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Mendes CP, Albert WR, Amir Z, Ancrenaz M, Ash E, Azhar B, Bernard H, Brodie J, Bruce T, Carr E, Clements GR, Davies G, Deere NJ, Dinata Y, Donnelly CA, Duangchantrasiri S, Fredriksson G, Goossens B, Granados A, Hearn A, Hon J, Hughes T, Jansen P, Kawanishi K, Kinnaird M, Koh S, Latinne A, Linkie M, Loi F, Lynam AJ, Meijaard E, Mohd-Azlan J, Moore JH, Nathan SKSS, Ngoprasert D, Novarino W, Nursamsi I, O'Brien T, Ong R, Payne J, Priatna D, Rayan DM, Reynolds G, Rustam R, Selvadurai S, Shia A, Silmi M, Sinovas P, Sribuarod K, Steinmetz R, Struebig MJ, Sukmasuang R, Sunarto S, Tarmizi T, Thapa A, Traeholt C, Wearn OR, Wibisono HB, Wilting A, Wong ST, Wong ST, Word J, Chiok WX, Zainuddin ZZ, Luskin MS. CamTrapAsia: A dataset of tropical forest vertebrate communities from 239 camera trapping studies. Ecology 2024:e4299. [PMID: 38650359 DOI: 10.1002/ecy.4299] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/16/2023] [Revised: 09/26/2023] [Accepted: 01/30/2024] [Indexed: 04/25/2024]
Abstract
Information on tropical Asian vertebrates has traditionally been sparse, particularly when it comes to cryptic species inhabiting the dense forests of the region. Vertebrate populations are declining globally due to land-use change and hunting, the latter frequently referred as "defaunation." This is especially true in tropical Asia where there is extensive land-use change and high human densities. Robust monitoring requires that large volumes of vertebrate population data be made available for use by the scientific and applied communities. Camera traps have emerged as an effective, non-invasive, widespread, and common approach to surveying vertebrates in their natural habitats. However, camera-derived datasets remain scattered across a wide array of sources, including published scientific literature, gray literature, and unpublished works, making it challenging for researchers to harness the full potential of cameras for ecology, conservation, and management. In response, we collated and standardized observations from 239 camera trap studies conducted in tropical Asia. There were 278,260 independent records of 371 distinct species, comprising 232 mammals, 132 birds, and seven reptiles. The total trapping effort accumulated in this data paper consisted of 876,606 trap nights, distributed among Indonesia, Singapore, Malaysia, Bhutan, Thailand, Myanmar, Cambodia, Laos, Vietnam, Nepal, and far eastern India. The relatively standardized deployment methods in the region provide a consistent, reliable, and rich count data set relative to other large-scale pressence-only data sets, such as the Global Biodiversity Information Facility (GBIF) or citizen science repositories (e.g., iNaturalist), and is thus most similar to eBird. To facilitate the use of these data, we also provide mammalian species trait information and 13 environmental covariates calculated at three spatial scales around the camera survey centroids (within 10-, 20-, and 30-km buffers). We will update the dataset to include broader coverage of temperate Asia and add newer surveys and covariates as they become available. This dataset unlocks immense opportunities for single-species ecological or conservation studies as well as applied ecology, community ecology, and macroecology investigations. The data are fully available to the public for utilization and research. Please cite this data paper when utilizing the data.
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Affiliation(s)
- Calebe P Mendes
- Asian School of the Environment, Nanyang Technological University, Singapore, Singapore
- School of the Environment, University of Queensland, Brisbane, Queensland, Australia
| | | | - Zachary Amir
- School of the Environment, University of Queensland, Brisbane, Queensland, Australia
| | | | - Eric Ash
- WildCRU, Department of Zoology, University of Oxford, Oxford, UK
| | - Badrul Azhar
- Department of Forest Science and Biodiversity, Faculty of Forestry and Environment, Universiti Putra Malaysia, Serdang, Malaysia
| | - Henry Bernard
- Institute for Tropical Biology and Conservation, Universiti Malaysia Sabah, Kota Kinabalu, Malaysia
| | - Jedediah Brodie
- Wildlife Biology, University of Montana, Missoula, Montana, USA
| | - Tom Bruce
- School of the Environment, University of Queensland, Brisbane, Queensland, Australia
| | - Elliot Carr
- School of the Environment, University of Queensland, Brisbane, Queensland, Australia
| | | | - Glyn Davies
- Sabah Landscape Programme, World Wildlife Fund, Kota Kinabalu, Malaysia
| | - Nicolas J Deere
- Durrell Institute of Conservation and Ecology (DICE), University of Kent, Canterbury, UK
| | - Yoan Dinata
- Indonesia Program, Zoological Society of London, London, UK
| | | | - Somphot Duangchantrasiri
- Wildlife Research Division, "Department of National Parks, Plant, and Wildlife Conservation", Bangkok, Thailand
| | | | | | - Alys Granados
- Felidae Conservation Fund, Mill Valley, California, USA
| | - Andrew Hearn
- WildCRU, Department of Zoology, University of Oxford, Oxford, UK
