Discovery and Optimization of DNA Gyrase and Topoisomerase IV Inhibitors with Potent Activity against Fluoroquinolone-Resistant Gram-Positive Bacteria

Herein, we describe the discovery and optimization of a novel series that inhibits bacterial DNA gyrase and topoisomerase IV via binding to, and stabilization of, DNA cleavage complexes. Optimization of this series led to the identification of compound 25, which has potent activity against Gram-positive bacteria, a favorable in vitro safety profile, and excellent in vivo pharmacokinetic properties. Compound 25 was found to be efficacious against fluoroquinolone-sensitive Staphylococcus aureus infection in a mouse thigh model at lower doses than moxifloxacin. An X-ray crystal structure of the ternary complex formed by topoisomerase IV from Klebsiella pneumoniae, compound 25, and cleaved DNA indicates that this compound does not engage in a water-metal ion bridge interaction and forms no direct contacts with residues in the quinolone resistance determining region (QRDR). This suggests a structural basis for the reduced impact of QRDR mutations on antibacterial activity of 25 compared to fluoroquinolones.

Topoisomerase Inhibitors Addressing Fluoroquinolone Resistance in Gram-Negative Bacteria

Since their discovery over 5 decades ago, quinolone antibiotics have found enormous success as broad spectrum agents that exert their activity through dual inhibition of bacterial DNA gyrase and topoisomerase IV. Increasing rates of resistance, driven largely by target-based mutations in the GyrA/ParC quinolone resistance determining region, have eroded the utility and threaten the future use of this vital class of antibiotics. Herein we describe the discovery and optimization of a series of 4-(aminomethyl)quinolin-2(1H)-ones, exemplified by 34, that inhibit bacterial DNA gyrase and topoisomerase IV and display potent activity against ciprofloxacin-resistant Gram-negative pathogens. X-ray crystallography reveals that 34 occupies the classical quinolone binding site in the topoisomerase IV-DNA cleavage complex but does not form significant contacts with residues in the quinolone resistance determining region.

Molecular Probes for the Determination of Subcellular Compound Exposure Profiles in Gram-Negative Bacteria

The Gram-negative cell envelope presents a formidable barrier to xenobiotics, and achieving sufficient compound exposure inside the cell is a key challenge for the discovery of new antibiotics. To provide insight on the molecular determinants governing compound exposure in Gram-negative bacteria, we developed a methodology leveraging a cyclooctyne-based bioorthogonal probe to assess compartment-specific compound exposure. This probe can be selectively localized to the periplasmic or cytoplasmic compartments of Gram-negative bacteria. Once localized, the probe is used to test azide-containing compounds for exposure within each compartment by quantifying the formation of click-reaction products by mass spectrometry. We demonstrate this approach is an accurate and sensitive method of determining compartment-specific compound exposure profiles. We then apply this technology to study the compartment-specific exposure profiles of a small panel of azide-bearing compounds with known permeability characteristics in Gram-negative bacteria, demonstrating the utility of the system and the insight it is able to provide regarding compound exposure within intact bacteria.

Endocrine patterns of the estrous cycle and pregnancy of wildebeest in the Serengeti ecosystem

Despite the importance of the western white-bearded wildebeest (Connochaetes taurinus mearnsi) to the Serengeti-Mara ecosystem, surprisingly little is known about the reproductive physiology of this keystone species. A longitudinal, non-invasive endocrine study was conducted on female wildebeest captured from the Serengeti-Mara migration and maintained for approximately 16 months in large fenced enclosures within the species' natural range. An intact bull was introduced to a female subgroup (n=5), while remaining females (n=10) were unexposed to a male. Fecal progestagen patterns reflected ovarian activity and pregnancy. In non-pregnant animals, luteal and inter-luteal baseline progestagen values differed (p<0.001) over time, thereby allowing identification of recurrent estrous cycles. The average durations of the luteal phase, estrous cycle, gestation, and post-partum anestrus were 14.3+/-0.5, 22.6+/-1.0, 240.8+/-11.7, and 104.1+/-15.6 d, respectively. Annual reproductive patterns indicated a distinctive period of ovarian activity that extended from 13 May through 3 December (203.5+/-29.9 d) with all unmated females displaying from one to 14 estrous cycles. Progestagens were higher (p <0.001) in pregnant (n=4) than non-pregnant (n=10) cows. These data (1) reveal the value of fecal hormone monitoring for establishing the first ever endocrine profiles of female wildebeest in semi-free-living conditions in their native range, and (2) indicate that the species is a seasonal breeder that is polyestrous and a spontaneous ovulator.

