Floristic changes and environmental drivers of soil fungi and archaea in different salt-tolerant plant communities in the intertidal habitat of coastal wetlands

Microorganisms are crucial elements of terrestrial ecosystems, which play significant roles in improving soil physicochemical properties, providing plant growth nutrients, degrading toxic and harmful chemicals, and biogeochemical cycling. Variations in the types and quantities of root exudates among different plants greatly alter soil physicochemical properties and result in variations in the diversity, structure, and function of soil microorganisms. Not much is understood about the differences of soil fungi and archaea communities for different plant communities in coastal wetlands, and their response mechanisms to environmental changes. In this study, fungal and archaea communities in soils of Suaeda salsa, Phragmites australis, and Spartina alterniflora in the intertidal habitat of coastal wetlands were selected for research. Soil fungi and archaea were analyzed for diversity, community structure, and function using high throughput ITS and 16S rRNA gene sequencing. The study revealed significant differences in fungi and archaea's diversity and community structure in the rhizosphere soil of three plant communities. At the same time, there is no significant difference in the functional groups. SOM, TP, AP, MC, EC and SOM, TN, TP, AP, MC, EC are the primary environmental determinants affecting changes in soil fungal and archaeal communities, respectively. Variations in the diversity, community structure, and ecological functions of fungi and archaea can be used as indicators characterizing the impact of external disturbances on the soil environment, providing a theoretical foundation for the effective utilization of soil microbial resources, thereby achieving the goal of environmental protection and health promotion.

Ecological determinants in plant community structure across dry afromontane forest patches of Northwestern Ethiopia

Ethiopia is a mountainous country with great geographic diversity. The diversified topographic features in Ethiopia made the country have a rich biodiversity forest cover in tropical Africa. This made Ethiopia have the largest floral diversity in tropical Africa. This floral diversity is rich in endemic elements. About 6,027 vascular plant species (including subspecies) with about 10.7% endemism have been documented. Plant community types are primarily influenced by topographic factors, as well as disturbance and environmental factors. The objective of this study is to demonstrate that 1: The forest patches in the study area exhibit distinct plant community types. 2: The composition and structure of these plant communities are influenced by various environmental variables. To achieve this, a total of 76 plots were used to collect vegetation and environmental data. The collected data were then analyzed using the R software, employing agglomerative hierarchical cluster analysis and redundancy analysis (RDA) to identify plant communities and assess the relationship between these communities and environmental variables.R software was used to identify plant communities and analyze the relationship between plant community types and environmental variables using agglomerative hierarchical cluster analysis and redundancy analysis (RDA). Four plant community types were identified. The RDA results highlighted the significant impact (p < 0.005) of altitude, aspect, slope, grazing, and human interference on species distribution and the formation of plant communities. The RDA results highlighted the significant impact (p < 0.005) of altitude, aspect, slope, grazing, and human interference on species distribution and the formation of plant communities.The findings indicate that the variation in plant communities is closely associated with topographic factors such as altitude, slope, aspect, as well as disturbance factors like grazing, and human interference, with altitude being the most influential factor. Based on these findings, it is recommended that conservation plans take into consideration the effects of grazing and human interference in order to address the challenges faced in conserving forest patches in the future.Additionally, further research efforts should focus on mitigating disturbance factors and understanding the environmental variables that affect forest patches to enhance their conservation.

Arbuscular mycorrhizal fungi influence the intraspecific competitive ability of plants under field and glasshouse conditions

MAIN CONCLUSION

Nicotiana attenuata's capacity to interact with arbuscular mycorrhizal fungi influences its intraspecific competitive ability under field and glasshouse conditions, but not its overall community productivity. Arbuscular mycorrhizal (AM) fungi can alter the nutrient status and growth of plants, and they can also affect plant-plant, plant-herbivore, and plant-pathogen interactions. These AM effects are rarely studied in populations under natural conditions due to the limitation of non-mycorrhizal controls. Here we used a genetic approach, establishing field and glasshouse communities of AM-harboring Nicotiana attenuata empty vector (EV) plants and isogenic plants silenced in calcium- and calmodulin-dependent protein kinase expression (irCCaMK), and unable to establish AM symbioses. Performance and growth were quantified in communities of the same (monocultures) or different genotypes (mixed cultures) and both field and glasshouse experiments returned similar responses. In mixed cultures, AM-harboring EV plants attained greater stalk lengths, shoot and root biomasses, clearly out-competing the AM fungal-deficient irCCaMK plants, while in monocultures, both genotypes grew similarly. Competitive ability was also reflected in reproductive traits: EV plants in mixed cultures outperformed irCCaMK plants. When grown in monocultures, the two genotypes did not differ in reproductive performance, though total leaf N and P contents were significantly lower independent of the community type. Plant productivity in terms of growth and seed production at the community level did not differ, while leaf nutrient content of phosphorus and nitrogen depended on the community type. We infer that AM symbioses drastically increase N. attenuata's competitive ability in mixed communities resulting in increased fitness for the individuals harboring AM without a net gain for the community.

