacterized region of a well-studied hybrid zone between two species of field crickets, Gryllus pennsylvanicus and G. firmus. We use a combination of mitochondrial DNA sequencing, morphological data, and modeling of environmental variables to identify the ecological factors structuring the hybrid zone and define patterns of hybridization and introgression. We find an association between species distribution and natural habitat; Gryllus pennsylvanicus occupies natural habitat along forest edges and natural clearings, whereas G. firmus occupies more disturbed areas in agricultural and suburban environments. Hybridization and introgression occur across patch boundaries; there is evidence of substantial admixture both in morphological characters and mtDNA, over a broad geographic area. Nonetheless, the distribution of morphological types is bimodal. Given that F1 hybrids are viable and fertile in the lab, this suggests that strong pre-zygotic barriers are operating in this portion of the hybrid zone.