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García-García I, Donica O, Cohen AA, Gonseth Nusslé S, Heini A, Nusslé S, Pichard C, Rietschel E, Tanackovic G, Folli S, Draganski B. Maintaining brain health across the lifespan. Neurosci Biobehav Rev 2023; 153:105365. [PMID: 37604360 DOI: 10.1016/j.neubiorev.2023.105365] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2023] [Revised: 07/24/2023] [Accepted: 08/17/2023] [Indexed: 08/23/2023]
Abstract
Across the lifespan, the human body and brain endure the impact of a plethora of exogenous and endogenous factors that determine the health outcome in old age. The overwhelming inter-individual variance spans between progressive frailty with loss of autonomy to largely preserved physical, cognitive, and social functions. Understanding the mechanisms underlying the diverse aging trajectories can inform future strategies to maintain a healthy body and brain. Here we provide a comprehensive overview of the current literature on lifetime factors governing brain health. We present the growing body of evidence that unhealthy alimentary regime, sedentary behaviour, sleep pathologies, cardio-vascular risk factors, and chronic inflammation exert their harmful effects in a cumulative and gradual manner, and that timely and efficient intervention could promote healthy and successful aging. We discuss the main effects and interactions between these risk factors and the resulting brain health outcomes to follow with a description of current strategies aiming to eliminate, treat, or counteract the risk factors. We conclude that the detailed insights about modifiable risk factors could inform personalized multi-domain strategies for brain health maintenance on the background of increased longevity.
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Affiliation(s)
- Isabel García-García
- Laboratory for Research in Neuroimaging (LREN), Department of Clinical Neurosciences, Centre for Research in Neurosciences, Lausanne University Hospital, University of Lausanne, Switzerland; Clinique la Prairie, Montreux, Switzerland
| | | | - Armand Aaron Cohen
- Department of Geriatrics and Rehabilitation, Hadassah University Medical Center Mount Scopus, Jerusalem, Israel
| | | | | | | | - Claude Pichard
- Nutrition Unit, University Hospital of Geneva, Geneva, Switzerland
| | | | | | | | - Bogdan Draganski
- Laboratory for Research in Neuroimaging (LREN), Department of Clinical Neurosciences, Centre for Research in Neurosciences, Lausanne University Hospital, University of Lausanne, Switzerland; Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany.
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Jonviea D C, Nusslé S, Bochud M, Gonseth-Nusslé S. Investigating the association of measures of epigenetic age with COVID-19 severity: evidence from secondary analyses of open access data. Swiss Med Wkly 2023; 153:40076. [PMID: 37155825 DOI: 10.57187/smw.2023.40076] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/10/2023] Open
Abstract
BACKGROUND Epigenetic modifications may contribute to inter-individual variation that is unexplainable by presently known risk factors for COVID-19 severity (e.g., age, excess weight, or other health conditions). Estimates of youth capital (YC) reflect the difference between an individual's epigenetic - or biological - age and chronological age, and may quantify abnormal aging due to lifestyle or other environmental exposures, providing insights that could inform risk-stratification for severe COVID-19 outcomes. This study aims to thereby a) assess the association between YC and epigenetic signatures of lifestyle exposures with COVID-19 severity, and b) to assess whether the inclusion of these signatures in addition to a signature of COVID-19 severity (EPICOVID) improved the prediction of COVID-19 severity. METHODS This study uses data from two publicly-available studies accessed via the Gene Expression Omnibus (GEO) platform (accession references: GSE168739 and GSE174818). The GSE168739 is a retrospective, cross-sectional study of 407 individuals with confirmed COVID-19 across 14 hospitals in Spain, while the GSE174818 sample is a single-center observational study of individuals admitted to the hospital for COVID-19 symptoms (n = 102). YC was estimated using the (a) Gonseth-Nusslé, (b) Horvath, (c) Hannum, and (d) PhenoAge estimates of epigenetic age. Study-specific definitions of COVID-19 severity were used, including hospitalization status (yes/no) (GSE168739) or vital status at the end of follow-up (alive/dead) (GSE174818). Logistic regression models were used to assess the association between YC, lifestyle exposures, and COVID-19 severity. RESULTS Higher YC as estimated using the Gonseth-Nusslé, Hannum and PhenoAge measures was associated with reduced odds of severe symptoms (OR = 0.95, 95% CI = 0.91-1.00; OR = 0.81, 95% CI = 0.75 - 0.86; and OR = 0.85, 95% CI = 0.81-0.88, respectively) (adjusting for chronological age and sex). In contrast, a one-unit increase in the epigenetic signature for alcohol consumption was associated with 13% increased odds of severe symptoms (OR = 1.13, 95% CI = 1.05-1.23). Compared to the model including only age, sex and the EPICOVID signature, the additional inclusion of PhenoAge and the epigenetic signature for alcohol consumption improved the prediction of COVID-19 severity (AUC = 0.94, 95% CI = 0.91-0.96 versus AUC = 0.95, 95% CI = 0.93-0.97; p = 0.01). In the GSE174818 sample, only PhenoAge was associated with COVID-related mortality (OR = 0.93, 95% CI = 0.87-1.00) (adjusting for age, sex, BMI and Charlson comorbidity index). CONCLUSIONS Epigenetic age is a potentially useful tool in primary prevention, particularly as an incentive towards lifestyle changes that target reducing the risk of severe COVID-19 symptoms. However, additional research is needed to establish potential causal pathways and the directionality of this effect.
