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Oliva M, Heirali A, Watson G, Rooney AM, Cochrane K, Jennings S, Taylor R, Xu M, Hosni A, Hope A, Bratman SV, Chepeha D, Weinreb I, Perez-Ordonez B, Nin RM, Waldron J, Xu W, Hansen AR, Siu LL, Coburn B, Spreafico A. Prospective manipulation of the gut microbiome with microbial ecosystem therapeutic 4 (MET4) in HPV-related locoregionally-advanced oropharyngeal cancer squamous cell carcinoma (LA-OPSCC) undergoing primary chemoradiation: ROMA2 study. Br J Cancer 2024:10.1038/s41416-024-02701-y. [PMID: 38714747 DOI: 10.1038/s41416-024-02701-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2023] [Revised: 04/12/2024] [Accepted: 04/17/2024] [Indexed: 05/10/2024] Open
Abstract
BACKGROUND Gut microbiome modulation to boost antitumor immune responses is under investigation. METHODS ROMA-2 evaluated the microbial ecosystem therapeutic (MET)-4 oral consortia, a mixture of cultured human stool-derived immune-responsiveness associated bacteria, given with chemoradiation (CRT) in HPV-related oropharyngeal cancer patients. Co-primary endpoints were safety and changes in stool cumulative MET-4 taxa relative abundance (RA) by 16SRNA sequencing. Stools and plasma were collected pre/post-MET-4 intervention for microbiome and metabolome analysis. RESULTS Twenty-nine patients received ≥1 dose of MET-4 and were evaluable for safety: drug-related adverse events (AEs) occurred in 13/29 patients: all grade 1-2 except one grade 3 (diarrhea). MET-4 was discontinued early in 7/29 patients due to CRT-induced toxicity, and in 1/29 due to MET-4 AEs. Twenty patients were evaluable for ecological endpoints: there was no increase in stool MET-4 RA post-intervention but trended to increase in stage III patients (p = 0.06). MET-4 RA was higher in stage III vs I-II patients at week 4 (p = 0.03) and 2-month follow-up (p = 0.01), which correlated with changes in plasma and stool targeted metabolomics. CONCLUSIONS ROMA-2 did not meet its primary ecologic endpoint, as no engraftment was observed in the overall cohort. Exploratory findings of engraftment in stage III patients warrants further investigation of microbiome interventions in this subgroup.
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Affiliation(s)
- Marc Oliva
- Department of Medical Oncology, Catalan Institute of Oncology, Barcelona, Spain
- Division of Medical Oncology and Haematology, Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada
| | - Alya Heirali
- Toronto General Hospital Research Institute, University Health Network, Toronto, ON, Canada
| | - Geoffrey Watson
- Division of Medical Oncology and Haematology, Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada
| | - Ashley M Rooney
- Toronto General Hospital Research Institute, University Health Network, Toronto, ON, Canada
| | | | - Sarah Jennings
- Division of Medical Oncology and Haematology, Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada
| | - Rachel Taylor
- Division of Medical Oncology and Haematology, Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada
| | - Minge Xu
- Division of Medical Oncology and Haematology, Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada
| | - Ali Hosni
- Department of Radiation Oncology, University of Toronto; Radiation Medicine Program, Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada
| | - Andrew Hope
- Department of Radiation Oncology, University of Toronto; Radiation Medicine Program, Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada
| | - Scott V Bratman
- Department of Radiation Oncology, University of Toronto; Radiation Medicine Program, Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada
| | - Douglas Chepeha
- Department of Otolaryngology- Head & Neck Surgery/Surgical Oncology, Princess Margaret Cancer Centre, University of Toronto, Toronto, ON, Canada
| | - Ilan Weinreb
- Department of Pathology, Princess Margaret Cancer Centre, University of Toronto, Toronto, ON, Canada
| | - Bayardo Perez-Ordonez
- Department of Pathology, Princess Margaret Cancer Centre, University of Toronto, Toronto, ON, Canada
| | - Ricard Mesia Nin
- Department of Medical Oncology, Catalan Institute of Oncology, Barcelona, Spain
| | - John Waldron
- Department of Radiation Oncology, University of Toronto; Radiation Medicine Program, Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada
| | - Wei Xu
- Biostatistics Department, Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada
| | - Aaron R Hansen
- Division of Medical Oncology and Haematology, Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada
| | - Lillian L Siu
- Division of Medical Oncology and Haematology, Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada
| | - Bryan Coburn
- Toronto General Hospital Research Institute, University Health Network, Toronto, ON, Canada.
- Department of Medicine, Division of Infectious Diseases, University of Toronto, Toronto, ON, Canada.
| | - Anna Spreafico
- Division of Medical Oncology and Haematology, Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada.
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Hernando‐Calvo A, Malone E, Day D, Prawira A, Weinreb I, Yang SYC, Wong H, Rodriguez A, Jennings S, Eliason A, Wang L, Spreafico A, Siu LL, Hansen AR. Selinexor for the treatment of recurrent or metastatic salivary gland tumors: Results from the GEMS-001 clinical trial. Cancer Med 2023; 12:20299-20310. [PMID: 37818869 PMCID: PMC10652322 DOI: 10.1002/cam4.6589] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Revised: 09/09/2023] [Accepted: 09/12/2023] [Indexed: 10/13/2023] Open
Abstract
OBJECTIVES We aimed to evaluate the activity of selinexor, an oral selective inhibitor of nuclear export, in patients with recurrent or metastatic salivary gland tumors (SGT). METHODS GEMS-001 is an open-label Phase 2 study for patients with recurrent or metastatic SGT with two parts. In Part 1 of the protocol, patients had tumor samples profiled with targeted next generation sequencing as well as immunohistochemistry for androgen receptor, HER-2 and ALK. For Part 2, patients with no targeted therapies available were eligible to receive selinexor 60 mg given twice weekly every 28 days. The primary endpoint was objective response rate. Secondary endpoints included progression-free survival (PFS) and prevalence of druggable alterations across SGT. RESULTS One hundred patients were enrolled in GEMS-001 and underwent genomic and immunohistochemistry profiling. A total of 21 patients who lacked available matched therapies were treated with selinexor. SGT subtypes (WHO classification) included adenoid cystic carcinoma (n = 10), salivary duct carcinoma (n = 3), acinic cell carcinoma (n = 2), myoepithelial carcinoma (n = 2), carcinoma ex pleomorphic adenoma (n = 2) and other (n = 2). Of 18 evaluable patients, stable disease (SD) was observed in 17 patients (94%) (SD ≥6 months in 7 patients (39%)). However, no objective responses were observed. The median PFS was 4.9 months (95% confidence interval, 3.4-10). The most common treatment-related Grade 1-2 adverse events were nausea [17 patients (81%)], fatigue [16 patients (76%)], and dysgeusia [12 patients (57%)]. Most common treatment-related Grade 3-4 adverse events were hyponatremia [3 patients (14%)], neutrophil count decrease [3 patients (14%)] and cataracts [2 patients (10%)]. No treatment-related deaths were observed. CONCLUSIONS Although tumor reduction was observed across participants, single agent selinexor anti-tumor activity was limited.
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Affiliation(s)
- Alberto Hernando‐Calvo
- Division of Medical Oncology and Hematology, Princess Margaret Cancer Centre. Department of MedicineUniversity of TorontoTorontoOntarioCanada
| | - Eoghan Malone
- Division of Medical Oncology and Hematology, Princess Margaret Cancer Centre. Department of MedicineUniversity of TorontoTorontoOntarioCanada
| | - Daphne Day
- Division of Medical Oncology and Hematology, Princess Margaret Cancer Centre. Department of MedicineUniversity of TorontoTorontoOntarioCanada
| | - Amy Prawira
- Division of Medical Oncology and Hematology, Princess Margaret Cancer Centre. Department of MedicineUniversity of TorontoTorontoOntarioCanada
| | - Ilan Weinreb
- Princess Margaret Cancer CentreTorontoOntarioCanada
| | | | - Horace Wong
- Princess Margaret Cancer CentreTorontoOntarioCanada
| | | | | | | | - Lisa Wang
- Princess Margaret Cancer CentreTorontoOntarioCanada
| | - Anna Spreafico
- Division of Medical Oncology and Hematology, Princess Margaret Cancer Centre. Department of MedicineUniversity of TorontoTorontoOntarioCanada
| | - Lillian L. Siu
- Division of Medical Oncology and Hematology, Princess Margaret Cancer Centre. Department of MedicineUniversity of TorontoTorontoOntarioCanada
| | - Aaron R. Hansen
- Division of Medical Oncology and Hematology, Princess Margaret Cancer Centre. Department of MedicineUniversity of TorontoTorontoOntarioCanada
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Jennings S, Heinson G, Hasterok D, Kay B. Magnetotelluric support for edge-driven convection and shear-driven upwelling in the Newer Volcanics Province. Sci Rep 2023; 13:5543. [PMID: 37016012 PMCID: PMC10073071 DOI: 10.1038/s41598-023-32403-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2022] [Accepted: 03/27/2023] [Indexed: 04/06/2023] Open
Abstract
Intraplate volcanic provinces present significant natural hazards to many populated regions globally but their origins are poorly understood. Though hypotheses involving mantle plumes are predominant, the Newer Volcanics Province of southeast Australia-a relatively young (< 4.5 Ma), EW trending collection of over 400 volcanic centres-is increasingly attributed to some combination of edge-driven convection (EDC) and shear-driven upwelling (SDU). In this paper, we provide magnetotelluric (MT) data in support of these geodynamic processes. Three-dimensional inversion of 49 new broadband MT sites, in combination with 143 previously collected broadband, long-period, and geomagnetic depth soundings, reveals an elongate zone of moderately low resistivity (∼ 10-300 Ω m) spanning the Mt Gambier subprovince at a depth of between 20 and 40 km. The newly defined Gambier Conductor is contiguous to, and orientationally aligned with, significant step in the seismically-defined lithosphere-asthenosphere boundary (LAB) presented by earlier studies. Moderately low resistivity is interpreted as fluid-catalysed alteration of iron-bearing crust resulting from percolating magmatic volatiles. We argue that localised low resistivity (< 10 Ω m) at ~ 25 km depth in the mid-lower crust is associated with 1.2-3.6% partial melt. Supporting evidence indicates possible crustal thickening from 5.8 Ma at a rate comparable to estimates of SDU-induced surface eruptions and previous NVP production rate estimates.
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Affiliation(s)
- S Jennings
- Mawson Centre for Geoscience, University of Adelaide, North Terrace, SA, 5005, Australia.
| | - G Heinson
- Mawson Centre for Geoscience, University of Adelaide, North Terrace, SA, 5005, Australia
| | - D Hasterok
- Mawson Centre for Geoscience, University of Adelaide, North Terrace, SA, 5005, Australia
| | - B Kay
- Mawson Centre for Geoscience, University of Adelaide, North Terrace, SA, 5005, Australia
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Littlecott HJ, Moore GF, Evans RE, Melendez-Torres GJ, McCann M, Reed H, Mann M, Dobbie F, Jennings S, Donaldson C, Hawkins J. Perceptions of friendship, peers and influence on adolescent smoking according to tobacco control context: a systematic review and meta-ethnography of qualitative research. BMC Public Health 2023; 23:424. [PMID: 36869343 PMCID: PMC9983235 DOI: 10.1186/s12889-022-14727-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2022] [Accepted: 11/25/2022] [Indexed: 03/05/2023] Open
Abstract
BACKGROUND A relationship between smoking and interpersonal influences has been well established within the literature. There have been cultural shifts in denormalisation and a reduction in tobacco smoking in many countries. Hence there is a need to understand social influences on adolescents' smoking across smoking normalisation contexts. METHODS The search was conducted in July 2019 and updated in March 2022 within 11 databases and secondary sources. Search terms included schools, adolescents, smoking, peers, social norms and qualitative research. Screening was conducted by two researchers independently and in duplicate. Study quality was assessed using the eight-item Evidence for Policy and Practice Information and Co-ordinating Centre (EPPI-centre) tool for the appraisal of qualitative studies. Results were synthesised using a meta-narrative lens for meta-ethnography and compared across smoking normalisation contexts. RESULTS Forty one studies were included and five themes were developed, mapping onto the socio ecological model. The social processes by which adolescents take up smoking differed according to a mixture of school type, peer group structure and the smoking culture within the school, as well as the wider cultural context. Data available from smoking denormalised contexts, described changes in social interactions around smoking to cope with its stigmatisation. This was manifested through i) direct peer influence, whereby subtle techniques were employed, ii) group belonging whereby smoking was less likely to be seen as a key determinant of group membership and smoking was less commonly reported to be used as a social tool, and iii) popularity and identity construction, whereby smoking was perceived more negatively in a denormalised context, compared with a normalised context. CONCLUSIONS This meta-ethnography is the first study to demonstrate, drawing on international data, that peer processes in adolescent smoking may undergo changes as smoking norms within society change. Future research should focus on understanding differences across socioeconomic contexts, to inform the adaptation of interventions.
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Affiliation(s)
- H J Littlecott
- Pettenkofer School of Public Health (PSPH), Institute for Medical Information Processing, Biometry and Epidemiology (IBE), LMU Munich, Elisabeth-Winterhalter-Weg 6, Munich, 81377, Germany. .,Centre for Development, Evaluation, Complexity and Implementation in Public Health Improvement (DECIPHer), School of Social Sciences, Cardiff University, 1-3 Museum Place, Cardiff, CF10 3BD, Wales, UK.
| | - G F Moore
- Centre for Development, Evaluation, Complexity and Implementation in Public Health Improvement (DECIPHer), School of Social Sciences, Cardiff University, 1-3 Museum Place, Cardiff, CF10 3BD, Wales, UK
| | - R E Evans
- Centre for Development, Evaluation, Complexity and Implementation in Public Health Improvement (DECIPHer), School of Social Sciences, Cardiff University, 1-3 Museum Place, Cardiff, CF10 3BD, Wales, UK
| | - G J Melendez-Torres
- Peninsula Technology Assessment Group (PenTAG), South Cloisters, University of Exeter, St Luke's Campus, Heavitree Road, Exeter, EX1 2LU, UK
| | - M McCann
- MRC/CSO Social and Public Health Sciences Unit, University of Glasgow, Berkeley Square, 99 Berkeley Street, Glasgow, G3 7HR, UK
| | - H Reed
- Centre for Development, Evaluation, Complexity and Implementation in Public Health Improvement (DECIPHer), School of Social Sciences, Cardiff University, 1-3 Museum Place, Cardiff, CF10 3BD, Wales, UK
| | - M Mann
- Specialist Unit for Review Evidence, Cardiff University, 6th Floor, Neuadd Meirionnydd, Heath Park Campus, Cardiff, CF14 4YS, UK
| | - F Dobbie
- Usher Institute- University of Edinburgh, Doorway 1, Old Medical School, Teviot Place, Edinburgh, EH8 9AG, UK
| | - S Jennings
- Teaching and Learning for Health Professionals, Bristol Medical School, Faculty of Health Sciences, University of Bristol, 39-41 St Michael's Hill, Bristol, BS2 8EZ, UK
| | - C Donaldson
- Centre for Development, Evaluation, Complexity and Implementation in Public Health Improvement (DECIPHer), School of Social Sciences, Cardiff University, 1-3 Museum Place, Cardiff, CF10 3BD, Wales, UK
| | - J Hawkins
- Centre for Development, Evaluation, Complexity and Implementation in Public Health Improvement (DECIPHer), School of Social Sciences, Cardiff University, 1-3 Museum Place, Cardiff, CF10 3BD, Wales, UK
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Jennings S, Hu Y, Wellems D, Luo M, Scull C, Taylor C, Nauseef W, Wang G. 405 Neutrophil defect and pathogen selection in cystic fibrosis. J Cyst Fibros 2022. [DOI: 10.1016/s1569-1993(22)01095-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Hu Y, Bojanowski C, Wellems D, Song K, Scull C, Jennings S, Li J, Kolls J, Nauseef W, Wang G. 432 Molecular signatures of human neutrophils from healthy subjects and people with cystic fibrosis. J Cyst Fibros 2022. [DOI: 10.1016/s1569-1993(22)01122-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Wellems D, Hu Y, Jennings S, Wang G. 419 Role of macrophage cystic fibrosis transmembrane conductance regulator in lung inflammation. J Cyst Fibros 2022. [DOI: 10.1016/s1569-1993(22)01109-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Stephenson K, O’Hara M, Holland C, Womble M, Jennings S, Weber Rawlins M, Elbin RJ. A-45 Clinical Considerations of Neuropsychologists for Treating Concussions. Arch Clin Neuropsychol 2022. [DOI: 10.1093/arclin/acac32.45] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
Purpose: The purpose of this study was to explore sex specific clinical considerations by neuropsychologists’ and general clinical considerations for the treatment of concussion. Methods: Fourteen clinical neuropsychologists who see concussion patients regularly (>1 case per week) were interviewed using a semi-structured guide that included a generic patient vignette. Participants were asked about clinical considerations that they faced while assessing, managing, and treating concussion. Two investigators independently coded the transcriptions and met to compare coding processes, definitions, and categories. A final codebook was developed in an iterative fashion and reapplied to all transcripts. Independent coding and member checks contributed to the trustworthiness of the data. Results: Participants’ clinical experience in treating concussion ranged from 1 to 40 years, and the sample was 64% female (9/14). Four major themes were identified, including patients’ sex considerations, sleep and napping, patient education and reassurance, and mental health considerations. Several participants (4/14; 29%) noted the lack of action-oriented clinical recommendations for previously documented sex differences (i.e., menstruation). There was a lack of uniformity in sleep and napping recommendations across the participants (e.g., permitting napping vs recommended nap-length). Participants noted that a large portion of their clinical time was spent educating and reassuring patients that concussion is treatable. Comorbid mental health considerations such as anxiety were a prevailing clinical concern across participants. Conclusions: The study revealed the need for better action-oriented clinical recommendations in consensus statements that address the four main themes of sex considerations, sleep and napping considerations, patient education and reassurance, and mental health considerations.