Woody plants have the advantages in the phytoremediation process of manganese ore with the help of microorganisms

The serious ecological damage caused by mining activities cannot be ignored. The use of an environmentally friendly restoration method to rebuild the vegetation and soil environment in the mining area has attracted more and more attention. This paper aims to study soil quality as well as vegetation characteristics of four woody species including Pinus massoniana (P. massoniana), Broussonetia papyrifera (B. papyrifera), Koelreuteria paniculata (K. paniculata), Osmanthus fragrans (O. fragrans), and two herbaceous species including Setaria viridis (S. viridis) and Cynodon dactylon (C. dactylon). In addition, we further clarified the effects of B. papyrifera and K. paniculata on soil nutrients and microbial communities after restoration. The results showed that the vegetation restoration area had better soil quality and plant community diversity, and the woody plants restoration effect were better. Compared with slag, B. papyrifera and K. paniculata remediation could improve soil pH and mitigate heavy metal contamination in mining areas, but was not effective in enhancing Soil Organic Matter (SOM), Total Nitrogen (TN), Total Potassium (TK) and Total Phosphorus (TP). In addition, the abundance and diversity of soil bacterial communities were increased. Of all the study sites, Proteobacteria had the greatest dominance. Vegetation restoration resulted in an increase in the relative abundance of Acidobacteria, while a decrease in Actinobacteria, Cyanobacteria and Firmicutes. With the restoration of vegetation, the increase of pH, the change of TN, SOM, TK, TP and the mitigation of Manganese (Mn) pollution were the main reasons affecting the soil microbial community. This study has great significance for understanding the ecological changes in the mining area after artificially mediated vegetation restoration, including changes in soil environment, plant community and microbial community, and woody plants will be more encouraged for the restoration of manganese mining areas.

Ecological and habitat ranges of orchids in the northernmost regions of their distribution areas: A case study from Ural Mountains, Russia

The Orchidaceae, which is one of the most interesting families of angiosperms, contains a large number of rare species. Despite their acknowledged importance, little attention has been paid to the study of orchids distributed in northern territories. In this study, we determined the syntaxonomical diversity and ecological parameters of orchid habitats in two of Europe's largest protected areas, the Pechoro-Ilychsky Reserve and the Yugyd Va National Park (northeastern European Russia), and then compared our findings to those in other parts of orchid distribution ranges. For this purpose, we studied 345 descriptions of plant communities (releves) containing species from Orchidaceae and defined habitat parameters using Ellenberg indicator values with the community weight mean approach, nonmetric multidimensional scaling (NMS), and relative niche width. We found that orchids were distributed in eight habitat types and 97 plant associations. The largest number of orchid species is found in forest communities. Half of the orchid species under study occur in the mires and rock habitats with open vegetation. Several orchids consistently occur in areas disturbed by human activity. In addition, our study indicates that the main drivers of orchid distribution across the vegetation types are light and soil nitrogen. Our analysis of the ecological parameters of orchid habitats indicates that some orchid species can be classified as habitat specialists that are confined to a relatively narrow ecological niche in the Urals (e.g., Goodyera repens, Cypripedium guttatum and Dactylorhiza maculata). Several other species (e.g. Neottia cordata and Dactylorhiza fuchsia) grow under diverse ecological parameters.

Indictors of wetland health improve following small-scale ecological restoration on private land

Globally wetlands are imperilled and restoring these highly productive and biodiverse ecosystems is key to regaining their lost function and health. Much of the fertile, low-lying land that was historically wetland is now farmed, so privately-owned locations play critical roles in regaining space for wetlands. However, wetland restoration on private property is often small-scale and supported by minimal funding and expertise. Little is known about what these efforts achieve, and what contexts facilitate the greatest gains in wetland health. Using a paired plot design for 18 restored and 18 unrestored wetlands, we aimed to understand changes in wetland health following restoration on private property. We characterised plant and microbial communities and soil characteristics following wetland restoration and explored how environmental settings of restored wetlands related to the clustering of wetland health indicators. We found that all indicators of wetland health significantly increased following restoration except for the ratio of Gram negative to Gram positive bacteria. Restoration enhanced plant alpha and beta diversity, adding ~13 native plant species per plot. Soils in restored wetlands contained 20% more organic matter, and 25% more microbial biomass, which was driven by an increased abundance of fungi. Restoration reduced soil bulk density by 0.19 g^-1 cm³ and Olsen Phosphorus by 23%. These effects on soil physical characteristics and microbial communities were strongest in the wettest locations. Restored wetlands clustered into three main groups based on indicators of wetland health. Hydrological flow explained the clustering of wetlands, with riverine wetlands exhibiting greater indicators of recovery than depressional wetlands, suggesting that hydrological flow may influence post-restoration recovery. Overall, this study shows that small-scale wetland restoration on private land improved wetland health, providing evidence that it can be an effective use of marginal agricultural land.

Restoration of vegetation around mining enterprises

This paper is devoted to the restoration of vegetation around mining areas on the example of two land-reclamation zones in the Borodinsky coal mine during spring-summer of 2011-2021. Analysis of vegetation in this area has shown that indicators of spontaneous plant diversity in plots No. 1 and No. 2 were considered moderate in both layers (H < 2.5). Underwood and seeding diversity indices at pre-mining sites were ranked high, reaching 4.01-4.25 and 3.78-3.82, respectively. The analysis of the biological diversity of the flora in the undergrowth of the 12-year-old plot revealed approximately 29 spontaneous plant species belonging to 25 genera and 18 families. The most significant number of species found was found from the family Euphorbia, Cereals, and Legumes. At the 18-year-old site, the number and diversity of plant species (38 species) belonging to 38 genera and 27 families are slightly larger, with the most significant number of species within Euphorbiaceae and Poaceae, Asteraceae, Rubiaceae and Leguminosae. Saplings of various tree species from the Euphorbia and Leguminous family, such as Euphorbia cyparissias L., E. fischeriana Steud., Desmodium triflorum L., Indigofera gerardiana (Wall.) Baker, Robinia viscosa Vent. grew well in both plots. Many other spontaneous species of trees were also found in small populations at the 18-year-old site, namely, Pinus sylvestris L., Salix alba L., Populus alba L., and P. tremula L. In contrast to the younger site, some seedlings of small trees like S. alba and P. tremula and terrestrial ferns such as common bracken (Pteridium aquilinum (L.) Kuhn) and adiantum capillus-veneris L. prevailed in the older site.

