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Smith MA, Boyd A, Chan A, Clout S, des Brisay P, Dolson S, Eagalle T, Espinola S, Fairweather A, Frank S, Fruetel C, Garrido Cortes C, Hall J, Ho C, Matczak E, McCubbin S, McPhee M, Pare KA, Paris K, Richard E, Roblin M, Russell C, Snyder R, Trombley C, Schmitt T, Vandermeer C, Warne C, Welch N, Xavier-Blower C. Investigating the effect of forestry on leaf-litter arthropods (Algonquin Park, Ontario, Canada). PLoS One 2017; 12:e0178568. [PMID: 28575022 PMCID: PMC5456079 DOI: 10.1371/journal.pone.0178568] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2017] [Accepted: 05/15/2017] [Indexed: 12/13/2022] Open
Abstract
Arthropods are the most diverse taxonomic group of terrestrial eukaryotes and are sensitive to physical alterations in their environment such as those caused by forestry. With their enormous diversity and physical omnipresence, arthropods could be powerful indicators of the effects of disturbance following forestry. When arthropods have been used to measure the effects of disturbance, the total diversity of some groups is often found to increase following forestry. However, these findings are frequently derived using a coarse taxonomic grain (family or order) to accommodate for various taxonomic impediments (including cryptic diversity and poorly resourced taxonomists). Our intent with this work was to determine the diversity of arthropods in and around Algonquin Park, and how this diversity was influenced by disturbance (in this case, forestry within the past 25 years). We used DNA barcode-derived diversity estimates (Barcode Index Number (BIN) richness) to avoid taxonomic impediments and as a source of genetic information with which we could conduct phylogenetic estimates of diversity (PD). Diversity patterns elucidated with PD are often, but not always congruent with taxonomic estimates-and departures from these expectations can help clarify disturbance effects that are hidden from richness studies alone. We found that BIN richness and PD were greater in disturbed (forested) areas, however when we controlled for the expected relationship between PD and BIN richness, we found that cut sites contained less PD than expected and that this diversity was more phylogenetically clustered than would be predicted by taxonomic richness. While disturbance may cause an evident increase in diversity, this diversity may not reflect the full evolutionary history of the assemblage within that area and thus a subtle effect of disturbance can be found decades following forestry.
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Affiliation(s)
- M Alex Smith
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Amanda Boyd
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Amelia Chan
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Simonne Clout
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Paulson des Brisay
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Sarah Dolson
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Thanushi Eagalle
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Sean Espinola
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Aaron Fairweather
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Sydney Frank
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Christopher Fruetel
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | | | - James Hall
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Chris Ho
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Eryk Matczak
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Sandra McCubbin
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Megan McPhee
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Kate A Pare
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Kelsie Paris
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Ellen Richard
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Morgan Roblin
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Cassandra Russell
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Ryan Snyder
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Carolyn Trombley
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Tyler Schmitt
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Caitlin Vandermeer
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Connor Warne
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Natasha Welch
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
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Gilliam AD, Watson SA, Henwood M, McKenzie AJ, Humphreys JE, Elder J, Iftikhar SY, Welch N, Fielding J, Broome P, Michaeli D. A phase II study of G17DT in gastric carcinoma. Eur J Surg Oncol 2004; 30:536-43. [PMID: 15135483 DOI: 10.1016/j.ejso.2004.03.009] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/04/2004] [Indexed: 02/08/2023] Open
Abstract
PURPOSE G17DT is a gastrin immunogen, raising antibodies that blockade gastrin-stimulated growth. The aim of the study was to characterise antibody response and assess safety and tolerability of G17DT given to patients with gastric cancer. EXPERIMENTAL DESIGN G17DT was administered to 52 patients with gastric adenocarcinoma at weeks 0, 2 and 6 by intramuscular injection at doses of 10, 100 and 250 microg. Antibody levels were measured by an ELISA assay. A radioligand displacement assay determined the ability of G17DT-immunised patients' sera to inhibit binding of 125IG17 to cholecystokinin (CCK)-2 receptors. RESULTS By week 12 of the study, 6/12 evaluable stage I-III patients achieved an antibody response in the 10 microg group, 7/11 in the 100 microg group, and 11/12 in the 250 microg group. Stage IV patients dosed at 250 microg achieved a similar response rate to stage I-III patients dosed at 10 or 100 microg. G17DT was well tolerated in 47/52 patients. Two patients suffered significant adverse reactions including injection site pain and abscess. G17DT antibodies displaced iodinated gastrin from CCK-2 receptors, with the level of displacement correlating with antibody titre. CONCLUSIONS G17DT immunisation is a well-tolerated method of raising functional antibodies to 17 amino acid gastrin forms in patients with gastric carcinomas.