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Du YK, Fernandes C, Le AN, Good M, Duvall M, Jennings S, Powers J, Zelley K, Katona BW, MacFarland SP, Maxwell KN. Abstract 2237: Rates of intervention after initial versus subsequent whole-body MRI screening in Li-Fraumeni Syndrome. Cancer Res 2022. [DOI: 10.1158/1538-7445.am2022-2237] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Abstract
Background: Yearly whole-body MRI is recommended for cancer screening in patients with the rare high risk cancer predisposition syndrome, Li-Fraumeni syndrome (LFS). This is based on data from multiple studies demonstrating an approximately 7% cancer detection rate on baseline screening. However, the rate of actionable findings and malignancies on initial versus subsequent screenings has yet to be compared in a patient cohort.
Patients and Methods: We identified 68 adult LFS patients in a single institutional cohort that received more than one full body MRI (including brain MRI). For each screening instance, findings and subsequent recommended interventions (immediate and short-term imaging, biopsy, and/or surgery) were recorded. Invasive interventions (biopsy and/or surgery) were denoted with free text describing pathology results. We analyzed findings on initial versus subsequent scans.
Results: There were 258 instances of whole-body MRI screenings performed in 68 patients (28% male, 72% female) in the cohort. The mean number of screenings per patient analyzed was 3.8±1.9 over 3.3±2.4 years. Among 68 initial screenings, 26 (38.2%) required follow-up imaging or invasive intervention. Among 190 subsequent screenings, the follow-up intervention rate was significantly lower (n=36, 18.9%, p=0.0026). Eleven screenings (5.8%) required invasive follow-up (biopsy or surgery); two (3% of patients) were from an initial screening and nine (13% of patients) were from a subsequent screening. From these interventions, we identified six total cancers in five patients amongst the cohort (7% of patients), with two cancers (3% of patients) being identified on the first screening and four (6% of patients) being identified on a subsequent screening.
Conclusion: Cancer detection rates were similar between initial and subsequent whole-body MRI screenings in LFS patients. Follow-up interventions decreased significantly on subsequent screenings compared to the initial screen. These findings may be useful in counseling of LFS patients initiating a screening program. Limitations of this study include lack of inclusion of other screening modalities in the analysis, short follow-up duration, and loss to follow-up. Further studies involving a larger cohort with longer-term follow-up are needed to fully determine the impact of long-term whole-body MRI screening in LFS.
Citation Format: Yun K. Du, Conrad Fernandes, Anh N. Le, Madeline Good, Miche Duvall, Sarah Jennings, Jacquelyn Powers, Kristen Zelley, Bryson W. Katona, Suzanne P. MacFarland, Kara N. Maxwell. Rates of intervention after initial versus subsequent whole-body MRI screening in Li-Fraumeni Syndrome [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2022; 2022 Apr 8-13. Philadelphia (PA): AACR; Cancer Res 2022;82(12_Suppl):Abstract nr 2237.
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Affiliation(s)
- Yun K. Du
- 1Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA
| | - Conrad Fernandes
- 1Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA
| | - Anh N. Le
- 1Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA
| | - Madeline Good
- 1Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA
| | - Miche Duvall
- 1Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA
| | - Sarah Jennings
- 1Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA
| | - Jacquelyn Powers
- 1Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA
| | - Kristen Zelley
- 1Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA
| | - Bryson W. Katona
- 1Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA
| | | | - Kara N. Maxwell
- 1Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA
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Bax N, Novaglio C, Maxwell KH, Meyers K, McCann J, Jennings S, Frusher S, Fulton EA, Nursey-Bray M, Fischer M, Anderson K, Layton C, Emad GR, Alexander KA, Rousseau Y, Lunn Z, Carter CG. Ocean resource use: building the coastal blue economy. Rev Fish Biol Fish 2022; 32:189-207. [PMID: 33679009 PMCID: PMC7922727 DOI: 10.1007/s11160-021-09636-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2020] [Accepted: 01/08/2021] [Indexed: 05/05/2023]
Abstract
Humans have relied on coastal resources for centuries. However, current growth in population and increased accessibility of coastal resources through technology have resulted in overcrowded and often conflicted spaces. The recent global move towards development of national blue economy strategies further highlights the increased focus on coastal resources to address a broad range of blue growth industries. The need to manage sustainable development and future exploitation of both over-utilised and emergent coastal resources is both a political and environmental complexity. To address this complexity, we draw on the perspectives of a multi-disciplinary team, utilising two in depth exemplary case studies in New Zealand and within the Myanmar Delta Landscape, to showcase barriers, pathways and actions that facilitate a move from Business as Usual (BAU) to a future aligned with the Sustainable Development Goals (SDGs) and the UN International Decade of Ocean Science for Sustainable Development 2021-2030. We provide key recommendations to guide interest groups, and nations globally, towards sustainable utilisation, conservation and preservation of their marine environments in a fair and equitable way, and in collaboration with those who directly rely upon coastal ecosystems. We envision a sustainable future driven by conflict mitigation and resolution, where:(i)Change is motivated and facilitated(ii)Coastal ecosystems are co-managed by multiple reliant groups(iii)Networks that maintain and enhance biodiversity are implemented(iv)Decision-making is equitable and based on ecosystem services(v)Knowledge of the marine realm is strengthened-'mapping the ocean of life'(vi)The interests of diverse user groups are balanced with a fair distribution of benefits.
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Affiliation(s)
- Narissa Bax
- Institute for Marine and Antarctic Studies, University of Tasmania, Battery Point, Hobart, TAS Australia
- Centre for Marine Socioecology, Hobart, TAS Australia
| | - Camilla Novaglio
- Institute for Marine and Antarctic Studies, University of Tasmania, Battery Point, Hobart, TAS Australia
- Centre for Marine Socioecology, Hobart, TAS Australia
- CSIRO, Oceans and Atmosphere, Hobart, TAS Australia
| | | | - Koen Meyers
- AP University of Applied Sciences and Arts Antwerp, Antwerp, Belgium
| | - Joy McCann
- Australian National University, Canberra, ACT Australia
| | - Sarah Jennings
- Institute for Marine and Antarctic Studies, University of Tasmania, Battery Point, Hobart, TAS Australia
- Centre for Marine Socioecology, Hobart, TAS Australia
| | - Stewart Frusher
- Institute for Marine and Antarctic Studies, University of Tasmania, Battery Point, Hobart, TAS Australia
- Centre for Marine Socioecology, Hobart, TAS Australia
| | - Elizabeth A. Fulton
- Centre for Marine Socioecology, Hobart, TAS Australia
- CSIRO, Oceans and Atmosphere, Hobart, TAS Australia
| | - Melissa Nursey-Bray
- Geography, Environment, Population, University of Adelaide, Adelaide, South Australia Australia
| | - Mibu Fischer
- Centre for Marine Socioecology, Hobart, TAS Australia
- CSIRO, Oceans and Atmosphere, Hobart, TAS Australia
- CSIRO, Oceans and Atmosphere, St Lucia, Queensland, Australia
| | - Kelli Anderson
- Institute for Marine and Antarctic Studies, University of Tasmania, Newnham campus, Launceston, TAS Australia
| | - Cayne Layton
- Institute for Marine and Antarctic Studies, University of Tasmania, Battery Point, Hobart, TAS Australia
- Centre for Marine Socioecology, Hobart, TAS Australia
| | - Gholam Reza Emad
- Australian Maritime College, University of Tasmania, Launceston, TAS Australia
| | - Karen A. Alexander
- Institute for Marine and Antarctic Studies, University of Tasmania, Battery Point, Hobart, TAS Australia
- Centre for Marine Socioecology, Hobart, TAS Australia
| | - Yannick Rousseau
- Institute for Marine and Antarctic Studies, University of Tasmania, Battery Point, Hobart, TAS Australia
- Centre for Marine Socioecology, Hobart, TAS Australia
| | - Zau Lunn
- Fauna and Flora International, Yangon, Myanmar
| | - Chris G. Carter
- Institute for Marine and Antarctic Studies, University of Tasmania, Battery Point, Hobart, TAS Australia
- Blue Economy CRC, c/o Australian Maritime College, Maritime Way, Newnham, Launceston, Tasmania Australia
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Novaglio C, Bax N, Boschetti F, Emad GR, Frusher S, Fullbrook L, Hemer M, Jennings S, van Putten I, Robinson LM, Spain E, Vince J, Voyer M, Wood G, Fulton EA. Deep aspirations: towards a sustainable offshore Blue Economy. Rev Fish Biol Fish 2022; 32:209-230. [PMID: 33500602 PMCID: PMC7819630 DOI: 10.1007/s11160-020-09628-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2020] [Accepted: 11/21/2020] [Indexed: 05/06/2023]
Abstract
ABSTRACT The ocean economy is experiencing rapid growth that will provide benefits but will also pose environmental and social risks. With limited space and degraded resources in coastal areas, offshore waters will be a particular focus of Blue Economy expansion over the next decade. When emerging and established economic sectors expand in offshore waters (within national Exclusive Economic Zones), different potential Blue Economy opportunities and challenges will arise. Following a series of interdisciplinary workshops, we imagine two technically possible futures for the offshore Blue Economy and we identify the actions required to achieve the more sustainable outcome. Under a business as usual scenario the focus will remain on economic growth, the commodification of nature, the dominance of private over public and cultural interests, and prioritisation of the interests of current over future generations. A more sustainable scenario would meet multiple UN Sustainable Development Goals and ensure inclusive economic developments, environmental sustainability, and fair and equitable access to resources and technologies across users, nations, and generations. Challenges to this more sustainable future are a lack of infrastructure and technology to support emerging offshore sectors, limited understanding of environmental impacts, inequitable outcomes, and a lack of planning and governmental oversight. Addressing these challenges will require a shift in societal values, a more balanced allocation of funding to offshore activities, transparency in information sharing between industries and across nations, and adjustment of international legal and institutional mechanisms. The sustainable and equitable offshore Blue Economy we envisage is achievable and provides a unique opportunity to build global capacity and partnership.
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Affiliation(s)
- Camilla Novaglio
- CSIRO, Oceans and Atmosphere, Hobart, TAS Australia
- Centre for Marine Socioecology, Hobart, TAS Australia
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, TAS Australia
| | - Narissa Bax
- Centre for Marine Socioecology, Hobart, TAS Australia
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, TAS Australia
| | | | - Gholam Reza Emad
- Australian Maritime College, University of Tasmania, Launceston, TAS Australia
| | - Stewart Frusher
- Centre for Marine Socioecology, Hobart, TAS Australia
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, TAS Australia
| | - Liam Fullbrook
- Centre for Marine Socioecology, Hobart, TAS Australia
- School of Social Sciences, University of Tasmania, Hobart, TAS Australia
| | - Mark Hemer
- CSIRO, Oceans and Atmosphere, Hobart, TAS Australia
| | | | - Ingrid van Putten
- CSIRO, Oceans and Atmosphere, Hobart, TAS Australia
- Centre for Marine Socioecology, Hobart, TAS Australia
| | - Lucy M. Robinson
- CSIRO, Oceans and Atmosphere, Perth, WA Australia
- Oceans Graduate School, University of Western Australia, Perth, WA Australia
| | - Erica Spain
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, TAS Australia
| | - Joanna Vince
- Centre for Marine Socioecology, Hobart, TAS Australia
- School of Social Sciences, University of Tasmania, Launceston, TAS Australia
| | - Michelle Voyer
- Australian National Centre for Ocean Resources and Security (ANCORS), University of Wollongong, Wollongong, NSW Australia
| | - Graham Wood
- Centre for Marine Socioecology, Hobart, TAS Australia
- School of Humanities, University of Tasmania, Launceston, TAS Australia
| | - Elizabeth A. Fulton
- CSIRO, Oceans and Atmosphere, Hobart, TAS Australia
- Centre for Marine Socioecology, Hobart, TAS Australia
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Bax N, Novaglio C, Maxwell KH, Meyers K, McCann J, Jennings S, Frusher S, Fulton EA, Nursey-Bray M, Fischer M, Anderson K, Layton C, Emad GR, Alexander KA, Rousseau Y, Lunn Z, Carter CG. Ocean resource use: building the coastal blue economy. Rev Fish Biol Fish 2022. [PMID: 33679009 DOI: 10.22541/au.160391057.79751584/v2] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
Humans have relied on coastal resources for centuries. However, current growth in population and increased accessibility of coastal resources through technology have resulted in overcrowded and often conflicted spaces. The recent global move towards development of national blue economy strategies further highlights the increased focus on coastal resources to address a broad range of blue growth industries. The need to manage sustainable development and future exploitation of both over-utilised and emergent coastal resources is both a political and environmental complexity. To address this complexity, we draw on the perspectives of a multi-disciplinary team, utilising two in depth exemplary case studies in New Zealand and within the Myanmar Delta Landscape, to showcase barriers, pathways and actions that facilitate a move from Business as Usual (BAU) to a future aligned with the Sustainable Development Goals (SDGs) and the UN International Decade of Ocean Science for Sustainable Development 2021-2030. We provide key recommendations to guide interest groups, and nations globally, towards sustainable utilisation, conservation and preservation of their marine environments in a fair and equitable way, and in collaboration with those who directly rely upon coastal ecosystems. We envision a sustainable future driven by conflict mitigation and resolution, where:(i)Change is motivated and facilitated(ii)Coastal ecosystems are co-managed by multiple reliant groups(iii)Networks that maintain and enhance biodiversity are implemented(iv)Decision-making is equitable and based on ecosystem services(v)Knowledge of the marine realm is strengthened-'mapping the ocean of life'(vi)The interests of diverse user groups are balanced with a fair distribution of benefits.
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Affiliation(s)
- Narissa Bax
- Institute for Marine and Antarctic Studies, University of Tasmania, Battery Point, Hobart, TAS Australia
- Centre for Marine Socioecology, Hobart, TAS Australia
| | - Camilla Novaglio
- Institute for Marine and Antarctic Studies, University of Tasmania, Battery Point, Hobart, TAS Australia
- Centre for Marine Socioecology, Hobart, TAS Australia
- CSIRO, Oceans and Atmosphere, Hobart, TAS Australia
| | - Kimberley H Maxwell
- Environmental Research Institute, University of Waikato, Tauranga, New Zealand
| | - Koen Meyers
- AP University of Applied Sciences and Arts Antwerp, Antwerp, Belgium
| | - Joy McCann
- Australian National University, Canberra, ACT Australia
| | - Sarah Jennings
- Centre for Marine Socioecology, Hobart, TAS Australia
- Institute for Marine and Antarctic Studies, University of Tasmania, Battery Point, Hobart, TAS Australia
| | - Stewart Frusher
- Centre for Marine Socioecology, Hobart, TAS Australia
- Institute for Marine and Antarctic Studies, University of Tasmania, Battery Point, Hobart, TAS Australia
| | - Elizabeth A Fulton
- CSIRO, Oceans and Atmosphere, Hobart, TAS Australia
- Centre for Marine Socioecology, Hobart, TAS Australia
| | - Melissa Nursey-Bray
- Geography, Environment, Population, University of Adelaide, Adelaide, South Australia Australia
| | - Mibu Fischer
- CSIRO, Oceans and Atmosphere, Hobart, TAS Australia
- Centre for Marine Socioecology, Hobart, TAS Australia
- CSIRO, Oceans and Atmosphere, St Lucia, Queensland, Australia
| | - Kelli Anderson
- Institute for Marine and Antarctic Studies, University of Tasmania, Newnham campus, Launceston, TAS Australia
| | - Cayne Layton
- Institute for Marine and Antarctic Studies, University of Tasmania, Battery Point, Hobart, TAS Australia
- Centre for Marine Socioecology, Hobart, TAS Australia
| | - Gholam Reza Emad
- Australian Maritime College, University of Tasmania, Launceston, TAS Australia
| | - Karen A Alexander
- Institute for Marine and Antarctic Studies, University of Tasmania, Battery Point, Hobart, TAS Australia
- Centre for Marine Socioecology, Hobart, TAS Australia
| | - Yannick Rousseau
- Institute for Marine and Antarctic Studies, University of Tasmania, Battery Point, Hobart, TAS Australia
- Centre for Marine Socioecology, Hobart, TAS Australia
| | - Zau Lunn
- Fauna and Flora International, Yangon, Myanmar
| | - Chris G Carter
- Institute for Marine and Antarctic Studies, University of Tasmania, Battery Point, Hobart, TAS Australia
- Blue Economy CRC, c/o Australian Maritime College, Maritime Way, Newnham, Launceston, Tasmania Australia
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Novaglio C, Bax N, Boschetti F, Emad GR, Frusher S, Fullbrook L, Hemer M, Jennings S, van Putten I, Robinson LM, Spain E, Vince J, Voyer M, Wood G, Fulton EA. Deep aspirations: towards a sustainable offshore Blue Economy. Rev Fish Biol Fish 2022; 32:209-230. [PMID: 33500602 DOI: 10.1007/s11160-020-09628] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 04/11/2020] [Accepted: 11/21/2020] [Indexed: 05/23/2023]
Abstract
ABSTRACT The ocean economy is experiencing rapid growth that will provide benefits but will also pose environmental and social risks. With limited space and degraded resources in coastal areas, offshore waters will be a particular focus of Blue Economy expansion over the next decade. When emerging and established economic sectors expand in offshore waters (within national Exclusive Economic Zones), different potential Blue Economy opportunities and challenges will arise. Following a series of interdisciplinary workshops, we imagine two technically possible futures for the offshore Blue Economy and we identify the actions required to achieve the more sustainable outcome. Under a business as usual scenario the focus will remain on economic growth, the commodification of nature, the dominance of private over public and cultural interests, and prioritisation of the interests of current over future generations. A more sustainable scenario would meet multiple UN Sustainable Development Goals and ensure inclusive economic developments, environmental sustainability, and fair and equitable access to resources and technologies across users, nations, and generations. Challenges to this more sustainable future are a lack of infrastructure and technology to support emerging offshore sectors, limited understanding of environmental impacts, inequitable outcomes, and a lack of planning and governmental oversight. Addressing these challenges will require a shift in societal values, a more balanced allocation of funding to offshore activities, transparency in information sharing between industries and across nations, and adjustment of international legal and institutional mechanisms. The sustainable and equitable offshore Blue Economy we envisage is achievable and provides a unique opportunity to build global capacity and partnership.
