1
|
Sarkar B, Kotal HN, Giri CK, Mandal A, Hudait N, Madhu NR, Saha S, Basak SK, Sengupta J, Ray K. Detection of a bibenzyl core scaffold in 28 common mangrove and associate species of the Indian Sundarbans: potential signature molecule for mangrove salinity stress acclimation. Front Plant Sci 2024; 14:1291805. [PMID: 38293624 PMCID: PMC10824835 DOI: 10.3389/fpls.2023.1291805] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Accepted: 12/31/2023] [Indexed: 02/01/2024]
Abstract
Bibenzyl derivatives comprising two benzene rings are secondary plant metabolites with significant therapeutic value. To date, bibenzyl derivatives in the Plant kingdom have been primarily identified in bryophytes, orchids, and Cannabis sativa. The metabolic cost investment by plant species for the synthesis of these bioactive secondary metabolites is rationalized as a mechanism of plant defense in response to oxidative stress induced by biotic/abiotic factors. Bibenzyl derivatives are synthesized from core phenylpropanoid biosynthetic pathway offshoots in plant species. Mangrove and mangrove associate species thrive under extreme ecological niches such as a hypersaline intertidal environment through unique adaptive and acclimative characteristics, primarily involving osmotic adjustments followed by oxidative stress abatement. Several primary/secondary bioactive metabolites in mangrove species have been identified as components of salinity stress adaptation/acclimation/mitigation; however, the existence of a bibenzyl scaffold in mangrove species functioning in this context remains unknown. We here report the confirmed detection of a core bibenzyl scaffold from extensive gas chromatography-mass spectrometry and gas chromatography-flame ionization detection analyses of 28 mangrove and mangrove associate species from the Indian Sundarbans. We speculate that the common presence of this bibenzyl core molecule in 28 mangrove and associate species may be related to its synthesis via branches of the phenylpropanoid biosynthetic pathway induced under high salinity, which functions to detoxify reactive oxygen species as a protection for the maintenance of plant metabolic processes. This finding reveals a new eco-physiological functional role of bibenzyls in unique mangrove ecosystem.
Collapse
Affiliation(s)
- Bhanumati Sarkar
- Department of Botany, Acharya Prafulla Chandra College, Kolkata, West Bengal, India
| | - Hemendra Nath Kotal
- Environmental Biotechnology Group, Department of Botany, West Bengal State University, Kolkata, India
| | - Chayan Kumar Giri
- Environmental Biotechnology Group, Department of Botany, West Bengal State University, Kolkata, India
| | - Anup Mandal
- Environmental Biotechnology Group, Department of Botany, West Bengal State University, Kolkata, India
| | - Nandagopal Hudait
- Department of Chemistry, West Bengal State University, Kolkata, India
| | - Nithar Ranjan Madhu
- Department of Zoology, Acharya Prafulla Chandra College, Kolkata, West Bengal, India
| | - Subhajit Saha
- Environmental Biotechnology Group, Department of Botany, West Bengal State University, Kolkata, India
| | - Sandip Kumar Basak
- Department of Botany, Sarat Centenary College, Dhaniakhali, West Bengal, India
| | - Jhimli Sengupta
- Department of Chemistry, West Bengal State University, Kolkata, India
| | - Krishna Ray
- Environmental Biotechnology Group, Department of Botany, West Bengal State University, Kolkata, India
| |
Collapse
|
2
|
Ramos-Tapia I, Salinas P, Núñez R, Cortez D, Soto J, Paneque M. Compositional Changes in Sediment Microbiota Are Associated with Seasonal Variation of the Water Column in High-Altitude Hyperarid Andean Lake Systems. Microbiol Spectr 2023; 11:e0520022. [PMID: 37102964 PMCID: PMC10269505 DOI: 10.1128/spectrum.05200-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2022] [Accepted: 04/10/2023] [Indexed: 04/28/2023] Open
Abstract
The lacustrine systems of La Brava and La Punta, located in the Tilopozo sector in the extreme south of Salar de Atacama, are pristine high-altitude Andean lakes found along the central Andes of South America. This shallow ecosystem suffers from permanent evaporation, leading to falling water levels, causing it to recede or disappear during the dry season. This dynamic causes physicochemical changes in lakes, such as low nutrient availability, pH change, and dissolved metals, which can influence the composition of the microbial community. In this study, we used a metataxonomic approach (16S rRNA hypervariable regions V3 to V4) to characterize the sedimentary microbiota of these lakes. To understand how the water column affects and is structured in the microbiota of these lakes, we combined the analysis of the persistence of the water column through satellite images and physicochemical characterization. Our results show a significant difference in abiotic factors and microbiota composition between La Punta and La Brava lakes. In addition, microbiota analysis revealed compositional changes in the ecological disaggregation (main and isolated bodies) and antagonistic changes in the abundance of certain taxa between lakes. These findings are an invaluable resource for understanding the microbiological diversity of high Andean lakes using a multidisciplinary approach that evaluates the microbiota behavior in response to abiotic factors. IMPORTANCE In this study, we analyzed the persistence of the water column through satellite images and physicochemical characterization to investigate the composition and diversity in High Andean Lake Systems in a hyperarid environment. In addition to the persistence of the water column, this approach can be used to analyze changes in the morphology of saline accumulations and persistence of snow or ice; for example, for establishing variable plant cover over time and evaluating the microbiota associated with soils with seasonal changes in plants. This makes it an ideal approach to search for novel extremophilic microorganisms with unique properties. In our case, it was used to study microorganisms capable of resisting desiccation and water restriction for a considerable period and adapting to survive in ecological niches, such as those with high UV irradiation, extreme drought, and high salt concentration.