Data on the soil and vegetation properties at the small gully catchment area: Steppe region of Kalmykia Republic (South Russia)

In rural areas, research on the environment in native (untaught) soils is important to understand the rate of pedogenesis and to prevent the problems associated with hidden huger. In this article, original data on vegetation, chemical properties and elemental and mineralogical composition of Kastanozems (Protosalic, Siltic) and Hypersalic Solonetz (Siltic) of the small gully catchment (2 ha in total) located at the NE Ergeni Upland (Western Kalmykia, Russia) were presented. Vegetation was described and cut off (to characterize an aboveground biomass) at 13 key plots of 1 × 1 m. The list of species of the small gully catchment area amounts to 23 species (predominantly, perennial herbs) belonging to 13 families and 11 orders. The main dominants are Artemisia lerchiana, A. austriaca, Festuca valesiaca and Poa bulbosa. Soils were described and sampled in 11 cross-sections and two key plots (0 - 10 cm topsoil sampling). In soil water extracts (79 samples in total), electrical conductivity (EC) and pH were measured. In soil samples, particle size distribution, soil organic carbon and CaCO₃ contents, total concentration of all the macro elements, some trace (Cl, Nb, Rb, Th, Y, Zr) and potentially toxic elements (As, Co, Cr, Cu, Ni, Pb, Sr, V, and Zn) were described. Moreover, the concentration of three mobile fractions of elements (Li, Be, B, Na, Mg, Al, Si, P, S, K, Ca, Ti, V, Cr, Mn, Fe, Co, Ni, Cu, Zn, Sr, Ba, Cd, Pb) measured using Inductively Coupled Plasma Atomic Emission Spectrometry (AES-ICP) was presented. Geochemical indexes of weathering (R - Silica/Alumina, CIW - Chemical Index of Weathering, CIA - Chemical Index of Alteration, WIP - Weathering Index of Parker, PWI -Product of Weathering Index, Vogt Ratio, PIA - Plagioclase Index of Alteration, STI - Silica-Titanium Index, B/A - Bases/Alumina, B/R - Bases/R₂O₃, Si/R - Silica/R₂O₃, Weathering indexes WI-1 and WI-2, Si/Ses - Silica/Sesquioxides, Si/Fe - Silica/Iron, a - Potassium/Sodium, ba-1 - (Potassium-Sodium)/Alumina, ba-2 - (Calcium-Magnesium)/Alumina, Ba - (Potassium-Sodium-Calcium)/Alumina) were calculated. In 12 bulk soil samples from Kastanozems and Solonetz, mineralogy (X-Ray diffractometry, the Rietveld full-pattern fitting method for quantitative analysis) was described. Data obtained can be used for more confident identification of pollution sources and pollutants' migration routes, as well as for more effective land-use management, calculating the required doses of nutrients and for adaptation of land use.

Danish wetlands remained poor with plant species 17-years after restoration

For more than two decades, wetland restoration has been successfully applied in Denmark as a tool to protect watercourses from elevated nutrient inputs from agriculture, but little is known about how the flora and fauna respond to restoration. The main objective of this study was therefore to: (1) examine plant community characteristics in 10 wetland sites in the River Odense Kratholm catchment, restored between 2001 and 2011 by re-meandering the stream and disconnecting the tile drains, and (2) explore whether the effects of restoration on plant community characteristics change with the age of the restoration. Specifically, we hypothesised that plant community composition, species richness and diversity would improve with the age of the restoration and eventually approach the state of natural wetland vegetation. We found that the prevailing plant communities could be characterised as humid grasslands, moist fallow fields and improved grasslands, whereas the abundance of natural wetland plant communities (e.g., rich fens, fen-sedge beds and humid grasslands) was lower in both the recently restored as well as in older restored wetlands. Additionally, species richness and diversity did not seem to improve with the age of the restoration. We suggest that the continued high nutrient input at the restored sites in combination with restricted dispersal of wetland plant species may hamper the recovery of natural plant communities and that the sites therefore may stay botanically poor for many decades.

Plant and soil properties mediate the response of soil microbial communities to moderate grazing in a semiarid grassland of northern China

Even though a growing amount of information about the effects of livestock grazing on soil microbial communities have accumulated in literature, less is known about the combined response of plants, soil properties, and their interactions with soil microbes. In this study, we used a seven-year controlled grazing experiment to quantify the response of plant and soil properties and their interactions with soil microbial communities to moderate grazing in a semiarid grassland of Northern China. Our results showed that moderate grazing reduced the richness and diversity of soil microbial communities, as well as weakened community interactions. However, bacterial communities and their linkages were more stable under moderate grazing than fungal communities. Changes in aboveground plant biomass, soil water content, NO₃^--N, and NO₃/NH₄ ratio dominated grazing effects on soil bacterial communities, while fungal communities were mainly influenced by plant N, soil NO₃^--N, and NO₃/NH₄ ratio. Changes in the plant community composition played a key role in driving the composition of the fungal community. Our results provide a new insight into the response of soil microbes to moderate grazing, and suggest that above- and belowground communities should be considered to be precise indicators of the state and characteristics of the grassland ecosystem.