| | - Jason Hon
- Malaysia Program, World Wildlife Fund, Kuching, Malaysia
| | - Tom Hughes
- Conservation Medicine, Sungai Buloh, Malaysia
| | - Patrick Jansen
- Wildlife Ecology and Conservation, Wageningen University, Wageningen, Netherlands
| | - Kae Kawanishi
- Malaysian Conservation Alliance for Tigers (MYCAT), Kuala Lumpur, Malaysia
| | | | - Sharon Koh
- Malaysia Program, World Wildlife Fund, Kuching, Malaysia
| | - Alice Latinne
- Viet Nam Country Program, Wildlife Conservation Society, New York, New York, USA
| | - Matthew Linkie
- Indonesia Program, Wildlife Conservation Society, Bogor, Indonesia
| | - Federica Loi
- Regional Veterinary Epidemiological Observatory, Istituto Zooprofilattico Sperimentale della Sardegna, Cagliari, Italy
| | - Anthony J Lynam
- Thailand Program, Wildlife Conservation Society, Nonthaburi, Thailand
| | | | | | | | | | - Dusit Ngoprasert
- Conservation Ecology, King Mongkut's University of Technology Thonburi, Thon Buri, Thailand
| | - Wilson Novarino
- Department of Biology, Andalas University, Padang, Indonesia
| | - Ilyas Nursamsi
- School of the Environment, University of Queensland, Brisbane, Queensland, Australia
| | | | - Robert Ong
- Borneo Rhino Alliance, Kota Kinabalu, Malaysia
| | - John Payne
- Borneo Rhino Alliance, Kota Kinabalu, Malaysia
| | - Dolly Priatna
- Graduate School of Environmental Management, Pakuan University, Bogor, Indonesia
| | - D Mark Rayan
- Malaysia Program, Wildlife Conservation Society, New York, New York, USA
| | - Glen Reynolds
- Conservation Programme, South East Asia Rainforest Research Partnership (SEARRP), Kota Kinabalu, Malaysia
| | - Rustam Rustam
- Faculty of Forestry, Mulawarman University, Kota Samarinda, Indonesia
| | - Sasidhran Selvadurai
- Department of Forest Science and Biodiversity, Faculty of Forestry and Environment, Universiti Putra Malaysia, Serdang, Malaysia
| | | | - Muhammad Silmi
- Biodiversity Division, United Plantations Berhad-PT Surya Sawit Sejati, Central Kalimantan, Indonesia
| | - Pablo Sinovas
- Cambodia Programme, Fauna & Flora International, Phnom Penh, Cambodia
| | - Kriangsak Sribuarod
- Klongsang Wildlife Research Station, Department of National Park Wildlife and Plant, Khlong Saeng Wildlife Research Station, Bangkok, Thailand
| | | | - Matthew J Struebig
- Durrell Institute of Conservation and Ecology (DICE), University of Kent, Canterbury, UK
| | | | | | | | - Arjun Thapa
- School of the Environment, University of Queensland, Brisbane, Queensland, Australia
| | - Carl Traeholt
- Research and Conservation Division, Copenhagen Zoo, Copenhagen, Denmark
| | - Oliver R Wearn
- Vietnam Programme, Fauna & Flora International, Hanoi, Vietnam
| | | | - Andreas Wilting
- Department of Ecological Dynamics, Leibniz Institute of Zoo and Wildlife Research, Berlin, Germany
| | - Seth Timothy Wong
- Department of Ecological Dynamics, Leibniz Institute of Zoo and Wildlife Research, Berlin, Germany
| | - Siew Te Wong
- Bornean Sun Bear Conservation Centre, Sandakan, Malaysia
| | | | - Wen Xuan Chiok
- Asian School of the Environment, Nanyang Technological University, Singapore, Singapore
| | | | - Matthew Scott Luskin
- School of the Environment, University of Queensland, Brisbane, Queensland, Australia
- Centre for Biodiversity and Conservation Science, University of Queensland, Brisbane, Queensland, Australia
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Nagai K, Manawatthana S, Tokita KI, Nualsri C, Pierce AJ, Sutasha K, Sribuarod K, Takehara K, Round PD, Higuchi H. Genetic Structure in Japanese and Thai Populations of the Japanese Sparrowhawk Accipiter gularis. Zoolog Sci 2020; 37:232-239. [PMID: 32549537 DOI: 10.2108/zs190104] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2019] [Accepted: 01/15/2020] [Indexed: 11/17/2022]
Abstract
The Japanese sparrowhawk Accipiter gularis is a small raptor that breeds in Northeast Asia. The species consists of the widespread and mostly migratory subspecies A. g. gularis that is common in East Asia, including Japan, and the resident and endangered subspecies A. g. iwasakii which inhabits the Ryukyu and Yaeyama Islands in Okinawa, southern Japan. Given the minimal knowledge about the migration of the species, in this study we sought to compare the genetic variation of the populations breeding in Japan with those migrating through Southeast Asia. We sequenced 761 bp of mitochondrial DNA Control Region from each of 21 A. gularis collected during the breeding season in Japan and from 20 individuals intercepted on migration in Thailand. We detected 26 haplotypes among the 41 individuals which differed significantly between Japan and Thailand. Migrants in Thailand were presumed to have originated from a wide area in Eastern Eurasia. The phylogenetic and network analyses demonstrated that the haplotypes of all A. g. gularis detected in Japan were genetically close. Moreover, the Okinawa haplotypes of A. g. iwasakii were clustered with moderate genetic variation. The information presented here can be used towards implementing future conservation actions.