Collapse
Affiliation(s)
- Ignacio Ramos-Tapia
- Departamento de Metagenómica, Fundación Bionostra Chile Research, San Miguel, Santiago, Chile
| | - Pamela Salinas
- Departamento de Metagenómica, Fundación Bionostra Chile Research, San Miguel, Santiago, Chile
| | - Reynaldo Núñez
- Departamento de Metagenómica, Fundación Bionostra Chile Research, San Miguel, Santiago, Chile
| | - Donna Cortez
- Departamento de Metagenómica, Fundación Bionostra Chile Research, San Miguel, Santiago, Chile
| | - Jorge Soto
- Departamento de Metagenómica, Fundación Bionostra Chile Research, San Miguel, Santiago, Chile
| | - Manuel Paneque
- Laboratory of Bioenergy and Environmental Biotechnology, Department of Environmental Sciences and Natural Resources, Faculty of Agricultural Sciences, University of Chile, La Pintana, Santiago, Chile
| |
Collapse
|
3
|
Dawood MAO, Sewilam H. The combined effects of salinity and ammonia on the growth behavior, stress-related markers, and hepato-renal function of common carp (Cyprinus carpio). J Exp Zool A Ecol Integr Physiol 2023; 339:74-82. [PMID: 36089758 DOI: 10.1002/jez.2654] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2021] [Revised: 08/23/2022] [Accepted: 08/26/2022] [Indexed: 12/15/2022]
Abstract
One of the most critical factors affecting aquaculture efficiency is the capability of releasing ammonia from the water. By applying a high salinity strategy, this study provides a prompt approach for removing high ammonia levels and relieving its adverse impacts on common carp. The study investigated five groups with triplicates where the control was kept with fresh water, and the remaining four groups stressed with different salinity levels (5, 10, 15, and 20 ppt) for 8 weeks. Then fish were exposed to unionized ammonia (NH3 ) stress (0.5 ppm) for 6 h. The final weight (FBW) and weight gain (WG) showed lower values in fish stressed with 15 and 20 ppt salinity levels than fish reared in 0 and 5 ppt salinity levels (p < 0.05). The lowest FBW and WG and the highest feed conversion ratio were shown in fish grown in 20 ppt (p < 0.05). The survival rate was markedly lowered by 15 and 20 ppt salinity levels (p < 0.05), while no significant differences were observed among 0, 5, and 10 ppt salinity levels (p > 0.05). Liver condition-related indices (alanine aminotransferase, aspartate aminotransferase, and alanine aminotransferase) were markedly increased in fish grown in 15 and 20 ppt before or after ammonia stress (p < 0.05). The results showed higher creatinine levels in fish raised in 15 and 20 ppt than the remaining salinity levels, with the highest value in fish of 20 ppt salinity before and after ammonia stress (p < 0.05). Markedly the blood glucose and cortisol levels were upraised in fish reared in 10, 15, and 20 ppt before and after ammonia stress (p < 0.05). The glucose level was not significantly different in fish reared in 5 ppt than 0 and 10 ppt salinity levels (p < 0.05). Generally, the blood glucose and cortisol levels were decreased markedly after ammonia stress than before ammonia stress (p < 0.05). Interestingly, total protein, albumin, and globulin levels were increased in common carp reared in different salinity levels after ammonia stress (p < 0.05). In conclusion, ammonia toxicity combined with high salinity resulted in a regulatory effect on the hepato-renal function and stress-related markers in common carp.
Collapse
Affiliation(s)
- Mahmoud A O Dawood
- Animal Production Department, Faculty of Agriculture, Kafrelsheikh University, Kafr El-Sheikh, Egypt.,The Center for Applied Research on the Environment and Sustainability, The American University in Cairo, Cairo, Egypt
| | - Hani Sewilam
- The Center for Applied Research on the Environment and Sustainability, The American University in Cairo, Cairo, Egypt.,Department of Engineering Hydrology, RWTH Aachen University, Aachen, Germany
| |
Collapse
|
4
|
Ramos-Tapia I, Nuñez R, Salinas C, Salinas P, Soto J, Paneque M. Study of Wetland Soils of the Salar de Atacama with Different Azonal Vegetative Formations Reveals Changes in the Microbiota Associated with Hygrophile Plant Type on the Soil Surface. Microbiol Spectr 2022;:e0053322. [PMID: 36121227 DOI: 10.1128/spectrum.00533-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Salar de Atacama is located approximately 55 km south of San Pedro de Atacama in the Antofagasta region, Chile. The high UV irradiation and salt concentration and extreme drought make Salar de Atacama an ideal site to search for novel soil microorganisms with unique properties. Here, we used a metataxonomic approach (16S rRNA V3-V4) to identify and characterize the soil microbiota associated with different surface azonal vegetation formations, including strict hygrophiles (Baccharis juncea, Juncus balticus, and Schoenoplectus americanus), transitional hygrophiles (Distichlis spicata, Lycium humile, and Tessaria absinthioides), and their various combinations. We detected compositional differences among the soil surface microbiota associated with each plant formation in the sampling area. There were changes in soil microbial phylogenetic diversity from the strict to the transitional hygrophiles. Moreover, we found alterations in the abundance of bacterial phyla and genera. Halobacteriota and Actinobacteriota might have facilitated water uptake by the transitional hygrophiles. Our findings helped to elucidate the microbiota of Salar de Atacama and associate them with the strict and transitional hygrophiles indigenous to the region. These findings could be highly relevant to future research on the symbiotic relationships between microbiota and salt-tolerant plants in the face of climate change-induced desertification. IMPORTANCE The study of the composition and diversity of the wetland soil microbiota associated with hygrophilous plants in a desert ecosystem of the high Puna in northern Chile makes it an ideal approach to search for novel extremophilic microorganisms with unique properties. These microorganisms are adapted to survive in ecological niches, such as those with high UV irradiation, extreme drought, and high salt concentration; they can be applied in various fields, such as biotechnology and astrobiology, and industries, including the pharmaceutical, food, agricultural, biofuel, cosmetic, and textile industries. These microorganisms can also be used for ecological conservation and restoration. Extreme ecosystems are a unique biological resource and biodiversity hot spots that play a crucial role in maintaining environmental sustainability. The findings could be highly relevant to future research on the symbiotic relationships between microbiota and extreme-environment-tolerant plants in the face of climate change-induced desertification.