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Affiliation(s)
- Camilla Novaglio
- CSIRO, Oceans and Atmosphere, Hobart, TAS Australia
- Centre for Marine Socioecology, Hobart, TAS Australia
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, TAS Australia
| | - Narissa Bax
- Centre for Marine Socioecology, Hobart, TAS Australia
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, TAS Australia
| | | | - Gholam Reza Emad
- Australian Maritime College, University of Tasmania, Launceston, TAS Australia
| | - Stewart Frusher
- Centre for Marine Socioecology, Hobart, TAS Australia
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, TAS Australia
| | - Liam Fullbrook
- Centre for Marine Socioecology, Hobart, TAS Australia
- School of Social Sciences, University of Tasmania, Hobart, TAS Australia
| | - Mark Hemer
- CSIRO, Oceans and Atmosphere, Hobart, TAS Australia
| | | | - Ingrid van Putten
- CSIRO, Oceans and Atmosphere, Hobart, TAS Australia
- Centre for Marine Socioecology, Hobart, TAS Australia
| | - Lucy M Robinson
- CSIRO, Oceans and Atmosphere, Perth, WA Australia
- Oceans Graduate School, University of Western Australia, Perth, WA Australia
| | - Erica Spain
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, TAS Australia
| | - Joanna Vince
- Centre for Marine Socioecology, Hobart, TAS Australia
- School of Social Sciences, University of Tasmania, Launceston, TAS Australia
| | - Michelle Voyer
- Australian National Centre for Ocean Resources and Security (ANCORS), University of Wollongong, Wollongong, NSW Australia
| | - Graham Wood
- Centre for Marine Socioecology, Hobart, TAS Australia
- School of Humanities, University of Tasmania, Launceston, TAS Australia
| | - Elizabeth A Fulton
- CSIRO, Oceans and Atmosphere, Hobart, TAS Australia
- Centre for Marine Socioecology, Hobart, TAS Australia
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Makari J, Dagenais J, Tadrous M, Jennings S, Rahmaan I, Hayes K. Hospital pharmacist discharge care is independently associated with reduced risk of readmissions for patients with chronic obstructive pulmonary disease: A propensity-matched cohort study. Can Pharm J (Ott) 2021; 155:101-106. [PMID: 35300019 PMCID: PMC8922223 DOI: 10.1177/17151635211061141] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2021] [Revised: 06/25/2021] [Accepted: 07/26/2021] [Indexed: 11/15/2022]
Affiliation(s)
| | | | - Mina Tadrous
- Leslie Dan Faculty of Pharmacy, University of Toronto, Toronto
- Women’s College Hospital, Toronto, Ontario
| | | | | | - Kaleen Hayes
- Dalla Lana School of Public Health, University of Toronto, Toronto
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Hernando-Calvo A, Malone E, Dai D, Prawira A, Weinreb I, Eliason A, Rodriguez A, Lajkosz K, Jennings S, Spreafico A, Siu LL, Hansen A. Abstract P154: Genomic profiling and matched therapy for recurrent or metastatic salivary gland neoplasms. Results from the matched cohort of the GEMS-001 clinical trial. Mol Cancer Ther 2021. [DOI: 10.1158/1535-7163.targ-21-p154] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Abstract
Background Salivary gland tumors (SGT) are rare and heterogeneous diseases with limited systemic options available. Results from recent basket trials including SGT cohorts for specific actionable alterations (AA) have described promising outcomes with molecularly targeted approaches (TA). Methods The GEMS-001 study (NCT02069730) is an ongoing multi-arm trial with two phases. In part 1, recurrent or metastatic (R/M) SGT patients (pts) undergo comprehensive immunohistochemistry (IHC) including HER2, androgen receptor (AR) and ALK translocation and multigene panel testing (NGS). Based on the molecular profiling results in part 1, R/M SGT pts are matched to available targeted therapies on disease progression. Here, we present the efficacy results for the matched cohort of the GEMS-001 study. Results As of July 2021, 100 pts underwent molecular profiling within part 1. According to the SGT subtype (WHO 2017): 49% adenoid cystic carcinoma (ACC), 18% salivary duct carcinoma (SDC), 9% acinic (ACI) and 24% other subtypes (O). Overall, on IHC HER2 overexpression was present in 10%, AR 24% and ALK translocation 0%. On NGS, PIK3CA mutation (mut) was in 10%, HRAS mut 7%, ERBB2/3 alterations (alt) 5%, NOTCH1-3 mut 2% and ETV6-NTRK3 fusion 2%. Up to 45% pts displayed at least 1 AA and 25% had ≥2 AA. AA were enriched in SDC (100% ≥1 AA) as compared to ACI (33% ≥1 AAs), O (58% ≥1 AA) or ACC (22% ≥1 AA) (p<0.001 Fisher's exact test). A total of 34 pts (34%) were matched to proteomic or genomic alterations. Of those matched, median age was 62 years (range 47-84), M:F 26:8, 100% ECOG≤1, and their AA-TA included 15 AR (leuprolide+bicalutamide), 4 HER2 or ERBB2 alt (trastuzumab+pertuzumab), 4 PIK3CA mut (PIK3CA inhibitor), 2 cyclin pathway alt (palbociclib), 2 ETV6-NTRK3 fusion (larotrectinib) and 7 other AAs (1 EGFR L858 mut (afatinib), 1 c-KIT mut (imatinib), 1 BAP1 mut (olaparib), 1 Non-V600 BRAF mut (pan-RAF inhibitor), 1 CHEK2 mut (olaparib), 1 ATM mut (olaparib) and 1 PTCH1 (vismodegib)). As per efficacy, overall response rate was 24% and median progression free survival 6.4 months (m) (95%CI 3.4-8.9 m) for the matched population. Complete responses were observed in 2 pts treated with leuprolide+biculatamide (AR). Partial responses were observed in 2 pts treated with larotrectinib (ETV6-NTRK3), 3 pts treated with trastuzumab+pertuzumab (HER2) and 1 pt treated with leuprolide+biculatamide (AR). Notably, among responders median duration of response was 13.9 m (95%CI 4.6-18.0 m). Conclusions In our cohort, more than one third of the population were matched to TA with promising efficacy outcomes. Our results support comprehensive molecular and IHC profiling but its clinical utility may vary depending on the SGT subtype.
Citation Format: Alberto Hernando-Calvo, Eoghan Malone, Daphne Dai, Amy Prawira, Ilan Weinreb, Anneli Eliason, Angela Rodriguez, Katherine Lajkosz, Sarah Jennings, Anna Spreafico, Lillian L. Siu, Aaron Hansen. Genomic profiling and matched therapy for recurrent or metastatic salivary gland neoplasms. Results from the matched cohort of the GEMS-001 clinical trial [abstract]. In: Proceedings of the AACR-NCI-EORTC Virtual International Conference on Molecular Targets and Cancer Therapeutics; 2021 Oct 7-10. Philadelphia (PA): AACR; Mol Cancer Ther 2021;20(12 Suppl):Abstract nr P154.
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Affiliation(s)
| | | | - Daphne Dai
- Princess Margaret Cancer Centre, Toronto, Canada
| | - Amy Prawira
- Princess Margaret Cancer Centre, Toronto, Canada
| | - Ilan Weinreb
- Princess Margaret Cancer Centre, Toronto, Canada
| | | | | | | | | | | | | | - Aaron Hansen
- Princess Margaret Cancer Centre, Toronto, Canada
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Watson GA, Heirali A, Oliva Bernal M, Cochrane K, Allen-Vercoe E, Eliason A, Jennings S, Taylor R, Hosni A, Hope A, Bratman SV, Chepeha DB, Weinreb I, Perez-Ordonez B, Waldron J, Xu W, Hansen AR, Siu LL, Coburn B, Spreafico A. Prospective manipulation of the gut microbiome with Microbial Ecosystem Therapeutic 4 (MET4) in locoregionally advanced oropharyngeal squamous cell carcinoma (LA-OPSCC) undergoing primary chemoradiation (ROMA2). J Clin Oncol 2021. [DOI: 10.1200/jco.2021.39.15_suppl.6059] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
6059 Background: Therapeutic manipulation of the gut microbiome in cancer patients (pts) is an area of active investigation. MET4 (NuBiyota) is an oral alternative to fecal transplant consisting of a mixture of human gut bacteria associated with immunotherapy (IO) response. We previously reported variation in IO-responsive taxa across stages in human papilloma virus related (HPV+) LA-OPSCC pts treated with chemoradiotherapy (CRT) (Oliva et al., ASCO 2020). ROMA-2 is the first interventional study evaluating the safety, feasibility and ecological effect of MET4, in combination with definitive CRT in HPV+ LA-OPSCC (NCT03838601). Methods: This is an investigator-initiated study of pts with HPV+ LA-OPSCC treated with standard of care CRT. MET4 is administered daily until week 4 of CRT or unacceptable toxicity. Stool samples are collected at baseline, week 4, week 8-10, and 2-months post CRT. Bacterial V4 16S rDNA was extracted from stool and sequenced. Microbiome analyses were conducted in R using DADA2, phyloseq and DESeq2. Results: As of February 11 2021, 25 pts have been enrolled. A total of 50 stool samples from the first 14 pts were collected (98% adherence) and analyzed. Baseline cohort characteristics: median age = 62.5 (range, 48-69); Stage I/II/III = 5/1/8; use of antibiotics = 1pt. 3 pts did not complete the 3-week course of MET4 treatment due to non-compliance (n = 1), withdrawal of consent (n = 1) and grade 2 diarrhea (n = 1). Other reported MET4-related adverse events (all grade 1) included bloating (n = 2), flatulence (n = 1) and belching (n = 1). No longitudinal changes in alpha-diversity were seen from baseline through follow up. Administration of MET4 resulted in a transient trend towards increased cumulative MET4 taxa relative abundance (RA) by week 4. Stage III patients demonstrated the lowest MET4 taxa RA at baseline, and the greatest increase in MET4 taxa RA from baseline to week 4. By week 4 the following taxa in all pts were increased compared to baseline: Eubacterium hallii (21.71 Log2Fold change[L2FC], padj < 0.001) and Parabacteroides johnsonii (23.67 L2FC, padj < 0.001). An increase in the following taxa was observed by weeks 8-10 compared to baseline: Akkermansia muciniphilla (3.75 L2FC, padj = 0.027), Bacteroides fragilis (6.73 L2FC, padj = 0.010), Alistipes onderdonkii (3.30 L2FC, padj = 0.049) and Parabacteroides distasonis (24.43 L2FC, padj < 0.001). Conclusions: Manipulation of the gut microbiota in these pts was feasible and safe. MET4-induced ecological changes are heterogenous and vary by taxa. MET4 taxa implicated in IO-response were increased by week 4 and week 8-10. This increase was higher in pts with stage III disease. These data suggest that specific subgroups may benefit from combination IO therapy and may guide pt selection for further interventional clinical trial design. Clinical trial information: NCT03838601.
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Affiliation(s)
| | - Alya Heirali
- Toronto General Hospital Research Institute, University Health Network, Toronto, ON, Canada
| | - Marc Oliva Bernal
- Institut Català d’Oncologia Hospitalet. Institut Català d´Investigació Biomèdica de Bellvitge (IDIBELL), Spain, Barcelona, Spain
| | | | | | | | | | - Rachel Taylor
- Princess Margaret Cancer Centre, Toronto, ON, Canada
| | - Ali Hosni
- Department of Radiation Oncology, Princess Margaret Cancer Centre, Toronto, ON, Canada
| | - Andrew Hope
- Department of Radiation Oncology, Princess Margaret Cancer Centre, Toronto, ON, Canada
| | - Scott Victor Bratman
- Department of Radiation Oncology, Princess Margaret Cancer Centre, Toronto, ON, Canada
| | | | - Ilan Weinreb
- Laboratory Medicine Program, Princess Margaret Cancer Centre, Toronto, ON, Canada
| | | | - John Waldron
- Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada
| | - Wei Xu
- Department of Biostatistics, Princess Margaret Cancer Centre, Toronto, ON, Canada
| | - Aaron Richard Hansen
- Division of Medical Oncology and Hematology, Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada
| | - Lillian L. Siu
- Princess Margaret Cancer Centre, University of Toronto, Toronto, ON, Canada
| | - Bryan Coburn
- Toronto General Hospital, University Health Network, Toronto, ON, Canada
| | - Anna Spreafico
- Division of Medical Oncology and Hematology, Princess Margaret Cancer Centre, University Health Network, University of Toronto, Toronto, ON, Canada
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Hernando-Calvo A, Rezqallah A, Malone ER, Saavedra Santa Gadea O, Spreafico A, Vieito M, Weinreb I, Aguilar S, Eliason A, Assaf JD, Rodriguez A, Bescos C, Lajkosz K, Lorente J, Jennings S, Felip E, Garralda E, Siu LL, Hansen AR, Brana I. Molecular profiling and targeted agents in recurrent, metastatic salivary gland tumor (R/M SGT) patients (pts) treated at two academic centers. J Clin Oncol 2021. [DOI: 10.1200/jco.2021.39.15_suppl.6081] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
6081 Background: Treatment selection based on actionable alterations (AAs) is an appealing strategy for pts with R/M SGT. The GEMS-001 study (NCT02069730) at Princess Margaret Cancer Centre (PM) and the Vall D´Hebron Institute of Oncology (VHIO) pre-screening program facilitate the identification of AAs for R/M SGT pts and treatment selection. Methods: We analyzed R/M SGT treated at PM and VHIO from 2015 to 2020. Clinicopathological features, molecular alterations and treatment modalities were correlated with outcomes. The primary endpoint was overall response rate (ORR) by RECIST 1.1. Clinical benefit rate (CBR) was defined by pts with partial response or stable disease ≥4 months. Clinical actionability of multigene panel testing (NGS) and immunohistochemistry (IHC) were assessed as per institutional molecular tumor boards or investigators. Pts were opportunistically matched to available therapies from each center. Results: In total 206 pts were enrolled. On IHC, HER2 overexpression was present in 9%, Androgen Receptor (AR) 33%, Estrogen/Progesterone Receptor (ER/PR) 11% and ALK overexpression 0%. On NGS, PIK3CA mutation (mut) was in 9%, NTRK fusion 6%, NOTCH1-3 mut 5%, HRAS mut 6%, ERBB2/3 alterations (alt) 4% and FGFR1-4 alt 3%. Up to 92 pts (45%) displayed at least 1 AA and 36 pts (18%) had ≥2 AAs. A total of 60 pts (29%) were matched to AAs. Of those matched, median age was 60 years (range 33-84), M:F 21:39, 95% ECOG≤1 with a median number of prior treatment lines 0 (range 0-3), and their AAs included 26 AR, 9 HER2 or ERBB2 overexpression, 9 PIK3CA mut, 3 NTRK fusion, 3 FGFR1-3 alt and 10 other AAs (2 ER/PR overexpression, 2 EGFR mut, 1 c-kit mut, 1 BAP1 mut, 1 Non-V600 BRAF mut, 1 CDKN2A mut, 1 CHEK2 mut and 1 PTCH1 mut). Overall, ORR was 27% for the matched population. See table for outcomes. Conclusions: In our cohort, almost one third of the population received therapies matched to AAs. Our results suggest that targeted therapies have promising activity in pts with R/M SGT supporting comprehensive molecular and IHC profiling in treatment determination.[Table: see text]
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Affiliation(s)
| | | | | | | | - Anna Spreafico
- Division of Medical Oncology and Hematology, Princess Margaret Cancer Centre, University Health Network, University of Toronto, Toronto, ON, Canada
| | - Maria Vieito
- Vall d'Hebron Institute of Oncology (VHIO), Vall d'Hebron University Hospital (HUVH), Barcelona, Spain
| | - Ilan Weinreb
- Laboratory Medicine Program, Princess Margaret Cancer Centre, Toronto, ON, Canada
| | | | | | | | | | - Coro Bescos
- Oral and Maxillofacial Surgery Department, Vall d’Hebron University Hospital, Barcelona, Spain
| | | | - Juan Lorente
- Otorhinolaryngology (ENT) Department, Vall d’Hebron University Hospital, Barcelona, Spain
| | | | - Enriqueta Felip
- Medical Oncology Department, Vall d’Hebron University Hospital, Barcelona, Spain
| | | | - Lillian L. Siu
- Princess Margaret Cancer Centre, University of Toronto, Toronto, ON, Canada
| | - Aaron Richard Hansen
- Division of Medical Oncology and Hematology, Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada
| | - Irene Brana
- Vall d’Hebron University Hospital, Vall d’Hebrón Institute of Oncology, Barcelona, Spain
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Lovell J, Jennings S, Hardikar A. P40 An Analysis of the Impact of Smoking Following Cardiac Surgery. Heart Lung Circ 2021. [DOI: 10.1016/j.hlc.2021.03.243] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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19
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Katona BW, Powers J, McKenna DB, Long JM, Le AN, Hausler R, Zelley K, Jennings S, Domchek SM, Nathanson KL, MacFarland SP, Maxwell KN. Upper Gastrointestinal Cancer Risk and Surveillance Outcomes in Li-Fraumeni Syndrome. Am J Gastroenterol 2020; 115:2095-2097. [PMID: 32969947 PMCID: PMC8263231 DOI: 10.14309/ajg.0000000000000935] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
INTRODUCTION To assess the upper gastrointestinal (UGI) cancer risk and surveillance outcomes in Li-Fraumeni syndrome (LFS). METHODS Analysis of the International Agency for Research on Cancer database and a single-center adult LFS cohort. RESULTS UGI cancer was present in 7.2% of families and 3.9% of individuals with a pathogenic/likely pathogenic TP53 mutation in International Agency for Research on Cancer; 29% occurred before age 30. Our institutional cohort had 35 individuals (31% of the LFS cohort) with 48 cumulative upper endoscopies; 3 (8.5%) individuals had concerning UGI findings. DISCUSSION UGI cancer is observed in LFS. Upper endoscopy should be part of a comprehensive LFS surveillance program.