Quantifying organic carbon storage in temperate pond sediments

Ponds may hold significant stocks of organic carbon in their sediments and pond creation may offer a practical application for land managers to increase carbon storage. However, ponds are overlooked in global carbon budgets. Their potential significance is suggested by the abundance of ponds throughout terrestrial biomes and their high carbon burial rates, but we lack measures of sediment carbon stocks from typical ponds. We sampled sediment from lowland temperate ponds in north east England comparing carbon stocks from ponds categorised by surrounding land use, or dominant vegetation, or drying regime, along with measures of variation within ponds. Sediment carbon varied considerably between ponds. This variation was more important than any systematic variation between pond types grouped by land use, vegetation or drying, or any variation within an individual pond. Our estimates of pond sediment organic carbon give measures that are higher than from soils in widespread habitats such as temperate grassland and woodland, suggesting that ponds are significant for carbon budgets in their own right. Ponds are relatively easy to create, are ubiquitous throughout temperate biomes and can be fitted in amongst other land uses; our results show that pond creation would be a useful and practical application to boost carbon sequestration in temperate landscapes.

Data on vegetation sampling in areas dominated by Pteridium aquilinum in Nyungwe forest, Western Province of Rwanda

The data presented in this article describe plant traits (ecological strategy, plant succession, biological form, plant distribution and conservation status), cover-abundance scores of individualized communities after the application of Multivariate Statistical Package (MVSP) software and coverage percentage of species which compose the communities in areas sampled from Nyungwe forest. Taxonomic diversity indices (Shannon, Evenness and Richness) were also calculated and included in the dataset. The observed data can support the evaluation of Pteridium invasion in comparable forest types.

Impact of Pteridium aquilinum on vegetation in Nyungwe Forest, Rwanda

Pteridium aquilinum acts as an important ecological filters in dominated communities. A study to investigate the effects of its dominance in the vegetation of Nyungwe was conducted. Sampling was done in Mubuga and Uwajerome mountains. A total of 53 alternate plots measuring 10 m × 10 m were sampled along a transect at regular interval of 10 m. In each plot, the species were identified and the cover abundance measured subjectively. Plant strategies, succession, biological forms, distribution and conservation status of each species were also determined. Data on species composition and cover abundance were analyzed using MVSP software and Shannon -Weiner index was used to determine diversity of communities. Descriptive statistics were used to assess the characteristics of the species. A total of 141 species belonging to 100 genera and 54 families and distributed in four plant communities were identified. Pteridium aquilinum, Macaranga kilimandischarica, Lycopodium clavatum and Microglossa parvifolia were dominant in communities I, II and III, with average cover of 31%, 6% and 4% respectively. The primary forest was dominated by Pavetta rwandensis and Allophyllus chaunostachys in community IV, with 21% and 10% coverage respectively. Shannon- Weiner and evenness indices were 1.538, 2.925, 3.251 and 2.940 and 0.436, 0.716, 0.791 and 0.768 in communities I, II, III and IV respectively. Species richness were 34, 36, 61 and 46 in communities I, II, III and IV respectively. Ruderal, chamaephytes, secondary, Africa tropical and least concerns plant species predominated in Pteridium vegetation areas with 76% 48%, 69%, 43% and 90% of total species respectively. Competitive, phanerophytes, primary, Afromontane and least concerns plant species dominated in non-dominated area with 54%, 52%, 58%, 40% and 88% of total species respectively. Pteridium aquilinum restricted the growth of trees as exhibited by the presence of few phanerophytes and enhanced the growth of ruderal species, both of which are indicators of disturbed forest. The tree species observed in P. aquilinum cut-areas was Macaranga kilimandischarica.

Plant functional traits regulate soil bacterial diversity across temperate deserts

Despite the known influence of plant diversity on soil microbial diversity, the potential role of plant functional traits in regulating soil bacterial diversity remains largely unclear. There is a lack of strong empirical evidence for the relative effects of plant diversity and functional traits on soil bacterial diversity across large-scale deserts. Here, we simultaneously explore the internal links among plant diversity, functional traits and soil bacterial diversity across 90 temperate deserts habitat of China, after accounting for confounding abiotic and spatial factors. The results showed that soil bacterial alpha and beta diversities were mainly determined by abiotic and spatial factors, follow by plant factors. However, plant diversity and functional traits played diverse roles in shaping soil bacterial alpha and beta diversities. Plant diversity exerted a substantial influence on soil bacterial beta diversity, but not on alpha diversity. In contrast, plant functional traits still directly influenced soil bacterial alpha and beta diversity, after accounting for other confounding key drivers. More precisely, plant functional traits surpass plant diversity in affecting soil bacterial alpha diversity. These results provide robust evidence that plant functional traits can effectively regulate soil bacterial diversity across temperate deserts. Taken together, we highlight the importance and irreplaceability of plant functional traits in predicting soil biodiversity under current and future global environmental changes.