Collapse
|
5
|
Yang C, Zhou Q, Ma Q, Wang L, Yang Y, Chen G. Differentially Expressed miRNAs and mRNAs in Regenerated Scales of Rainbow Trout ( Oncorhynchus mykiss) under Salinity Acclimation. Animals (Basel) 2022; 12:ani12101265. [PMID: 35625112 PMCID: PMC9137548 DOI: 10.3390/ani12101265] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2022] [Revised: 04/29/2022] [Accepted: 05/10/2022] [Indexed: 02/04/2023] Open
Abstract
In order to explore the potential effects of salinity acclimation on bone metabolism of rainbow trout (Oncorhynchus mykiss), transcriptional information of regenerated scales under salinity acclimation (sea water, SW) was compared to those of fish under fresh water (FW) environments. According to the high-throughput sequencing results, a total of 2620 significantly differentially expressed genes (DEGs) were identified in the data of SW vs. FW. Compared with the FW group, six significantly downregulated and 44 significantly upregulated miRNAs were identified in the SW scales (p < 0.05). Furthermore, a total of 994 significantly differentially expressed target genes (DETGs) were identified from the 50 significantly differentially expressed miRNAs (DE miRNAs). Gene ontology analysis of the aforementioned DETGs was similar to the results of the differentially expressed genes (DEGs) obtained from mRNA-seq data, these genes were mainly related to ion metabolism. KEGG enrichment analysis of the DEGs and DETGs suggested that many significantly enriched pathways were related to the energy metabolism pathway.
Collapse
Affiliation(s)
- Changgeng Yang
- Life Science & Technology School, Lingnan Normal University, Zhanjiang 524048, China;
| | - Qiling Zhou
- College of Fisheries, Guangdong Ocean University, Zhanjiang 524025, China; (Q.Z.); (L.W.); (Y.Y.); (G.C.)
| | - Qian Ma
- College of Fisheries, Guangdong Ocean University, Zhanjiang 524025, China; (Q.Z.); (L.W.); (Y.Y.); (G.C.)
- Southern Marine Science and Engineering Guangdong Laboratory, Zhanjiang 524025, China
- Correspondence:
| | - Liuyong Wang
- College of Fisheries, Guangdong Ocean University, Zhanjiang 524025, China; (Q.Z.); (L.W.); (Y.Y.); (G.C.)
| | - Yunsheng Yang
- College of Fisheries, Guangdong Ocean University, Zhanjiang 524025, China; (Q.Z.); (L.W.); (Y.Y.); (G.C.)
| | - Gang Chen
- College of Fisheries, Guangdong Ocean University, Zhanjiang 524025, China; (Q.Z.); (L.W.); (Y.Y.); (G.C.)
- Southern Marine Science and Engineering Guangdong Laboratory, Zhanjiang 524025, China
| |
Collapse
|
6
|
Dewaele L, Gol'din P, Marx FG, Lambert O, Laurin M, Obadă T, de Buffrénil V. Hypersalinity drives convergent bone mass increases in Miocene marine mammals from the Paratethys. Curr Biol 2021; 32:248-255.e2. [PMID: 34813730 DOI: 10.1016/j.cub.2021.10.065] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2021] [Revised: 10/15/2021] [Accepted: 10/28/2021] [Indexed: 11/17/2022]
Abstract
Pachyosteosclerosis-a condition that creates dense, bulky bones-often characterizes the early evolution of secondarily aquatic tetrapods like whales and dolphins1-3 but then usually fades away as swimming efficiency increases.4 Here, we document a remarkable reversal of this pattern, namely the convergent re-emergence of bone densification in Miocene seals, dolphins, and whales from the epicontinental Paratethys Sea of eastern Europe and central Asia. This phenomenon was driven by imbalanced remodeling and inhibited resorption of primary trabeculae and coincided with hypersaline conditions-the Badenian salinity crisis-that affected the Central Paratethys between 13.8 and 13.4 Ma.5 Dense bones acting as ballast would have facilitated efficient swimming in the denser and more buoyant water and hence were likely adaptive in this setting. From the Central Paratethys, pachyosteosclerosis subsequently spread eastward, where it became a defining feature of the endemic late Miocene whale assemblage.6,7.
Collapse
Affiliation(s)
- Leonard Dewaele
- EDDy Lab, Department of Geology, Liège University, Quartier Agora, 14 Allée du six Août, Liège 4000, Belgium; Directorate Earth and History of Life, Royal Belgian Institute of Natural Sciences, 29 Rue Vautier, Brussels 1000, Belgium.
| | - Pavel Gol'din
- Schmalhausen Institute of Zoology, National Academy of Sciences of Ukraine, vul. Bogdana Khmelnytskogo 15, Kyiv 01030, Ukraine; Ukrainian Scientific Centre of Ecology of the Sea, Frantsuzsky Blvrd. 89, Odessa 65009, Ukraine.
| | - Felix G Marx
- Museum of New Zealand Te Papa Tongarewa, 169 Tory Street, Wellington 6011, New Zealand; Department of Geology, University of Otago, 360 Leith Walk, Dunedin 9054, New Zealand.