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Affiliation(s)
- Chamberlain Jonviea D
- Department of Epidemiology and Health Systems (DESS), Center for Primary Care and Public Health (Unisanté), University of Lausanne, Lausanne, Switzerland
| | | | - Murielle Bochud
- Department of Epidemiology and Health Systems (DESS), Center for Primary Care and Public Health (Unisanté), University of Lausanne, Lausanne, Switzerland
| | - Semira Gonseth-Nusslé
- Department of Epidemiology and Health Systems (DESS), Center for Primary Care and Public Health (Unisanté), University of Lausanne, Lausanne, Switzerland
- Genknowme, Lausanne, Switzerland
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Chamberlain JD, Nusslé S, Chapatte L, Kinnaer C, Petrovic D, Pradervand S, Bochud M, Harris SE, Corley J, Cox SR, Gonseth Nusslé S. Blood DNA methylation signatures of lifestyle exposures: tobacco and alcohol consumption. Clin Epigenetics 2022; 14:155. [PMID: 36443762 PMCID: PMC9706852 DOI: 10.1186/s13148-022-01376-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Accepted: 11/15/2022] [Indexed: 11/30/2022] Open
Abstract
BACKGROUND Smoking and alcohol consumption may compromise health by way of epigenetic modifications. Epigenetic signatures of alcohol and tobacco consumption could provide insights into the reversibility of phenotypic changes incurred with differing levels of lifestyle exposures. This study describes and validates two novel epigenetic signatures of tobacco (EpiTob) and alcohol (EpiAlc) consumption and investigates their association with disease outcomes. METHODS The epigenetic signatures, EpiTob and EpiAlc, were developed using data from the Swiss Kidney Project on Genes in Hypertension (SKIPOGH) (N = 689). Epigenetic and phenotypic data available from the 1921 (N = 550) and 1936 (N = 1091) Lothian Birth Cohort (LBC) studies, and two publicly available datasets on GEO Accession (GSE50660, N = 464; and GSE110043, N = 94) were used to validate the signatures. A multivariable logistic regression model, adjusting for age and sex, was used to assess the association between self-reported tobacco or alcohol consumption and the respective epigenetic signature, as well as to estimate the association between CVD and epigenetic signatures. A Cox proportional hazard model was used to estimate the risk of mortality in association with the EpiTob and EpiAlc signatures. RESULTS The EpiTob signature was positively associated with self-reported tobacco consumption for current or never smokers with explained variance ranging from 0.49 (LBC1921) to 0.72 (LBC1936) (pseudo-R2). In the SKIPOGH, LBC1921 and LBC1936 cohorts, the epigenetic signature for alcohol consumption explained limited variance in association with self-reported alcohol status [i.e., non-drinker, moderate drinker, and heavy drinker] (pseudo-R2 = 0.05, 0.03 and 0.03, respectively), although this improved considerably when measuring self-reported alcohol consumption with standardized units consumed per week (SKIPOGH R2 = 0.21; LBC1921 R2 = 0.31; LBC1936 R2 = 0.41). Both signatures were associated with history of CVD in SKIPOGH and LBC1936, but not in LBC1921. The EpiTob signature was associated with increased risk of all-cause and lung-cancer specific mortality in the 1936 and 1921 LBC cohorts. CONCLUSIONS This study found the EpiTob and EpiAlc signatures to be well-correlated with self-reported exposure status and associated with long-term health outcomes. Epigenetic signatures of lifestyle exposures may reduce measurement issues and biases and could aid in risk stratification for informing early-stage targeted interventions.
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Affiliation(s)
- Jonviea D Chamberlain
- Department of Epidemiology and Health Systems (DESS), University Center for General Medicine and Public Health (Unisanté), Route de la Corniche 10, 1010, Lausanne, Switzerland.
| | | | | | | | - Dusan Petrovic
- Department of Epidemiology and Health Systems (DESS), University Center for General Medicine and Public Health (Unisanté), Route de la Corniche 10, 1010, Lausanne, Switzerland
| | - Sylvain Pradervand
- Vital-IT Group, Swiss Institute of Bioinformatics, Lausanne, Switzerland
- Genomic Technologies Facility, University of Lausanne, Lausanne, Switzerland
| | - Murielle Bochud
- Department of Epidemiology and Health Systems (DESS), University Center for General Medicine and Public Health (Unisanté), Route de la Corniche 10, 1010, Lausanne, Switzerland
| | - Sarah E Harris
- Lothian Birth Cohorts, Department of Psychology, University of Edinburgh, Edinburgh, UK
| | - Janie Corley
- Lothian Birth Cohorts, Department of Psychology, University of Edinburgh, Edinburgh, UK
| | - Simon R Cox
- Lothian Birth Cohorts, Department of Psychology, University of Edinburgh, Edinburgh, UK
| | - Semira Gonseth Nusslé
- Department of Epidemiology and Health Systems (DESS), University Center for General Medicine and Public Health (Unisanté), Route de la Corniche 10, 1010, Lausanne, Switzerland
- Genknowme, Epalinges, Switzerland
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Sturrock AM, Carlson SM, Wikert JD, Heyne T, Nusslé S, Merz JE, Sturrock HJW, Johnson RC. Unnatural selection of salmon life histories in a modified riverscape. Glob Chang Biol 2020; 26:1235-1247. [PMID: 31789453 PMCID: PMC7277499 DOI: 10.1111/gcb.14896] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2019] [Accepted: 09/29/2019] [Indexed: 05/26/2023]
Abstract
Altered river flows and fragmented habitats often simplify riverine communities and favor non-native fishes, but their influence on life-history expression and survival is less clear. Here, we quantified the expression and ultimate success of diverse salmon emigration behaviors in an anthropogenically altered California river system. We analyzed two decades of Chinook salmon monitoring data to explore the influence of regulated flows on juvenile emigration phenology, abundance, and recruitment. We then followed seven cohorts into adulthood using otolith (ear stone) chemical archives to identify patterns in time- and size-selective mortality along the migratory corridor. Suppressed winter flow cues were associated with delayed emigration timing, particularly in warm, dry years, which was also when selection against late migrants was the most extreme. Lower, less variable flows were also associated with reduced juvenile and adult production, highlighting the importance of streamflow for cohort success in these southernmost populations. While most juveniles emigrated from the natal stream as fry or smolts, the survivors were dominated by the rare few that left at intermediate sizes and times, coinciding with managed flows released before extreme summer temperatures. The consistent selection against early (small) and late (large) migrants counters prevailing ecological theory that predicts different traits to be favored under varying environmental conditions. Yet, even with this weakened portfolio, maintaining a broad distribution in migration traits still increased adult production and reduced variance. In years exhibiting large fry pulses, even marginal increases in their survival would have significantly boosted recruitment. However, management actions favoring any single phenotype could have negative evolutionary and demographic consequences, potentially reducing adaptability and population stability. To recover fish populations and support viable fisheries in a warming and increasingly unpredictable climate, coordinating flow and habitat management within and among watersheds will be critical to balance trait optimization versus diversification.