Soil organic matter prevails over heavy metal pollution and vegetation as a factor shaping soil microbial communities at historical Zn-Pb mining sites

This study examined the effects of soil heavy metals, macronutrients, texture and pH as well as plant species richness and composition on soil respiration, enzymatic activity, microbial biomass, metabolic quotient (qCO₂) and arbuscular mycorrhizal fungi (AMF) at sites of historical Zn-Pb mining. The study was conducted both on a large scale (65 heaps scattered over the area of 750 km²) and on a small scale (25 plots along two 48 m transects extending from heaps to adjacent fallow fields). Total concentrations of metals exceeded 400 (Cd), 20,000 (Pb) and 80,000 (Zn) mg kg^-1 at the most polluted sites. Although they decreased along the heap-fallow direction, they still remained above environmental standards in fallow soils. In contrast, some soluble metal forms increased with the increasing distance from heaps. Soil organic matter had the strongest positive effect on most microbial parameters. Total and/or available heavy metals exhibited significant negative effects on microbial biomass, enzymatic activity and AMF, and a positive effect on qCO₂. Organic matter alleviated negative effects of heavy metals on microorganisms; they were not observed where the increase in the contamination was accompanied by the increase in organic matter content. Plant species richness affected positively enzymatic activity and mycorrhization level. Plant species composition possibly contributed to the formation of soil microbial communities, but its effect was entangled in that of heavy metals as plant communities changed along pollution gradients (from metal-tolerant grasslands dominated by Festuca ovina to calcareous grasslands and ruderal communities at less polluted sites).

The effects of habitat loss and fragmentation on plant functional traits and functional diversity: what do we know so far?

Habitat loss and fragmentation result in significant landscape changes that ultimately affect plant diversity and add uncertainty to how natural areas will respond to future global change. This uncertainty is important given that the loss of biodiversity often includes losing key ecosystem functions. Few studies have explored the effects of landscape changes on plant functional diversity and evidence so far has shown far more pervasive effects than previously reported by species richness and composition studies. Here we present a review on the impact of habitat loss and fragmentation on (1) individual functional traits-related to persistence, dispersal and establishment-and (2) functional diversity. We also discuss current knowledge gaps and propose ways forward. From the literature review we found that studies have largely focused on dispersal traits, strongly impacted by habitat loss and fragmentation, while traits related to persistence were the least studied. Furthermore, most studies did not distinguish habitat loss from spatial fragmentation and were conducted at the plot or fragment-level, which taken together limits the ability to generalize the scale-dependency of landscape changes on plant functional diversity. For future work, we recommend (1) clearly distinguishing the effects of habitat loss from those of fragmentation, and (2) recognizing the scale-dependency of predicted responses when functional diversity varies in time and space. We conclude that a clear understanding of the effects of habitat loss and fragmentation on functional diversity will improve predictions of the resiliency and resistance of plant communities to varying scales of disturbance.

Testing relationship between plant productivity and diversity in a desertified steppe in Northwest China

The rapid global plant diversity and productivity loss has resulted in ecosystem functional degeneration in recent decades, and the relationship between plant diversity and productivity is a pressing issue around the world. Here, we sampled six plant communities that have not been grazed for 20 years, i.e., Agropyron mongolicum, Stipa bungeana, Cynanchum komarovii, Glycyrrhiza uralensis, Sophora alopecuroides, Artemisia ordosica, located in a desertified steppe, northwestern China, and tested the relationship between plant diversity and productivity in this region. We found a positive linear relationship between AGB (above-ground biomass) and BGB (below-ground biomass), and the curves between plant diversity and AGB were unimodal (R² = 0.4572, p < 0.05), indicating that plant productivity increased at a low level of diversity but decreased at a high level of diversity. However, there was no significant relationship between BGB and plant diversity (p > 0.05). Further, RDA (redundancy analysis) indicated that soil factors had a strong effect on plant diversity and productivity. Totally, GAMs (generalized additive models) showed that soil factors (especially total nitrogen TN, total carbon TC, soil microbial biomass nitrogen SMB-N, soil microbial biomass carbon SMB-C) explained more variation in plant diversity and productivity (78.24%), which can be regarded as the key factors driving plant diversity and productivity. Therefore, strategies aiming to increase plant productivity and protect plant diversity may concentrate on promoting soil factors (e.g., increasing TC, TN, SMB-N and SMB-C) and plant species, which can be regarded as an effective and simple strategy to stabilize ecosystems to mitigate aridity in desertified steppes in northwestern China.

A Survey on Plant Viruses in Natural Brassicaceae Communities Using RNA-Seq

Studies on plant viruses are biased towards crop diseases and little is known about viruses in natural vegetation. We conducted extensive surveys of plant viruses in wild Brassicaceae plants occurring in three local plant communities in central Japan. We applied RNA-Seq with selective depletion of rRNA, which allowed us to detect infections of all genome-reported viruses simultaneously. Infections of Turnip mosaic virus (TuMV), Cucumber mosaic virus (CMV), Brassica yellows virus, Pelargonium zonate spot virus, and Arabidopsis halleri partitivirus 1 were detected from the two perennial species, Arabidopsis halleri subsp. gemmifera and Rorippa indica. De novo assembly further detected partial sequences of a putative novel virus in Arabis fragellosa. Virus species composition and infection rate differed depending on site and plant species. Viruses were most frequently detected from the perennial clonal plant, A. halleri, in which a high clonal transmission rate of viruses across multiple years was confirmed. Phylogenetic analysis of TuMV and CMV showed that virus strains from wild Brassicaceae were included as a major clade of these viruses with other reported strains from crop plants, suggesting that viruses were shared among wild plants and crops. Our studies indicated that distribution of viruses in natural plant populations are determined by the combinations of life histories of viruses and hosts. Revealing viral distribution in the natural plant communities improves our knowledge on the ecology of plant viruses.