| | - Olivier Lambert
- Directorate Earth and History of Life, Royal Belgian Institute of Natural Sciences, 29 Rue Vautier, Brussels 1000, Belgium.
| | - Michel Laurin
- UMR 7207 (CNRS ⁄ MNHN ⁄ UPMC, Sorbonne Universités), Centre de Recherches de Paléontologie - Paris (CR2P), Muséum National d'Histoire Naturelle, Paris 75005, France.
| | - Theodor Obadă
- Institute of Zoology, Academy of Sciences of Moldova, str. Academiei, 1 MD-2028, Chișinău, Moldova.
| | - Vivian de Buffrénil
- UMR 7207 (CNRS ⁄ MNHN ⁄ UPMC, Sorbonne Universités), Centre de Recherches de Paléontologie - Paris (CR2P), Muséum National d'Histoire Naturelle, Paris 75005, France.
| |
Collapse
|
7
|
Hu B, Zhao JY, Nie Y, Qin XY, Zhang KD, Xing JM, Wu XL. Bioemulsification and Microbial Community Reconstruction in Thermally Processed Crude Oil. Microorganisms 2021; 9:microorganisms9102054. [PMID: 34683375 PMCID: PMC8539444 DOI: 10.3390/microorganisms9102054] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2021] [Revised: 09/10/2021] [Accepted: 09/11/2021] [Indexed: 11/16/2022] Open
Abstract
Utilization of low-cost, environmental-friendly microbial enhanced oil recovery (MEOR) techniques in thermal recovery-processed oil reservoirs is potentially feasible. However, how exogenous microbes facilitate crude oil recovery in this deep biosphere, especially under mesophilic conditions, is scarcely investigated. In this study, a thermal treatment and a thermal recurrence were processed on crude oil collected from Daqing Oilfield, and then a 30-day incubation of the pretreated crude oil at 37 °C was operated with the addition of two locally isolated hydrocarbon-degrading bacteria, Amycolicicoccus subflavus DQS3-9A1T and Dietzia sp. DQ12-45-1b, respectively. The pH, surface tension, hydrocarbon profiles, culture-dependent cell densities and taxonomies, and whole and active microbial community compositions were determined. It was found that both A. subflavus DQS3-9A1T and Dietzia sp. DQ12-45-1b successfully induced culture acidification, crude oil bioemulsification, and residual oil sub-fraction alteration, no matter whether the crude oil was thermally pretreated or not. Endogenous bacteria which could proliferate on double heated crude oil were very few. Compared with A. subflavus, Dietzia sp. was substantially more effective at inducing the proliferation of varied species in one-time heated crude oil. Meanwhile, the effects of Dietzia sp. on crude oil bioemulsification and hydrocarbon profile alteration were not significantly influenced by the ploidy increasing of NaCl contents (from 5 g/L to 50 g/L), but the reconstructed bacterial communities became very simple, in which the Dietzia genus was predominant. Our study provides useful information to understand MEOR trials on thermally processed oil reservoirs, and proves that this strategy could be operated by using the locally available hydrocarbon-degrading microbes in mesophilic conditions with different salinity degrees.
Collapse
Affiliation(s)
- Bing Hu
- Group of Biochemical Engineering, Department of Chemical Engineering, College of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing 102401, China;
- Key Laboratory of Medical Molecule Science and Pharmaceutics Engineering, Ministry of Industry and Information Technology of China, Beijing 102401, China
| | - Jie-Yu Zhao
- College of Engineering, Peking University, Beijing 100871, China; (J.-Y.Z.); (X.-Y.Q.); (K.-D.Z.)
| | - Yong Nie
- College of Engineering, Peking University, Beijing 100871, China; (J.-Y.Z.); (X.-Y.Q.); (K.-D.Z.)
- Correspondence: (Y.N.); (X.-L.W.)
| | - Xiao-Yu Qin
- College of Engineering, Peking University, Beijing 100871, China; (J.-Y.Z.); (X.-Y.Q.); (K.-D.Z.)
| | - Kai-Duan Zhang
- College of Engineering, Peking University, Beijing 100871, China; (J.-Y.Z.); (X.-Y.Q.); (K.-D.Z.)
| | - Jian-Min Xing
- CAS Key Laboratory of Green Process and Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing 100190, China;
- State Key Laboratory of Biochemical Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing 100190, China
| | - Xiao-Lei Wu
- College of Engineering, Peking University, Beijing 100871, China; (J.-Y.Z.); (X.-Y.Q.); (K.-D.Z.)
- Institute of Ecology, Peking University, Beijing 100871, China
- Correspondence: (Y.N.); (X.-L.W.)