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Affiliation(s)
- Anna M. Sturrock
- Center for Watershed SciencesUniversity of California, DavisDavisCAUSA
| | - Stephanie M. Carlson
- Department of Environmental Science, Policy, and ManagementUniversity of California, BerkeleyBerkeleyCAUSA
| | | | - Tim Heyne
- California Department of Fish and WildlifeLa GrangeCAUSA
| | - Sébastien Nusslé
- Department of Environmental Science, Policy, and ManagementUniversity of California, BerkeleyBerkeleyCAUSA
| | - Joseph E. Merz
- Institute of Marine SciencesUniversity of California Santa CruzSanta CruzCAUSA
- Cramer Fish SciencesWest SacramentoCAUSA
| | - Hugh J. W. Sturrock
- Department of Epidemiology & BiostatisticsUniversity of California, San FranciscoSan FranciscoCAUSA
| | - Rachel C. Johnson
- Center for Watershed SciencesUniversity of California, DavisDavisCAUSA
- Fisheries Ecology DivisionSouthwest Fisheries Science CenterNational Marine Fisheries ServiceSanta CruzCAUSA
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Nusslé S, Matthews KR, Carlson SM. Patterns and dynamics of vegetation recovery following grazing cessation in the California golden trout habitat. Ecosphere 2017. [DOI: 10.1002/ecs2.1880] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Affiliation(s)
- Sébastien Nusslé
- Department of Environmental Science, Policy & Management University of California Berkeley California 94720 USA
| | - Kathleen R. Matthews
- USDA Emeritus Forest Service Pacific Southwest Research Station United States Department of Agriculture Albany California 94710 USA
| | - Stephanie M. Carlson
- Department of Environmental Science, Policy & Management University of California Berkeley California 94720 USA
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Gonseth S, Roy R, Houseman EA, de Smith AJ, Zhou M, Lee ST, Nusslé S, Singer AW, Wrensch MR, Metayer C, Wiemels JL. Periconceptional folate consumption is associated with neonatal DNA methylation modifications in neural crest regulatory and cancer development genes. Epigenetics 2016; 10:1166-76. [PMID: 26646725 DOI: 10.1080/15592294.2015.1117889] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
Abstract
Folate deficiency during early embryonic development constitutes a risk factor for neural tube defects and potentially for childhood leukemia via unknown mechanisms. We tested whether folate consumption during the 12 months prior to conception induced DNA methylation modifications at birth in healthy neonates with a genome-wide and agnostic approach. We hypothesized that DNA methylation in genes involved in neural tube development and/or cancer susceptibility would be affected by folate exposure. We retrospectively assessed folate exposure at the time of conception by food-frequency questionnaires administered to the mothers of 343 healthy newborns. We measured genome-wide DNA methylation from neonatal blood spots. We implemented a method based on bootstrap resampling to decrease false-positive findings. Folate was inversely associated with DNA methylation throughout the genome. Among the top folate-associated genes that were replicated in an independent Gambian study were TFAP2A, a gene critical for neural crest development, STX11, a gene implicated in acute myeloid leukemia, and CYS1, a candidate gene for cystic kidney disease. Reduced periconceptional folate intake was associated with increased methylation and, in turn, decreased gene expression at these 3 loci. The top folate-sensitive genes defined by their associated CpG sites were enriched for numerous transcription factors by Gene Set Enrichment Analysis, including those implicated in cancer development (e.g., MYC-associated zinc finger protein). The influence of estimated periconceptional folate intake on neonatal DNA methylation levels provides potential mechanistic insights into the role of this vitamin in the development of neural tube defects and childhood cancers.
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Affiliation(s)
- Semira Gonseth
- a Department of Epidemiology and Biostatistics ; Laboratory for Molecular Epidemiology; University of California ; San Francisco , CA , USA
| | - Ritu Roy
- b Computational Biology Core; HDF Comprehensive Cancer Center; University of California ; San Francisco , CA , USA
| | - E Andres Houseman
- c College of Public Health and Human Sciences; Oregon State University ; Corvallis , OR , USA
| | - Adam J de Smith
- a Department of Epidemiology and Biostatistics ; Laboratory for Molecular Epidemiology; University of California ; San Francisco , CA , USA
| | - Mi Zhou
- a Department of Epidemiology and Biostatistics ; Laboratory for Molecular Epidemiology; University of California ; San Francisco , CA , USA
| | - Seung-Tae Lee
- d Department of Laboratory Medicine ; Yonsei University College of Medicine ; Seoul , Republic of Korea
| | - Sébastien Nusslé
- e Department of Environmental Science ; Policy & Management; University of California ; Berkeley , CA , USA
| | - Amanda W Singer
- f School of Public Health; University of California ; Berkeley , CA , USA
| | - Margaret R Wrensch
- g Department of Neurological Surgery ; University of California ; San Francisco , CA , USA
| | - Catherine Metayer
- f School of Public Health; University of California ; Berkeley , CA , USA
| | - Joseph L Wiemels
- a Department of Epidemiology and Biostatistics ; Laboratory for Molecular Epidemiology; University of California ; San Francisco , CA , USA
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Nusslé S, Hendry AP, Carlson SM. When Should Harvest Evolution Matter to Population Dynamics? Trends Ecol Evol 2016; 31:500-502. [PMID: 27095380 DOI: 10.1016/j.tree.2016.04.001] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2016] [Revised: 03/15/2016] [Accepted: 04/11/2016] [Indexed: 10/21/2022]
Abstract
The potential for evolution to influence fishery sustainability remains a controversial topic. We highlight new modeling research from Dunlop et al. that explores when and how fisheries-induced evolution matters for population dynamics, while also emphasizing transient dynamics in population growth and life history-dependent responses that influence population stability and resiliency.
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Affiliation(s)
- Sébastien Nusslé
- Department of Environmental Science, Policy, and Management, University of California Berkeley, CA 94720-3114, USA.
| | - Andrew P Hendry
- Redpath Museum and Department of Biology, McGill University, Montreal, Quebec, Canada
| | - Stephanie M Carlson
- Department of Environmental Science, Policy, and Management, University of California Berkeley, CA 94720-3114, USA
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Nusslé S, Matthews KR, Carlson SM. Mediating Water Temperature Increases Due to Livestock and Global Change in High Elevation Meadow Streams of the Golden Trout Wilderness. PLoS One 2015; 10:e0142426. [PMID: 26565706 PMCID: PMC4643935 DOI: 10.1371/journal.pone.0142426] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2015] [Accepted: 10/21/2015] [Indexed: 11/21/2022] Open
Abstract
Rising temperatures due to climate change are pushing the thermal limits of many species, but how climate warming interacts with other anthropogenic disturbances such as land use remains poorly understood. To understand the interactive effects of climate warming and livestock grazing on water temperature in three high elevation meadow streams in the Golden Trout Wilderness, California, we measured riparian vegetation and monitored water temperature in three meadow streams between 2008 and 2013, including two “resting” meadows and one meadow that is partially grazed. All three meadows have been subject to grazing by cattle and sheep since the 1800s and their streams are home to the imperiled California golden trout (Oncorhynchus mykiss aguabonita). In 1991, a livestock exclosure was constructed in one of the meadows (Mulkey), leaving a portion of stream ungrazed to minimize the negative effects of cattle. In 2001, cattle were removed completely from two other meadows (Big Whitney and Ramshaw), which have been in a “resting” state since that time. Inside the livestock exclosure in Mulkey, we found that riverbank vegetation was both larger and denser than outside the exclosure where cattle were present, resulting in more shaded waters and cooler maximal temperatures inside the exclosure. In addition, between meadows comparisons showed that water temperatures were cooler in the ungrazed meadows compared to the grazed area in the partially grazed meadow. Finally, we found that predicted temperatures under different global warming scenarios were likely to be higher in presence of livestock grazing. Our results highlight that land use can interact with climate change to worsen the local thermal conditions for taxa on the edge and that protecting riparian vegetation is likely to increase the resiliency of these ecosystems to climate change.