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Affiliation(s)
- Kazuya Nagai
- Faculty of Agriculture, Iwate University, Morioka, Iwate 020-8550, Japan.,Research and Education Centre for Natural Sciences, Keio University, Yokohama, Kanagawa 223-8521, Japan,
| | - Sontaya Manawatthana
- Department of Biology, Faculty of Science, Mahidol University, Bangkok 10400, Thailand
| | - Ken-Ichi Tokita
- Research and Education Centre for Natural Sciences, Keio University, Yokohama, Kanagawa 223-8521, Japan
| | - Chukiat Nualsri
- Monnang Subdistrict Municipality, Monnang, Phanat Nikhom, Chonburi 20140, Thailand
| | - Andrew J Pierce
- Conservation Ecology Program, School of Bioresources and Technology, King Mongkut's University of Technology Thonburi, Bangkhunthien, Bangkok 10150, Thailand
| | - Kaset Sutasha
- Veterinary Teaching Hospital, Faculty of Veterinary Medicine, Kasetsart University, Bangkok 10900, Thailand
| | - Kriangsak Sribuarod
- Khlong Saeng Wildlife Research Station, Department of National Parks, Wildlife and Plants Conservation, Khao Phang, Ban Tha Khun, Surat Thani 84230, Thailand
| | | | - Philip D Round
- Department of Biology, Faculty of Science, Mahidol University, Bangkok 10400, Thailand
| | - Hiroyoshi Higuchi
- Research and Education Centre for Natural Sciences, Keio University, Yokohama, Kanagawa 223-8521, Japan
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Inthong N, Sutacha K, Kaewmongkol S, Sinsiri R, Sribuarod K, Sirinarumitr K, Sirinarumitr T. Feline panleukopenia virus as the cause of diarrhea in a banded linsang (Prionodon linsang) in Thailand. J Vet Med Sci 2019; 81:1763-1768. [PMID: 31548471 PMCID: PMC6943334 DOI: 10.1292/jvms.19-0238] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023] Open
Abstract
A banded linsang (Prionodon linsang) presented at our hospital with clinical signs of acute diarrhea. Fecal samples were positive for canine parvovirus (CPV) as determined by polymerase chain reaction with primers specific for both CPV and feline panleukopenia virus (FPV). The full-length VP2 was cloned, sequenced, and compared with sequences of FPV and CPV strains reported in GenBank. The amino acids that determined the host range were similar to those of FPV. Moreover, amino acid analysis of VP2 revealed over 98% homology to FPV. The FPV isolate was closely related with FPV isolates from Japan, South Korea, and China. To the best of our knowledge, this is the first study to report that banded linsang can be infected with FPV.
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Affiliation(s)
- Natnaree Inthong
- Department of Veterinary Technology, Faculty of Veterinary Technology, Kasetsart University, Bangkok 10900, Thailand.,Center for Agricultural Biotechnology, Kasetsart University, Kamphaeng Sean Campus, Nakhon Pathom 73140, Thailand.,Center of Excellence on Agricultural Biotechnology (AG-BIO/PERDO-CHE), Bangkok 10900, Thailand
| | - Kaset Sutacha
- The Veterinary Teaching Hospital, Bang Khaen campus, Faculty of Veterinary Medicine, Kasetsart University, Bangkok 10900, Thailand
| | - Sarawan Kaewmongkol
- Department of Veterinary Technology, Faculty of Veterinary Technology, Kasetsart University, Bangkok 10900, Thailand
| | - Rungthiwa Sinsiri
- Molecular Diagnostic Laboratory, Faculty of Veterinary Medicine, Kasetsart University, Bangkok 10900, Thailand
| | - Kriangsak Sribuarod
- Khlong Saeng Wildlife Research Station, Wildlife Research Division, Wildlife Conservation Bureau, Department of National Park, Wildlife and Plant Conservation, Ministry of Natural Resources and Environment, Bangkok 10900, Thailand
| | - Kaitkanoke Sirinarumitr
- Center of Excellence on Agricultural Biotechnology (AG-BIO/PERDO-CHE), Bangkok 10900, Thailand.,Department of Small Animal Clinical Sciences, Faculty of Veterinary Medicine, Kasetsart University, Bangkok 10900, Thailand
| | - Theerapol Sirinarumitr
- Center of Excellence on Agricultural Biotechnology (AG-BIO/PERDO-CHE), Bangkok 10900, Thailand.,Department of Pathology, Faculty of Veterinary Medicine, Kasetsart University, Bangkok 10900, Thailand
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