1
|
Knöckel J, Dundas K, Yang ASP, Galaway F, Metcalf T, Gemert GJV, Sauerwein RW, Rayner JC, Billker O, Wright GJ. Systematic Identification of Plasmodium Falciparum Sporozoite Membrane Protein Interactions Reveals an Essential Role for the p24 Complex in Host Infection. Mol Cell Proteomics 2021; 20:100038. [PMID: 33515807 PMCID: PMC7950211 DOI: 10.1074/mcp.ra120.002432] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Accepted: 12/22/2020] [Indexed: 12/14/2022] Open
Abstract
Sporozoites are a motile form of malaria-causing Plasmodium falciparum parasites that migrate from the site of transmission in the dermis through the bloodstream to invade hepatocytes. Sporozoites interact with many cells within the host, but the molecular identity of these interactions and their role in the pathology of malaria is poorly understood. Parasite proteins that are secreted and embedded within membranes are known to be important for these interactions, but our understanding of how they interact with each other to form functional complexes is largely unknown. Here, we compile a library of recombinant proteins representing the repertoire of cell surface and secreted proteins from the P. falciparum sporozoite and use an assay designed to detect extracellular interactions to systematically identify complexes. We identify three protein complexes including an interaction between two components of the p24 complex that is involved in the trafficking of glycosylphosphatidylinositol-anchored proteins through the secretory pathway. Plasmodium parasites lacking either gene are strongly inhibited in the establishment of liver-stage infections. These findings reveal an important role for the p24 complex in malaria pathogenesis and show that the library of recombinant proteins represents a valuable resource to investigate P. falciparum sporozoite biology.
Collapse
Key Words
- avexis, avidity-based extracellular interaction screen
- csp, circumsporozoite protein
- gpi, glycosylphosphatidylinositol
- hbs, hepes-buffered saline
- hek, human embryonic kidney
- ivis, in vivo imaging system
- msp, merozoite surface protein
- piesp15, parasite-infected erythrocyte surface protein 15
- spr, surface plasmon resonance
- trap, thrombospondin-related anonymous protein
Collapse
Affiliation(s)
- Julia Knöckel
- Cell Surface Signalling Laboratory, Wellcome Sanger Institute, Cambridge, United Kingdom; Malaria Programme, Wellcome Sanger Institute, Cambridge, United Kingdom
| | - Kirsten Dundas
- Cell Surface Signalling Laboratory, Wellcome Sanger Institute, Cambridge, United Kingdom; Malaria Programme, Wellcome Sanger Institute, Cambridge, United Kingdom
| | - Annie S P Yang
- Radboudumc Center for Infectious Diseases, Department of Medical Microbiology, Radboud University Medical Center, Nijmegen, The Netherlands
| | - Francis Galaway
- Cell Surface Signalling Laboratory, Wellcome Sanger Institute, Cambridge, United Kingdom; Malaria Programme, Wellcome Sanger Institute, Cambridge, United Kingdom
| | - Tom Metcalf
- Malaria Programme, Wellcome Sanger Institute, Cambridge, United Kingdom
| | - Geert-Jan van Gemert
- Radboudumc Center for Infectious Diseases, Department of Medical Microbiology, Radboud University Medical Center, Nijmegen, The Netherlands
| | - Robert W Sauerwein
- Radboudumc Center for Infectious Diseases, Department of Medical Microbiology, Radboud University Medical Center, Nijmegen, The Netherlands
| | - Julian C Rayner
- Malaria Programme, Wellcome Sanger Institute, Cambridge, United Kingdom
| | - Oliver Billker
- Malaria Programme, Wellcome Sanger Institute, Cambridge, United Kingdom; The Laboratory for Molecular Infection Medicine Sweden (MIMS) and Department of Molecular Biology, Umeå University, Umeå, Sweden
| | - Gavin J Wright
- Cell Surface Signalling Laboratory, Wellcome Sanger Institute, Cambridge, United Kingdom; Malaria Programme, Wellcome Sanger Institute, Cambridge, United Kingdom; Department of Biology, Hull York Medical School, York Biomedical Research Institute, University of York, York, United Kingdom.
