Analytical advances alleviate model misspecification in non-Brownian multivariate comparative methods

Adams and Collyer argue that contemporary multivariate (Gaussian) phylogenetic comparative methods are prone to favouring more complex models of evolution and sometimes rotation invariance can be an issue. Here we dissect the concept of rotation invariance and point out that, depending on the understanding, this can be an issue with any method that relies on numerical instead of analytical estimation approaches. We relate this to the ongoing discussion concerning phylogenetic principal component analysis. Contrary to what Adams and Collyer found, we do not observe a bias against the simpler Brownian motion process in simulations when we use the new, improved, likelihood evaluation algorithm employed by mvSLOUCH, which allows for studying much larger phylogenies and more complex model setups.

Incorporating high-resolution climate, remote sensing and topographic data to map annual forest growth in central and eastern Europe

To enhance our understanding of forest carbon sequestration, climate change mitigation and drought impact on forest ecosystems, the availability of high-resolution annual forest growth maps based on tree-ring width (TRW) would provide a significant advancement to the field. Site-specific characteristics, which can be approximated by high-resolution Earth observation by satellites (EOS), emerge as crucial drivers of forest growth, influencing how climate translates into tree growth. EOS provides information on surface reflectance related to forest characteristics and thus can potentially improve the accuracy of forest growth models based on TRW. Through the modelling of TRW using EOS, climate and topography data, we showed that species-specific models can explain up to 52 % of model variance (Quercus petraea), while combining different species results in relatively poor model performance (R2 = 13 %). The integration of EOS into models based solely on climate and elevation data improved the explained variance by 6 % on average. Leveraging these insights, we successfully generated a map of annual TRW for the year 2021. We employed the area of applicability (AOA) approach to delineate the range in which our models are deemed valid. The calculated AOA for the established forest-type models was 73 % of the study region, indicating robust spatial applicability. Notably, unreliable predictions predominantly occurred in the climate margins of our dataset. In conclusion, our large-scale assessment underscores the efficacy of combining climate, EOS and topographic data to develop robust models for mapping annual TRW. This research not only fills a critical void in the current understanding of forest growth dynamics but also highlights the potential of integrated data sources for comprehensive ecosystem assessments.

Forest herb species with similar European geographic ranges may respond differently to climate change

Many phenological studies have shown that spring geophytes are very sensitive to climate change, responding by shifting flowering and fruiting dates. However, there is a gap in knowledge about climatic drivers of their distributions and range shifts under climate change. Here we aimed to estimate climate niche shifts for four widely distributed and common geophytes of the nemoral zone of Europe (Anemone nemorosa, Anemone ranunculoides, Convallaria majalis and Maianthemum bifolium) and to assess the threat level under various climate change scenarios. Using MaxEnt species distribution models and future climate change scenarios we found that the precipitation of the warmest quarter was the most important factor shaping their ranges. All species studied will experience more loss in the 2061-2080 period than in 2041-2060, and under more pessimistic scenarios. M. bifolium will experience the highest loss, followed by A. nemorosa, A. ranunculoides, and the smallest for C. majalis. A. ranunculoides will gain the most, while M. bifolium will have the smallest potential range expansion. Studied species may respond differently to climate change despite similar current distributions and climatic variables affecting their potential distribution. Even slight differences in climatic niches could reduce the overlap of future ranges compared to present. We expect that due to high dependence on the warmest quarter precipitation, summer droughts in the future may be particularly severe for species that prefer moist soils. The lack of adaptation to long-distance migration and limited availability of appropriate soils may limit their migration and lead to a decline in biodiversity and changes in European forests.

Is there Chornobyl nuclear accident signature in Scots pine radial growth and its climate sensitivity?