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Affiliation(s)
- Sébastien Nusslé
- Department of Environmental Science, Policy & Management, University of California, Berkeley, California, United States of America
- * E-mail:
| | - Kathleen R. Matthews
- Forest Service Pacific Southwest Research Station, United States Department of Agriculture, Albany, California, United States of America
| | - Stephanie M. Carlson
- Department of Environmental Science, Policy & Management, University of California, Berkeley, California, United States of America
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Gonseth S, Roy R, Houseman EA, de Smith A, Zhou M, Lee ST, Nusslé S, Singer AW, Wrensch MR, Metayer C, Wiemels JL. Abstract 2763: Maternal folate intake at periconception and genome-wide DNA methylation modifications at birth in children. Cancer Res 2015. [DOI: 10.1158/1538-7445.am2015-2763] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Abstract
Introduction
Folate supplementation during pregnancy was previously associated with a lower risk of acute lymphoblastic childhood leukemia (ALL). Folate is involved in the “one-carbon” metabolic cycle necessary for shuttling methyl groups for DNA methylation. Given the observation that aberrant DNA methylation patterns are a characteristic of leukemic cells during ALL oncogenesis, we hypothesized that (1) low folate exposure during fetal development might modify the neonate's DNA genome-wide methylation pattern, and that (2) such a modified pattern can lead to ALL development. Here we investigate the first part of this hypothesis.
Methods
We analyzed healthy control participants of the California Childhood Leukemia case-control study. Participants’ peri-conception folate exposure was estimated from self-reported maternal folate intake and supplements, which was derived from a food frequency questionnaire on the diet in the year prior to pregnancy, as a surrogate for nutrient “environment” during the peri-conception period. DNA obtained from archived neonatal blood spots was purified, treated with bisulfite and assayed on the Illumina Infinium 450K genome-wide DNA methylation array. After removing cross-reacting probes, SNP-related and polymorphic CpGs, we analyzed the association of folate with methylation intensity of 319,265 CpGs in two independent datasets (n set 1 = 167 and n set 2 = 176). Models were adjusted for cell mixture, sex, gestational age, and race. We used a false discovery rate with random resampling to reduce the number of false-positive findings and we cross-validated the results between sets.
Results
Maternal folate intake was broadly associated with less child's DNA methylation: with a q-value <0.05, we found more than 122,000 CpG sites associated with folate intake in common in both sets. Because a fraction of these CpGs were sign discordant between sets, we constrained our analysis to the most significant CpGs, in order to avoid false positive associations. The three most significant CpGs found in common in both sets were negatively associated with folate. First, cg21039708 (chr.14) in the gene OTX2OS1 (q <10-14 in both sets) is implicated in facial and eye defects. Second, cg13499966 (chr.2) in the gene CYS1 (q <10-14 in both sets) is implicated in cystic kidney disease and biliary liver fibrosis. Third, cg22664307 (chr.6) in the gene STX11 (q <10-14 in both sets) is associated with lymphohistiocytosis.
Conclusions
This study was the first to investigate the association between maternal folate intake during the peri-conception period and DNA methylation at birth with a genome-wide approach and it found numerous associations throughout the genome. The relationships between folate-sensitive CpG sites and DNA methylation events critical to childhood leukemogenesis will be considered in our subsequent research.
Citation Format: Semira Gonseth, Ritu Roy, E. Andres Houseman, Adam de Smith, Mi Zhou, Seung-Tae Lee, Sébastien Nusslé, Amanda W. Singer, Margaret R. Wrensch, Catherine Metayer, Joseph L. Wiemels. Maternal folate intake at periconception and genome-wide DNA methylation modifications at birth in children. [abstract]. In: Proceedings of the 106th Annual Meeting of the American Association for Cancer Research; 2015 Apr 18-22; Philadelphia, PA. Philadelphia (PA): AACR; Cancer Res 2015;75(15 Suppl):Abstract nr 2763. doi:10.1158/1538-7445.AM2015-2763
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Affiliation(s)
- Semira Gonseth
- 1University of California, San Francisco, San Francisco, CA
| | - Ritu Roy
- 1University of California, San Francisco, San Francisco, CA
| | | | - Adam de Smith
- 1University of California, San Francisco, San Francisco, CA
| | - Mi Zhou
- 1University of California, San Francisco, San Francisco, CA
| | - Seung-Tae Lee
- 1University of California, San Francisco, San Francisco, CA
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Arlettaz R, Nusslé S, Baltic M, Vogel P, Palme R, Jenni-Eiermann S, Patthey P, Genoud M. Disturbance of wildlife by outdoor winter recreation: allostatic stress response and altered activity-energy budgets. Ecol Appl 2015; 25:1197-1212. [PMID: 26485949 DOI: 10.1890/14-1141.1] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Anthropogenic disturbance of wildlife is of growing conservation concern, but we lack comprehensive approaches of its multiple negative effects. We investigated several effects of disturbance by winter outdoor sports on free-ranging alpine Black Grouse by simultaneously measuring their physiological and behavioral responses. We experimentally flushed radio-tagged Black Grouse from their snow burrows, once a day, during several successive days, and quantified their stress hormone levels (corticosterone metabolites in feces [FCM] collected. from individual snow burrows). We also measured feeding time allocation (activity budgets reconstructed from radio-emitted signals) in response to anthropogenic disturbance. Finally, we estimated the related extra energy expenditure that may be incurred: based on activity budgets, energy expenditure was modeled from measures of metabolism obtained from captive birds subjected to different ambient temperatures. The pattern of FCM excretion indicated the existence of a funneling effect as predicted by the allostatic theory of stress: initial stress hormone concentrations showed a wide inter-individual variation, which decreased during experimental flushing. Individuals with low initial pre-flushing FCM values augmented their concentration, while individuals with high initial FCM values lowered it. Experimental disturbance resulted in an extension of feeding duration during the following evening foraging bout, confirming the prediction that Black Grouse must compensate for the extra energy expenditure elicited by human disturbance. Birds with low initial baseline FCM concentrations were those that spent more time foraging. These FCM excretion and foraging patterns suggest that birds with high initial FCM concentrations might have been experiencing a situation of allostatic overload. The energetic model provides quantitative estimates of extra energy expenditure. A longer exposure to ambient temperatures outside the shelter of snow burrows, following disturbance, could increase the daily energy expenditure by > 10%, depending principally on ambient temperature and duration of exposure. This study confirms the predictions of allostatic theory and, to the best of our knowledge, constitutes the first demonstration of a funneling effect. It further establishes that winter recreation activities incur costly allostatic behavioral and energetic adjustments, which call for the creation of winter refuge areas together with the implementation of visitor-steering measures for sensitive wildlife.