[The sacred forests of Guinea: Between ecology and conservation]

Guinea has very little ecological data available regarding its sacred forests. This study shows the important conservation role of these forests in a local context of strong human impacts. We present four representative case studies from the Sudano-Guinean zone in Upper Guinea. Our phytoecological inventories recorded a total of 431 species, 312 genera, and 87 families including 242 species, 187 genera, and 64 families in the forests. Twelve plant groups have been identified, including five in forests and seven in the surrounding vegetation. Geomorphology, texture, soil hydromorphism, microclimate, and human impacts are significant in explaining the spatial distribution of plant groups. The study reveals that in these Sudano-Guinean savannas, vegetation is dominated by micro-phanerophytes. The Guinean-Congolese flora is better represented in gallery forests.

Flower-mediated plant-butterfly interactions in an heterogeneous tropical coastal ecosystem

BACKGROUND

Interspecific interactions play an important role in determining species richness and persistence in a given locality. However at some sites, the studies, especially for interaction networks on adult butterflies are scarce. The present study aimed the following objectives: (1) determine butterfly species richness and diversity that visit flowering plants, (2) compare species richness and diversity in butterfly-plant interactions among six different vegetation types and (3) analyze the structure of butterfly-flowering plant interaction networks mediated by flowers.

METHODS

The study was developed in six vegetation types within the natural reserve of La Mancha, located in Veracruz, Mexico. In each vegetation type, we recorded the frequency of flower visits by butterflies monthly in round plots (of radius 5 m) for 12 months. We calculated Shannon diversity for butterfly species and diversity of interactions per vegetation type. We determined the classic Jaccard similarity index among vegetation types and estimated parameters at network and species-level.

RESULTS

We found 123 species of butterflies belonging to 11 families and 87 genera. The highest number of species belonged to Hesperiidae (46 species), followed by Nymphalidae (28) and Pieridae (14). The highest butterfly diversity and interaction diversity was observed in pioneer dune vegetation (PDV), coastal dune scrub (CDS) and tropical deciduous flooding forest and wetland (TDF-W). The same order of vegetation types was found for interaction diversity. Highest species similarity was found between PDV-CDS and PDV-TDF. The butterfly-plant interaction network showed a nested structure with one module. The species Ascia monuste, Euptoieta hegesia and Leptotes cassius were the most generalist in the network, while Horama oedippus, E. hegesia, and L. cassius were the species with highest dependencies per plant species.

DISCUSSION

Our study is important because it constitutes a pioneer study of butterfly-plant interactions in this protected area, at least for adult butterflies; it shows the diversity of interactions among flowering plants and butterflies. Our research constitutes the first approach (at a community level) to explore the functional role of pollination services that butterflies provide to plant communities. We highlighted that open areas show a higher diversity and these areas shared a higher number of species that shaded sites. In the interaction networks parameters, our results highlighted the higher dependence of butterflies by the flowers on which they feed than vice versa. In conclusion, the plant species (as a feeding resource) seem to limit the presence of butterfly species. Thus, this protected area is highly relevant for Lepidoptera diversity and the interaction between these insects and flowering plants. We suggest that studying plant and butterfly diversity in tropical habitats will provide insight into their interspecific interactions and community structure.

Risk valuation of ecological resources at contaminated deactivation and decommissioning facilities: methodology and a case study at the Department of Energy's Hanford site

Many countries are faced with monumental cleanup tasks remaining from World War II and the Cold War and consistent methodologies are essential to assess the risk from pollutants and the risk from cleanup. In the USA, the Department of Energy (DOE), and other federal and state agencies need to be able to rapidly evaluate the risk to ecological resources for remediation projects. While ecological risk assessments for radionuclides and other contaminants can be performed for different species, evaluations of species assemblages, communities, and ecosystems is more difficult. We summarize an evaluation method for ecological resources on individual remediation units that will allow comparison among a large number of units and that can be modified and applied to the DOE complex-wide. We evaluated the deactivation and decommissioning (D & D) facilities at the Hanford site as case studies. Remediation of these sites has the potential to provide harm to, or increase the value of, ecological resources during and after the process. The evaluation method includes three categories: (1) general steps, (2) ecological descriptions, and (3) ecological ratings. The general steps include identifying the categories of resources (level of resource value), identifying the units to be evaluated (e.g., remediation units), identifying a reasonable ecological buffer around the evaluation units, identifying the remediation options (from milestones or other agreements), and developing a rating scale. Ecological descriptions include identifying previous ecological values of specific areas on the evaluation unit, conducting field studies to assess the current conditions, and summarizing the percent of each resource value on the evaluation unit and buffer area. The ecological risk of harm is determined by using the rating scale to evaluate the potential harm to the ecological (and eco-cultural) resources on each evaluation unit currently, during remediation, and in the post-remediation phase. Currently, the risks (potential harm) to ecological resources on the D & D facilities at the Hanford site are non-discernible, but they increase to very high (for reactors) during remediation when there is physical disruption, increased traffic and personnel, and possible increased contamination. Following remediation, the potential harm to ecological resources is low, and the value may be increased due to restoration of native vegetation on sites that were largely industrial prior to remediation. These methods provide managers, regulators, tribes, and the general public with assurance that ecological and eco-cultural resources and the environment are being protected during and following remediation.