The extensive radioactive fallout resulting from the 1986 Chornobyl accident caused tree death near the nuclear power plant and perturbed trees communities throughout the whole Chornobyl exclusion zone. Thirty years into the post-accident period, the radiation continues to exert its fatal effects on the surviving trees. However, to what extent the continuous multi-decadal radiation exposure has affected the radial tree growth and its sensitivity to climate variation remains unascertained. In this comparative study, we measure the Scots pine radial growth and quantify its response to climate at two sites along the western track of the nuclear fallout that received significantly different doses of radiation in 1986. The common features of the two sites allow us to disentangle and intercompare the effects of sub-lethal and moderate radiation doses on the pine's growth and climatic sensitivity. We extend the response function analysis by making the first use of the Full-Duration at Half-Maximum FDHM method in dendrochronology and apply the double-moving window approach to detect the main patterns of the growth-to-climate relationships and their temporal evolution. The stand exposed to sub-lethal radiation shows a significant radial growth reduction in 1986 with a deflection period of one year. The stand exposed to moderate radiation, in contrast, demonstrates no significant decrease in growth either in 1986 or in the following years. Beyond the radiation effects, the moving response function and FDHM enabled us to detect several mutual patterns in the growth-to-climate relationships, which are seemingly unrelated to the nuclear accident. To advance our predictive understanding of the response of forest ecosystems to a massive radioactive contamination, future studies should include quantitative wood anatomy techniques.

Climate change will cause climatic niche contraction of Vaccinium myrtillus L. and V. vitis-idaea L. in Europe

We estimated climate niche shifts and threat levels under various climate change scenarios for Vaccinium myrtillus L. and V. vitis-idaea L. We developed the MaxEnt species distribution models, and predicted future climatic optima for climate change scenarios for 2041-2060 and 2061-2080. The precipitation of the warmest quarter was the most important factor shaping the climatic niches of the studied species. We predicted the largest shifts in climate niches from the present to the 2040-2060 period, with the most pessimistic scenario predicting significant range losses for both species, mainly in Western Europe. Under the most optimistic SSP126 scenario, both species will lose 39 % of their climatic niche for both periods. In the worst-case scenario (SSP585) for 2061-2080, climatic niche contraction will cover 47 % and 39 % of the current climatic niche for V. myrtillus and V. vitis-idaea, respectively. The predicted changes in species distribution could have far-reaching consequences for temperate and boreal forests due to their crucial biocenotic role in forest ecosystems, high potential for carbon sequestration, and prevention of soil erosion. Furthermore, the changes would likely affect the economic potential regarding fruit production and culturally relevant uses of different parts of the plants, mainly fruits.

Model Selection Performance in Phylogenetic Comparative Methods Under Multivariate Ornstein-Uhlenbeck Models of Trait Evolution

The advent of fast computational algorithms for phylogenetic comparative methods allows for considering multiple hypotheses concerning the co-adaptation of traits and also for studying if it is possible to distinguish between such models based on contemporary species measurements. Here we demonstrate how one can perform a study with multiple competing hypotheses using mvSLOUCH by analysing two data sets, one concerning feeding styles and oral morphology in ungulates, and the other concerning fruit evolution in Ferula (Apiaceae). We also perform simulations to determine if it is possible to distinguish between various adaptive hypotheses. We find that Akaike's information criterion corrected for small sample size has the ability to distinguish between most pairs of considered models. However, in some cases there seems to be bias towards Brownian motion or simpler Ornstein-Uhlenbeck models. We also find that measurement error and forcing the sign of the diagonal of the drift matrix for an Ornstein-Uhlenbeck process influences identifiability capabilities. It is a cliché that some models, despite being imperfect, are more useful than others. Nonetheless, having a much larger repertoire of models will surely lead to a better understanding of the natural world, as it will allow for dissecting in what ways they are wrong.