| |
Collapse
|
8
|
Rapp JZ, Sullivan MB, Deming JW. Divergent Genomic Adaptations in the Microbiomes of Arctic Subzero Sea-Ice and Cryopeg Brines. Front Microbiol 2021; 12:701186. [PMID: 34367102 PMCID: PMC8339730 DOI: 10.3389/fmicb.2021.701186] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2021] [Accepted: 06/29/2021] [Indexed: 11/16/2022] Open
Abstract
Subzero hypersaline brines are liquid microbial habitats within otherwise frozen environments, where concentrated dissolved salts prevent freezing. Such extreme conditions presumably require unique microbial adaptations, and possibly altered ecologies, but specific strategies remain largely unknown. Here we examined prokaryotic taxonomic and functional diversity in two seawater-derived subzero hypersaline brines: first-year sea ice, subject to seasonally fluctuating conditions; and ancient cryopeg, under relatively stable conditions geophysically isolated in permafrost. Overall, both taxonomic composition and functional potential were starkly different. Taxonomically, sea-ice brine communities (∼105 cells mL–1) had greater richness, more diversity and were dominated by bacterial genera, including Polaribacter, Paraglaciecola, Colwellia, and Glaciecola, whereas the more densely inhabited cryopeg brines (∼108 cells mL–1) lacked these genera and instead were dominated by Marinobacter. Functionally, however, sea ice encoded fewer accessory traits and lower average genomic copy numbers for shared traits, though DNA replication and repair were elevated; in contrast, microbes in cryopeg brines had greater genetic versatility with elevated abundances of accessory traits involved in sensing, responding to environmental cues, transport, mobile elements (transposases and plasmids), toxin-antitoxin systems, and type VI secretion systems. Together these genomic features suggest adaptations and capabilities of sea-ice communities manifesting at the community level through seasonal ecological succession, whereas the denser cryopeg communities appear adapted to intense bacterial competition, leaving fewer genera to dominate with brine-specific adaptations and social interactions that sacrifice some members for the benefit of others. Such cryopeg genomic traits provide insight into how long-term environmental stability may enable life to survive extreme conditions.
Collapse
Affiliation(s)
- Josephine Z Rapp
- School of Oceanography, University of Washington, Seattle, WA, United States
| | - Matthew B Sullivan
- Byrd Polar and Climate Research Center, Ohio State University, Columbus, OH, United States.,Department of Microbiology, Ohio State University, Columbus, OH, United States.,Department of Civil, Environmental and Geodetic Engineering, Ohio State University, Columbus, OH, United States.,Center of Microbiome Science, Ohio State University, Columbus, OH, United States
| | - Jody W Deming
- School of Oceanography, University of Washington, Seattle, WA, United States
| |
Collapse
|
9
|
Ordóñez-Grande B, Guerreiro PM, Sanahuja I, Fernández-Alacid L, Ibarz A. Evaluation of an Acute Osmotic Stress in European Sea Bass via Skin Mucus Biomarkers. Animals (Basel) 2020; 10:ani10091546. [PMID: 32882946 PMCID: PMC7552241 DOI: 10.3390/ani10091546] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2020] [Revised: 08/10/2020] [Accepted: 08/28/2020] [Indexed: 01/15/2023] Open
Abstract
Simple Summary Skin mucus biomarkers have become relevant indicators for studying fish physiological status and welfare. Here, we evaluated them in terms of the acute osmotic response of the sea bass. Change of mucus volume exuded and main stress-related metabolites explain the putative energy loss implied in a hyper/hypo-osmotic response. We demonstrated that skin mucus is a valuable tool, comparable to classical blood markers, for evaluating sea bass response to acute salinity challenges as well as some other potentially stressful situations. This technique will allow ecologists, physiologists, and aquafarmers to monitor fish welfare and to analyse endangered migrating species without affecting their vulnerable populations. Abstract European sea bass is a marine teleost which can inhabit a broad range of environmental salinities. So far, no research has studied the physiological response of this fish to salinity challenges using modifications in skin mucus as a potential biological matrix. Here, we used a skin mucus sampling technique to evaluate the response of sea bass to several acute osmotic challenges (for 3 h) from seawater (35‰) to two hypoosmotic environments, diluted brackish water (3‰) and estuarine waters (12‰), and to one hyperosmotic condition (50‰). For this, we recorded the volume of mucus exuded and compared the main stress-related biomarkers and osmosis-related parameters in skin mucus and plasma. Sea bass exuded the greatest volume of skin mucus with the highest total contents of cortisol, glucose, and protein under hypersalinity. This indicates an exacerbated acute stress response with possible energy losses if the condition is sustained over time. Under hyposalinity, the response depended on the magnitude of the osmotic change: shifting to 3‰ was an extreme salinity change, which affected fish aerobic metabolism by acutely modifying lactate exudation. All these data enhance the current scarce knowledge of skin mucus as a target through which to study environmental changes and fish status.
Collapse
Affiliation(s)
- Borja Ordóñez-Grande
- Department of Cell Biology, Physiology and Immunology, University of Barcelona (UB), 08028 Barcelona, Spain; (B.O.-G.); (I.S.); (A.I.)
| | - Pedro M. Guerreiro
- CCMAR—Centre for Marine Sciences, University of Algarve, 8005-139 Faro, Portugal;
| | - Ignasi Sanahuja
- Department of Cell Biology, Physiology and Immunology, University of Barcelona (UB), 08028 Barcelona, Spain; (B.O.-G.); (I.S.); (A.I.)
| | - Laura Fernández-Alacid
- Department of Cell Biology, Physiology and Immunology, University of Barcelona (UB), 08028 Barcelona, Spain; (B.O.-G.); (I.S.); (A.I.)
- Correspondence:
| | - Antoni Ibarz
- Department of Cell Biology, Physiology and Immunology, University of Barcelona (UB), 08028 Barcelona, Spain; (B.O.-G.); (I.S.); (A.I.)
| |
Collapse
|
10
|
Harding T, Simpson AGB. Recent Advances in Halophilic Protozoa Research. J Eukaryot Microbiol 2018; 65:556-570. [PMID: 29266533 DOI: 10.1111/jeu.12495] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2017] [Revised: 11/14/2017] [Accepted: 12/08/2017] [Indexed: 11/30/2022]
Abstract
Most research on microorganisms adapted to hypersaline habitats has focused on Archaea and Bacteria, with microbial eukaryotes receiving much less attention. Over the past 15 yr, our knowledge of phagotrophic microbial eukaryotes, i.e. protozoa, from hypersaline habitats has greatly improved through combinations of microscopy, molecular phylogenetics, environmental sequencing, transcriptomics and growth experiments. High salinity waters from salterns, other landlocked water masses and deep hypersaline anoxic basins contain unique and diverse halophilic protozoan assemblages. These have the potential to exert substantial grazing pressure on prokaryotes and other eukaryotes. They represent many separate evolutionary lineages; species of Heterolobosea, Bicosoecida, and Ciliophora have been most intensively characterized, with several proven to be extreme (or borderline extreme) halophiles. Transcriptomic examinations of the bicosoecid Halocafeteria (and the heteroloboseid Pharyngomonas) indicate that high-salt adaptation is associated with a subtle shift in protein amino acid composition, and involves the differential expression of genes participating in ion homeostasis, signal transduction, stress management, and lipid remodeling. Instances of gene duplication and lateral transfer possibly conferring adaptation have been documented. Indirect evidence suggests that these protozoa use "salt-out" osmoadaptive strategies.