| |
Collapse
|
2
|
Park JY, Kim JH, Kwon JM, Kwon HJ, Jeong HJ, Kim YM, Kim D, Lee WS, Ryu YB. Dieckol, a SARS-CoV 3CL(pro) inhibitor, isolated from the edible brown algae Ecklonia cava. Bioorg Med Chem 2013; 21:3730-7. [PMID: 23647823 PMCID: PMC7126891 DOI: 10.1016/j.bmc.2013.04.026] [Citation(s) in RCA: 99] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2013] [Revised: 04/11/2013] [Accepted: 04/12/2013] [Indexed: 12/11/2022]
Abstract
SARS-CoV 3CL(pro) plays an important role in viral replication. In this study, we performed a biological evaluation on nine phlorotannins isolated from the edible brown algae Ecklonia cava. The nine isolated phlorotannins (1-9), except phloroglucinol (1), possessed SARS-CoV 3CL(pro) inhibitory activities in a dose-dependently and competitive manner. Of these phlorotannins (1-9), two eckol groups with a diphenyl ether linked dieckol (8) showed the most potent SARS-CoV 3CL(pro) trans/cis-cleavage inhibitory effects (IC(50)s = 2.7 and 68.1 μM, respectively). This is the first report of a (8) phlorotannin chemotype significantly blocking the cleavage of SARS-CoV 3CL(pro) in a cell-based assay with no toxicity. Furthermore, dieckol (8) exhibited a high association rate in the SPR sensorgram and formed extremely strong hydrogen bonds to the catalytic dyad (Cys145 and His41) of the SARS-CoV 3CL(pro).
Collapse
Affiliation(s)
- Ji-Young Park
- Infection Control Research Center, Korea Research Institute of Bioscience and Biotechnology, Jeongeup 580-185, Republic of Korea
| | | | | | | | | | | | | | | | | |
Collapse
|
3
|
Olasagasti F, Ruiz de Gordoa JC. Miniaturized technology for protein and nucleic acid point-of-care testing. Transl Res 2012; 160:332-45. [PMID: 22683416 PMCID: PMC7104926 DOI: 10.1016/j.trsl.2012.02.012] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/29/2011] [Revised: 02/22/2012] [Accepted: 02/24/2012] [Indexed: 01/26/2023]
Abstract
The field of point-of-care (POC) testing technology is developing quickly and producing instruments that are increasingly reliable, while their size is being gradually reduced. Proteins are a common target for POC analyses and the detection of protein markers typically involves immunoassays aimed at detecting different groups of proteins such as tumor markers, inflammation proteins, and cardiac markers; but other techniques can also be used to analyze plasma proteins. In the case of nucleic acids, hybridization and amplification strategies can be used to record electromagnetic or electric signals. These techniques allow for the identification of specific viral or bacterial infections as well as specific cancers. In this review, we consider some of the latest advances in the analysis of specific nucleic acid and protein biomarkers, taking into account their trend toward miniaturization and paying special attention to the technology that can be implemented in future applications, such as lab-on-a-chip instruments.
Collapse
Key Words
- poc, point-of-care
- lfi, lateral flow immunochromatography
- psa, prostate-specific antigen
- hcg, human chorionic gonadotropin
- tsh, thyroid-stimulating hormone
- seb, staphylococcal enterotixin b
- fret, förster resonance energy transfer
- mmp, matrix metalloproteinase 9
- bnp, b-type natriuretic peptide
- crp, c-reactive protein
- pdms, polydimethylsiloxane
- ig, immunoglobulin
- hb a1c, hemoglobin a1c
- ag, antigen
- ab, antibody
- tnfα, tumor necrosis factor α
- pct, procalcitonin
- il, interleukin
- pcr, polymerase chain reaction
- ca, cancer antigen
- cea, carcinoembryonic antigen
- nmp, nuclear matrix protein
- s100β, s100 calcium binding protein beta
- elisa, enzyme-linked immunosorbent assay
- vegf, vascular endothelial growth factor
- pmma, methyl methacrylate
- ctni, cardiac troponin i
- egf, epidermal growth factor
- ip, interferon-inducible
- mcp, monocyte chemoattractant protein
- timp-1, tissue inhibitor of matrix metalloproteinase-1
- rantes, regulated upon activation, normal t cell expressed and secreted
- mip-1 β, macrophage inflammatory protein-beta
- ctnt, cardiac troponin t
- hrp, horseradish peroxidase
- si-fet, silicon field-effect-transistor
- afp, alpha fetoprotein
- act, antichymotrypsin
- mia, magnetic immunoassay
- apc, allophycocyanin
- he4, human epididymis protein 4
- tmb, 3,3',5,5'-tetramethylbenzidine
- hp, hairpin
- lamp, loop-mediated isothermal amplification
- mrsa, methicillin resistant staphylococcus aureus
- fmdv, foot-and-mouth disease virus
- mμlamp, multiplex microfluidic lamp
- had, helicase-dependent amplification
- nasba, nucleic acid sequence based amplification
- lfm, lateral flow chromatography microarrays
- hsp, heat shock proteins
- spr, surface plasmon resonance
- mems, micro-electro-mechanical systems
- mimed, magnetic integrated microfluidic electrochemical detectors
Collapse
Affiliation(s)
- Felix Olasagasti
- Department of Biochemistry and Molecular Biology, Farmazia Fakultatea/Facultad de Farmacia, UPV-EHU, Gasteiz, Spain.