Impact of non-native tree species in Europe on soil properties and biodiversity: a review

In the context of global change, the integration of non-native tree (NNT) species into European forestry is increasingly being discussed. The ecological consequences of increasing use or spread of NNTs in European forests are highly uncertain, as the scientific evidence is either constraint to results from case studies with limited spatial extent, or concerns global assessments that lack focus on European NNTs. For either case, generalisations on European NNTs are challenging to draw. Here we compile data on the impacts of seven important NNTs (Acacia dealbata, Ailanthus altissima, Eucalyptus globulus, Prunus serotina, Pseudotsuga menziesii, Quercus rubra, Robinia pseudoacacia) on physical and chemical soil properties and diversity attributes in Europe, and summarise commonalities and differences. From a total of 103 publications considered, studies on diversity attributes were overall more frequent than studies on soil properties. The effects on soil properties varied greatly among tree species and depended on the respective soil property. Overall, increasing (45%) and decreasing (45%) impacts on soil occurred with similar frequency. In contrast, decreasing impacts on biodiversity were much more frequent (66%) than increasing ones (24%). Species phylogenetically distant from European tree species, such as Acacia dealbata, Eucalyptus globulus and Ailanthus altissima, showed the strongest decreasing impacts on biodiversity. Our results suggest that forest managers should be cautious in using NNTs, as a majority of NNT stands host fewer species when compared with native tree species or ecosystems, likely reflected in changes in biotic interactions and ecosystem functions. The high variability of impacts suggests that individual NNTs should be assessed separately, but NNTs that lack European relatives should be used with particular caution.

Black locust (Robinia pseudoacacia L.) range contraction and expansion in Europe under changing climate

Robinia pseudoacacia is one of the most frequent non-native species in Europe. It is a fast-growing tree of high economic and cultural importance. On the other hand, it is an invasive species, causing changes in soil chemistry and light regime, and consequently altering the plant communities. Previously published models developed for the potential distribution of R. pseudoacacia concerned 2070, and were based mainly on data from Western and Central Europe; here we extended these findings and included additional data from Eastern Europe. To fill the gap in current knowledge of R. pseudoacacia distribution and improve the reliability of forecasts, we aimed to (i) determine the extent to which the outcome of range modeling will be affected by complementing R. pseudoacacia occurrence data with sites from Central, Southeastern, and Eastern Europe, (ii) identify and quantify the changes in the availability of climate niches for 2050 and 2070, and discuss their impacts on forest management and nature conservation. We showed that the majority of the range changes expected in 2070 will occur as early as 2050. In comparison to previous studies, we demonstrated a greater eastward shift of potential niches of this species and a greater decline of potential niches in Southern Europe. Consequently, future climatic conditions will likely favor the occurrence of R. pseudoacacia in Central and Northeastern Europe where this species is still absent or relatively rare. There, controlling the spread of R. pseudoacacia will require monitoring sources of invasion in the landscape and reducing the occurrence of this species. The expected effects of climate change will likely be observed 20 years earlier than previously forecasted. Hence we highlighted the urgent need for acceleration of policies aimed at climate change mitigation in Europe. Also, our results showed the need for using more complete distribution data to analyze potential niche models.

ConservePlants: An integrated approach to conservation of threatened plants for the 21st Century

Even though plants represent an essential part of our lives offering exploitational, supporting and cultural services, we know very little about the biology of the rarest and most threatened plant species, and even less about their conservation status. Rapid changes in the environment and climate, today more pronounced than ever, affect their fitness and distribution causing rapid species declines, sometimes even before they had been discovered. Despite the high goals set by conservationists to protect native plants from further degradation and extinction, the initiatives for the conservation of threatened species in Europe are scattered and have not yielded the desired results. The main aim of this Action is to improve plant conservation in Europe through the establishment of a network of scientists and other stakeholders who deal with different aspects of plant conservation, from plant taxonomy, ecology, conservation genetics, conservation physiology and reproductive biology to protected area's managers, not forgetting social scientists, who are crucial when dealing with the general public.