Responses of serpentine plants to pine invasion: Vegetation diversity and nickel accumulation in species with contrasting adaptive strategies

Introduction of non-native trees is one of the major threats to ecosystem integrity and biodiversity. Stands of maritime pine (Pinus pinaster Ait.) introduced decades ago represent a threat to the specialized plant communities of serpentine outcrops in Italy. This study investigates the effects of such invasions at the community and species level, based on vegetation sampling in three selected sites with comparable environmental conditions. Pine cover caused a decrease of α-diversity by lowering the species evenness of the community, though species richness was not negatively affected. Compositional changes between the two habitats were significant but not clearly associated with a decrease in taxonomic distinctness in the pine stands. As many as nine indicator species were found in the open vegetation, along with the obligate endemics Odontarrhena bertolonii and Armeria denticulata. Both of them declined in the pine stands. Here, an increase in the phytoavailable nickel fraction was associated with a decrease in total nickel concentration in the soil, via mobilization of the metal caused by lowering of pH induced by the conifer litter. The nickel-hyperaccumulator O. bertolonii was able to maintain high metal concentrations in the shoots despite a decrease in root concentration, resulting in a higher shoot/root ratio in the pine stands (~20). Conversely, shoot/root ratio in the non-accumulator Plantago holosteum was <1 and not affected by the conifer, as well as its abundance in this anthropogenic habitat. Contrasting responses of the two species were likely due to their different sensitivity to modified light and soil conditions, whereas stability of shoot nickel-concentration in O. bertolonii did not support increased predation by natural enemies as one of the causes for its decline under the conifer. Progressive thinning of these stands is advocated to limit soil nickel mobilization and to restore a unique ecosystem with its endemic metallophytes.

Eco-Floristic studies of native plants of the Beer Hills along the Indus River in the districts Haripur and Abbottabad, Pakistan

The present study was conducted to elaborate vegetation composition structure to analyze role of edaphic and topographic factors on plant species distribution and community formation during 2013–14. A mixture of quadrat and transect methods were used. The size of quadrat for trees shrubs and herbs were 10 × 5, 5 × 2, 1 × 1 meter square respectively. Different phytosociological attribute were measured at each station. Primary results reported 123 plant species belong to 46 families. Asteraceae and Lamiaceae were dominant families with 8 species each. PCORD version 5 were used for Cluster and Two Way Cluster Analyses that initiated 4 plant communities within elevation range of 529–700 m from sea level. Indicator species analyses (ISA) were used to identify indicator species of each community. CANOCO Software (version 4.5) was used to measure the influence of edaphic and topographic variables on species composition, diversity and community formation. Whereas Canonical Correspondence Analysis (CCA) was used to measure the effect of environmental variables which showed elevation and aspect were the stronger environmental variable among topographic and CaCO₃ contents, electric conductivity, soil pH were the stronger edaphic factors in determination of vegetation and communities of the Bheer Hills. Grazing pressure was one of the main anthropogenic factors in this regard.

Plant species and communities assessment in interaction with edaphic and topographic factors; an ecological study of the mount Eelum District Swat, Pakistan

The current analyses of vegetation were aimed to study the different effects of environmental variables and plant species and communities interaction to these variables, identified threats to local vegetation and suggestion for remedial measures in the Mount Eelum, Swat, Pakistan. For assessment of environmental variability quantitative ecological techniques were used through quadrats having sizes of 2 × 2, 5 × 5 and 10 × 10 m² for herbs, shrubs and trees respectively. Result of the present study revealed 124 plant species in the study area. Canonical Correspondence Analysis (CCA) was used to analyze the ecological gradient of vegetation. The environmental data and species abundance were used in CANOCO software version 4.5. The presence absence data of plant species were elaborated with Cluster and Two Way Cluster Analysis techniques using PC-ORD version 5 to show different species composition that resulted in five plant communities. Findings indicate that elevation, aspect and soil texture are the strongest variables that have significant effect on species composition and distribution of various communities shown with P value 0.0500. It is recommended to protect and use sensibly whole of the Flora normally and rare species particularly in the region.

A century of ecosystem change: human and seabird impacts on plant species extirpation and invasion on islands

We used 116 years of floral and faunal records from Mandarte Island, British Columbia, Canada, to estimate the indirect effects of humans on plant communities via their effects on the population size of a surface-nesting, colonial seabird, the Glaucous-winged gull (Larus glaucescens). Comparing current to historical records revealed 18 extirpations of native plant species (32% of species historically present), 31 exotic species introductions, and one case of exotic introduction followed by extirpation. Contemporary surveys indicated that native species cover declined dramatically from 1986 to 2006, coincident with the extirpation of 'old-growth' conifers. Because vegetation change co-occurred with an increasing gull population locally and regionally, we tested several predictions from the hypothesis that the presence and activities of seabirds help to explain those changes. Specifically, we predicted that on Mandarte and nearby islands with gull colonies, we should observe higher nutrient loading and exotic plant species richness and cover than on nearby islands without gull colonies, as a consequence of competitive dominance in species adapted to high soil nitrogen and trampling. As predicted, we found that native plant species cover and richness were lower, and exotic species cover and richness higher, on islands with versus without gull colonies. In addition, we found that soil carbon and nitrogen on islands with nesting gulls were positively related to soil depth and exotic species richness and cover across plots and islands. Our results support earlier suggestions that nesting seabirds can drive rapid change in insular plant communities by increasing nutrients and disturbing vegetation, and that human activities that affect seabird abundance may therefore indirectly affect plant community composition on islands with seabird colonies.