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Affiliation(s)
- Bryson W. Katona
- Division of Gastroenterology and Hepatology, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA
| | - Jacquelyn Powers
- Division of Hematology and Oncology, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA
| | - Danielle B. McKenna
- Division of Hematology and Oncology, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA
| | - Jessica M. Long
- Division of Hematology and Oncology, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA
| | - Anh N. Le
- Division of Hematology and Oncology, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA
| | - Ryan Hausler
- Division of Hematology and Oncology, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA
| | - Kristin Zelley
- Department of Pediatrics, Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania, USA
| | - Sarah Jennings
- Department of Pediatrics, Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania, USA
| | - Susan M. Domchek
- Division of Hematology and Oncology, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA
| | - Katherine L. Nathanson
- Division of Translational Medicine and Human Genetics, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA
- Department of Genetics, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA
| | - Suzanne P. MacFarland
- Department of Pediatrics, Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania, USA
| | - Kara N. Maxwell
- Division of Hematology and Oncology, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA
- Department of Genetics, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA
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Robinson LM, Marzloff MP, van Putten I, Pecl G, Jennings S, Nicol S, Hobday AJ, Tracey S, Hartmann K, Haward M, Frusher S. Decision support for the Ecosystem-Based Management of a Range-Extending Species in a Global Marine Hotspot Presents Effective Strategies and Challenges. Ecosystems 2020. [DOI: 10.1007/s10021-020-00560-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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21
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Parker B, Jennings S. 380TF Mixed Asynchronous/Didactic ECG Curriculum to Increase Resident Competency. Ann Emerg Med 2020. [DOI: 10.1016/j.annemergmed.2020.09.396] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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22
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Kissinger-Knox A, Eagle S, Jennings S, Collins MW, Kontos AP. A-26 A Principal Component Analysis of Clinical Outcomes Among Adolescent Patients Following Concussion. Arch Clin Neuropsychol 2020. [DOI: 10.1093/arclin/acaa036.26] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
Objective
Previous research utilizing factor analytic methods, such as principal components analysis (PCA) has focused on concussion factors derived from symptom scales (Piland, 2003; Kontos, 2012) and neurocognitive testing (Schatz, 2013). However, researchers have yet to conduct a PCA that incorporates symptoms, cognitive, ocular, and vestibular outcomes. The purpose was to utilize PCA to examine the factor structure of concussion among adolescents within 31 days of injury.
Method
Participants included 238 adolescents (41.2% female) diagnosed with concussion. Average age was 14.81 ± 1.57 years (10 to 17 years). A PCA was performed on 11 variables, including PCSS (via symptom factors: cognitive/fatigue/migraine, affective, somatic, and sleep), near point of convergence (NPC), ImPACT composites, and VOMS symptoms. Items retained in the factor models on the basis of having a primary factor loading of .6 or above.
Results
A three-component model was supported that accounted for 65.12% of the variance: 1) cognitive, 2) symptoms, and 3) vestibular/ocular. The cognitive component included visual motor speed, reaction time, verbal, and visual memory (37.95%). Symptoms component included affective, cognitive/fatigue/migraine, and sleep (17.42%). Vestibular/ocular component included vestibular and ocular symptoms (9.75%). All items loaded into the PCA, with exception of somatic and NPC average were retained.
Conclusions
The current study supported three factors and extended findings of previous PCAs by including ocular and vestibular components. The current study better reflects contemporary models of concussion involving clinical profiles or subtypes (e.g., Harmon, 2019). Moving forward, researchers should examine factors across subacute and chronic time points to evaluate potential temporal changes in factors.
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Jennings S, Blaney N, Elbin RJ, Womble MN, Collins MW, Kontos AP. A-24 Influence of Biopsychosocial Factors on First-Appointment Presentation After Sport Related Concussion (SRC). Arch Clin Neuropsychol 2020. [DOI: 10.1093/arclin/acaa036.24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
Objective
To examine the influence of biopsychosocial factors on clinical outcomes and recovery time following SRC
Method
59 athletes with SRC (51% male) aged 14.42, SD= 1.65 years from two concussion specialty clinics between May 2019 and January 2020. Patients completed the Behavioral Regulation Assessment for Concussion (BRAC) inventory measuring sleep, diet, hydration, physical activity and stress; on a 4-point Likert scale, ImPACT, and PCSS. Analyses included one-way ANOVAs with Tukey’s post-hoc test and chi-square analyses.
Results
Verbal memory scores were higher F(3,55)= 2.85, p<.05 in participants reporting 8-10hrs of sleep “most of the time” (M= 85.12, SD = 10.58) vs. “some of the time “ (M= 75.65, SD= 11.91). Verbal memory differed when engaged in stress regulation F(4,54)= 2.65, p<.05; “MOT” (M=81.38, SD= 10.95); “SOT” (M=82.33, SD= 12.64) and “never” (M= 84.05, SD= 13.07). PCSS sleep factor scores increased when individuals obtained 8-10hrs of sleep “MOT” (M=.30, SD=.423) “SOT” (M= 1.40, SD= 1.54) and “seldom/rarely” (M= 1.95, SD= 1.58). PCSS somatic scores were associated with decreased sleep X2(1, N=57) = 37.68; p= .001, and hydration X2(1, N=57) = 60.70 p< .001. Sleep and recovery time X2(1, N=55) = 120.82 p= .028.
Conclusions
Findings suggest that biopsychosocial factors including sleep, stress, and hydration are associated with symptoms, cognitive function, and recovery time following SRC and should be monitored by clinicians.
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Oliva Bernal M, Liu Z(A, Iafolla MAJ, Spreafico A, Jennings S, Abdul Razak AR, Yang C, Bratman SV, Torti D, Pugh TJ, Siu LL, Hansen AR. Circulating tumor DNA dynamics as prognostic and predictive biomarkers of response to pembrolizumab in patients with virally-related tumors (VRT) treated within the INSPIRE study. J Clin Oncol 2020. [DOI: 10.1200/jco.2020.38.15_suppl.3068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
3068 Background: We previously showed a correlation between circulating tumor DNA (ctDNA) dynamics and response to pembrolizumab in a cohort of mixed tumors treated in the INSPIRE study (Yang et al, ESMO 2019). We investigated the prognostic and predictive value of ctDNA dynamics in patients (pts) with VRT. Methods: Pts with VRT (HPV+ squamous cell carcinoma (SCC), EBER+ nasopharyngeal carcinoma (NPC) and MCPyV+ Merkel carcinoma (MC)) and a control cohort of non-VRT (HPV- head and neck SCC) treated with single-agent pembrolizumab were selected for the analysis. ctDNA was assayed at baseline and start of cycle 3 using a pt-specific amplicon-based NGS assay (Signatera). Samples were considered ctDNA positive if ≥2 of 16 pt-specific targets met the qualifying confidence score threshold. Whole exome sequencing (WES) performed in baseline tumor tissue; presence of HPV, EBV and MCPyV in tumor determined through bioinformatic analysis of WES data (VirusFinder, PMID23717618). Changes in tumor size (mm) and response data using RECIST 1.1 were collected. Progression-free survival (PFS) and overall survival (OS) were estimated by Kaplan-Meier method. Results: Twenty pts with VRT (HPV+ head and neck = 8, cervical = 2 and anal = 2 SCC; EBER+NPC = 2; MC = 6) and 11 pts with non-VRT were included. Median follow-up: 11 months (0,5-11). Treatment response: VRT 6 responders (CR + PR + SD > 18weeks) and 14 non-responders (SD < 18 weeks + PD); non-VRT 3 responders and 8 non-responders. Median OS and PFS for all pts were 10.61 and 3.2 months, respectively. No differences in PFS (p = 0.60) nor OS (p = 0.66) were observed among responders between VRT and non-VRT. Among non-responders, VRT had significantly higher OS but not PFS when compared to non-VRT (HR 0.30, p = 0.01 and HR 0.82 p = 0.62, respectively). VRT had quantitatively higher ctDNA at baseline vs non-VRT (Mean 7.9 vs 0.4 ng, p < 0.001). ΔctDNA (Change in ctDNA between baseline and cycle 3) strongly correlated with changes in tumor measurements and response by RECIST 1.1 (Spearman Rho = 0.75) and was associated with survival regardless of viral status (Table). Conclusions: ΔctDNA strongly correlated with changes in tumor response and survival in both VRT and non-VRT. Higher baseline ctDNA was found in VRT. Correlation with circulating viral DNA and radiomics analyses is on-going. [Table: see text]
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Affiliation(s)
| | - Zhihui (Amy) Liu
- Department of Biostatistics, Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada
| | | | | | | | | | - Cindy Yang
- Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada
| | - Scott Victor Bratman
- Department of Radiation Oncology, Princess Margaret Cancer Centre, Toronto, ON, Canada
| | - Dax Torti
- PM-OICR TGL, Ontario Institute for Cancer Research (OICR), Toronto, ON, Canada
| | - Trevor John Pugh
- Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada
| | - Lillian L. Siu
- Princess Margaret Cancer Centre, University of Toronto, Toronto, ON, Canada
| | - Aaron Richard Hansen
- Division of Medical Oncology and Hematology, Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada
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Malone ER, Spreafico A, Weinreb I, Jennings S, Carlsson L, Noori A, Wang L, Siu LL, Hansen AR. Recurrent or metastatic salivary gland tumor (MSGT) patients treated with selinexor, a first in class selective exportin-1 (XPO1) inhibitor. J Clin Oncol 2020. [DOI: 10.1200/jco.2020.38.15_suppl.6586] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
6586 Background: MSGT are rare with limited systemic treatments. This single institution, prospective study in recurrent or metastatic (RM) MSGT involved 2 phases: genomic profiling followed by treatment with either genomically-matched or unmatched therapy. Here we present the results of the unmatched arm for patients (pts) treated with S an oral selective inhibitor of XPO1 that leads to activation of tumor suppressor proteins and retention of oncoprotein mRNAs in the cell nucleus, inducing cancer cell apoptosis. Methods: Patients (pts) with RM-MSGT had archived paraffin embedded tumor samples profiled with targeted next generation sequencing, immunohistochemistry for androgen receptor (AR) and fluorescent in-situ hybridization for HER-2 and ALK. If no actionable mutations were identified or if no matched agents were available, pts with progressive disease could receive S (60mg given twice weekly Q28 days). The study had a simon-2 stage design; 1 partial response in the first 18 pts treated with S, would trigger an additional 7pts to receive S in stage 2. Results: Between July 2014 and April 2019 85 pts were enrolled on study: 73 had sequencing which identified 41 with no actionable mutations and 32 with actionable mutations. 18 pts (10F/8M, median age 61 years [40-79]) were treated with S and included adenoid cystic (n = 8), salivary duct (n = 4), acinic cell (n = 2) and other subtypes (n = 4). Of these 18, 4 pts had actionable aberrations: AR amplification (n = 2), mutations in SMARCB1 (n = 1) and CDKN2A (n = 1). 13pts were treatment naïve, 3pts and 2pts received 1 and 2 or more lines of treatment respectively prior to enrollment: androgen deprivation therapy (n = 2), chemotherapy (n = 3), early phase clinical trials (n = 3). The median number of cycles of S received were 3 (range: 1-19). The best response by RECIST was SD in 13pts (72%) (SD > 6 months (range: 6-18 months) in 5pts (28%); tumor reduction measured in 7pts (39%)), no PRs, PD in 3pts (17%), and 2pts (11%) were not evaluable for response due to insufficient duration of treatment coming off early due to toxicity. The median PFS (95% CI) was 7.6 (3.5-NA) months and the median OS (95% CI) was 15.4 (7.3-NA) months. The most common drug-related toxicities were grade 1-2 fatigue 14pts (78%), nausea 13pts (72%) and dysguesia 10pts (56%). 5 (28%) pts had a dose reduction and 6 (33%) in total had a dose interruption due to toxicity. Conclusions: Single agent antitumor activity was limited and the side effect profile was tolerable. No specific genomic aberration was associated with response to S. Clinical trial information: NCT02069730 .
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Affiliation(s)
| | | | - Ilan Weinreb
- Laboratory Medicine Program, Princess Margaret Cancer Centre, Toronto, ON, Canada
| | | | | | - Ahmad Noori
- Princess Margaret Hospital, Toronto, ON, Canada
| | - Lisa Wang
- Department of Biostatistics, Princess Margaret Cancer Centre, Toronto, ON, Canada
| | - Lillian L. Siu
- Princess Margaret Cancer Centre, University of Toronto, Toronto, ON, Canada
| | - Aaron Richard Hansen
- Division of Medical Oncology and Hematology, Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada
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26
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Blackwood R, Wolstenholme A, Kimergård A, Fincham-Campbell S, Khadjesari Z, Coulton S, Byford S, Deluca P, Jennings S, Currell E, Dunne J, O'Toole J, Winnington J, Finch E, Drummond C. Assertive outreach treatment versus care as usual for the treatment of high-need, high-cost alcohol related frequent attenders: study protocol for a randomised controlled trial. BMC Public Health 2020; 20:332. [PMID: 32171278 PMCID: PMC7071678 DOI: 10.1186/s12889-020-8437-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2019] [Accepted: 02/28/2020] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Alcohol-related hospital admissions have doubled in the last ten years to > 1.2 m per year in England. High-need, high-cost (HNHC) alcohol-related frequent attenders (ARFA) are a relatively small subgroup of patients, having multiple admissions or attendances from alcohol during a short time period. This trial aims to test the effectiveness of an assertive outreach treatment (AOT) approach in improving clinical outcomes for ARFA, and reducing resource use in the acute setting. METHODS One hundred and sixty ARFA patients will be recruited and following baseline assessment, randomly assigned to AOT plus care as usual (CAU) or CAU alone in equal numbers. Baseline assessment includes alcohol consumption and related problems, physical and mental health comorbidity and health and social care service use in the previous 6 months using standard validated tools, plus a measure of resource use. Follow-up assessments at 6 and 12 months after randomization includes the same tools as baseline plus standard measure of patient satisfaction. Outcomes for CAU + AOT and CAU at 6 and 12 months will be compared, controlling for pre-specified baseline measures. Primary outcome will be percentage of days abstinent at 12 months. Secondary outcomes include emergency department (ED) attendance, number and length of hospital admissions, alcohol consumption, alcohol-related problems, other health service use, mental and physical comorbidity 6 and 12 months post intervention. Health economic analysis will estimate the economic impact of AOT from health, social care and societal perspectives and explore cost-effectiveness in terms of quality adjusted life years and alcohol consumption at 12-month follow-up. DISCUSSION AOT models piloted with alcohol dependent patients have demonstrated significant reductions in alcohol consumption and use of unplanned National Health Service (NHS) care, with increased engagement with alcohol treatment services, compared with patients receiving CAU. While AOT interventions are costlier per case than current standard care in the UK, the rationale for targeting HNHC ARFAs is because of their disproportionate contribution to overall alcohol burden on the NHS. No previous studies have evaluated the clinical and cost-effectiveness of AOT for HNHC ARFAs: this randomized controlled trial (RCT) targeting ARFAs across five South London NHS Trusts is the first. TRIAL REGISTRATION International standard randomized controlled trial number (ISRCTN) registry: ISRCTN67000214, retrospectively registered 26/11/2016.
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Affiliation(s)
- R Blackwood
- National Addiction Centre, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK.
| | - A Wolstenholme
- National Addiction Centre, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK
| | - A Kimergård
- National Addiction Centre, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK
| | - S Fincham-Campbell
- National Addiction Centre, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK
| | - Z Khadjesari
- National Addiction Centre, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK
| | - S Coulton
- University of Kent, Kent, Canterbury, UK
| | - S Byford
- King's Health Economics, Institute of Psychiatry, Psychology & Neuroscience at King's College London, London, UK
| | - P Deluca
- National Addiction Centre, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK
| | - S Jennings
- National Addiction Centre, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK
| | - E Currell
- National Addiction Centre, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK
| | - J Dunne
- National Addiction Centre, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK
| | - J O'Toole
- NIHR Collaborations for Leadership in Applied Health Research and Care South London, London, UK
| | - J Winnington
- South London and the Maudsley NHS Foundation Trust, London, UK
| | - E Finch
- South London and the Maudsley NHS Foundation Trust, London, UK
| | - C Drummond
- National Addiction Centre, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK
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27
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Pecl GT, Ogier E, Jennings S, van Putten I, Crawford C, Fogarty H, Frusher S, Hobday AJ, Keane J, Lee E, MacLeod C, Mundy C, Stuart-Smith J, Tracey S. Autonomous adaptation to climate-driven change in marine biodiversity in a global marine hotspot. Ambio 2019; 48:1498-1515. [PMID: 31098878 PMCID: PMC6883019 DOI: 10.1007/s13280-019-01186-x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2018] [Revised: 02/01/2019] [Accepted: 04/09/2019] [Indexed: 05/05/2023]
Abstract
While governments and natural resource managers grapple with how to respond to climatic changes, many marine-dependent individuals, organisations and user-groups in fast-changing regions of the world are already adjusting their behaviour to accommodate these. However, we have little information on the nature of these autonomous adaptations that are being initiated by resource user-groups. The east coast of Tasmania, Australia, is one of the world's fastest warming marine regions with extensive climate-driven changes in biodiversity already observed. We present and compare examples of autonomous adaptations from marine users of the region to provide insights into factors that may have constrained or facilitated the available range of autonomous adaptation options and discuss potential interactions with governmental planned adaptations. We aim to support effective adaptation by identifying the suite of changes that marine users are making largely without government or management intervention, i.e. autonomous adaptations, to better understand these and their potential interactions with formal adaptation strategies.