Limitations at the Limit? Diminishing of Genetic Effects in Norway Spruce Provenance Trials

Provenance trials are used to study the effects of tree origin on climate-growth relationships. Thereby, they potentially identify provenances which appear more resilient to anticipated climate change. However, when studying between provenance variability in growth behavior it becomes important to address potential effects related to site marginality in the context of provenance trials. In our study we focus on provenance-specific climate sensitivity manifested under marginal growth conditions. We hypothesized that the provenance effects are masked if trials are located at marginal environmental conditions of the natural species distribution. Under this framework, we investigate 10 Norway spruce provenances growing at two contrasting locations, i.e., a relatively drought-prone site in western Poland (at the climatic margin of Norway spruce's natural distribution) and a mild and moist site in north-eastern Poland (within its natural range). Combining principal component analysis with climate-growth relationships, we found distinguishable growth patterns and climate correlations among provenances. That is, at the mild and moist north-eastern site, we observed provenance-specific growth patterns and thus a varying drought susceptibility. In contrast, at the dryer western site, provenance-specific growth patterns were less pronounced and all provenances expressed a common and strong sensitivity to drought. Our results indicate that the genetic specificity of growth reactions diminishes toward the distributional margins of a given species. We conclude that the climate conditions at the margins of a species' distribution are constraining tree growth independently of tree origin. Because of this, the marginality of a site has to be considered when evaluating climate sensitivity of provenances within trials. As a consequence, the yet different responses of provenances to adverse growing conditions may synchronize under more extreme conditions in course of the anticipated climate change.

Ecological drift and competitive interactions predict unique patterns in temporal fluctuations of population size

Recent studies have highlighted the importance of higher-order competitive interactions in stabilizing population dynamics in multi-species communities. But how does the structure of competitive hierarchies affect population dynamics and extinction processes? We tackled this important question by using spatially explicit simulations of ecological drift (10 species in a homogeneous landscape of 64 patches) in which birth rates were influenced by interspecific competition. Specifically, we examined how transitive (linear pecking orders) and intransitive (pecking orders with loops) competitive hierarchies affected extinction rates and population dynamics in simulated communities through time. In comparison to a pure neutral model, an ecological drift model including transitive competition increased extinction rates, caused synchronous density-dependent population fluctuations, and generated a white-noise distribution of population sizes. In contrast, the drift model with intransitive competitive interactions decreased extinctions rates, caused asynchronous (compensatory) density-dependent population fluctuations, and generated a brown noise distribution of population sizes. We also explored the effect on community stability of more complex patterns of competitive interactions in which pairwise competitive relationships were assigned probabilistically. These probabilistic competition models also generated density-dependent trajectories and a brown noise distribution of population sizes. However, extinction rates and the degree of population synchrony were comparable to those observed in purely neutral communities. Collectively, our results confirm that intransitive competition has a strong and stabilizing effect on local populations in species-poor communities. This effect wanes with increasing species richness. Empirical assemblages characterized by brown spectral noise, density-dependent regulation, and asynchronous (compensatory) population fluctuations may indicate a signature of intransitive competitive interactions.

River Regulation Causes Rapid Changes in Relationships Between Floodplain Oak Growth and Environmental Variables

The radial growth of pedunculate oak (Quercus robur), a species often ecologically dominating European deciduous forests, is closely tied up with local environmental variables. The oak tree-ring series usually contain a climatic and hydrologic signal that allows assessing the main drivers of tree growth in various ecosystems. Understanding the climate-growth relationship patterns in floodplains is important for providing insights into the species persistence and longevity in vulnerable riverine ecosystems experiencing human-induced hydrology alteration. Here, we use 139 years long instrumental records of local temperature, precipitation, and water levels in the Dnipro River in Kyiv to demonstrate that the implementation of river regulation has decoupled the established relationship between the radial growth of floodplain oak and local hydro-climatic conditions. Before the river flow has been altered by engineering modifications of 1965-1977, the water level in the Dnipro River was the key driver of oak radial growth, as reflected in the tree-ring width and earlywood width. The construction of two dams has altered the seasonal distribution of water level diminishing the positive effect of high water on oak growth and subsequently reversing this trend to negative, resulting from a seasonal ground water surplus. The decrease in the correlation between oak growth indices and the river's water level in April-June was unprecedentedly rapid and clearly distinguishable among other changes in the growth-to-climate relationship. Our findings further demonstrate that trees growing in areas exposed to urban development are the most susceptible to downside effects of river regulation.