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Gonseth S, Nusslé S, Bovet P, Panese F, Wiemels JL. Excess winter deaths caused by cardiovascular diseases are associated with both mild winter temperature and socio-economic inequalities in the U.S. Int J Cardiol 2015; 187:642-4. [PMID: 25863741 DOI: 10.1016/j.ijcard.2015.03.412] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/27/2015] [Accepted: 03/28/2015] [Indexed: 11/17/2022]
Affiliation(s)
- Semira Gonseth
- University of California, San Francisco, Department of Epidemiology and Biostatistics, San Francisco, CA 94158, USA.
| | - Sébastien Nusslé
- University of California, Berkeley, Department of Environmental Science, Policy, and Management, Berkeley, CA 94720, USA
| | - Pascal Bovet
- University of Lausanne, Institute of Social and Preventive Medicine, 1010 Lausanne, Switzerland
| | - Francesco Panese
- University of Lausanne, Institute of History of Medicine and Public Health, 1007 Lausanne, Switzerland
| | - Joseph L Wiemels
- University of California, San Francisco, Department of Epidemiology and Biostatistics, San Francisco, CA 94158, USA
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Gonseth S, Locatelli I, Bize R, Nusslé S, Clair C, Pralong F, Cornuz J. Leptin and smoking cessation: secondary analyses of a randomized controlled trial assessing physical activity as an aid for smoking cessation. BMC Public Health 2014; 14:911. [PMID: 25187423 PMCID: PMC4165916 DOI: 10.1186/1471-2458-14-911] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2013] [Accepted: 08/29/2014] [Indexed: 11/10/2022] Open
Abstract
Background Smokers have a lower body weight compared to non-smokers. Smoking cessation is associated with weight gain in most cases. A hormonal mechanism of action might be implicated in weight variations related to smoking, and leptin might be implicated. We made secondary analyses of an RCT, with a hypothesis-free exploratory approach to study the dynamic of leptin following smoking cessation. Methods We measured serum leptin levels among 271 sedentary smokers willing to quit who participated in a randomized controlled trial assessing a 9-week moderate-intensity physical activity intervention as an aid for smoking cessation. We adjusted leptin for body fat levels. We performed linear regressions to test for an association between leptin levels and the study group over time. Results One year after smoking cessation, the mean serum leptin change was +3.23 mg/l (SD 4.89) in the control group and +1.25 mg/l (SD 4.86) in the intervention group (p of the difference < 0.05). When adjusted for body fat levels, leptin was higher in the control group than in the intervention group (p of the difference < 0.01). The mean weight gain was +2.91 (SD 6.66) Kg in the intervention and +3.33 (SD 4.47) Kg in the control groups, respectively (p not significant). Conclusions Serum leptin levels significantly increased after smoking cessation, in spite of substantial weight gain. The leptin dynamic might be different in chronic tobacco users who quit smoking, and physical activity might impact the dynamic of leptin in such a situation. Clinical trial registration number NCT00521391 Electronic supplementary material The online version of this article (doi:10.1186/1471-2458-14-911) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Semira Gonseth
- Department of Epidemiology and Biostatistics, University of California San Francisco, 1450 3rd Street, San Francisco, CA, USA.
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13
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Laugen AT, Engelhard GH, Whitlock R, Arlinghaus R, Dankel DJ, Dunlop ES, Eikeset AM, Enberg K, Jørgensen C, Matsumura S, Nusslé S, Urbach D, Baulier L, Boukal DS, Ernande B, Johnston FD, Mollet F, Pardoe H, Therkildsen NO, Uusi-Heikkilä S, Vainikka A, Heino M, Rijnsdorp AD, Dieckmann U. Evolutionary impact assessment: accounting for evolutionary consequences of fishing in an ecosystem approach to fisheries management. Fish Fish (Oxf) 2014; 15:65-96. [PMID: 26430388 PMCID: PMC4579828 DOI: 10.1111/faf.12007] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2011] [Accepted: 07/30/2012] [Indexed: 05/26/2023]
Abstract
Managing fisheries resources to maintain healthy ecosystems is one of the main goals of the ecosystem approach to fisheries (EAF). While a number of international treaties call for the implementation of EAF, there are still gaps in the underlying methodology. One aspect that has received substantial scientific attention recently is fisheries-induced evolution (FIE). Increasing evidence indicates that intensive fishing has the potential to exert strong directional selection on life-history traits, behaviour, physiology, and morphology of exploited fish. Of particular concern is that reversing evolutionary responses to fishing can be much more difficult than reversing demographic or phenotypically plastic responses. Furthermore, like climate change, multiple agents cause FIE, with effects accumulating over time. Consequently, FIE may alter the utility derived from fish stocks, which in turn can modify the monetary value living aquatic resources provide to society. Quantifying and predicting the evolutionary effects of fishing is therefore important for both ecological and economic reasons. An important reason this is not happening is the lack of an appropriate assessment framework. We therefore describe the evolutionary impact assessment (EvoIA) as a structured approach for assessing the evolutionary consequences of fishing and evaluating the predicted evolutionary outcomes of alternative management options. EvoIA can contribute to EAF by clarifying how evolution may alter stock properties and ecological relations, support the precautionary approach to fisheries management by addressing a previously overlooked source of uncertainty and risk, and thus contribute to sustainable fisheries.