Classification and ordination of main plant communities along an altitudinal gradient in the arid and temperate climates of northeastern Mexico

Quantitative data on the ecology of the main plant communities along an altitudinal gradient in northeastern Mexico were obtained with the aim of identifying the most important environmental variables that affect plant distribution and composition. The main threats to these communities were also investigated. Importance value index (IVi) of the 39 most important species and 16 environmental variables were recorded at 35 altitudinal gradients each spaced at intervals of at least 100-m altitude. Classification and ordination of vegetation showed six well-differentiated but overlapping plant communities: alpine meadow, cold conifer forest, mesic mixed forest, xeric scrub, Tamaulipan piedmont scrub, and halophytic grassland. Altitude, minimum and average temperatures, and organic matter content are the main variables affecting the plant distribution in northeastern Mexico. Urban growth, mechanized agriculture, and changes in land use are the main threats in the short and medium term to plant communities in this area. Climate change also seems to be having an impact at present or in the near future as shown by the presence of exotic shrubs from warmer areas in mesic and temperate areas inhabited by oak and oak-pine forest.

Phytoecological evaluation with detail floristic appraisal of the vegetation arround Malam Jabba, Swat, Pakistan

OBJECTIVE

To determine the present status of plant communities and their possible association with the habitat in Malam Jabba, Swat, Pakistan.

METHODS

A study on the phytoecology was conducted in various ecologically important sites of Malam Jabba, Swat, Pakistan from 2002 to 2004. The altitude of these sites ranged from 1 200 m to 3 200 m. Quadrat method was used for evaluation of plants communities and the data on these attributes was converted to relative values. The plant communities were named after 3 leading species with highest importance values. Biological spectrum of the flora based on the life form was prepared by following Raunkiar's life form classes.

RESULTS

The floristic composition and structure of the study area were found to be 200 species belonging to 75 families. Asteraceae, Lamiaceae and Poaceae were important families in the study area. The biological spectrum showed that therophytic and hemicrytophytic life form and micro-nonophyllous leaf sizes were dominant in the area. The air and soil temperatures were decreasing with increasing elevation. Both the air and soil temperatures were relatively higher in south slopes than on the northeast slopes. The vegetation analysis of the area indicated eleven plant communities around the area. The present vegetation is the relics of moist temperate coniferous forest in the area. The communities reflect highly deteriorated conditions. Both the structure and composition of the surrounding vegetation were associated with the types of habitats.

CONCLUSIONS

The conservation of the remaining populations of the reported communities will be best achieved by proper time of sustainable harvesting. It is only possible with the participation of local communities.

Effects of single and multiple applications of glyphosate or aminopyralid on simple constructed plant communities

To determine effects of multiple applications of herbicides on small constructed plant communities, Prunella vulgaris L.var. lanceolata Fern, Festuca roemeri (Pavlick) Alexeev, Clarkia amoena (Lehm.) Nels., and Cynosurus echinatus L. were grown together in small field plots. Plants were treated with glyphosate at target concentrations of 0 × , 0.01 × , 0.1 × , and 0.2× a field application rate (FAR) of 1122 g ha(-1) active ingredient (a.i.) for 3 yr in 1 location, and for 2 yr in a second location. Plants also were treated with aminopyralid at 0 × , 0.037 × , 0.136 × , and 0.5× FAR of 123 g ha(-1) a.i. for 2 yr in 2 locations. Plants received 1, 2, or 3 applications of each herbicide each year. Species and community responses depended on herbicide concentration and number of applications. With glyphosate, plant volume (modified formula for a cone) tended to decrease for all species (especially C. echinatus), and the decreases generally became larger with more applications. Plant communities exposed to the 2 greatest concentrations initially differed from controls but then appeared to recover. With aminopyralid, C. amoena was essentially eliminated from the communities, especially at the 2 greatest FARs, whereas the other 3 species tended to have significant increases in volume, especially at the 2 smallest FARs. With aminopyralid, increasing numbers of applications produced variable results, and the plant community volume never tended to recover.

Economically and ecologically important plant communities in high altitude coniferous forest of Malam Jabba, Swat, Pakistan

A study on the economically important plant communities was carried out during summer 2008 in various parts of Malam Jabba valley, Swat. The principal aim of the study was phytosociological evaluation with special reference to the occurrence of commercially important medicinal plant species in coniferous forest of the study area. Secondly to prepare ethnobotanical inventory of the plant resources of the area, as well as to evaluate the conservation status of important medicinal and aromatic plants (MAPs) through rapid vulnerable assessment (RVA) procedure. The study documented 90 species of ethnobotanical importance, out of these 71 spp used as medicinal plant, 20 spp fodder plant, 10 spp vegetables, 14 spp wild fruit, 18 spp fuel wood, 9 spp furniture and agricultural tools, 9 spp thatching, fencing and hedges, 4 spp honey bee, 2 spp evil eyes, 2 spp religious and 3 spp as poison. Phytosociologically six plant communities were found, comprising five herbs-shrubs-trees communities and one meadow community. Further study is, therefore, required to quantify the availability of species and to suggest suitable method for their production and conservation. Recommendations are also given in the spheres of training in identification, sustainable collection, value addition, trade monitoring and cooperative system of marketing.