| | | |
Collapse
|
4
|
Teles FSRR. Biosensors and rapid diagnostic tests on the frontier between analytical and clinical chemistry for biomolecular diagnosis of dengue disease: a review. Anal Chim Acta 2011; 687:28-42. [PMID: 21241843 PMCID: PMC7094386 DOI: 10.1016/j.aca.2010.12.011] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2010] [Revised: 11/09/2010] [Accepted: 12/07/2010] [Indexed: 11/26/2022]
Abstract
The past decades have witnessed enormous technological improvements towards the development of simple, cost-effective and accurate rapid diagnostic tests for detection and identification of infectious pathogens. Among them is dengue virus, the etiologic agent of the mosquito-borne dengue disease, one of the most important emerging infectious pathologies of nowadays. Dengue fever may cause potentially deadly hemorrhagic symptoms and is endemic in the tropical and sub-tropical world, being also a serious threat to temperate countries in the developed world. Effective diagnostics for dengue should be able to discriminate among the four antigenically related dengue serotypes and fulfill the requirements for successful decentralized (point-of-care) testing in the harsh environmental conditions found in most tropical regions. The accurate identification of circulating serotypes is crucial for the successful implementation of vector control programs based on reliable epidemiological predictions. This paper briefly summarizes the limitations of the main conventional techniques for biomolecular diagnosis of dengue disease and critically reviews some of the most relevant biosensors and rapid diagnostic tests developed, implemented and reported so far for point-of-care testing of dengue infections. The invaluable contributions of microfluidics and nanotechnology encompass the whole paper, while evaluation concerns of rapid diagnostic tests and foreseen technological improvements in this field are also overviewed for the diagnosis of dengue and other infectious and tropical diseases as well.
Collapse
Key Words
- cdc, centers for disease control
- denv1–4, dengue virus serotypes (1–4)
- ssrna, single-stranded ribonucleic acid
- orf, open-reading frame
- ns1, non-structural 1
- dhf, dengue hemorrhagic fever
- dss, dengue shock syndrome
- who, world health organization
- hi, hemagglutination-inhibition
- mac-eia, monoclonal antibody capture-enzyme linked immunosorbent assay
- rt-pcr, reverse transcription-polymerase chain reaction
- 3′-nr, 3′noncoding region
- rna, ribonucleic acid
- igg, immunoglobulin g
- igm, immunoglobulin m
- dna, deoxyribonucleic acid
- qcm, quartz-crystal microbalance
- mip, molecularly imprinted polymer
- gnp, gold nanoparticle
- sam, self-assembled monolayer
- bsa, bovine serum albumin
- spr, surface plasmon resonance
- nasba, nucleic acid sequence-based amplification
- s/n, signal-to-noise ratio
- cmos, complementary metal oxide semiconductor
- fia, flow-injection analysis
- fccs, fluorescence cross-correlation spectroscopy
- fcs, fluorescence correlation spectroscopy
- eis, electrochemical impedance spectroscopy
- bst, barium strontium titanate
- fet, field-effect transistor
- pna, peptide nucleic-acid
- lod, limit of detection
- cdna, complementary dna
- tdr, special programme for research and training in tropical diseases
- undp, united nations development programme
- pdvi, pediatric dengue vaccine initiative
- stard, standards for reporting of diagnostic accuracy
- fiocruz, fundação oswaldo cruz
- dpp®, dual-path platform
- blm, bilayer lipid membrane
- qd, quantum dot
- cnt, carbon nanotube
- ms, mass spectrometry
- sars, severe acute respiratory syndrome
- biosensor
- dengue
- diagnosis
- evaluation
- rapid test
- tropical disease
Collapse
Affiliation(s)
- Fernando Sérgio Rodrigues Ribeiro Teles
- Centre for Malaria and Tropical Diseases, Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa, Rua da Junqueira 100, 1349-008 Lisboa, Portugal.