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Affiliation(s)
- Gretta T. Pecl
- Institute for Marine and Antarctic Studies, University of Tasmania, PO Box 49, Hobart, TAS 7001 Australia
- Centre for Marine Socioecology, University of Tasmania, Private Bag 49, Hobart, TAS 7001 Australia
| | - Emily Ogier
- Institute for Marine and Antarctic Studies, University of Tasmania, PO Box 49, Hobart, TAS 7001 Australia
- Centre for Marine Socioecology, University of Tasmania, Private Bag 49, Hobart, TAS 7001 Australia
| | - Sarah Jennings
- Centre for Marine Socioecology, University of Tasmania, Private Bag 49, Hobart, TAS 7001 Australia
- Tasmanian School of Business and Economics, University of Tasmania, Private Bag 84, Hobart, TAS 7001 Australia
| | - Ingrid van Putten
- Centre for Marine Socioecology, University of Tasmania, Private Bag 49, Hobart, TAS 7001 Australia
- CSIRO Oceans and Atmosphere, 3-4 Castray Esplanade, Hobart, TAS 7004 Australia
| | - Christine Crawford
- Institute for Marine and Antarctic Studies, University of Tasmania, PO Box 49, Hobart, TAS 7001 Australia
| | - Hannah Fogarty
- Institute for Marine and Antarctic Studies, University of Tasmania, PO Box 49, Hobart, TAS 7001 Australia
- Centre for Marine Socioecology, University of Tasmania, Private Bag 49, Hobart, TAS 7001 Australia
| | - Stewart Frusher
- Centre for Marine Socioecology, University of Tasmania, Private Bag 49, Hobart, TAS 7001 Australia
| | - Alistair J. Hobday
- Centre for Marine Socioecology, University of Tasmania, Private Bag 49, Hobart, TAS 7001 Australia
- CSIRO Oceans and Atmosphere, 3-4 Castray Esplanade, Hobart, TAS 7004 Australia
| | - John Keane
- Institute for Marine and Antarctic Studies, University of Tasmania, PO Box 49, Hobart, TAS 7001 Australia
| | - Emma Lee
- Centre for Marine Socioecology, University of Tasmania, Private Bag 49, Hobart, TAS 7001 Australia
- Centre for Social Impact at Swinburne University of Technology, Hawthorn, VIC 3122 Australia
| | - Catriona MacLeod
- Institute for Marine and Antarctic Studies, University of Tasmania, PO Box 49, Hobart, TAS 7001 Australia
- Centre for Marine Socioecology, University of Tasmania, Private Bag 49, Hobart, TAS 7001 Australia
| | - Craig Mundy
- Institute for Marine and Antarctic Studies, University of Tasmania, PO Box 49, Hobart, TAS 7001 Australia
| | - Jemina Stuart-Smith
- Institute for Marine and Antarctic Studies, University of Tasmania, PO Box 49, Hobart, TAS 7001 Australia
| | - Sean Tracey
- Institute for Marine and Antarctic Studies, University of Tasmania, PO Box 49, Hobart, TAS 7001 Australia
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28
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Jennings S, French J, Holland C, Collins M, Kontos AP. Comparison of Clinical Outcomes Following Patients' First and Second Concussions. Arch Clin Neuropsychol 2019. [DOI: 10.1093/arclin/acz026.36] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Abstract
Purpose
The objective of this study was to examine differences in self-reported symptoms, neurocognitive performance, and vestibular-ocular insufficiencies between patients’ first and second concussions. A secondary purpose was to explore the role of risk factors on recovery.
Methods
We conducted a retrospective medical chart review of 73 (32-M/41-F) patients aged 15.69 (SD=1.67) years from a concussion specialty clinic with two separate concussions (84.9% of 1st and 79.5% of 2nd sport-related) that occurred between August 2010 and April 2018. Clinical outcomes included the PCSS, ImPACT, and the Vestibular/Ocular Motor Screening (VOMS). A series of paired samples t-tests were used to compare clinical outcomes along with chi-square analyses for risk factor associations.
Results
Verbal memory scores were higher following the second (M=80.67, SD=15.3) (M=76.32, SD=15.65) (t[73]=–2.18, p=.03) concussion. Visual motor processing speed was faster following the second concussion (M=35.04, SD= 7.90) (M=31.35, SD=7.63) (t[73]=–5.72, p<.001). There were no other significant differences observed. Recovery time was similar for the first (61.07, SD=58.41.5) and second (67.91 SD=70.10) respectively, t(70)=–.91, p=.37. There was no relationship between any risk factors, and recovery time for either injury with the exception a significant association between gender and recovery time (>21 days) with the 1st injury for females (χ2, N=73)=10.58, p=.001.
Conclusion
Findings suggest that a second concussion does not result in more pronounced symptoms, worse neurocognitive performance, or increased deficits on vestibular/ocular performance and/or longer recovery time. The only significant risk factor to a recovery over 21 days included gender.
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Lorenzo-Betancor O, Blackburn PR, Edwards E, Vázquez-do-Campo R, Klee EW, Labbé C, Hodges K, Glover P, Sigafoos AN, Soto AI, Walton RL, Doxsey S, Bober MB, Jennings S, Clark KJ, Asmann Y, Miller D, Freeman WD, Meschia J, Ross OA. PCNT point mutations and familial intracranial aneurysms. Neurology 2018; 91:e2170-e2181. [PMID: 30413633 DOI: 10.1212/wnl.0000000000006614] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2018] [Accepted: 08/20/2018] [Indexed: 12/11/2022] Open
Abstract
OBJECTIVE To identify novel genes involved in the etiology of intracranial aneurysms (IAs) or subarachnoid hemorrhages (SAHs) using whole-exome sequencing. METHODS We performed whole-exome sequencing in 13 individuals from 3 families with an autosomal dominant IA/SAH inheritance pattern to look for candidate genes for disease. In addition, we sequenced PCNT exon 38 in a further 161 idiopathic patients with IA/SAH to find additional carriers of potential pathogenic variants. RESULTS We identified 2 different variants in exon 38 from the PCNT gene shared between affected members from 2 different families with either IA or SAH (p.R2728C and p.V2811L). One hundred sixty-four samples with either SAH or IA were Sanger sequenced for the PCNT exon 38. Five additional missense mutations were identified. We also found a second p.V2811L carrier in a family with a history of neurovascular diseases. CONCLUSION The PCNT gene encodes a protein that is involved in the process of microtubule nucleation and organization in interphase and mitosis. Biallelic loss-of-function mutations in PCNT cause a form of primordial dwarfism (microcephalic osteodysplastic primordial dwarfism type II), and ≈50% of these patients will develop neurovascular abnormalities, including IAs and SAHs. In addition, a complete Pcnt knockout mouse model (Pcnt -/-) published previously showed general vascular abnormalities, including intracranial hemorrhage. The variants in our families lie in the highly conserved PCNT protein-protein interaction domain, making PCNT a highly plausible candidate gene in cerebrovascular disease.
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Affiliation(s)
- Oswaldo Lorenzo-Betancor
- From the Department of Neuroscience (O.L.-B., C.L., K.H., P.G., A.I.S., R.L.W., O.A.R.), Center for Individualized Medicine (P.R.B., J.M.), Department of Health Sciences Research (P.R.B., Y.A.), Department of Neurology (E.E., R.V.-d-C., W.D.F., J.M.), Clinical Research Internship Study Program (P.G.), Department of Neurosurgery (D.M., W.D.F.), and Department of Clinical Genomics (O.A.R.), Mayo Clinic, Jacksonville, FL; Center for Individualized Medicine (E.W.K.), Department of Health Sciences Research (E.W.K.), Department of Laboratory Medicine and Pathology (E.W.K.), Department of Clinical Genomics (E.W.K.), and Department of Biochemistry and Molecular Biology (A.N.S., K.J.C.), Mayo Clinic, Rochester, MN; Department of Biology (K.H., O.A.R.), Basic Research Internship in Neuroscience and Cancer, University of North Florida, Jacksonville; Program in Molecular Medicine (S.D.), University of Massachusetts Medical School, Worcester; Division of Genetics (M.B.B.), Department of Pediatrics, Nemours/Alfred I. duPont Hospital for Children, Wilmington, DE; and Section of Clinical Genetics & Genetic Counseling (S.J.), St. Christopher's Hospital for Children, Philadelphia, PA
| | - Patrick R Blackburn
- From the Department of Neuroscience (O.L.-B., C.L., K.H., P.G., A.I.S., R.L.W., O.A.R.), Center for Individualized Medicine (P.R.B., J.M.), Department of Health Sciences Research (P.R.B., Y.A.), Department of Neurology (E.E., R.V.-d-C., W.D.F., J.M.), Clinical Research Internship Study Program (P.G.), Department of Neurosurgery (D.M., W.D.F.), and Department of Clinical Genomics (O.A.R.), Mayo Clinic, Jacksonville, FL; Center for Individualized Medicine (E.W.K.), Department of Health Sciences Research (E.W.K.), Department of Laboratory Medicine and Pathology (E.W.K.), Department of Clinical Genomics (E.W.K.), and Department of Biochemistry and Molecular Biology (A.N.S., K.J.C.), Mayo Clinic, Rochester, MN; Department of Biology (K.H., O.A.R.), Basic Research Internship in Neuroscience and Cancer, University of North Florida, Jacksonville; Program in Molecular Medicine (S.D.), University of Massachusetts Medical School, Worcester; Division of Genetics (M.B.B.), Department of Pediatrics, Nemours/Alfred I. duPont Hospital for Children, Wilmington, DE; and Section of Clinical Genetics & Genetic Counseling (S.J.), St. Christopher's Hospital for Children, Philadelphia, PA
| | - Emily Edwards
- From the Department of Neuroscience (O.L.-B., C.L., K.H., P.G., A.I.S., R.L.W., O.A.R.), Center for Individualized Medicine (P.R.B., J.M.), Department of Health Sciences Research (P.R.B., Y.A.), Department of Neurology (E.E., R.V.-d-C., W.D.F., J.M.), Clinical Research Internship Study Program (P.G.), Department of Neurosurgery (D.M., W.D.F.), and Department of Clinical Genomics (O.A.R.), Mayo Clinic, Jacksonville, FL; Center for Individualized Medicine (E.W.K.), Department of Health Sciences Research (E.W.K.), Department of Laboratory Medicine and Pathology (E.W.K.), Department of Clinical Genomics (E.W.K.), and Department of Biochemistry and Molecular Biology (A.N.S., K.J.C.), Mayo Clinic, Rochester, MN; Department of Biology (K.H., O.A.R.), Basic Research Internship in Neuroscience and Cancer, University of North Florida, Jacksonville; Program in Molecular Medicine (S.D.), University of Massachusetts Medical School, Worcester; Division of Genetics (M.B.B.), Department of Pediatrics, Nemours/Alfred I. duPont Hospital for Children, Wilmington, DE; and Section of Clinical Genetics & Genetic Counseling (S.J.), St. Christopher's Hospital for Children, Philadelphia, PA
| | - Rocío Vázquez-do-Campo
- From the Department of Neuroscience (O.L.-B., C.L., K.H., P.G., A.I.S., R.L.W., O.A.R.), Center for Individualized Medicine (P.R.B., J.M.), Department of Health Sciences Research (P.R.B., Y.A.), Department of Neurology (E.E., R.V.-d-C., W.D.F., J.M.), Clinical Research Internship Study Program (P.G.), Department of Neurosurgery (D.M., W.D.F.), and Department of Clinical Genomics (O.A.R.), Mayo Clinic, Jacksonville, FL; Center for Individualized Medicine (E.W.K.), Department of Health Sciences Research (E.W.K.), Department of Laboratory Medicine and Pathology (E.W.K.), Department of Clinical Genomics (E.W.K.), and Department of Biochemistry and Molecular Biology (A.N.S., K.J.C.), Mayo Clinic, Rochester, MN; Department of Biology (K.H., O.A.R.), Basic Research Internship in Neuroscience and Cancer, University of North Florida, Jacksonville; Program in Molecular Medicine (S.D.), University of Massachusetts Medical School, Worcester; Division of Genetics (M.B.B.), Department of Pediatrics, Nemours/Alfred I. duPont Hospital for Children, Wilmington, DE; and Section of Clinical Genetics & Genetic Counseling (S.J.), St. Christopher's Hospital for Children, Philadelphia, PA
| | - Eric W Klee
- From the Department of Neuroscience (O.L.-B., C.L., K.H., P.G., A.I.S., R.L.W., O.A.R.), Center for Individualized Medicine (P.R.B., J.M.), Department of Health Sciences Research (P.R.B., Y.A.), Department of Neurology (E.E., R.V.-d-C., W.D.F., J.M.), Clinical Research Internship Study Program (P.G.), Department of Neurosurgery (D.M., W.D.F.), and Department of Clinical Genomics (O.A.R.), Mayo Clinic, Jacksonville, FL; Center for Individualized Medicine (E.W.K.), Department of Health Sciences Research (E.W.K.), Department of Laboratory Medicine and Pathology (E.W.K.), Department of Clinical Genomics (E.W.K.), and Department of Biochemistry and Molecular Biology (A.N.S., K.J.C.), Mayo Clinic, Rochester, MN; Department of Biology (K.H., O.A.R.), Basic Research Internship in Neuroscience and Cancer, University of North Florida, Jacksonville; Program in Molecular Medicine (S.D.), University of Massachusetts Medical School, Worcester; Division of Genetics (M.B.B.), Department of Pediatrics, Nemours/Alfred I. duPont Hospital for Children, Wilmington, DE; and Section of Clinical Genetics & Genetic Counseling (S.J.), St. Christopher's Hospital for Children, Philadelphia, PA
| | - Catherine Labbé
- From the Department of Neuroscience (O.L.-B., C.L., K.H., P.G., A.I.S., R.L.W., O.A.R.), Center for Individualized Medicine (P.R.B., J.M.), Department of Health Sciences Research (P.R.B., Y.A.), Department of Neurology (E.E., R.V.-d-C., W.D.F., J.M.), Clinical Research Internship Study Program (P.G.), Department of Neurosurgery (D.M., W.D.F.), and Department of Clinical Genomics (O.A.R.), Mayo Clinic, Jacksonville, FL; Center for Individualized Medicine (E.W.K.), Department of Health Sciences Research (E.W.K.), Department of Laboratory Medicine and Pathology (E.W.K.), Department of Clinical Genomics (E.W.K.), and Department of Biochemistry and Molecular Biology (A.N.S., K.J.C.), Mayo Clinic, Rochester, MN; Department of Biology (K.H., O.A.R.), Basic Research Internship in Neuroscience and Cancer, University of North Florida, Jacksonville; Program in Molecular Medicine (S.D.), University of Massachusetts Medical School, Worcester; Division of Genetics (M.B.B.), Department of Pediatrics, Nemours/Alfred I. duPont Hospital for Children, Wilmington, DE; and Section of Clinical Genetics & Genetic Counseling (S.J.), St. Christopher's Hospital for Children, Philadelphia, PA
| | - Kyndall Hodges
- From the Department of Neuroscience (O.L.-B., C.L., K.H., P.G., A.I.S., R.L.W., O.A.R.), Center for Individualized Medicine (P.R.B., J.M.), Department of Health Sciences Research (P.R.B., Y.A.), Department of Neurology (E.E., R.V.-d-C., W.D.F., J.M.), Clinical Research Internship Study Program (P.G.), Department of Neurosurgery (D.M., W.D.F.), and Department of Clinical Genomics (O.A.R.), Mayo Clinic, Jacksonville, FL; Center for Individualized Medicine (E.W.K.), Department of Health Sciences Research (E.W.K.), Department of Laboratory Medicine and Pathology (E.W.K.), Department of Clinical Genomics (E.W.K.), and Department of Biochemistry and Molecular Biology (A.N.S., K.J.C.), Mayo Clinic, Rochester, MN; Department of Biology (K.H., O.A.R.), Basic Research Internship in Neuroscience and Cancer, University of North Florida, Jacksonville; Program in Molecular Medicine (S.D.), University of Massachusetts Medical School, Worcester; Division of Genetics (M.B.B.), Department of Pediatrics, Nemours/Alfred I. duPont Hospital for Children, Wilmington, DE; and Section of Clinical Genetics & Genetic Counseling (S.J.), St. Christopher's Hospital for Children, Philadelphia, PA
| | - Patrick Glover
- From the Department of Neuroscience (O.L.-B., C.L., K.H., P.G., A.I.S., R.L.W., O.A.R.), Center for Individualized Medicine (P.R.B., J.M.), Department of Health Sciences Research (P.R.B., Y.A.), Department of Neurology (E.E., R.V.-d-C., W.D.F., J.M.), Clinical Research Internship Study Program (P.G.), Department of Neurosurgery (D.M., W.D.F.), and Department of Clinical Genomics (O.A.R.), Mayo Clinic, Jacksonville, FL; Center for Individualized Medicine (E.W.K.), Department of Health Sciences Research (E.W.K.), Department of Laboratory Medicine and Pathology (E.W.K.), Department of Clinical Genomics (E.W.K.), and Department of Biochemistry and Molecular Biology (A.N.S., K.J.C.), Mayo Clinic, Rochester, MN; Department of Biology (K.H., O.A.R.), Basic Research Internship in Neuroscience and Cancer, University of North Florida, Jacksonville; Program in Molecular Medicine (S.D.), University of Massachusetts Medical School, Worcester; Division of Genetics (M.B.B.), Department of Pediatrics, Nemours/Alfred I. duPont Hospital for Children, Wilmington, DE; and Section of Clinical Genetics & Genetic Counseling (S.J.), St. Christopher's Hospital for Children, Philadelphia, PA