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Affiliation(s)
- Ane T Laugen
- Swedish University of Agricultural Sciences, Department of Ecology,Box 7044, SE-75643, Uppsala, Sweden
- IFREMER, Laboratoire Ressources Halieutiques,Avenue du Général de Gaulle, F-14520, Port-en-Bessin, France
| | - Georg H Engelhard
- Centre for Environment, Fisheries & Aquaculture Science (Cefas),Pakefield Road, Lowestoft, NR33 0HT, UK
| | - Rebecca Whitlock
- Evolution and Ecology Program, International Institute for Applied Systems Analysis (IIASA),Schlossplatz 1, A-2361, Laxenburg, Austria
- Hopkins Marine Station, Stanford University,120 Oceanview Blvd, Pacific Grove, CA, 93950, California, USA
- Finnish Game and Fisheries Research Institute,Itäinen Pitkäkatu 3, FI-20520, Turku, Finland
| | - Robert Arlinghaus
- Department of Biology and Ecology of Fishes, Leibniz-Institute of Freshwater Ecology and Inland Fisheries,Müggelseedamm 310, Berlin, 12587, Germany
- Department for Crop and Animal Sciences, Faculty of Agriculture and Horticulture, Humboldt-Universität zu Berlin,Philippstrasse 13, Haus 7, 10115, Berlin, Germany
| | - Dorothy J Dankel
- Institute of Marine Research,PO Box 1870, Nordnes, NO-5817, Bergen, Norway
| | - Erin S Dunlop
- Institute of Marine Research,PO Box 1870, Nordnes, NO-5817, Bergen, Norway
- EvoFish Research Group, Department of Biology, University of Bergen,Box 7803, NO-5020, Bergen, Norway
- Aquatic Research and Development Section, Ontario Ministry of Natural Resources,300 Water Street, PO Box 7000, Peterborough, ON, Canada, K9J 8M5
| | - Anne M Eikeset
- Department of Biology, Centre for Ecological and Evolutionary Synthesis (CEES), University of Oslo,PO Box 1066, Blindern, NO-0316, Oslo, Norway
| | - Katja Enberg
- Institute of Marine Research,PO Box 1870, Nordnes, NO-5817, Bergen, Norway
- EvoFish Research Group, Department of Biology, University of Bergen,Box 7803, NO-5020, Bergen, Norway
| | - Christian Jørgensen
- EvoFish Research Group, Department of Biology, University of Bergen,Box 7803, NO-5020, Bergen, Norway
- Computational Ecology Unit, Uni Research,PO Box 7810, NO-5020, Bergen, Norway
| | - Shuichi Matsumura
- Evolution and Ecology Program, International Institute for Applied Systems Analysis (IIASA),Schlossplatz 1, A-2361, Laxenburg, Austria
- Department of Biology and Ecology of Fishes, Leibniz-Institute of Freshwater Ecology and Inland Fisheries,Müggelseedamm 310, Berlin, 12587, Germany
- Faculty of Applied Biological Sciences, Gifu University,Yanagido 1-1, Gifu, 501-1193, Japan
| | - Sébastien Nusslé
- Department of Ecology and Evolution, University of Lausanne,Biophore, CH-1015, Lausanne, Switzerland
- Conservation Biology, Bern University,Erlachstrasse 9a, CH-3012, Bern, Switzerland
| | - Davnah Urbach
- Evolution and Ecology Program, International Institute for Applied Systems Analysis (IIASA),Schlossplatz 1, A-2361, Laxenburg, Austria
- Department of Biological Sciences, Dartmouth College, The Class of 1978 Life Sciences Center,78 College Street, Hanover, NH, 03755, USA
| | - Loїc Baulier
- Institute of Marine Research,PO Box 1870, Nordnes, NO-5817, Bergen, Norway
- EvoFish Research Group, Department of Biology, University of Bergen,Box 7803, NO-5020, Bergen, Norway
- Fisheries and Aquatic Sciences Center, Agrocampus Ouest Centre de Rennes,65 rue de Saint Brieuc, CS 84215, F-35042, Rennes Cedex, France
| | - David S Boukal
- Institute of Marine Research,PO Box 1870, Nordnes, NO-5817, Bergen, Norway
- EvoFish Research Group, Department of Biology, University of Bergen,Box 7803, NO-5020, Bergen, Norway
- Department of Ecosystems Biology, Faculty of Science, University of South Bohemia,Branisovska 31, CZ-37005, České Budějovice, Czech Republic
| | - Bruno Ernande
- Evolution and Ecology Program, International Institute for Applied Systems Analysis (IIASA),Schlossplatz 1, A-2361, Laxenburg, Austria
- IFREMER, Laboratoire Ressources Halieutiques,150 quai Gambetta, BP 699, F-62321, Boulogne-sur-Mer, France
| | - Fiona D Johnston
- Evolution and Ecology Program, International Institute for Applied Systems Analysis (IIASA),Schlossplatz 1, A-2361, Laxenburg, Austria
- Department of Biology and Ecology of Fishes, Leibniz-Institute of Freshwater Ecology and Inland Fisheries,Müggelseedamm 310, Berlin, 12587, Germany
- Department for Crop and Animal Sciences, Faculty of Agriculture and Horticulture, Humboldt-Universität zu Berlin,Philippstrasse 13, Haus 7, 10115, Berlin, Germany
| | - Fabian Mollet
- Evolution and Ecology Program, International Institute for Applied Systems Analysis (IIASA),Schlossplatz 1, A-2361, Laxenburg, Austria
- Wageningen IMARES,Postbus 68, 1970, AB IJmuiden, The Netherlands
| | - Heidi Pardoe
- Faculty of Life and Environmental Sciences, MARICE, University of Iceland,Askja, Sturlugata 7, 101, Reykjavik, Iceland
| | - Nina O Therkildsen
- Section for Population Ecology and Genetics, National Institute of Aquatic Resources, Technical University of Denmark,Vejlsøvej 39, DK-8600, Silkeborg, Denmark
| | - Silva Uusi-Heikkilä
- Department of Biology and Ecology of Fishes, Leibniz-Institute of Freshwater Ecology and Inland Fisheries,Müggelseedamm 310, Berlin, 12587, Germany
- Division of Genetics and Physiology, Department of Biology, University of Turku,Pharmacity, FI-20014, Turku, Finland
| | - Anssi Vainikka
- Department of Biology, University of Oulu,PO Box 3000, FI-90014, Oulu, Finland
- Swedish Board of Fisheries, Institute of Coastal Research,PO Box 109, SE-74222, Öregrund, Sweden
| | - Mikko Heino
- Evolution and Ecology Program, International Institute for Applied Systems Analysis (IIASA),Schlossplatz 1, A-2361, Laxenburg, Austria
- Institute of Marine Research,PO Box 1870, Nordnes, NO-5817, Bergen, Norway
- EvoFish Research Group, Department of Biology, University of Bergen,Box 7803, NO-5020, Bergen, Norway
| | - Adriaan D Rijnsdorp
- Wageningen IMARES,Postbus 68, 1970, AB IJmuiden, The Netherlands
- Aquaculture and Fisheries Group, Department of Animal Sciences, Wageningen University and Research Centre,PO Box 338, 6700, Wageningen, The Netherlands
| | - Ulf Dieckmann
- Evolution and Ecology Program, International Institute for Applied Systems Analysis (IIASA),Schlossplatz 1, A-2361, Laxenburg, Austria
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14
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Pompini M, Buser AM, Thali MR, Von Siebenthal BA, Nusslé S, Guduff S, Wedekind C. Temperature-induced sex reversal is not responsible for sex-ratio distortions in grayling Thymallus thymallus or brown trout Salmo trutta. J Fish Biol 2013; 83:404-411. [PMID: 23902314 DOI: 10.1111/jfb.12174] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2013] [Accepted: 05/15/2013] [Indexed: 06/02/2023]
Abstract
On the basis of the experiments carried out over various years, it was concluded that (1) grayling Thymallus thymallus and brown trout Salmo trutta are resistant to temperature-induced sex reversal at ecologically relevant temperatures, (2) environmental sex reversal is unlikely to cause the persistent sex ratio distortion observed in at least one of the study populations and (3) sex-specific tolerance of temperature-related stress may be the cause of distorted sex ratios in populations of T. thymallus or S. trutta.