Environmental filtering triggers community assembly of forest understorey plants in Central European pine stands

Habitat filtering models predict ecologically similar plant species to jointly colonize sites due to comparable environmental characteristics leading to an aggregated pattern of species spatial occurrence. Models focused on interspecific competition expect species with similar ecological requirements to be spatially segregated. While both models are corroborated by field work, few empirical studies have tried to infer under which habitat conditions these patterns of co-occurrence prevail. Here we use an exceptional data set on central European pine forest understorey plant communities to assess the change in community structure along gradients of soil productivity and heterogeneity. We found all understorey communities to be significantly nested. The degree of segregation increased with increasing soil Ca and Mg content, as well as with increasing pH, nutrient availability, and moisture. However, variability in soil characteristics did not significantly influence the pattern of species co-occurrence. We also found an intimate link between productivity, species richness, and species segregation making any causal inference challenging. These results point to possible misinterpretations and pitfalls in studies on community assembly. Finally our results demonstrate that managed forests provide a natural experiment of understorey community assembly under controlled conditions, an experiment that deserves further attention.

Did the late spring frost in 2007 and 2011 affect tree-ring width and earlywood vessel size in Pedunculate oak (Quercus robur) in northern Poland?

Trees are sensitive to extreme weather and environmental conditions. This sensitivity is visible in tree-ring widths and cell structure. In our study, we hypothesized that the sudden frost noted at the beginning of May in both 2007 and 2011 affected cambial activity and, consequently, the number and size of vessels in the tree rings. It was decided to test this hypothesis after damage to leaves was observed. The applied response function model did not show any significant relationships between spring temperature and growth. However, this method uses average values for long periods and sometimes misses the short-term effects. This is why we decided to study each ring separately, comparing them with rings unaffected by the late frost. Our study showed that the short-term effect of sudden frost in late spring did not affect tree rings and selected cell parameters. The most likely reasons for this are (i) cambial activity producing the earlywood vessels before the occurrence of the observed leaf damage, (ii) the forest micro-climate protecting the trees from the harsh frost and (iii) the temperature decline being too short-lived an event to affect the oaks. On the other hand, the visible damage may be occasional and not affect cambium activity and tree vitality at all. We conclude that oak is well-adapted to this phenomenon.

Expression of anatomical leaf traits in homoploid hybrids between deciduous and evergreen species of Vaccinium

We investigated the anatomical expression of leaf traits in hybrids between evergreen Vaccinium vitis-idaea and deciduous V. myrtillus. We compared parents from four populations with their respective F1 hybrids and tested whether (i) transgression can be the source of novel anatomical traits in hybrids; (ii) expression of transgressive traits is more probable for traits with similar values in parents and intermediate for more distinct values, as predicted by theory; and (iii) independent origin of hybrids leads to identical trait expression profiles among populations. We found that anatomical leaf traits can be divided into four categories based on their similarity to parents: intermediate, parental-like, transgressive and non-significant. Contrary to the common view, parental-like trait values were equally important in shaping the hybrid profile, as were intermediate traits. Transgression was revealed in 17/144 cases and concerned mainly cell and tissue sizes. As predicted by theory, we observed transgressive segregation more often when there was little phenotypic divergence, but intermediate values when parental traits were differentiated. It is likely that cell and tissue sizes are phylogenetically more conserved due to stabilising selection, whereas traits such as leaf thickness and volume fraction of the intercellular spaces, showing a consistent intermediate pattern across populations, are more susceptible to directional selection. Hybrid populations showed little similarity in expression profile, with only three traits identically expressed across all populations. Thus local adaptation of parental species and specific genetic background may be of importance.