Collapse
Affiliation(s)
- Tommy Harding
- Department of Biochemistry and Molecular Biology, Centre for Comparative Genomics and Evolutionary Bioinformatics, Dalhousie University, Halifax, NS, B3H 4R2, Canada
| | - Alastair G B Simpson
- Department of Biology, and Centre for Comparative Genomics and Evolutionary Bioinformatics, Dalhousie University, Halifax, NS, B3H 4R2, Canada
| |
Collapse
|
11
|
Grattieri M, Shivel ND, Sifat I, Bestetti M, Minteer SD. Sustainable Hypersaline Microbial Fuel Cells: Inexpensive Recyclable Polymer Supports for Carbon Nanotube Conductive Paint Anodes. ChemSusChem 2017; 10:2053-2058. [PMID: 28244231 DOI: 10.1002/cssc.201700099] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2017] [Revised: 02/26/2017] [Indexed: 06/06/2023]
Abstract
Microbial fuel cells are an emerging technology for wastewater treatment, but to be commercially viable and sustainable, the electrode materials must be inexpensive, recyclable, and reliable. In this study, recyclable polymeric supports were explored for the development of anode electrodes to be applied in single-chamber microbial fuel cells operated in field under hypersaline conditions. The support was covered with a carbon nanotube (CNT) based conductive paint, and biofilms were able to colonize the electrodes. The single-chamber microbial fuel cells with Pt-free cathodes delivered a reproducible power output after 15 days of operation to achieve 12±1 mW m-2 at a current density of 69±7 mA m-2 . The decrease of the performance in long-term experiments was mostly related to inorganic precipitates on the cathode electrode and did not affect the performance of the anode, as shown by experiments in which the cathode was replaced and the fuel cell performance was regenerated. The results of these studies show the feasibility of polymeric supports coated with CNT-based paint for microbial fuel cell applications.
Collapse
Affiliation(s)
- Matteo Grattieri
- Departments of Chemistry and Material Science and Engineering, University of Utah, 315 S 1400 E Rm 2020, Salt Lake City, UT, 84112, USA
| | - Nelson D Shivel
- Departments of Chemistry and Material Science and Engineering, University of Utah, 315 S 1400 E Rm 2020, Salt Lake City, UT, 84112, USA
| | - Iram Sifat
- Departments of Chemistry and Material Science and Engineering, University of Utah, 315 S 1400 E Rm 2020, Salt Lake City, UT, 84112, USA
- United States-Pakistan Centre for Advanced Studies in Water, Mehran University of Engineering and Technology, Jamshoro, 76090, Sindh, Pakistan
| | - Massimiliano Bestetti
- Department of Chemistry, Materials and Chemical Engineering "G. Natta", Politecnico di Milano, Piazza L. da Vinci 32, 20133, Milano, Italy
| | - Shelley D Minteer
- Departments of Chemistry and Material Science and Engineering, University of Utah, 315 S 1400 E Rm 2020, Salt Lake City, UT, 84112, USA
| |
Collapse
|
12
|
Veale L, Tweedley JR, Clarke KR, Hallett CS, Potter IC. Characteristics of the ichthyofauna of a temperate microtidal estuary with a reverse salinity gradient, including inter-decadal comparisons. J Fish Biol 2014; 85:1320-1354. [PMID: 25163825 DOI: 10.1111/jfb.12467] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2014] [Accepted: 05/31/2014] [Indexed: 06/03/2023]
Abstract
Data on the fish fauna of the Leschenault Estuary on the lower west coast of Australia were collected and used as a model to elucidate the characteristics of permanently open estuaries with a reverse salinity gradient, which undergo seasonal changes similar to many other estuaries with Mediterranean climate. Focus was placed on determining (1) the relationships of the number of species, density, life cycle category and species composition of fishes with region (within estuary), season and year and salinity, (2) whether species are partitioned along the lengths of such systems and (3) the extent and significance of any inter-decadal changes in species composition. The analyses and interpretation involved using multi-factorial permutational multivariate analysis of variance (PERMANOVA) and analysis of similarity (ANOSIM) designs, and three new or recently published visualization tools, i.e. modified non-metric multidimensional scaling (nMDS) plots, coherent species curves and segmented bubble plots. The base, lower, upper and apex regions of the Leschenault Estuary, along which the salinity increased in each season except in winter when most rainfall occurs, were sampled seasonally for the 2 years between winter 2008 and autumn 2010. Estuarine residents contributed twice as many individuals, but less than half the number of species as marine taxa. While the numbers of marine species and estuarine residents declined between the base or lower and apex regions, the individuals of marine species dominated the catches in the base region and estuarine residents in the other three regions. Ichthyofaunal composition in each region underwent conspicuous annual cyclical changes, due to time-staggered differences in recruitment among species, and changed sequentially along the estuary, both paralleling salinity trends. Different groups of species characterized the fauna in the different regions and seasons, thereby partitioning resources among species. The ichthyofauna of the apex region, in which salinities reached 54 and temperatures 36° C, recorded the highest maximum density and, in terms of abundance, was dominated (90%) by three atherinid species, emphasizing the ability of this family to tolerate extreme conditions. Comparisons between the data for 2008-2010 and 1994 demonstrate that the spotted hardyhead Craterocephalus mugiloides and the common hardyhead Atherinomorus vaigiensis had colonized and become abundant in the Leschenault Estuary in the intervening period. This represents a southwards extension of the distribution of these essentially tropical species during a period of increasing coastal water temperatures as a result of climate change. The abundance of weed-associated species, e.g. the western gobbleguts Ostorhinchus rueppellii and the soldier Gymnapistes marmoratus, increased, whereas that of the longfinned goby Favonigobius lateralis decreased, probably reflecting increases in eutrophication and siltation, respectively.