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Affiliation(s)
- M Pompini
- Department of Ecology and Evolution, University of Lausanne, Biophore, 1015 Lausanne, Switzerland
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15
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Nusslé S, Bornand CN, Wedekind C. Fishery-induced selection on an Alpine whitefish: quantifying genetic and environmental effects on individual growth rate. Evol Appl 2008; 2:200-8. [PMID: 25567861 PMCID: PMC3352367 DOI: 10.1111/j.1752-4571.2008.00054.x] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2008] [Accepted: 11/20/2008] [Indexed: 11/26/2022] Open
Abstract
Size-selective fishing, environmental changes and reproductive strategies are expected to affect life-history traits such as the individual growth rate. The relative contribution of these factors is not clear, particularly whether size-selective fishing can have a substantial impact on the genetics and hence on the evolution of individual growth rates in wild populations. We analysed a 25-year monitoring survey of an isolated population of the Alpine whitefish Coregonus palaea. We determined the selection differentials on growth rate, the actual change of growth rate over time and indicators of reproductive strategies that may potentially change over time. The selection differential can be reliably estimated in our study population because almost all the fish are harvested within their first years of life, i.e. few fish escape fishing mortality. We found a marked decline in average adult growth rate over the 25 years and a significant selection differential for adult growth, but no evidence for any linear change in reproductive strategies over time. Assuming that the heritability of growth in this whitefish corresponds to what was found in other salmonids, about a third of the observed decline in growth rate would be linked to fishery-induced evolution. Size-selective fishing seems to affect substantially the genetics of individual growth in our study population.
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Affiliation(s)
- Sébastien Nusslé
- Department of Ecology and Evolution, University of Lausanne Lausanne, Switzerland
| | - Christophe N Bornand
- Department of Ecology and Evolution, University of Lausanne Lausanne, Switzerland
| | - Claus Wedekind
- Department of Ecology and Evolution, University of Lausanne Lausanne, Switzerland
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16
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Wedekind C, Jacob A, Evanno G, Nusslé S, Müller R. Viability of brown trout embryos positively linked to melanin-based but negatively to carotenoid-based colours of their fathers. Proc Biol Sci 2008; 275:1737-44. [PMID: 18445560 PMCID: PMC2453293 DOI: 10.1098/rspb.2008.0072] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Abstract
‘Good-genes’ models of sexual selection predict significant additive genetic variation for fitness-correlated traits within populations to be revealed by phenotypic traits. To test this prediction, we sampled brown trout (Salmo trutta) from their natural spawning place, analysed their carotenoid-based red and melanin-based dark skin colours and tested whether these colours can be used to predict offspring viability. We produced half-sib families by in vitro fertilization, reared the resulting embryos under standardized conditions, released the hatchlings into a streamlet and identified the surviving juveniles 20 months later with microsatellite markers. Embryo viability was revealed by the sires' dark pigmentation: darker males sired more viable offspring. However, the sires' red coloration correlated negatively with embryo survival. Our study demonstrates that genetic variation for fitness-correlated traits is revealed by male colour traits in our study population, but contrary to predictions from other studies, intense red colours do not signal good genes.
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Affiliation(s)
- Claus Wedekind
- Department of Ecology and Evolution, Biophore, University of Lausanne, 1015 Lausanne, Switzerland.
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17
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Parapanov RN, Nusslé S, Crausaz M, Senn A, Hausser J, Vogel P. Testis size, sperm characteristics and testosterone concentrations in four species of shrews (Mammalia, Soricidae). Anim Reprod Sci 2008; 114:269-78. [PMID: 18980814 DOI: 10.1016/j.anireprosci.2008.09.013] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2008] [Revised: 09/08/2008] [Accepted: 09/23/2008] [Indexed: 11/19/2022]
Abstract
The aim of this study was to establish and compare the sperm characteristics in four shrew species in the context of the sperm competition hypothesis. As expected, the large relative testis size in promiscuous species was associated with a high number of cauda epididymal spermatozoa and a high concentration of circulating testosterone. In addition, in Sorex and Neomys, species with high intensity of sperm competition, the spermatozoa stored in cauda epididymis were characterized by high percentage of progressive motility whereas in Crocidura and Suncus, the cauda epididymal spermatozoa were motile but with very low percentage of progressive motility. This capability is achieved only following the passage through the vas gland, a specialized region for sperm storage located along the vas deferens in these shrew species. The hypothesis that sperm competition is positively correlated with spermatozoa length could not be confirmed. In Crocidura and Suncus, the total sperm length is increased by the large sperm head due to a big acrosome. This trait, specific to the subfamily Crocidurinae, may results from a selective pressure independent of the context of sperm competition, related to a specific, but as yet unclear role, for the acrosome during the fertilization.
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Affiliation(s)
- R N Parapanov
- Department of Ecology and Evolution, University of Lausanne, CH-1015 Lausanne, Switzerland.
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18
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Parapanov R, Nusslé S, Hausser J, Vogel P. Relationships of basal metabolic rate, relative testis size and cycle length of spermatogenesis in shrews (Mammalia, Soricidae). Reprod Fertil Dev 2008; 20:431-9. [DOI: 10.1071/rd07207] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2007] [Accepted: 01/20/2008] [Indexed: 11/23/2022] Open
Abstract
The aim of the present study was to determinate the cycle length of spermatogenesis in three species of shrew, Suncus murinus, Sorex coronatus and Sorex minutus, and to assess the relative influence of variation in basal metabolic rate (BMR) and mating system (level of sperm competition) on the observed rate of spermatogenesis, including data of shrew species studied before (Sorex araneus, Crocidura russula and Neomys fodiens). The dynamics of sperm production were determined by tracing 5-bromodeoxyuridine in the DNA of germ cells. As a continuous scaling of mating systems is not evident, the level of sperm competition was evaluated by the significantly correlated relative testis size (RTS). The cycle durations estimated by linear regression were 14.3 days (RTS 0.3%) in Suncus murinus, 9.0 days (RTS 0.5%) in Sorex coronatus and 8.5 days (RTS 2.8%) in Sorex minutus. In regression and multiple regression analyses including all six studied species of shrew, cycle length was significantly correlated with BMR (r2 = 0.73) and RTS (r2 = 0.77). Sperm competition as an ultimate factor obviously leads to a reduction in the time of spermatogenesis in order to increase sperm production. BMR may act in the same way, independently or as a proximate factor, revealed by the covariation, but other factors (related to testes size and thus to mating system) may also be involved.