| | - Ashley N Sigafoos
- From the Department of Neuroscience (O.L.-B., C.L., K.H., P.G., A.I.S., R.L.W., O.A.R.), Center for Individualized Medicine (P.R.B., J.M.), Department of Health Sciences Research (P.R.B., Y.A.), Department of Neurology (E.E., R.V.-d-C., W.D.F., J.M.), Clinical Research Internship Study Program (P.G.), Department of Neurosurgery (D.M., W.D.F.), and Department of Clinical Genomics (O.A.R.), Mayo Clinic, Jacksonville, FL; Center for Individualized Medicine (E.W.K.), Department of Health Sciences Research (E.W.K.), Department of Laboratory Medicine and Pathology (E.W.K.), Department of Clinical Genomics (E.W.K.), and Department of Biochemistry and Molecular Biology (A.N.S., K.J.C.), Mayo Clinic, Rochester, MN; Department of Biology (K.H., O.A.R.), Basic Research Internship in Neuroscience and Cancer, University of North Florida, Jacksonville; Program in Molecular Medicine (S.D.), University of Massachusetts Medical School, Worcester; Division of Genetics (M.B.B.), Department of Pediatrics, Nemours/Alfred I. duPont Hospital for Children, Wilmington, DE; and Section of Clinical Genetics & Genetic Counseling (S.J.), St. Christopher's Hospital for Children, Philadelphia, PA
| | - Alexandra I Soto
- From the Department of Neuroscience (O.L.-B., C.L., K.H., P.G., A.I.S., R.L.W., O.A.R.), Center for Individualized Medicine (P.R.B., J.M.), Department of Health Sciences Research (P.R.B., Y.A.), Department of Neurology (E.E., R.V.-d-C., W.D.F., J.M.), Clinical Research Internship Study Program (P.G.), Department of Neurosurgery (D.M., W.D.F.), and Department of Clinical Genomics (O.A.R.), Mayo Clinic, Jacksonville, FL; Center for Individualized Medicine (E.W.K.), Department of Health Sciences Research (E.W.K.), Department of Laboratory Medicine and Pathology (E.W.K.), Department of Clinical Genomics (E.W.K.), and Department of Biochemistry and Molecular Biology (A.N.S., K.J.C.), Mayo Clinic, Rochester, MN; Department of Biology (K.H., O.A.R.), Basic Research Internship in Neuroscience and Cancer, University of North Florida, Jacksonville; Program in Molecular Medicine (S.D.), University of Massachusetts Medical School, Worcester; Division of Genetics (M.B.B.), Department of Pediatrics, Nemours/Alfred I. duPont Hospital for Children, Wilmington, DE; and Section of Clinical Genetics & Genetic Counseling (S.J.), St. Christopher's Hospital for Children, Philadelphia, PA
| | - Ronald L Walton
- From the Department of Neuroscience (O.L.-B., C.L., K.H., P.G., A.I.S., R.L.W., O.A.R.), Center for Individualized Medicine (P.R.B., J.M.), Department of Health Sciences Research (P.R.B., Y.A.), Department of Neurology (E.E., R.V.-d-C., W.D.F., J.M.), Clinical Research Internship Study Program (P.G.), Department of Neurosurgery (D.M., W.D.F.), and Department of Clinical Genomics (O.A.R.), Mayo Clinic, Jacksonville, FL; Center for Individualized Medicine (E.W.K.), Department of Health Sciences Research (E.W.K.), Department of Laboratory Medicine and Pathology (E.W.K.), Department of Clinical Genomics (E.W.K.), and Department of Biochemistry and Molecular Biology (A.N.S., K.J.C.), Mayo Clinic, Rochester, MN; Department of Biology (K.H., O.A.R.), Basic Research Internship in Neuroscience and Cancer, University of North Florida, Jacksonville; Program in Molecular Medicine (S.D.), University of Massachusetts Medical School, Worcester; Division of Genetics (M.B.B.), Department of Pediatrics, Nemours/Alfred I. duPont Hospital for Children, Wilmington, DE; and Section of Clinical Genetics & Genetic Counseling (S.J.), St. Christopher's Hospital for Children, Philadelphia, PA
| | - Stephen Doxsey
- From the Department of Neuroscience (O.L.-B., C.L., K.H., P.G., A.I.S., R.L.W., O.A.R.), Center for Individualized Medicine (P.R.B., J.M.), Department of Health Sciences Research (P.R.B., Y.A.), Department of Neurology (E.E., R.V.-d-C., W.D.F., J.M.), Clinical Research Internship Study Program (P.G.), Department of Neurosurgery (D.M., W.D.F.), and Department of Clinical Genomics (O.A.R.), Mayo Clinic, Jacksonville, FL; Center for Individualized Medicine (E.W.K.), Department of Health Sciences Research (E.W.K.), Department of Laboratory Medicine and Pathology (E.W.K.), Department of Clinical Genomics (E.W.K.), and Department of Biochemistry and Molecular Biology (A.N.S., K.J.C.), Mayo Clinic, Rochester, MN; Department of Biology (K.H., O.A.R.), Basic Research Internship in Neuroscience and Cancer, University of North Florida, Jacksonville; Program in Molecular Medicine (S.D.), University of Massachusetts Medical School, Worcester; Division of Genetics (M.B.B.), Department of Pediatrics, Nemours/Alfred I. duPont Hospital for Children, Wilmington, DE; and Section of Clinical Genetics & Genetic Counseling (S.J.), St. Christopher's Hospital for Children, Philadelphia, PA
| | - Michael B Bober
- From the Department of Neuroscience (O.L.-B., C.L., K.H., P.G., A.I.S., R.L.W., O.A.R.), Center for Individualized Medicine (P.R.B., J.M.), Department of Health Sciences Research (P.R.B., Y.A.), Department of Neurology (E.E., R.V.-d-C., W.D.F., J.M.), Clinical Research Internship Study Program (P.G.), Department of Neurosurgery (D.M., W.D.F.), and Department of Clinical Genomics (O.A.R.), Mayo Clinic, Jacksonville, FL; Center for Individualized Medicine (E.W.K.), Department of Health Sciences Research (E.W.K.), Department of Laboratory Medicine and Pathology (E.W.K.), Department of Clinical Genomics (E.W.K.), and Department of Biochemistry and Molecular Biology (A.N.S., K.J.C.), Mayo Clinic, Rochester, MN; Department of Biology (K.H., O.A.R.), Basic Research Internship in Neuroscience and Cancer, University of North Florida, Jacksonville; Program in Molecular Medicine (S.D.), University of Massachusetts Medical School, Worcester; Division of Genetics (M.B.B.), Department of Pediatrics, Nemours/Alfred I. duPont Hospital for Children, Wilmington, DE; and Section of Clinical Genetics & Genetic Counseling (S.J.), St. Christopher's Hospital for Children, Philadelphia, PA
| | - Sarah Jennings
- From the Department of Neuroscience (O.L.-B., C.L., K.H., P.G., A.I.S., R.L.W., O.A.R.), Center for Individualized Medicine (P.R.B., J.M.), Department of Health Sciences Research (P.R.B., Y.A.), Department of Neurology (E.E., R.V.-d-C., W.D.F., J.M.), Clinical Research Internship Study Program (P.G.), Department of Neurosurgery (D.M., W.D.F.), and Department of Clinical Genomics (O.A.R.), Mayo Clinic, Jacksonville, FL; Center for Individualized Medicine (E.W.K.), Department of Health Sciences Research (E.W.K.), Department of Laboratory Medicine and Pathology (E.W.K.), Department of Clinical Genomics (E.W.K.), and Department of Biochemistry and Molecular Biology (A.N.S., K.J.C.), Mayo Clinic, Rochester, MN; Department of Biology (K.H., O.A.R.), Basic Research Internship in Neuroscience and Cancer, University of North Florida, Jacksonville; Program in Molecular Medicine (S.D.), University of Massachusetts Medical School, Worcester; Division of Genetics (M.B.B.), Department of Pediatrics, Nemours/Alfred I. duPont Hospital for Children, Wilmington, DE; and Section of Clinical Genetics & Genetic Counseling (S.J.), St. Christopher's Hospital for Children, Philadelphia, PA
| | - Karl J Clark
- From the Department of Neuroscience (O.L.-B., C.L., K.H., P.G., A.I.S., R.L.W., O.A.R.), Center for Individualized Medicine (P.R.B., J.M.), Department of Health Sciences Research (P.R.B., Y.A.), Department of Neurology (E.E., R.V.-d-C., W.D.F., J.M.), Clinical Research Internship Study Program (P.G.), Department of Neurosurgery (D.M., W.D.F.), and Department of Clinical Genomics (O.A.R.), Mayo Clinic, Jacksonville, FL; Center for Individualized Medicine (E.W.K.), Department of Health Sciences Research (E.W.K.), Department of Laboratory Medicine and Pathology (E.W.K.), Department of Clinical Genomics (E.W.K.), and Department of Biochemistry and Molecular Biology (A.N.S., K.J.C.), Mayo Clinic, Rochester, MN; Department of Biology (K.H., O.A.R.), Basic Research Internship in Neuroscience and Cancer, University of North Florida, Jacksonville; Program in Molecular Medicine (S.D.), University of Massachusetts Medical School, Worcester; Division of Genetics (M.B.B.), Department of Pediatrics, Nemours/Alfred I. duPont Hospital for Children, Wilmington, DE; and Section of Clinical Genetics & Genetic Counseling (S.J.), St. Christopher's Hospital for Children, Philadelphia, PA
| | - Yan Asmann
- From the Department of Neuroscience (O.L.-B., C.L., K.H., P.G., A.I.S., R.L.W., O.A.R.), Center for Individualized Medicine (P.R.B., J.M.), Department of Health Sciences Research (P.R.B., Y.A.), Department of Neurology (E.E., R.V.-d-C., W.D.F., J.M.), Clinical Research Internship Study Program (P.G.), Department of Neurosurgery (D.M., W.D.F.), and Department of Clinical Genomics (O.A.R.), Mayo Clinic, Jacksonville, FL; Center for Individualized Medicine (E.W.K.), Department of Health Sciences Research (E.W.K.), Department of Laboratory Medicine and Pathology (E.W.K.), Department of Clinical Genomics (E.W.K.), and Department of Biochemistry and Molecular Biology (A.N.S., K.J.C.), Mayo Clinic, Rochester, MN; Department of Biology (K.H., O.A.R.), Basic Research Internship in Neuroscience and Cancer, University of North Florida, Jacksonville; Program in Molecular Medicine (S.D.), University of Massachusetts Medical School, Worcester; Division of Genetics (M.B.B.), Department of Pediatrics, Nemours/Alfred I. duPont Hospital for Children, Wilmington, DE; and Section of Clinical Genetics & Genetic Counseling (S.J.), St. Christopher's Hospital for Children, Philadelphia, PA
| | - David Miller
- From the Department of Neuroscience (O.L.-B., C.L., K.H., P.G., A.I.S., R.L.W., O.A.R.), Center for Individualized Medicine (P.R.B., J.M.), Department of Health Sciences Research (P.R.B., Y.A.), Department of Neurology (E.E., R.V.-d-C., W.D.F., J.M.), Clinical Research Internship Study Program (P.G.), Department of Neurosurgery (D.M., W.D.F.), and Department of Clinical Genomics (O.A.R.), Mayo Clinic, Jacksonville, FL; Center for Individualized Medicine (E.W.K.), Department of Health Sciences Research (E.W.K.), Department of Laboratory Medicine and Pathology (E.W.K.), Department of Clinical Genomics (E.W.K.), and Department of Biochemistry and Molecular Biology (A.N.S., K.J.C.), Mayo Clinic, Rochester, MN; Department of Biology (K.H., O.A.R.), Basic Research Internship in Neuroscience and Cancer, University of North Florida, Jacksonville; Program in Molecular Medicine (S.D.), University of Massachusetts Medical School, Worcester; Division of Genetics (M.B.B.), Department of Pediatrics, Nemours/Alfred I. duPont Hospital for Children, Wilmington, DE; and Section of Clinical Genetics & Genetic Counseling (S.J.), St. Christopher's Hospital for Children, Philadelphia, PA
| | - William D Freeman
- From the Department of Neuroscience (O.L.-B., C.L., K.H., P.G., A.I.S., R.L.W., O.A.R.), Center for Individualized Medicine (P.R.B., J.M.), Department of Health Sciences Research (P.R.B., Y.A.), Department of Neurology (E.E., R.V.-d-C., W.D.F., J.M.), Clinical Research Internship Study Program (P.G.), Department of Neurosurgery (D.M., W.D.F.), and Department of Clinical Genomics (O.A.R.), Mayo Clinic, Jacksonville, FL; Center for Individualized Medicine (E.W.K.), Department of Health Sciences Research (E.W.K.), Department of Laboratory Medicine and Pathology (E.W.K.), Department of Clinical Genomics (E.W.K.), and Department of Biochemistry and Molecular Biology (A.N.S., K.J.C.), Mayo Clinic, Rochester, MN; Department of Biology (K.H., O.A.R.), Basic Research Internship in Neuroscience and Cancer, University of North Florida, Jacksonville; Program in Molecular Medicine (S.D.), University of Massachusetts Medical School, Worcester; Division of Genetics (M.B.B.), Department of Pediatrics, Nemours/Alfred I. duPont Hospital for Children, Wilmington, DE; and Section of Clinical Genetics & Genetic Counseling (S.J.), St. Christopher's Hospital for Children, Philadelphia, PA
| | - James Meschia
- From the Department of Neuroscience (O.L.-B., C.L., K.H., P.G., A.I.S., R.L.W., O.A.R.), Center for Individualized Medicine (P.R.B., J.M.), Department of Health Sciences Research (P.R.B., Y.A.), Department of Neurology (E.E., R.V.-d-C., W.D.F., J.M.), Clinical Research Internship Study Program (P.G.), Department of Neurosurgery (D.M., W.D.F.), and Department of Clinical Genomics (O.A.R.), Mayo Clinic, Jacksonville, FL; Center for Individualized Medicine (E.W.K.), Department of Health Sciences Research (E.W.K.), Department of Laboratory Medicine and Pathology (E.W.K.), Department of Clinical Genomics (E.W.K.), and Department of Biochemistry and Molecular Biology (A.N.S., K.J.C.), Mayo Clinic, Rochester, MN; Department of Biology (K.H., O.A.R.), Basic Research Internship in Neuroscience and Cancer, University of North Florida, Jacksonville; Program in Molecular Medicine (S.D.), University of Massachusetts Medical School, Worcester; Division of Genetics (M.B.B.), Department of Pediatrics, Nemours/Alfred I. duPont Hospital for Children, Wilmington, DE; and Section of Clinical Genetics & Genetic Counseling (S.J.), St. Christopher's Hospital for Children, Philadelphia, PA.
| | - Owen A Ross
- From the Department of Neuroscience (O.L.-B., C.L., K.H., P.G., A.I.S., R.L.W., O.A.R.), Center for Individualized Medicine (P.R.B., J.M.), Department of Health Sciences Research (P.R.B., Y.A.), Department of Neurology (E.E., R.V.-d-C., W.D.F., J.M.), Clinical Research Internship Study Program (P.G.), Department of Neurosurgery (D.M., W.D.F.), and Department of Clinical Genomics (O.A.R.), Mayo Clinic, Jacksonville, FL; Center for Individualized Medicine (E.W.K.), Department of Health Sciences Research (E.W.K.), Department of Laboratory Medicine and Pathology (E.W.K.), Department of Clinical Genomics (E.W.K.), and Department of Biochemistry and Molecular Biology (A.N.S., K.J.C.), Mayo Clinic, Rochester, MN; Department of Biology (K.H., O.A.R.), Basic Research Internship in Neuroscience and Cancer, University of North Florida, Jacksonville; Program in Molecular Medicine (S.D.), University of Massachusetts Medical School, Worcester; Division of Genetics (M.B.B.), Department of Pediatrics, Nemours/Alfred I. duPont Hospital for Children, Wilmington, DE; and Section of Clinical Genetics & Genetic Counseling (S.J.), St. Christopher's Hospital for Children, Philadelphia, PA.
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Oliva Bernal M, Lien S, Wang B, Yang S, Spreafico A, Jang R, Elston S, Jennings S, Jiang H, Haibe-Kains B, Pugh T, Ohashi P, Siu L, Hansen A. Analysis of immune and genomic landscapes of patients with recurrent/metastatic head and neck squamous cell carcinoma (R/M HNSCC) treated with pembrolizumab in the INSPIRE study. Ann Oncol 2018. [DOI: 10.1093/annonc/mdy287.044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Malone E, Jang R, Spreafico A, Weinreb I, Jennings S, Siu L, Hansen A. Genomic profiling and matched therapy for recurrent or metastatic malignant salivary gland tumors. Ann Oncol 2018. [DOI: 10.1093/annonc/mdy287.034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Amoroso RO, Parma AM, Pitcher CR, McConnaughey RA, Jennings S. Comment on "Tracking the global footprint of fisheries". Science 2018; 361:361/6404/eaat6713. [PMID: 30139845 DOI: 10.1126/science.aat6713] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2018] [Accepted: 07/25/2018] [Indexed: 11/02/2022]
Abstract
Kroodsma et al (Reports, 23 February 2018, p. 904) mapped the global footprint of fisheries. Their estimates of footprint and resulting contrasts between the scale of fishing and agriculture are an artifact of the spatial scale of analysis. Reanalyses of their global (all vessels) and regional (trawling) data at higher resolution reduced footprint estimates by factors of >10 and >5, respectively.