Collapse
Affiliation(s)
- L Veale
- Centre for Fish and Fisheries Research, Murdoch University, South Street, Murdoch, WA 6150, Australia
| | | | | | | | | |
Collapse
|
13
|
Cooper CA, Regan MD, Brauner CJ, De Bastos ESR, Wilson RW. Osmoregulatory bicarbonate secretion exploits H(+)-sensitive haemoglobins to autoregulate intestinal O2 delivery in euryhaline teleosts. J Comp Physiol B 2014; 184:865-76. [PMID: 25160040 PMCID: PMC4171588 DOI: 10.1007/s00360-014-0844-x] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2014] [Revised: 04/01/2014] [Accepted: 04/11/2014] [Indexed: 11/30/2022]
Abstract
Marine teleost fish secrete bicarbonate (HCO3 (-)) into the intestine to aid osmoregulation and limit Ca(2+) uptake by carbonate precipitation. Intestinal HCO3 (-) secretion is associated with an equimolar transport of protons (H(+)) into the blood, both being proportional to environmental salinity. We hypothesized that the H(+)-sensitive haemoglobin (Hb) system of seawater teleosts could be exploited via the Bohr and/or Root effects (reduced Hb-O2 affinity and/or capacity with decreasing pH) to improve O2 delivery to intestinal cells during high metabolic demand associated with osmoregulation. To test this, we characterized H(+) equilibria and gas exchange properties of European flounder (Platichthys flesus) haemoglobin and constructed a model incorporating these values, intestinal blood flow rates and arterial-venous acidification at three different environmental salinities (33, 60 and 90). The model suggested red blood cell pH (pHi) during passage through intestinal capillaries could be reduced by 0.14-0.33 units (depending on external salinity) which is sufficient to activate the Bohr effect (Bohr coefficient of -0.63), and perhaps even the Root effect, and enhance tissue O2 delivery by up to 42 % without changing blood flow. In vivo measurements of intestinal venous blood pH were not possible in flounder but were in seawater-acclimated rainbow trout which confirmed a blood acidification of no less than 0.2 units (equivalent to -0.12 for pHi). When using trout-specific values for the model variables, predicted values were consistent with measured in vivo values, further supporting the model. Thus this system is an elegant example of autoregulation: as the need for costly osmoregulatory processes (including HCO3 (-) secretion) increases at higher environmental salinity, so does the enhancement of O2 delivery to the intestine via a localized acidosis and the Bohr (and possibly Root) effect.
Collapse
Affiliation(s)
- C. A. Cooper
- Department of Chemistry, Wilfrid Laurier University, 75 University Ave. West, Waterloo, ON N2L 3C5 Canada
| | - M. D. Regan
- Department of Zoology, University of British Columbia, 6270 University Boulevard, Vancouver, BC Canada
| | - C. J. Brauner
- Department of Zoology, University of British Columbia, 6270 University Boulevard, Vancouver, BC Canada
| | - E. S. R. De Bastos
- Biosciences, College of Life and Environmental Sciences, University of Exeter, Geoffrey Pope Building, Exeter, Devon EX4 4QD UK
| | - R. W. Wilson
- Biosciences, College of Life and Environmental Sciences, University of Exeter, Geoffrey Pope Building, Exeter, Devon EX4 4QD UK
| |
Collapse
|
14
|
Perissinotto R, Miranda NAF, Raw JL, Peer N. Biodiversity census of Lake St Lucia, iSimangaliso Wetland Park (South Africa): Gastropod molluscs. Zookeys 2014:1-43. [PMID: 25317060 PMCID: PMC4196252 DOI: 10.3897/zookeys.440.7803] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2014] [Accepted: 08/14/2014] [Indexed: 11/25/2022] Open
Abstract
The recent dry phase experienced by the St Lucia estuarine system has led to unprecedented desiccation and hypersaline conditions through most of its surface area. This has changed only recently, at the end of 2011, with the onset of a new wet phase that has already caused a major shift to oligo- and mesohaline conditions. The estuary mouth, however, remains closed to the ocean, making the weak connection recently established between the St Lucia and the Mfolozi estuaries the only conveyance for marine recruitment. As a result, only 10 indigenous and two alien aquatic gastropod species are currently found living in the St Lucia estuarine lake. This is out of a total of 37 species recorded within the system since the earliest survey undertaken in 1924, half of which have not been reported in the literature before. The tick shell, Nassarius kraussianus, which was consistently found in large abundance prior to the recent dry phase, appears to have temporarily disappeared from the system, probably as a result of the extinction of Zostera marine grasses inside the lake. Population explosions of the bubble shell Haminoea natalensis, with its distinct egg masses, were recorded seasonally until 2009, but the species has subsequently not been observed again. A molecular DNA analysis of the various populations previously reported as belonging to the same assimineid species, variably referred to as Assiminea capensis, A. ovata, or A. bifasciata, has revealed that the St Lucia assemblage actually comprises two very distinct taxa, A. cf. capensis and a species provisionally referred to here as “A.” aff. capensis or simply Assimineidae sp. In the mangroves, the climbing whelk Cerithidea decollata is still found in numbers, while ellobiids such as Cassidula labrella, Melampus semiaratus and M. parvulus are present in low abundances and all previously recorded littorinids have disappeared. A number of alien freshwater species have colonized areas of the system that have remained under low salinity. These include the invasive thiarid Tarebia granifera, which can be found in concentrations exceeding 5000 ind.m-2, the lymnaeid Pseudosuccinea columella and the physid Aplexa marmorata.