| |
Collapse
|
5
|
Abstract
New methods to identify trace amount of infectious pathogens rapidly, accurately and with high sensitivity are in constant demand to prevent epidemics and loss of lives. Early detection of these pathogens to prevent, treat and contain the spread of infections is crucial. Therefore, there is a need and urgency for sensitive, specific, accurate, easy-to-use diagnostic tests. Versatile biofunctionalized engineered nanomaterials are proving to be promising in meeting these needs in diagnosing the pathogens in food, blood and clinical samples. The unique optical and magnetic properties of the nanoscale materials have been put to use for the diagnostics. In this review, we focus on the developments of the fluorescent nanoparticles, metallic nanostructures and superparamagnetic nanoparticles for bioimaging and detection of infectious microorganisms. The various nanodiagnostic assays developed to image, detect and capture infectious virus and bacteria in solutions, food or biological samples in vitro and in vivo are presented and their relevance to developing countries is discussed.
Collapse
Key Words
- who, world health organization
- elisa, enzyme linked immuno sorbent assay
- pcr, polymerase chain reaction
- nps, nanoparticles
- qdots, quantum dots
- rsv, respiratory syncytial virus
- fitc, fluorescein isothiocyanate
- zn-dpa, zn (ii)-dipicolylamine
- hbv, hepatitis b virus
- hcv, hepatitis c virus
- qdot-b, qdot-barcodes
- hiv, human immunodeficiency virus
- fsnps, fluorescent silica nanoparticles
- fret, förster resonance energy transfer
- fam-se, (5-carboxy-fluorescein succinimidyl ester)
- rox-se, (6-carboxy-x-rhodamine, succinimidyl ester)
- r6g-se, (5-carboxyrhodamine 6g, succinimidyl ester)
- tmr-se, (carboxytetramethylrhodamine, succinimidyl ester)
- osbpy, tris (2, 2′bipyridyl) osmium bis (hexafluorophosphate)
- rubpy, tris(bipyridine) ruthenium (ii) dichloride
- fnp-iifm, fluorescent nanoparticle-based indirect immunofluorescence microscopy
- eu iii, europium
- cadpa, calcium dipicolinate
- lod, limit of detection
- sec1, staphylococcal enterotoxin c1
- ct, cholera toxin
- pa, anthrax protective agent
- ccmv, cow pea chlorotic mottle virus
- mri, magnetic resonance imaging
- spa, protein a
- gd-dota, gadolinium-1,4,7,10-tetraazacyclododecane tetraacetic acid
- icp-ms, inductively coupled plasma mass spectrometry
- spr, surface plasmon resonance
- au np, gold nanoparticle
- hsv-2, herpes simplex virus type 2
- hsv-1, herpes simplex virus type 1
- rls, resonance light scattering
- ss, single stranded
- hrs, hyper-rayleigh scattering
- ds, double stranded
- tem, transmission electron microscopy
- h. pyroli, helicobacter pyroli
- sers, surface enhanced raman scattering
- smcc, succinimidyl-4-(n-maleimidomethyl)cyclohexane-1-carboxylate
- bg, bacillus globigii
- ova, ovalbumin
- cfu, colony forming unit
- atp, adenosine triphosphate
- ir, infra red
- squid, superconducting quantum interference device
- mnp, magnetic nanoparticles
- maldi-ms, matrix-assisted laser desorption/ionization mass spectrometry
- poa, adopted pigeon ovalbumin
- mgnp, magnetic glycol nanoparticles
- spio, superparamagnetic iron oxide
- mrs, magnetic relaxation sensors
- nmr, nuclear magnetic resonance
- fluorescent nanoparticles
- multiplexing
- viral imaging
- bacterial detection
- surface plasmon resonance
- colorimetric assay
- magnetic nanosensors
- immunomagnetic separation
Collapse
Affiliation(s)
- Padmavathy Tallury
- NanoScience Technology Center, University of Central Florida, 12424 Research Parkway, Suite 400, Orlando, FL 32826, USA
| | - Astha Malhotra
- NanoScience Technology Center, University of Central Florida, 12424 Research Parkway, Suite 400, Orlando, FL 32826, USA
| | - Logan M Byrne
- NanoScience Technology Center, University of Central Florida, 12424 Research Parkway, Suite 400, Orlando, FL 32826, USA
| | - Swadeshmukul Santra
- NanoScience Technology Center, University of Central Florida, 12424 Research Parkway, Suite 400, Orlando, FL 32826, USA
- Department of Chemistry, University of Central Florida, 12424 Research Parkway, Suite 400, Orlando, FL 32826, USA
- Biomolecular Science Center, University of Central Florida, 12424 Research Parkway, Suite 400, Orlando, FL 32826, USA