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Affiliation(s)
- R O Amoroso
- School of Aquatic and Fishery Sciences, University of Washington, Seattle, WA 98103, USA.
| | - A M Parma
- Centro para el Estudio de Sistemas Marinos, CENPAT, CONICET, 9120 Puerto Madryn, Chubut, Argentina
| | - C R Pitcher
- CSIRO Oceans and Atmosphere, Queensland Biosciences Precinct, St. Lucia, Queensland 4067, Australia
| | - R A McConnaughey
- Alaska Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, 7600 Sand Point Way N.E., Seattle, WA 98115, USA
| | - S Jennings
- International Council for the Exploration of the Sea, H. C. Andersens Boulevard 44-46, 1553 Copenhagen V, Denmark
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Hoover B, Alcaide M, Jennings S, Sin SYW, Edwards SV, Nevitt GA. Ecology can inform genetics: Disassortative mating contributes to MHC polymorphism in Leach's storm-petrels (Oceanodroma leucorhoa). Mol Ecol 2018; 27:3371-3385. [PMID: 30010226 DOI: 10.1111/mec.14801] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2018] [Revised: 05/31/2018] [Accepted: 06/20/2018] [Indexed: 01/03/2023]
Abstract
Studies of MHC-based mate choice in wild populations often test hypotheses on species exhibiting female choice and male-male competition, which reflects the general prevalence of females as the choosy sex in natural systems. Here, we examined mutual mate-choice patterns in a small burrow-nesting seabird, the Leach's storm-petrel (Oceanodroma leucorhoa), using the major histocompatibility complex (MHC). The life history and ecology of this species are extreme: both partners work together to fledge a single chick during the breeding season, a task that requires regularly travelling hundreds of kilometres to and from foraging grounds over a 6- to 8-week provisioning period. Using a 5-year data set unprecedented for this species (n = 1078 adults and 925 chicks), we found a positive relationship between variation in the likelihood of female reproductive success and heterozygosity at Ocle-DAB2, a MHC class IIB locus. Contrary to previous reports rejecting disassortative mating as a mechanism for maintaining genetic polymorphism in this species, here we show that males make significant disassortative mate-choice decisions. Variability in female reproductive success suggests that the most common homozygous females (Ocle-DAB2*01/Ocle-DAB2*01) may be physiologically disadvantaged and, therefore, less preferred as lifelong partners for choosy males. The results from this study support the role of mate choice in maintaining high levels of MHC variability in a wild seabird species and highlight the need to incorporate a broader ecological framework and sufficient sample sizes into studies of MHC-based mating patterns in wild populations in general.
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Affiliation(s)
- Brian Hoover
- Graduate Group in Ecology, University of California, Davis, California
- Department of Neurobiology, Physiology and Behavior, University of California, Davis, California
| | - Miguel Alcaide
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts
- Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia, Canada
| | - Sarah Jennings
- Graduate Group in Ecology, University of California, Davis, California
- Department of Neurobiology, Physiology and Behavior, University of California, Davis, California
| | - Simon Yung Wa Sin
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts
- School of Biological Sciences, The University of Hong Kong, Pokfulam, Hong Kong
| | - Scott V Edwards
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts
| | - Gabrielle A Nevitt
- Graduate Group in Ecology, University of California, Davis, California
- Department of Neurobiology, Physiology and Behavior, University of California, Davis, California
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Pecl GT, Araújo MB, Bell JD, Blanchard J, Bonebrake TC, Chen IC, Clark TD, Colwell RK, Danielsen F, Evengård B, Falconi L, Ferrier S, Frusher S, Garcia RA, Griffis RB, Hobday AJ, Janion-Scheepers C, Jarzyna MA, Jennings S, Lenoir J, Linnetved HI, Martin VY, McCormack PC, McDonald J, Mitchell NJ, Mustonen T, Pandolfi JM, Pettorelli N, Popova E, Robinson SA, Scheffers BR, Shaw JD, Sorte CJB, Strugnell JM, Sunday JM, Tuanmu MN, Vergés A, Villanueva C, Wernberg T, Wapstra E, Williams SE. Biodiversity redistribution under climate change: Impacts on ecosystems and human well-being. Science 2017; 355:355/6332/eaai9214. [PMID: 28360268 DOI: 10.1126/science.aai9214] [Citation(s) in RCA: 926] [Impact Index Per Article: 132.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
Distributions of Earth's species are changing at accelerating rates, increasingly driven by human-mediated climate change. Such changes are already altering the composition of ecological communities, but beyond conservation of natural systems, how and why does this matter? We review evidence that climate-driven species redistribution at regional to global scales affects ecosystem functioning, human well-being, and the dynamics of climate change itself. Production of natural resources required for food security, patterns of disease transmission, and processes of carbon sequestration are all altered by changes in species distribution. Consideration of these effects of biodiversity redistribution is critical yet lacking in most mitigation and adaptation strategies, including the United Nation's Sustainable Development Goals.
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Affiliation(s)
- Gretta T Pecl
- Institute for Marine and Antarctic Studies, Hobart, Tasmania 7001, Australia. .,Centre for Marine Socioecology, Hobart, Tasmania 7001, Australia
| | - Miguel B Araújo
- Department of Biogeography and Global Change, Museo Nacional de Ciencias Naturales, Consejo Superior de Investigaciones Científicas, 28006 Madrid, Spain.,Centro de Investigação em Biodiversidade e Recursos Geneticos, Universidade de Évora, 7000-890 Évora, Portugal.,Department of Biology, Center for Macroecology, Evolution and Climate, University of Copenhagen, Universitetsparken 15, 2100 Copenhagen O, Denmark
| | - Johann D Bell
- Australian National Centre for Ocean Resources and Security, University of Wollongong, New South Wales 2522, Australia.,Betty and Gordon Moore Center for Science and Oceans, Conservation International, Arlington, VA 22202, USA
| | - Julia Blanchard
- Institute for Marine and Antarctic Studies, Hobart, Tasmania 7001, Australia.,Centre for Marine Socioecology, Hobart, Tasmania 7001, Australia
| | - Timothy C Bonebrake
- School of Biological Sciences, The University of Hong Kong, Hong Kong SAR, China
| | - I-Ching Chen
- Department of Life Sciences, National Cheng Kung University, Tainan 701, Taiwan, Republic of China
| | - Timothy D Clark
- Institute for Marine and Antarctic Studies, Hobart, Tasmania 7001, Australia.,Commonwealth Scientific and Industrial Research Organization (CSIRO) Agriculture and Food, Hobart, Tasmania 7000, Australia
| | - Robert K Colwell
- Department of Biology, Center for Macroecology, Evolution and Climate, University of Copenhagen, Universitetsparken 15, 2100 Copenhagen O, Denmark.,Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT 06269, USA.,University of Colorado Museum of Natural History, Boulder, CO 80309, USA.,Departmento de Ecologia, Universidade Federal de Goiás, CP 131, 74.001-970 Goiânia, Goiás, Brazil
| | | | - Birgitta Evengård
- Division of Infectious Diseases, Department of Clinical Microbiology, Umea University, 90187 Umea, Sweden
| | - Lorena Falconi
- College of Marine and Environmental Science, James Cook University, Townsville, Queensland 4811, Australia
| | - Simon Ferrier
- CSIRO Land and Water, Canberra, Australian Capital Territory 2601, Australia
| | - Stewart Frusher
- Institute for Marine and Antarctic Studies, Hobart, Tasmania 7001, Australia.,Centre for Marine Socioecology, Hobart, Tasmania 7001, Australia
| | - Raquel A Garcia
- Centre for Statistics in Ecology, the Environment and Conservation, Department of Statistical Sciences, University of Cape Town, Rondebosch 7701, Cape Town, South Africa.,Centre for Invasion Biology, Department of Botany and Zoology, Faculty of Science, Stellenbosch University, Matieland 7602, South Africa
| | - Roger B Griffis
- National Oceanic and Atmospheric Administration (NOAA) Fisheries Service, Silver Spring, MD 20912, USA
| | - Alistair J Hobday
- Centre for Marine Socioecology, Hobart, Tasmania 7001, Australia.,CSIRO Oceans and Atmosphere, Hobart, Tasmania 7000, Australia
| | | | - Marta A Jarzyna
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06520, USA
| | - Sarah Jennings
- Centre for Marine Socioecology, Hobart, Tasmania 7001, Australia.,Tasmanian School of Business and Economics, University of Tasmania, Hobart, Tasmania 7001, Australia
| | - Jonathan Lenoir
- EDYSAN (FRE 3498 CNRS-UPJV), Université de Picardie Jules Verne, 80037 Amiens Cedex 1, France
| | - Hlif I Linnetved
- Institute of Food and Resource Economics, Faculty of Science, University of Copenhagen, Rolighedsvej 25, DK-1958 Frederiksberg C, Denmark
| | - Victoria Y Martin
- School of Environment, Science and Engineering, Southern Cross University, Lismore, New South Wales 2480, Australia
| | | | - Jan McDonald
- Centre for Marine Socioecology, Hobart, Tasmania 7001, Australia.,Faculty of Law, University of Tasmania, Hobart, Tasmania 7001, Australia
| | - Nicola J Mitchell
- School of Biological Sciences, The University of Western Australia, Crawley, Western Australia 6009, Australia
| | - Tero Mustonen
- Snowchange Cooperative, University of Eastern Finland, Joensuu, FIN 80100 Finland
| | - John M Pandolfi
- School of Biological Sciences, Autralian Research Council (ARC) Centre of Excellence for Coral Reef Studies, The University of Queensland, Brisbane, Queensland 4072, Australia
| | - Nathalie Pettorelli
- Institute of Zoology, Zoological Society of London, Regent's Park, NW1 4RY London, UK
| | - Ekaterina Popova
- National Oceanography Centre, University of Southampton Waterfront Campus, European Way, Southampton, SO14 3ZH, UK
| | - Sharon A Robinson
- Centre for Sustainable Ecosystem Solutions, School of Biological Sciences, University of Wollongong, Wollongong, New South Wales 2522, Australia
| | - Brett R Scheffers
- Department of Wildlife Ecology and Conservation, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, FL 32611, USA
| | - Justine D Shaw
- Centre for Biodiversity and Conservation Science, School of Biological Sciences, The University of Queensland, St Lucia, Queensland 4072, Australia
| | - Cascade J B Sorte
- Department of Ecology and Evolutionary Biology, University of California, Irvine, CA 92697, USA
| | - Jan M Strugnell
- Centre for Sustainable Tropical Fisheries and Aquaculture, College of Science and Engineering, James Cook University, Townsville, 4811 Queensland, Australia.,Department of Ecology, Environment and Evolution, School of Life Sciences, La Trobe University, Melbourne, Victoria 3086, Australia
| | - Jennifer M Sunday
- Biodiversity Research Centre, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada
| | - Mao-Ning Tuanmu
- Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan, Republic of China
| | - Adriana Vergés
- Centre for Marine Bio-Innovation and Evolution and Ecology Research Centre, School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales 2052, Australia
| | - Cecilia Villanueva
- Institute for Marine and Antarctic Studies, Hobart, Tasmania 7001, Australia.,Centre for Marine Socioecology, Hobart, Tasmania 7001, Australia
| | - Thomas Wernberg
- School of Biological Sciences, The University of Western Australia, Crawley, Western Australia 6009, Australia.,Oceans Institute, The University of Western Australia, Perth, Western Australia 6009, Australia
| | - Erik Wapstra
- School of Biological Sciences, University of Tasmania, Hobart, Tasmania 7001, Australia
| | - Stephen E Williams
- College of Marine and Environmental Science, James Cook University, Townsville, Queensland 4811, Australia
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Pearce DS, Hoover BA, Jennings S, Nevitt GA, Docherty KM. Morphological and genetic factors shape the microbiome of a seabird species (Oceanodroma leucorhoa) more than environmental and social factors. Microbiome 2017; 5:146. [PMID: 29084611 PMCID: PMC5663041 DOI: 10.1186/s40168-017-0365-4] [Citation(s) in RCA: 51] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2017] [Accepted: 10/26/2017] [Indexed: 05/10/2023]
Abstract
BACKGROUND The microbiome provides multiple benefits to animal hosts that can profoundly impact health and behavior. Microbiomes are well-characterized in humans and other animals in controlled settings, yet assessments of wild bird microbial communities remain vastly understudied. This is particularly true for pelagic seabirds with unique life histories that differ from terrestrial bird species. This study was designed to examine how morphological, genetic, environmental, and social factors affect the microbiome of a burrow-nesting seabird species, Leach's storm petrel (Oceanodroma leucorhoa). These seabirds are highly olfactory and may rely on microbiome-mediated odor cues during mate selection. Composition and structure of bacterial communities associated with the uropygial gland and brood patch were assessed using 16S rRNA amplicon-based Illumina Mi-Seq analysis and compared to burrow-associated bacterial communities. This is the first study to examine microbial diversity associated with multiple body sites on a seabird species. RESULTS Results indicate that sex and skin site contribute most to bacterial community variation in Leach's storm petrels and that major histocompatibility complex (MHC) genotype may impact the composition of bacterial assemblages in males. In contrast to terrestrial birds and other animals, environmental and social interactions do not significantly influence storm petrel-associated bacterial assemblages. Thus, individual morphological and genetic influences outweighed environmental and social factors on microbiome composition. CONCLUSIONS Contrary to observations of terrestrial birds, microbiomes of Leach's storm petrels vary most by the sex of the bird and by the body site sampled, rather than environmental surroundings or social behavior.
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Affiliation(s)
- Douglas S. Pearce
- Department of Biological Sciences, Western Michigan University, 1903 W Michigan Ave, Kalamazoo, MI 49008 USA
| | - Brian A. Hoover
- Department of Neurobiology, Physiology, and Behavior, College of Biological Sciences, One Shields Avenue, University of California, Davis, CA 95616 USA
| | - Sarah Jennings
- Department of Neurobiology, Physiology, and Behavior, College of Biological Sciences, One Shields Avenue, University of California, Davis, CA 95616 USA
| | - Gabrielle A. Nevitt
- Department of Neurobiology, Physiology, and Behavior, College of Biological Sciences, One Shields Avenue, University of California, Davis, CA 95616 USA
| | - Kathryn M. Docherty
- Department of Biological Sciences, Western Michigan University, 1903 W Michigan Ave, Kalamazoo, MI 49008 USA
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36
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Marzloff MP, Melbourne-Thomas J, Hamon KG, Hoshino E, Jennings S, Van Putten IE, Pecl GT. Modelling marine community responses to climate-driven species redistribution to guide monitoring and adaptive ecosystem-based management. Glob Chang Biol 2017; 23:1360. [PMID: 28211250 DOI: 10.1111/gcb.13607] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Affiliation(s)
- Martin Pierre Marzloff
- Institute for Marine and Antarctic Studies (IMAS), University of Tasmania, Private Bag 129, Hobart, TAS, 7001, Australia
| | - Jessica Melbourne-Thomas
- Department of the Environment, Australian Antarctic Division, Channel Highway, Kingston, TAS, 7005, Australia
- Antarctic Climate and Ecosystems Cooperative Research Centre, Private Bag 80, Hobart, TAS, 7001, Australia
| | - Katell G Hamon
- LEI - Wageningen UR, PO Box 29703, 2502 LS, 'S Gravenhage, The Netherlands
| | - Eriko Hoshino
- Tasmanian School of Business and Economics, University of Tasmania, Private Bag 84, Hobart, TAS, 7001, Australia
- CSIRO Oceans and Atmosphere, Castray Esplanade, Hobart, TAS, 7001, Australia
| | - Sarah Jennings
- Tasmanian School of Business and Economics, University of Tasmania, Private Bag 84, Hobart, TAS, 7001, Australia
- Centre for Marine Socioecology, University of Tasmania, Hobart, TAS, 7001, Australia
| | - Ingrid E Van Putten
- CSIRO Oceans and Atmosphere, Castray Esplanade, Hobart, TAS, 7001, Australia
- Centre for Marine Socioecology, University of Tasmania, Hobart, TAS, 7001, Australia
| | - Gretta T Pecl
- Institute for Marine and Antarctic Studies (IMAS), University of Tasmania, Private Bag 129, Hobart, TAS, 7001, Australia
- Centre for Marine Socioecology, University of Tasmania, Hobart, TAS, 7001, Australia
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Jennings S, Cheung B, Rupert A, Schultz K, Craig G. Flight-Test of a Tactile Situational Awareness System in a Land-based Deck Landing Task. ACTA ACUST UNITED AC 2016. [DOI: 10.1177/154193120404800131] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The National Research Council of Canada and Defence Research and Development Canada flight-tested the U.S. Naval Aerospace Medical Research Laboratory's Tactile Situational Awareness System (TSAS) in a dynamic task. The TSAS vest uses small pneumatic actuators or ‘tactors’ to transmit information to the pilot. Eleven pilots used the TSAS to cue horizontal axis performance in a land-based deck landing task flown in the NRC Bell 205 helicopter. Pilots tracked a vertically moving target with and without the TSAS in good and degraded visual conditions. The TSAS effectively cued longitudinal fore/aft drifts and reduced RMS error. It had less effect on lateral positioning error, possibly due to the presence of strong visual cues. Pilot situational awareness during degraded visual environment conditions in high sea states was significantly improved by the TSAS, as measured by the China Lake situational awareness rating scale. No change in workload, as measured by Modified Cooper Harper Workload Scale, was attributable to the TSAS use. The improvements in situational awareness and the reduction in longitudinal error suggest that the TSAS would be beneficial for helicopter ship deck landing.
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Affiliation(s)
- S. Jennings
- National Research Council Ottawa, Ontario, Canada
| | - B. Cheung
- Defence Research & Development Canada Toronto, Ontario, Canada
| | - A. Rupert
- Naval Aerospace Medical Research Laboratory Pensacola, Florida
| | - K. Schultz
- Naval Aerospace Medical Research Laboratory Pensacola, Florida
| | - G. Craig
- National Research Council Ottawa, Ontario, Canada
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Abstract
This paper describes an investigation of a workload measurement technique based on pilot control movements. The Dynamic Interface Modeling and Simulation System Product Metric (DIMSS PM) assumes that pilot control activity can be used to evaluate pilot workload. Three qualified test pilots flew the fly-bywire NRC Bell 205 helicopter in a short test program that compared the DIMSS PM with subjective workload ratings and handling qualities ratings. The pilots performed a variation of an ADS-33E bob-up with varying levels of simulated turbulence and modified cyclic control characteristics. Good agreement was found for most in-flight test conditions between DIMSS Workload Metric scores and subjective workload ratings from the Bedford Workload Scale and Cooper-Harper handling qualities ratings. While, the DIMSS Workload Metric did not accurately reflect workload increases due to variations in the cyclic stick characteristics, the metric shows promise as an objective measurement tool of pilot workload in well-defined tests.