Collapse
Affiliation(s)
- Renzo Perissinotto
- DST/NRF Research Chair in Shallow Water Ecosystems, Nelson Mandela Metropolitan University, P.O. Box 77000, Port Elizabeth 6031 South Africa ; School of Life Sciences, University of KwaZulu-Natal, P Bag X54001, Durban 4001 South Africa
| | - Nelson A F Miranda
- DST/NRF Research Chair in Shallow Water Ecosystems, Nelson Mandela Metropolitan University, P.O. Box 77000, Port Elizabeth 6031 South Africa
| | - Jacqueline L Raw
- DST/NRF Research Chair in Shallow Water Ecosystems, Nelson Mandela Metropolitan University, P.O. Box 77000, Port Elizabeth 6031 South Africa
| | - Nasreen Peer
- DST/NRF Research Chair in Shallow Water Ecosystems, Nelson Mandela Metropolitan University, P.O. Box 77000, Port Elizabeth 6031 South Africa
| |
Collapse
|
15
|
Lavado R, Rimoldi JM, Schlenk D. Mechanisms of fenthion activation in rainbow trout (Oncorhynchus mykiss) acclimated to hypersaline environments. Toxicol Appl Pharmacol 2009; 235:143-52. [PMID: 19111563 PMCID: PMC2858921 DOI: 10.1016/j.taap.2008.11.017] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2008] [Revised: 11/06/2008] [Accepted: 11/19/2008] [Indexed: 11/22/2022]
Abstract
Previous studies in rainbow trout have shown that acclimation to hypersaline environments enhances the toxicity to thioether organophosphate and carbamate pesticides. In order to determine the role of biotransformation in this process, the metabolism of the thioether organophosphate biocide, fenthion was evaluated in microsomes from gills, liver and olfactory tissues in rainbow trout (Oncorhynchus mykiss) acclimated to freshwater and 17 per thousand salinity. Hypersalinity acclimation increased the formation of fenoxon and fenoxon sulfoxide from fenthion in liver microsomes from rainbow trout, but not in gills or in olfactory tissues. NADPH-dependent and independent hydrolysis was observed in all tissues, but only NADPH-dependent fenthion cleavage was differentially modulated by hypersalinity in liver (inhibited) and gills (induced). Enantiomers of fenthion sulfoxide (65% and 35% R- and S-fenthion sulfoxide, respectively) were formed in liver and gills. The predominant pathway of fenthion activation in freshwater appears to be initiated through initial formation of fenoxon which may be subsequently converted to the most toxic metabolite fenoxon R-sulfoxide. However, in hypersaline conditions both fenoxon and fenthion sulfoxide formation may precede fenoxon sulfoxide formation. Stereochemical evaluation of sulfoxide formation, cytochrome P450 inhibition studies with ketoconazole and immunoblots indicated that CYP3A27 was primarily involved in the enhancement of fenthion activation in hypersaline-acclimated fish with limited contribution of FMO to initial sulfoxidation.
Collapse
Affiliation(s)
- Ramon Lavado
- Department of Environmental Chemistry, University of California Riverside, 900 University Ave., Riverside, CA 92521, USA.
| | | | | |
Collapse
|
16
|
Abstract
BACKGROUND AND AIMS In Richards Bay, South Africa, Avicennia marina frequently exhibits a distinct productivity gradient, with tree height decreasing markedly from 6-10 m in the fringe zone to <1.5 m in the dwarf zone which is 120 m inland at a slightly higher elevation. In this investigation, soil physico-chemical conditions between fringe and dwarf A. marina were compared and the constraints imposed by any differences on mangrove ecophysiology and productivity determined. METHODS Soil and plant samples were analysed for inorganic ions using spectrophotometry. Gas exchange measurements were taken with an infrared gas analyser and chlorophyll fluorescence with a fluorometer. Xylem psi was determined with a pressure chamber and chlorophyll content with a chlorophyll absorbance meter. RESULTS In the dwarf site, soil salinity, total cations, electrical conductivity and soil concentrations of Na(+), K(+), Ca(2+), Mg(2+), Zn(2+), Mn(2+) and Cu(2+) were significantly higher than those in the fringe zone. Soil water potential and the concentration of soil P, however, were significantly lower in the dwarf site. In the leaves, Na(+) was the predominant ion and its concentration was 24 % higher in dwarf than fringe mangroves. Leaf concentrations of K(+), Ca(2+), Mg(2+), Mn(2+) and P, however, were significantly lower in dwarf mangroves. Photosynthetic performance, measured by gas exchange and chlorophyll fluorescence, was significantly reduced in the dwarf plants. CONCLUSIONS The results suggest that hydro-edaphic factors contribute to high soil salinities, low water potentials, water stress and ion imbalance within tissues including P deficiency, which in interaction, contribute to dwarfing in Avicennia marina.
Collapse
Affiliation(s)
- G Naidoo
- School of Biological and Conservation Sciences, University of KwaZulu-Natal, P/B X 54001, Durban, 4000, South Africa.
| |
Collapse
|