| |
Collapse
|
6
|
Kang H, Lee S, Park S, Yu J, Kim Y, Jung G. Phosphorylation of hepatitis B virus Cp at Ser87 facilitates core assembly. Biochem J 2006; 398:311-7. [PMID: 16740137 PMCID: PMC1550306 DOI: 10.1042/bj20060347] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2006] [Revised: 05/31/2006] [Accepted: 06/02/2006] [Indexed: 01/20/2023]
Abstract
Protein-protein interactions can be regulated by protein modifications such as phosphorylation. Some of the phosphorylation sites (Ser155, Ser162 and Ser170) of HBV (hepatitis B virus) Cp have been discovered and these sites are implicated in the regulation of viral genome encapsidation, capsid localization and nucleocapsid maturation. In the present report, the dimeric form of HBV Cp was phosphorylated by PKA (protein kinase A), but not by protein kinase C in vitro, and the phosphorylation of dimeric Cp facilitated HBV core assembly. Matrix-assisted laser-desorption ionization-time-of-flight analysis revealed that the HBV Cp was phosphorylated at Ser87 by PKA. This was further confirmed using a mutant HBV Cp with S87G mutation. The S87G mutation inhibited the phosphorylation and, as a result, the in vitro HBV core assembly was not facilitated by PKA. In addition, when either pCMV/FLAG-Core(WT) or pCMV/FLAG-Core(S87G) was transfected into HepG2 cells, few mutant Cps (S87G) assembled into capsids compared with the wild-type (WT) Cps, although the same level of total Cps was expressed in both cases. In conclusion, PKA facilitates HBV core assembly through phosphorylation of the HBV Cp at Ser87.
Collapse
Key Words
- core protein (cp)
- core assembly
- hepatitis b virus (hbv)
- phosphorylation
- protein kinase a (pka)
- cp, core protein
- fc, flow cell
- hbv, hepatitis b virus
- maldi–tof, matrix-assisted laser-desorption ionization–time-of-flight
- orf, open reading frame
- pka, protein kinase a
- pkc, protein kinase c
- pgrna, pregenomic rna
- ru, response unit
- spr, surface plasmon resonance
- srpk1, serine/arginine protein-specific kinase 1
- tem, transmission electron microscopy
- wt, wild-type
- wt pka, pka-treated wild-type
Collapse
Affiliation(s)
- Hee Yong Kang
- *School of Biological Sciences, Seoul National University, Shillim-dong, Seoul 151-742, South Korea
| | - Seungkeun Lee
- *School of Biological Sciences, Seoul National University, Shillim-dong, Seoul 151-742, South Korea
| | - Sung Gyoo Park
- *School of Biological Sciences, Seoul National University, Shillim-dong, Seoul 151-742, South Korea
- †Institute of Microbiology, Seoul National University, Shillim-dong, Seoul 151-742, South Korea
| | - Jaehoon Yu
- ‡Department of Chemistry Education, Seoul National University, Shillim-dong, Seoul 151-742, South Korea
| | - Youngsoo Kim
- §Molecular Genomic Medicine, College of Medicine, Seoul National University, Yongon-dong, Seoul 110-799, South Korea
- ∥Cancer Research Institute, College of Medicine, Seoul National University, Yongon-dong, Seoul 110-799, South Korea
| | - Guhung Jung
- *School of Biological Sciences, Seoul National University, Shillim-dong, Seoul 151-742, South Korea
| |
Collapse
|
7
|
Beattie J, Allan GJ, Lochrie JD, Flint DJ. Insulin-like growth factor-binding protein-5 (IGFBP-5): a critical member of the IGF axis. Biochem J 2006; 395:1-19. [PMID: 16526944 PMCID: PMC1409685 DOI: 10.1042/bj20060086] [Citation(s) in RCA: 159] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2006] [Accepted: 01/30/2006] [Indexed: 11/17/2022]
Abstract
The six members of the insulin-like growth factor-binding protein family (IGFBP-1-6) are important components of the IGF (insulin-like growth factor) axis. In this capacity, they serve to regulate the activity of both IGF-I and -II polypeptide growth factors. The IGFBPs are able to enhance or inhibit the activity of IGFs in a cell- and tissue-specific manner. One of these proteins, IGFBP-5, also has an important role in controlling cell survival, differentiation and apoptosis. In this review, we report on the structural and functional features of the protein which are important for these effects. We also examine the regulation of IGFBP-5 expression and comment on its potential role in tumour biology, with special reference to work with breast cancer cells.