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Affiliation(s)
- S. Jennings
- National Research Council Ottawa, Ontario, Canada
| | - G. Craig
- National Research Council Ottawa, Ontario, Canada
| | | | - Kris Ellis
- National Research Council Ottawa, Ontario, Canada
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39
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Marre JB, Thébaud O, Pascoe S, Jennings S, Boncoeur J, Coglan L. Is economic valuation of ecosystem services useful to decision-makers? Lessons learned from Australian coastal and marine management. J Environ Manage 2016; 178:52-62. [PMID: 27136617 DOI: 10.1016/j.jenvman.2016.04.014] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2015] [Revised: 02/01/2016] [Accepted: 04/07/2016] [Indexed: 06/05/2023]
Abstract
Economic valuation of ecosystem services is widely advocated as being useful to support ecosystem management decision-making. However, the extent to which it is actually used or considered useful in decision-making is poorly documented. This literature blindspot is explored with an application to coastal and marine ecosystems management in Australia. Based on a nation-wide survey of eighty-eight decision-makers representing a diversity of management organizations, the perceived usefulness and level of use of economic valuation of ecosystem services, in support of coastal and marine management, are examined. A large majority of decision-makers are found to be familiar with economic valuation and consider it useful - even necessary - in decision-making, although this varies across groups of decision-makers. However, most decision-makers never or rarely use economic valuation. The perceived level of importance and trust in estimated dollar values differ across ecosystem services, and are especially high for values that relate to commercial activities. A number of factors are also found to influence respondent's use of economic valuation. Such findings concur with conclusions from other studies on the usefulness and use of ESV in environmental management decision-making. They also demonstrate the strength of the survey-based approach developed in this application to examine this issue in a variety of contexts.
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Affiliation(s)
- Jean-Baptiste Marre
- Université de Bretagne Occidentale, UMR AMURE, Brest, France; CSIRO Wealth from Oceans Flagship, Marine and Atmospheric Research, Brisbane, Australia; School of Economics and Finance, Queensland University of Technology, Brisbane, Australia.
| | - Olivier Thébaud
- Ifremer, UMR M101, AMURE, Unité d'Économie Maritime, Brest, France; CSIRO Wealth from Oceans Flagship, Marine and Atmospheric Research, Brisbane, Australia; School of Economics and Finance, Queensland University of Technology, Brisbane, Australia
| | - Sean Pascoe
- CSIRO Wealth from Oceans Flagship, Marine and Atmospheric Research, Brisbane, Australia; Center for Marine Socioecology, University of Tasmania, Hobart, Australia
| | - Sarah Jennings
- Tasmanian School of Business and Economics, University of Tasmania, Hobart, Australia; Center for Marine Socioecology, University of Tasmania, Hobart, Australia
| | - Jean Boncoeur
- Université de Bretagne Occidentale, UMR AMURE, Brest, France
| | - Louisa Coglan
- School of Economics and Finance, Queensland University of Technology, Brisbane, Australia
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Marzloff MP, Melbourne-Thomas J, Hamon KG, Hoshino E, Jennings S, van Putten IE, Pecl GT. Modelling marine community responses to climate-driven species redistribution to guide monitoring and adaptive ecosystem-based management. Glob Chang Biol 2016; 22:2462-2474. [PMID: 26990671 DOI: 10.1111/gcb.13285] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2015] [Revised: 03/08/2016] [Accepted: 03/08/2016] [Indexed: 06/05/2023]
Abstract
As a consequence of global climate-driven changes, marine ecosystems are experiencing polewards redistributions of species - or range shifts - across taxa and throughout latitudes worldwide. Research on these range shifts largely focuses on understanding and predicting changes in the distribution of individual species. The ecological effects of marine range shifts on ecosystem structure and functioning, as well as human coastal communities, can be large, yet remain difficult to anticipate and manage. Here, we use qualitative modelling of system feedback to understand the cumulative impacts of multiple species shifts in south-eastern Australia, a global hotspot for ocean warming. We identify range-shifting species that can induce trophic cascades and affect ecosystem dynamics and productivity, and evaluate the potential effectiveness of alternative management interventions to mitigate these impacts. Our results suggest that the negative ecological impacts of multiple simultaneous range shifts generally add up. Thus, implementing whole-of-ecosystem management strategies and regular monitoring of range-shifting species of ecological concern are necessary to effectively intervene against undesirable consequences of marine range shifts at the regional scale. Our study illustrates how modelling system feedback with only limited qualitative information about ecosystem structure and range-shifting species can predict ecological consequences of multiple co-occurring range shifts, guide ecosystem-based adaptation to climate change and help prioritise future research and monitoring.
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Affiliation(s)
- Martin Pierre Marzloff
- Institute for Marine and Antarctic Studies (IMAS), University of Tasmania, Private Bag 129, Hobart, Tas., 7001, Australia
| | - Jessica Melbourne-Thomas
- Department of the Environment, Australian Antarctic Division, Channel Highway, Kingston, Tas., 7005, Australia
- Antarctic Climate and Ecosystems Cooperative Research Centre, Private Bag 80, Hobart, Tas., 7001, Australia
| | - Katell G Hamon
- LEI - Wageningen UR, PO Box 29703, 2502 LS, 'S Gravenhage, The Netherlands
| | - Eriko Hoshino
- Tasmanian School of Business and Economics, University of Tasmania, Private Bag 84, Hobart, Tas., 7001, Australia
- CSIRO Oceans and Atmosphere, Castray Esplanade, Hobart, Tas., 7001, Australia
| | - Sarah Jennings
- Tasmanian School of Business and Economics, University of Tasmania, Private Bag 84, Hobart, Tas., 7001, Australia
- Centre for Marine Socioecology, University of Tasmania, Hobart, Tas., 7001, Australia
| | - Ingrid E van Putten
- CSIRO Oceans and Atmosphere, Castray Esplanade, Hobart, Tas., 7001, Australia
- Centre for Marine Socioecology, University of Tasmania, Hobart, Tas., 7001, Australia
| | - Gretta T Pecl
- Institute for Marine and Antarctic Studies (IMAS), University of Tasmania, Private Bag 129, Hobart, Tas., 7001, Australia
- Centre for Marine Socioecology, University of Tasmania, Hobart, Tas., 7001, Australia
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Marre JB, Pascoe S, Thébaud O, Jennings S, Boncoeur J, Coglan L. Information preferences for the evaluation of coastal development impacts on ecosystem services: A multi-criteria assessment in the Australian context. J Environ Manage 2016; 173:141-150. [PMID: 26861223 DOI: 10.1016/j.jenvman.2016.01.025] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2015] [Revised: 12/21/2015] [Accepted: 01/21/2016] [Indexed: 06/05/2023]
Abstract
Ecosystem based management requires the integration of various types of assessment indicators. Understanding stakeholders' information preferences is important, in selecting those indicators that best support management and policy. Both the preferences of decision-makers and the general public may matter, in democratic participatory management institutions. This paper presents a multi-criteria analysis aimed at quantifying the relative importance to these groups of economic, ecological and socio-economic indicators usually considered when managing ecosystem services in a coastal development context. The Analytic Hierarchy Process (AHP) is applied within two nationwide surveys in Australia, and preferences of both the general public and decision-makers for these indicators are elicited and compared. Results show that, on average across both groups, the priority in assessing a generic coastal development project is for the ecological assessment of its impacts on marine biodiversity. Ecological assessment indicators are globally preferred to both economic and socio-economic indicators regardless of the nature of the impacts studied. These results are observed for a significantly larger proportion of decision-maker than general public respondents, questioning the extent to which the general public's preferences are well reflected in decision-making processes.
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Affiliation(s)
- Jean-Baptiste Marre
- Université de Bretagne Occidentale, UMR AMURE, Brest, France; CSIRO Wealth from Oceans Flagship, Marine and Atmospheric Research, Brisbane, Australia; School of Economics and Finance, Queensland University of Technology, Brisbane, Australia.
| | - Sean Pascoe
- CSIRO Wealth from Oceans Flagship, Marine and Atmospheric Research, Brisbane, Australia
| | - Olivier Thébaud
- Ifremer, UMR M101, AMURE, Unité d'Économie Maritime, Brest, France; School of Economics and Finance, Queensland University of Technology, Brisbane, Australia
| | - Sarah Jennings
- Tasmanian School of Business and Economics, University of Tasmania, Hobart, Australia
| | - Jean Boncoeur
- Université de Bretagne Occidentale, UMR AMURE, Brest, France
| | - Louisa Coglan
- School of Economics and Finance, Queensland University of Technology, Brisbane, Australia
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42
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Williams K, Andrie K, Cartoceti A, French S, Goldsmith D, Jennings S, Priestnall SL, Wilson D, Jutkowitz A. Pulmonary Veno-Occlusive Disease. Vet Pathol 2016; 53:813-22. [DOI: 10.1177/0300985815626572] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Pulmonary hypertension is a well-known though poorly characterized disease in veterinary medicine. In humans, pulmonary veno-occlusive disease (PVOD) is a rare cause of severe pulmonary hypertension with a mean survival time of 2 years without lung transplantation. Eleven adult dogs (5 males, 6 females; median age 10.5 years, representing various breeds) were examined following the development of severe respiratory signs. Lungs of affected animals were evaluated morphologically and with immunohistochemistry for alpha smooth muscle actin, desmin, CD31, CD3, CD20, and CD204. All dogs had pulmonary lesions consistent with PVOD, consisting of occlusive remodeling of small- to medium-sized pulmonary veins, foci of pulmonary capillary hemangiomatosis (PCH), and accumulation of hemosiderophages; 6 of 11 dogs had substantial pulmonary arterial medial and intimal thickening. Ultrastructural examination and immunohistochemistry showed that smooth muscle cells contributed to the venous occlusion. Increased expression of CD31 was evident in regions of PCH indicating increased numbers of endothelial cells in these foci. Spindle cells strongly expressing alpha smooth muscle actin and desmin co-localized with foci of PCH; similar cells were present but less intensely labeled elsewhere in non-PCH alveoli. B cells and macrophages, detected by immunohistochemistry, were not co-localized with the venous lesions of canine PVOD; small numbers of CD3-positive T cells were occasionally in and around the wall of remodeled veins. These findings indicate a condition in dogs with clinically severe respiratory disease and pathologic features resembling human PVOD, including foci of pulmonary venous remodeling and PCH.
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Affiliation(s)
- K. Williams
- College of Veterinary Medicine, Michigan State University, East Lansing, MI, USA
| | - K. Andrie
- College of Veterinary Medicine, Michigan State University, East Lansing, MI, USA
| | - A. Cartoceti
- School of Veterinary Medicine, University of California, Davis, CA, USA
| | - S. French
- College of Veterinary Medicine, Michigan State University, East Lansing, MI, USA
| | - D. Goldsmith
- School of Veterinary Medicine, University of California, Davis, CA, USA
| | - S. Jennings
- Cummings School of Veterinary Medicine, Tufts University, North Grafton, MA, USA
| | | | - D. Wilson
- School of Veterinary Medicine, University of California, Davis, CA, USA
| | - A. Jutkowitz
- College of Veterinary Medicine, Michigan State University, East Lansing, MI, USA
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Thébaud O, Boschetti F, Jennings S, Smith AD, Pascoe S. Of sets of offsets: Cumulative impacts and strategies for compensatory restoration. Ecol Modell 2015. [DOI: 10.1016/j.ecolmodel.2015.04.022] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Byrne D, O'Connor L, Jennings S, Bennett K, Murphy AW. A Survey of GPs Awareness and Use of Risk Assessment Tools and Cardiovascular Disease Prevention Guidelines. Ir Med J 2015; 108:204-207. [PMID: 26349349] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Cardiovascular disease (CVD) is the leading cause of death worldwide. This study aimed to benchmark awareness and use of CVD risk assessment (RA) tools and prevention guidelines in Irish general practice. 493 (18%) Irish general practitioners (GPs) were invited to participate in a cross-sectional study in 2011. 213 (43%) GPs responded with most being male (n = 128, 58.2%) and aged ≥ 45 years (n = 124, 56.8%). While 197 (92.5%) GPs were aware of at least one RA tool, only 69 (32.4%) GPs reported frequent use. 187 (87.8%) GPs were aware of one or more CVD prevention guidelines with 115 (54.0%) GPs reporting frequent use of at least one guideline. No age or gender difference observed. Barriers to implementation of CVD prevention guidelines were lack of remuneration, too many CVD guidelines and time constraints. Most Irish GPs were aware of RA tools and CVD prevention guidelines with half reporting frequent use of guidelines.
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Nadal J, Varzaly J, Jennings S, Vadivelu A, Chan J, Xu R, Thakur S, Yoshimoto A, Viana F. Mediastinal abscess following acupuncture: Case report and review of literature. Heart Lung Circ 2015. [DOI: 10.1016/j.hlc.2014.12.152] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Kristensen SD, Laut KG, Fajadet J, Kaifoszova Z, Kala P, Di Mario C, Wijns W, Clemmensen P, Agladze V, Antoniades L, Alhabib KF, De Boer MJ, Claeys MJ, Deleanu D, Dudek D, Erglis A, Gilard M, Goktekin O, Guagliumi G, Gudnason T, Hansen KW, Huber K, James S, Janota T, Jennings S, Kajander O, Kanakakis J, Karamfiloff KK, Kedev S, Kornowski R, Ludman PF, Merkely B, Milicic D, Najafov R, Nicolini FA, No c M, Ostojic M, Pereira H, Radovanovic D, Sabate M, Sobhy M, Sokolov M, Studencan M, Terzic I, Wahler S, Widimsky P. Corrigendum to: Reperfusion therapy for ST elevation acute myocardial infarction 2010/2011: current status in 37 ESC countries. Eur Heart J 2014. [DOI: 10.1093/eurheartj/ehu333] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Jennings S, Bennett K, Shelley E, Kearney P, Daly K, Fennell W. Trends in percutaneous coronary intervention and angiography in Ireland, 2004-2011: Implications for Ireland and Europe. Int J Cardiol Heart Vessel 2014; 4:35-39. [PMID: 29450183 PMCID: PMC5802397 DOI: 10.1016/j.ijchv.2014.08.001] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/29/2014] [Accepted: 08/01/2014] [Indexed: 01/13/2023]
Abstract
BACKGROUND/OBJECTIVES To study temporal trends in crude and age standardised rates of cardiac catheterisation and percutaneous coronary intervention (PCI) in Ireland, 2004-2011. METHODS Two data sources were used: a) a survey of publicly and privately funded hospitals with cardiac catheter laboratories to obtain the annual number of procedures performed and b) anonymised data from the Hospital In-Patient Enquiry (HIPE) for angiography and PCI in acute publicly funded hospitals; age standardised rates were calculated to study trends over time. RESULTS From 2004 to 2011 the crude rate of angiography and PCI increased by 47.8% and 35.9% respectively, with rates of 6689 and 1825 per million population in 2011. Following age standardisation, however, PCI activity showed a non-significant decrease over time. The PCI to angiography ratio decreased from 30% to 27% and PCI was performed predominantly for stable coronary heart disease (54%) in 2011. CONCLUSION Angiography and PCI rates have increased in Ireland but PCI crude and age adjusted rates show divergent trends. While Ireland differs from USA and UK, with a higher proportion of PCI being performed for stable CHD in recent years, little systematic surveillance of cardiological interventions within Europe is available to benchmark improvements in Ireland.
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Affiliation(s)
- S. Jennings
- Department of Public Health, HSE, Dublin, Ireland
| | - K. Bennett
- Department of Pharmacology and Therapeutics, St James Hospital, Dublin, Ireland
| | - E. Shelley
- Department of Public Health, HSE, Dublin, Ireland
| | - P. Kearney
- Cardiology Department, Cork University Hospital, Cork, Ireland
| | - K. Daly
- Cardiology Department, University College Hospital Galway, Galway, Ireland
| | - W. Fennell
- Cardiology Department, Bon Secours Hospital, Cork, Ireland
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Gleeson LE, Jennings S, Gavin R, McConaghy D, Collins DR. Primary care in nursing homes revisited: survey of the experiences of primary care physicians. Ir Med J 2014; 107:234-236. [PMID: 25282960] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
The Irish Health Information and Quality Authority (HIQA) published National Quality Standards for Residential Care Settings for Older People in 2009. We reported on experiences of general practitioners (GPs) in Dublin caring for nursing home patients (NHPs) in 2006. We revisit these experiences following publication of HIQA's standards. 400 GPs received an anonymous postal survey. Of 204 respondents, 145 (71%) felt NHPs required more contact time and 124 (61%) reported more complex consultations compared to other patients. Only 131 (64%) felt adequately trained in gerontology. 143 (70%) reported access to specialist advice, but only 6 (3%) reported a change in this following HIOA standards. 65 (32%) had witnessed substandard care in a NH, of which 16 (25%) made no report, similar figures to 2006. There remains similar levels of concern regarding patient complexity, substandard care, access to specialist support and training in the care of NHPs. Many GPs expressed uncertainty regarding their role in implementing HIQA standards.
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Loftus A, Loftus BG, Muircheartaigh IO, Newell J, Scarrott C, Jennings S. Acute childhood asthma in Galway city from 1985-2005: relationship to air pollution and climate. Ir Med J 2014; 107:198-201. [PMID: 25226712] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
We examine the relationship of air pollution and climatic variables to asthma admission rates of children in Galway city over a 21 year period. Paediatric asthma admissions were recorded from 1985-2005, and admission rates per thousand calculated for pre-school (1-4 years), school aged (5-14 years) and all children (1-14 years) on a monthly and annual basis. These data were compared to average monthly and annual climatic variables (rainfall, humidity, sunshine, wind speed and temperature) and black smoke levels for the city. Simple correlation and Poisson Generalized Additive Models (GAM) were used. Admission rates each month are significantly correlated with smoke levels (p = 0.007). Poisson GAM also shows a relationship between admissions and pollution (p = 0.07). Annual smoke levels impact more on admission rates of preschoolers (p = 0.04) than school age children (p = 0.10). These data suggest that air pollution is an important factor in the epidemiology of acute childhood asthma.
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