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Affiliation(s)
- A D Gilliam
- Academic Unit of Cancer Studies, D Floor, West Block, Queen's Medical Centre, University Hospital, Nottingham NG7 2UH, UK
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Abstract
Virtually all current theories of choice under risk or uncertainty are cognitive and consequentialist. They assume that people assess the desirability and likelihood of possible outcomes of choice alternatives and integrate this information through some type of expectation-based calculus to arrive at a decision. The authors propose an alternative theoretical perspective, the risk-as-feelings hypothesis, that highlights the role of affect experienced at the moment of decision making. Drawing on research from clinical, physiological, and other subfields of psychology, they show that emotional reactions to risky situations often diverge from cognitive assessments of those risks. When such divergence occurs, emotional reactions often drive behavior. The risk-as-feelings hypothesis is shown to explain a wide range of phenomena that have resisted interpretation in cognitive-consequentialist terms.
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Affiliation(s)
- G F Loewenstein
- Department of Social and Decision Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213-3890, USA.
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Adachi K, Konitzer P, Kim J, Welch N, Surrey S. Effects of beta 6 aromatic amino acids on polymerization and solubility of recombinant hemoglobins made in yeast. J Biol Chem 1993; 268:21650-6. [PMID: 8408017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023] Open
Abstract
Valine, leucine, tryptophan, and phenylalanine substitutions at the beta 6 position of hemoglobin (Hb) were made using a yeast expression system coupled with a polymerase chain reaction-based mutagenesis strategy. The oxygen affinity and absorption spectra of these mutants were similar to recombinant Hb A except for Hb beta E6W which had a higher absorbance at approximately 280 nm. The deoxy forms of Hb beta E6L and Hb S showed characteristic delay times prior to polymerization. Tetrameric deoxy-Hbs containing tryptophan or phenylalanine at the beta 6 position had higher solubilities and polymerized less readily compared with deoxy-Hb S. However, when oversaturated, these Hbs polymerized without a delay time. These results suggest that Hb beta E6W and Hb beta E6F form polymers upon deoxygenation by a linear polymerization mechanism without nuclei formation. During polymerization, bulky hydrophobic amino acids, like phenylalanine and tryptophan at the beta 6 position, might interact with the acceptor pocket on the surface of an adjacent Hb molecule but may not be able to form stable hydrophobic interactions like beta 6 valine and leucine. Difficulty in insertion of the bulky side chains of these aromatic amino acids into the hydrophobic acceptor pocket on an adjacent tetramer may inhibit nuclei formation prior to polymerization.
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Affiliation(s)
- K Adachi
- Children's Hospital of Philadelphia, Department of Pediatrics, Pennsylvania 19104
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Westerdahl BB, Carlson HL, Grant J, Radewald JD, Welch N, Anderson CA, Darso J, Kirby D, Shibuya F. Management of Plant-parasitic Nematodes with a Chitin-Urea Soil Amendment and Other Materials. J Nematol 1992; 24:669-680. [PMID: 19283044 PMCID: PMC2629878] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/27/2023] Open
Abstract
Field trials were conducted with a chitin-urea soil amendment and several other nematicides on four crop-nematode combinations: tomato-Meloidogyne incognita; potato-Meloidogyne chitwoodi; walnut-Pratylenchus vulnus; and brussels sprouts-Heterodera schachtii. Significant (P </= 0.10) nematode population reductions were obtained with the chitin-urea soil amendment in the trims on potato and walnut. In the trials on brussels sprouts and on tomato, phytotoxicity occurred at rates of 1,868 and 1,093 kg/ha, respectively. Significant (P </= 0.10) nematode reductions were also obtained with metham sodium on potato; with 1,3-D on tomato and brussels sprouts; and with sodium tetrathiocarbonate, XRM 5053, fenamiphos, ethoprop, LX1075-05, LX1075-07, and SN 109106 on tomato. The following materials did not provide significant nematode control under the conditions of the particular experiments: metham sodium, oxamyl, and Yucca extract on tomato; and dazomet granules on brussels sprouts.
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