Collapse
Key Words
- extracellular matrix (ecm)
- glycosaminoglycan
- insulin-like growth factor-i (igf-i)
- insulin-like growth factor-binding protein 5 (igfbp-5)
- mammary gland
- proteolysis
- adam, adisintegrin and metalloprotease
- ap-2, activator protein 2
- cat, chloramphenicol acetyltransferase
- cbp-4, c-terminus of insulin-like growth factor-binding protein 4 (residues 151–232)
- c/ebp, ccaat/enhancer-binding protein
- ecm, extracellular matrix
- er, oestrogen receptor
- erk1/2, extracellular-signal-regulated protein kinase 1/2
- fhl-2, four-and-a-half lim domain 2
- gag, glycosaminoglycan
- gh, growth hormone
- igf, insulin-like growth factor
- igfbp, igf-binding protein
- igf-ir, igf-i receptor
- igf-iir, igf-ii receptor
- ir, insulin receptor
- irs, ir substrate
- mapk, mitogen-activated protein kinase
- nbp-4, n-terminus of igfbp-4 (residues 3–82)
- oe2, oestradiol
- op-1, osteogenic protein-1
- opn, osteopontin
- pai-1, plasminogen activator inhibitor-1
- papp, pregnancy-associated plasma protease
- pge2, prostaglandin e2
- psmc, porcine smooth-muscle cell
- ra, retinoic acid
- rassf1c, isoform c of the ras association family 1 protein group
- rt, reverse transcription
- spr, surface plasmon resonance
- tpa, tissue plasminogen activator
- tsp-1, thrombospondin-1
- vn, vitronectin
Collapse
Affiliation(s)
- James Beattie
- Hannah Research Institute, Ayr KA6 5HL, Scotland, UK.
| | | | | | | |
Collapse
|
8
|
Zelezetsky I, Pacor S, Pag U, Papo N, Shai Y, Sahl HG, Tossi A. Controlled alteration of the shape and conformational stability of alpha-helical cell-lytic peptides: effect on mode of action and cell specificity. Biochem J 2005; 390:177-88. [PMID: 15836439 PMCID: PMC1184573 DOI: 10.1042/bj20042138] [Citation(s) in RCA: 90] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2004] [Revised: 04/05/2005] [Accepted: 04/19/2005] [Indexed: 11/17/2022]
Abstract
A novel method, based on the rational and systematic modulation of macroscopic structural characteristics on a template originating from a large number of natural, cell-lytic, amphipathic alpha-helical peptides, was used to probe how the depths and shapes of hydrophobic and polar faces and the conformational stability affect antimicrobial activity and selectivity with respect to eukaryotic cells. A plausible mode of action explaining the peptides' behaviour in model membranes, bacteria and host cells is proposed. Cytotoxic activity, in general, correlated strongly with the hydrophobic sector depth, and required a majority of aliphatic residue side chains having more than two carbon atoms. It also correlated significantly with the size of polar sector residues, which determines the penetration depth of the peptide via the so-called snorkel effect. Both an oblique gradient of long to short aliphatic residues along the hydrophobic face and a stabilized helical structure increased activity against host cells but not against bacteria, as revealed by haemolysis, flow cytofluorimetric studies on lymphocytes and surface plasmon resonance studies with model phosphatidylcholine/cholesterol membranes. The mode of interaction changes radically for a peptide with a stable, preformed helical conformation compared with others that form a structure only on membrane binding. The close correlation between effects observed in biological and model systems suggests that the 'carpet model' correctly represents the type of peptides that are bacteria-selective, whereas the behaviour of those that lyse host cells is more complex.