Synchronization of oestrous cycles in sable antelope

Techniques for manipulating the oestrous cycle of sable antelope, Hippotragus niger, were evaluated in a captive population of 24 females maintained at the Smithsonian Institution's Conservation and Research Center in Front Royal, VA, USA. A secondary objective was to demonstrate the effectiveness of fecal steroid monitoring techniques as a non-invasive method of tracking experimental manipulations. Controlled Internal Drug Releasing (CIDR) devices designed for cattle (type B, reduced in length by 5 cm to fit the sable antelope's smaller reproductive tract) were more effective than CIDR devices designed for goats (type G) at delivering progesterone into circulation, and maintained serum progesterone at levels up to 86.1+/-7.8% of normal luteal concentrations in females whose spontaneous ovarian activity had been inhibited with melengestrol acetate. Serum progesterone and fecal progestagen measurements were highly correlated (P<0.05). Synchronization treatments of prostaglandin (PG) F2alpha alone and in combination with modified CIDR-B devices (12-day insertion interval) were both effective in inducing synchronized ovulation, however the PGF2alpha/modified CIDR-B treatment resulted in more precise synchrony and a shorter latency to ovulation than did PGF2alpha alone. In a separate experiment to characterize the temporal relationship between synchronization treatment, behavioral oestrus and ovulation, onset of behavioral oestrus occurred 34.1+/-5.7 h following PGF2alpha/modified CIDR-B treatment. Mean duration of the induced oestrus was 24.9+/-4.3 h. The first detectable rise in fecal progestagens occurred 5.1+/-1.0 and 4.1+/-1.0 days following PGF2alpha/modified CIDR-B treatment in groups of females housed with and without an adult male, respectively, indicating that the presence of a male did not accelerate the onset of the induced cycle.

Spatial integration in infant sable antelope, Hippotragus niger

I studied the relationship between the timing of birth relative to other births in the social group, and the rate of spatial integration into the herd in six cohorts of semi-free-ranging infant sable antelope at the National Zoological Park's Conservation and Research Center near Front Royal, Virginia. All calves spent the initial few days of life resting in seclusion ('hiding'), and interacted with mothers and other conspecifics only during activity bouts. With time, calves became increasingly likely to rest apart from the herd with other calves in crèches, and by 6 weeks of age, calves remained with the herd throughout all resting and activity bouts. The rate of spatial integration for individual calves depended upon the calf's birth date and the availability of peers of similar age (birth clustering). Only the first few calves born in each cohort were observed in crèches, and crèche groups synchronized their entry into the herd. First-born calves remained in crèches longer and began resting with the herd later in life than calves born later in the cohort. Last-born calves typically did not form crèches, but instead rested with the herd from an early age. Other infants may serve as social cover during the time that infants form crèches and when they first begin to accompany the herd. The observed individual differences in the rate of spatial integration may represent individual adjustments in response to the varying degrees of protection offered by the spatial environment. Copyright 1998 The Association for the Study of Animal Behaviour.

Characterization of estrous cyclicity in the sable antelope (Hippotragus niger) through fecal progestagen monitoring

Fecal progesterone metabolite monitoring techniques were validated for the sable antelope and used to characterize ovarian cycle dynamics and reproductive seasonality in a captive population at the National Zoological Park's Conservation and Research Center. Hormone was homogeneously distributed within fecal samples. Longitudinal fluctuations in fecal progesterone metabolites were consistent with typical luteal phase patterns and corresponded closely with changes in serum progesterone. The lag time from an im injection of progesterone to peak excretion in feces was 16 h. The pattern of births showed a slight peak in the summer (May-July), but year-round endocrine monitoring of six nonpregnant females showed no evidence of seasonality in ovarian activity. Females exhibited 11-14 estrous cycles per year, averaging 24.2 +/- 0.9 days in length. Luteal and interluteal phases were 18.4 +/- 0.9 and 5.8 +/- 0.4 days in length, respectively. Although only a small number of hippotragine antelope species have been studied, data indicate that they exhibit considerable interspecific variability in estrous cycle length and reproductive seasonality and thus may be a useful group for further investigation of factors regulating fertility.

Female-female interactions and social stress in prairie voles

Trios of prairie voles (Microtus ochrogaster) composed of either two estrous sibling or nonsibling females and one male were monitored via time-lapse videotaping over 72 hr. Social and sexual behaviors were analyzed as a function of trio type (sibling or nonsibling) and fate (survivor or nonsurvivor) across 12-h time blocks. Within nonsibling trios, females that were able to maintain prolonged physical contact with the male within the first 3 days of trio formation later survived and successfully produced litters; females that did not maintain male contact later died of undetermined causes, presumably related to social stress. Frequencies of sexual behavior were similar in both trio types and both surviving and nonsurviving females received equivalent amounts of copulatory stimulation from the male. Sibling groups exhibited higher levels of female-female side-by-side contact; nonsibling groups exhibited greater amounts of female-initiated anogenital sniffing, and female-initiated aggression. Female-female social interactions may be determined by prior familiarity and/or relatedness and may play a dominant role in determining the social organization and mating system of this species.