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19
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Jacob A, Nusslé S, Britschgi A, Evanno G, Müller R, Wedekind C. Male dominance linked to size and age, but not to 'good genes' in brown trout (Salmo trutta). BMC Evol Biol 2007; 7:207. [PMID: 17974038 PMCID: PMC2222247 DOI: 10.1186/1471-2148-7-207] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2007] [Accepted: 11/01/2007] [Indexed: 11/14/2022] Open
Abstract
Background Males that are successful in intra-sexual competition are often assumed to be of superior quality. In the mating system of most salmonid species, intensive dominance fights are common and the winners monopolise most mates and sire most offspring. We drew a random sample of mature male brown trout (Salmo trutta) from two wild populations and determined their dominance hierarchy or traits linked to dominance. The fish were then stripped and their sperm was used for in vitro fertilisations in two full-factorial breeding designs. We recorded embryo viability until hatching in both experiments, and juvenile survival during 20 months after release into a natural streamlet in the second experiment. Since offspring of brown trout get only genes from their fathers, we used offspring survival as a quality measure to test (i) whether males differ in their genetic quality, and if so, (ii) whether dominance or traits linked to dominance reveal 'good genes'. Results We found significant additive genetic variance on embryo survival, i.e. males differed in their genetic quality. Older, heavier and larger males were more successful in intra-sexual selection. However, neither dominance nor dominance indicators like body length, weight or age were significantly linked to genetic quality measured as embryo or juvenile survival. Conclusion We found no evidence that females can improve their offspring's genetic viability by mating with large and dominant males. If there still were advantages of mating with dominant males, they may be linked to non-genetic benefits or to genetic advantages that are context dependent and therefore possibly not revealed under our experimental conditions – even if we found significant additive genetic variation for embryo viability under such conditions.
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Affiliation(s)
- Alain Jacob
- Department of Ecology and Evolution, University of Lausanne, Biophore, 1015 Lausanne, Switzerland.
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20
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Parapanov R, Nusslé S, Hausser J, Vogel P. Histological description of seminiferous epithelium and cycle length of spermatogenesis in the water shrew Neomys fodiens (Mammalia: Soricidae). Anim Reprod Sci 2007; 107:148-60. [PMID: 17629637 DOI: 10.1016/j.anireprosci.2007.06.012] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2007] [Revised: 05/22/2007] [Accepted: 06/01/2007] [Indexed: 11/19/2022]
Abstract
Recently, we examined the spermatogenesis cycle length in two shrews species, Sorex araneus characterized by a very high metabolic rate and a polyandric mating system (sperm competition) resulting in a short cycle and Crocidura russula characterized by a much lower metabolic rate and a monogamous mating system showing a longer cycle. In this study, we investigated the spermatogenesis cycle in Neomys fodiens showing an intermediate metabolic rate. We described the stages of seminiferous epithelium according to the spermatid morphology method and we calculated the cycle length of spermatogenesis using incorporation of 5-bromodeoxyuridine into DNA of the germ cells. Twelve males were injected intraperitoneally with 5-bromodeoxyuridine, and the testes were collected. For cycle length determination, we applied a recently developed statistical method. The calculated cycle length is 8.69 days and the total duration of spermatogenesis based on 4.5 cycles is approximately 39.1 days, intermediate between the duration of spermatogenesis of S. araneus (37.6 days) and C. russula (54.5 days) and therefore congruent with both the metabolic rate hypothesis and the sperm competition hypothesis. Relative testes size of 1.4% of body mass indicates a promiscuous mating system.
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Affiliation(s)
- Roumen Parapanov
- Department of Ecology and Evolution, University of Lausanne, CH-1015 Lausanne, Switzerland.
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21
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Parapanov R, Nusslé S, Vogel P. Cycle Length of Spermatogenesis in Shrews (Mammalia: Soricidae) with High and Low Metabolic Rates and Different Mating Systems1. Biol Reprod 2007; 76:833-40. [PMID: 17267697 DOI: 10.1095/biolreprod.106.058073] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022] Open
Abstract
The aim of the present study was to establish and compare the durations of the seminiferous epithelium cycles of the common shrew Sorex araneus, which is characterized by a high metabolic rate and multiple paternity, and the greater white-toothed shrew Crocidura russula, which is characterized by a low metabolic rate and a monogamous mating system. Twelve S. araneus males and fifteen C. russula males were injected intraperitoneally with 5-bromodeoxyuridine, and the testes were collected. For cycle length determinations, we applied the classical method of estimation and linear regression as a new method. With regard to variance, and even with a relatively small sample size, the new method seems to be more precise. In addition, the regression method allows the inference of information for every animal tested, enabling comparisons of different factors with cycle lengths. Our results show that not only increased testis size leads to increased sperm production, but it also reduces the duration of spermatogenesis. The calculated cycle lengths were 8.35 days for S. araneus and 12.12 days for C. russula. The data obtained in the present study provide the basis for future investigations into the effects of metabolic rate and mating systems on the speed of spermatogenesis.
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Affiliation(s)
- Roumen Parapanov
- Department of Ecology and Evolution, University of Lausanne, CH-1015 Lausanne, Switzerland.
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22
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Giorgi MS, Arlettaz R, Guillaume F, Nusslé S, Ossola C, Vogel P, Christe P. Causal mechanisms underlying host specificity in bat ectoparasites. Oecologia 2004; 138:648-54. [PMID: 14714175 DOI: 10.1007/s00442-003-1475-1] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2003] [Accepted: 11/27/2003] [Indexed: 11/25/2022]
Abstract
In parasites, host specificity may result either from restricted dispersal capacity or from fixed coevolutionary host-parasite adaptations. Knowledge of those proximal mechanisms leading to particular host specificity is fundamental to understand host-parasite interactions and potential coevolution of parasites and hosts. The relative importance of these two mechanisms was quantified through infection and cross-infection experiments using mites and bats as a model. Monospecific pools of parasitic mites (Spinturnix myoti and S. andegavinus) were subjected either to individual bats belonging to their traditional, native bat host species, or to another substitute host species within the same bat genus (Myotis). The two parasite species reacted differently to these treatments. S. myoti exhibited a clear preference for, and had a higher fitness on, its native host, Myotis myotis. In contrast, S. andegavinus showed no host choice, although its fitness was higher on its native host M. daubentoni. The causal mechanisms mediating host specificity can apparently differ within closely related host-parasite systems.
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Affiliation(s)
- Maud S Giorgi
- Department of Ecology and Evolution, University of Lausanne, Biology Building, 1015 Lausanne, Switzerland.
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