Collapse
Key Words
- amphipathic helix
- antimicrobial peptide
- cell specificity
- cell-lytic peptide
- mode of action
- surface plasmon resonance
- abu, 2-aminobutyric acid
- acp, aminocylcopentanecarboxylic acid
- aib, 2-aminoisobutyric acid
- amp, antimicrobial peptide
- dab, 2,4-diaminobutyric acid
- dap, 2,3-diaminopropionic acid
- deg, diethylglycine
- dpg, dipropylglycine
- fs, forward scattering
- hse, homoserine
- mh, mueller–hinton
- mic, minimum inhibitory concentration
- nle, norleucine
- nva, norvaline
- onpg, o-nitrophenyl β-d-galactopyranoside
- pc, phosphatidylcholine
- pe, phosphatidylethanolamine
- pg, phosphatidylglycerol
- pi, propidium iodide
- sem, scanning electron microscopy
- spr, surface plasmon resonance
- ss, side scattering
- tfe, trifluoroethanol
Collapse
Affiliation(s)
- Igor Zelezetsky
- *Department of Biochemistry, Biophysics and Macromolecular Chemistry, University of Trieste, I-34127 Trieste, Italy
| | - Sabrina Pacor
- †Department of Biomedical Sciences, University of Trieste, I-34127 Trieste, Italy
| | - Ulrike Pag
- ‡Institute for Medical Microbiology and Immunology, University of Bonn, 53105 Bonn, Germany
| | - Niv Papo
- §Department of Biological Chemistry, Weizmann Institute of Science, Rehovot 76100, Israel
| | - Yechiel Shai
- §Department of Biological Chemistry, Weizmann Institute of Science, Rehovot 76100, Israel
| | - Hans-Georg Sahl
- ‡Institute for Medical Microbiology and Immunology, University of Bonn, 53105 Bonn, Germany
| | - Alessandro Tossi
- *Department of Biochemistry, Biophysics and Macromolecular Chemistry, University of Trieste, I-34127 Trieste, Italy
| |
Collapse
|
9
|
Groemping Y, Rittinger K. Activation and assembly of the NADPH oxidase: a structural perspective. Biochem J 2005; 386:401-16. [PMID: 15588255 PMCID: PMC1134858 DOI: 10.1042/bj20041835] [Citation(s) in RCA: 421] [Impact Index Per Article: 22.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2004] [Revised: 12/02/2004] [Accepted: 12/10/2004] [Indexed: 11/17/2022]
Abstract
The NADPH oxidase of professional phagocytes is a crucial component of the innate immune response due to its fundamental role in the production of reactive oxygen species that act as powerful microbicidal agents. The activity of this multi-protein enzyme is dependent on the regulated assembly of the six enzyme subunits at the membrane where oxygen is reduced to superoxide anions. In the resting state, four of the enzyme subunits are maintained in the cytosol, either through auto-inhibitory interactions or through complex formation with accessory proteins that are not part of the active enzyme complex. Multiple inputs are required to disrupt these inhibitory interactions and allow translocation to the membrane and association with the integral membrane components. Protein interaction modules are key regulators of NADPH oxidase assembly, and the protein-protein interactions mediated via these domains have been the target of numerous studies. Many models have been put forward to describe the intricate network of reversible protein interactions that regulate the activity of this enzyme, but an all-encompassing model has so far been elusive. An important step towards an understanding of the molecular basis of NADPH oxidase assembly and activity has been the recent solution of the three-dimensional structures of some of the oxidase components. We will discuss these structures in the present review and attempt to reconcile some of the conflicting models on the basis of the structural information available.