The susceptibility of Werner's syndrome and other human skin fibroblasts to SV40-induced transformation and immortalization

In attempts to transform and immortalize human cell cultures, skin fibroblasts from normal donors of different ages, from patients with the premature ageing diseases Werner's syndrome (WS) and progeria (PR), and from donors with the cancer-prone diseases ataxia telangiectasia (AT), Bloom's syndrome (BS) and Fanconi's anaemia (FA), were infected with SV40 virus and their growth monitored thereafter. Lesch-Nyhan (LN) fibroblasts were also infected. SV40-infected cultures from two normal and from WS, AT and LN donors attained a spectrum of transformed properties, high mitotic activity at confluence, presence of T-antigen, anchorage independence and altered morphology. Most of these pretransformed cultures died in the crisis period. However, two cultures from the WS and LN patients survived the crisis period and have now been grown to more than 200 passages. For the LN culture the crisis period was at least 200 days. Both permanent lines retain the properties of pretransformed cells, but differ in their modal chromosome number and ability to grow in methionine-free medium. It can be concluded from these experiments that transformation by SV40 to permanent lines is a rare event in human skin fibroblasts, even when these cells were taken from patients predisposed to form cancers.

Genetic effects on the longevity of cultured human fibroblasts. III. Correlations with altered glucose-6-phosphate dehydrogenase

The level of heat-labile glucose-6-phosphate dehydrogenase (G6PD) has been measured in skin fibroblast cultures from premature ageing or DNA repair deficient genetic syndromes. The short in vitro longevity of Werner's syndrome, progeria, Cockayne's syndrome, ataxia telangiectasia, Fanconi's anaemia, and Bloom's syndrome cultures was correlated with the appearance of a significant fraction of heat-labile enzyme. Long-lived control cultures contain a low level of altered enzyme until they become senescent. The evidence that heat-labile G6PD molecules are derived from errors in synthesis, or from other causes, is critically assessed. It is shown that normal cells grown in medium containing the antibiotic, paromomycin, which is known to reduce the fidelity of ribosomal translation, produce a significant fraction of altered G6PD.

Genetic effects on the longevity of cultured human fibroblasts. IV. Enhanced growth potential of cystic fibrosis cells

The in vitro longevity of skin fibroblasts in several parallel cultures from each of 4 cystic fibrosis (CF) patients and 3 control patients was measured by serial passages. The control cultures reached 51-56 passages before growth ceased. 1 CF strain achieved an average of 69 passages and another 64 passages. Both of these longevities are significantly greater than the controls. 2 CF strains had significantly shorter longevities than the controls. The results indicate that the CF gene is expressed in cultured fibroblasts and provide further evidence that there may be more than one form of the disease.

Genetic effects on the longevity of cultured human fibroblasts. II. DNA repair deficient syndromes

The lifespan of fibroblasts from genetic syndromes with reduced DNA repair or chromosome stability has been measured. Cells from Bloom's syndrome, Cockayne's syndrome, Fanconi's anaemia and 2 out of 3 cases of ataxia telangiectasia had a significantly reduced growth potential in comparison to controls. In each case the longevity of several parallel populations was measured and the greatest variability in lifespan was observed with Cockayne's syndrome cells. The fibroblasts from 1 ataxia telangiectasia patient and a Friedreich's ataxia patient grew to the passage levels seen in control cultures. The results suggest that repair processes are necessary for cells to achieve their maximum in vitro lifespan, and support the error theory rather than the programme theory of ageing.

Genetic effects on the longevity of cultured human fibroblasts. I. Werner's syndrome

Fibroblast cultures were established from skin biopsies from 4 male Werner's syndrome patients, aged 45-50. Several subcultures were obtained from each primary outgrowth and these were passaged to the end of their in vitro lifespan. Their average longevity was significantly less than control skin fibroblasts, but there was extreme variability amongst parallel cultures. In the most thoroughly studied case, the longevity of 19 subcultures derived from a single biopsy varied from 5 to 26 passages, showing that there was considerable heterogeneity in the growth potential of the cells in the primary culture. Moreover, the growth rate from any one culture was not uniform, since long periods of slow growth were sometimes succeeded by much more rapid proliferation. These features of Werner's syndrome fibroblast populations are not seen in cultures from normal individuals. The longevity of fibroblasts from one progeria patient was also shown to be much shorter than controls. Metaphases from 3 Werner's patients demonstrated a much higher frequency of chromosome abnormalities than in normal fibroblasts and also provided evidence of subclones containing a characteristic 'marker' chromosome.