Collapse
Key Words
- nadph oxidase
- oxidase assembly
- phosphorylation
- protein–protein interaction
- reactive oxygen species
- ac, acidic cluster
- bc, basic cluster
- cgd, chronic granulomatous disease
- gap, gtpase-activating protein
- gdi, gdp-dissociation inhibitor
- gef, guanine-nucleotide-exchange factor
- gst, glutathione s-transferase
- itc, isothermal titration calorimetry
- mapk, mitogen-activated protein kinase
- pb1, phox and bem1
- pc, phox and cdc24
- phox, phagocytic oxidase
- ppii helix, polyproline type ii helix
- px, phox homology
- prr, proline-rich region
- rms, root mean square
- ros, reactive oxygen species
- sh3, src homology 3
- spr, surface plasmon resonance
- tpr, tetratricopeptide repeat
Collapse
Affiliation(s)
- Yvonne Groemping
- *Abteilung Biomolekulare Mechanismen, Max-Planck-Institut für medizinische Forschung, Heidelberg, Germany
| | - Katrin Rittinger
- †Division of Protein Structure, National Institute for Medical Research, London, U.K
| |
Collapse
|
10
|
Murwantoko, Yano M, Ueta Y, Murasaki A, Kanda H, Oka C, Kawaichi M. Binding of proteins to the PDZ domain regulates proteolytic activity of HtrA1 serine protease. Biochem J 2004; 381:895-904. [PMID: 15101818 PMCID: PMC1133901 DOI: 10.1042/bj20040435] [Citation(s) in RCA: 73] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2004] [Revised: 04/17/2004] [Accepted: 04/22/2004] [Indexed: 11/17/2022]
Abstract
HtrA1, a member of the mammalian HtrA (high temperature requirement A) serine protease family, has a highly conserved protease domain followed by a PDZ domain. Accumulating evidence has indicated that PDZ domains regulate protease activity of HtrA proteins. We searched for binding partners of the PDZ domain of mouse HtrA1 by yeast two-hybrid screening, and isolated proteins that were recognized by the HtrA1 PDZ domain through their C-terminal ends with a core consensus Phi-X-Phi-[V/L/F/A]-COOH sequence (where Phi is a hydrophobic/non-polar amino acid). C-propeptides of fibrillar collagens were most frequently isolated. Type III procollagen alpha1 C-propeptide, which was used as a model protein, was digested by HtrA1. HtrA1 cleavage of the collagen C-propeptide was enhanced by reductive denaturation of the C-propeptide and partly inhibited by removal of the C-terminal four amino acids from the C-propeptide, suggesting that the substrate recognition was facilitated by the binding of the free C-terminal ends of substrates to the PDZ domain of HtrA1. The synthetic oligopeptide (GM130Pep) that fitted the consensus recognition sequence bound to HtrA1 with a high affinity (K(d)=6.0 nM). GM130Pep stimulated HtrA1 protease activity 3- to 4-fold, but did not efficiently stimulate the activity of an HtrA1 mutant lacking the PDZ domain, supporting the notion that the PDZ domain enhances protease activity upon ligand binding. The peptide derived from Type III collagen alpha1 C-propeptide specifically stimulated protease activity of HtrA1, but did not stimulate nor significantly bind to HtrA2, suggesting that the collagen C-propeptide is a specific physiological regulator of HtrA1.
Collapse
Key Words
- c-propeptide
- collagen
- htra1
- htra2/omi
- pdz domain
- serine protease
- 3-at, 3-amino-1,2,4-triazole
- cast, caz-associated structural protein
- cdyl, chromodomain protein, y chromosome-like
- col1a1, col2a1 and col3a1
- types i, ii and iii procollagen α1 respectively
- coxva, cytochrome c oxidase subunit va
- -c-pro, -c-propeptide
- dtt, dithiothreitol
- f171d, phe171→asp
- gm130, golgi auto-antigen golgin, subfamily a,2
- htra, high temperature requirement a
- lrp9, low-density-lipoprotein-receptor-related protein 9
- ni-nta, ni2+-nitrilotriacetate
- omp, outer-membrane porin
- par6b, partitioning defective 6 homologue β
- spr, surface plasmon resonance
- ssra, small stable rna
- tgf-β, transforming growth factor-β
- thlx, triple helical region
- trx, thioredoxin, tsp, tail-specific protease
Collapse
Affiliation(s)
- Murwantoko
- Division of Gene Function in Animals, Nara Institute of Science and Technology, 891605 Takayama, Ikoma, Nara 630-0101, Japan
| | - Masato Yano
- Division of Gene Function in Animals, Nara Institute of Science and Technology, 891605 Takayama, Ikoma, Nara 630-0101, Japan
| | - Yoshifumi Ueta
- Division of Gene Function in Animals, Nara Institute of Science and Technology, 891605 Takayama, Ikoma, Nara 630-0101, Japan
| | - Ai Murasaki
- Division of Gene Function in Animals, Nara Institute of Science and Technology, 891605 Takayama, Ikoma, Nara 630-0101, Japan
| | - Hidenobu Kanda
- Division of Gene Function in Animals, Nara Institute of Science and Technology, 891605 Takayama, Ikoma, Nara 630-0101, Japan
| | - Chio Oka
- Division of Gene Function in Animals, Nara Institute of Science and Technology, 891605 Takayama, Ikoma, Nara 630-0101, Japan
| | - Masashi Kawaichi
- Division of Gene Function in Animals, Nara Institute of Science and Technology, 891605 Takayama, Ikoma, Nara 630-0101, Japan
| |
Collapse
|