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Barhoumi M, Liu J, Hübner W, Lefkidis G. Using single and double laser pulses on the molecular Ni 4@C 48H 36 system to design integrated nanospintronic units. Phys Chem Chem Phys 2024. [PMID: 38780108 DOI: 10.1039/d4cp00523f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/25/2024]
Abstract
The accomplishment of long-distance spin transfer scenarios between several magnetic centers is a big challenge for building and supporting spin-logic units for developing future all-optical magnetic unit operations. Using high-level quantum chemistry theory CCSD and EOM-CCSD, we systematically study the ultrafast laser-induced spin-dynamics process on a carbon-based material, to which four magnetic centers are attached. We show that the CCSD method with the 6-31G basis set calculation is sensitive to the C-Ni bond length. The spin density distribution, which is computed using EOM-CCSD with LanL2DZ+ECP calculations, Mulliken population analysis, including spin-orbit-coupling (SOC) and a magnetic field, fulfills the requirements for achieving spin dynamics processes. Different local spin-flip and spin-transfer processes are accomplished within the subpicosecond regime. The impact of the propagation direction of the laser pulse by switching their polar and the azimuthal angles in spherical coordinates on the spin dynamics processes is analyzed. Double laser pulses with time delay δt ≥ 200 × FWHM yield in a realistic magnetic field gradient selectively a lateral resolution, which corresponds to distances smaller than the CMOS scale (2 nm in 2024) while our system size is comparable to the CMOS scale. Here Λ and V processes with two quasi-degenerate intermediate levels are used. We propose a model of an integrated spin-logic processor created from an array of individual spin-logic blocks, which are realized by four magnetic centers Ni. The findings of this study demonstrate the enormous potential of using laser-induced spin dynamics as the fundamental mechanism for future molecular magnetic technology.
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Affiliation(s)
- Mohamed Barhoumi
- Deutsche Telekom Chair of Communication Networks, Institute of Communication Technology, Faculty of Electrical and Computer Engineering, Technische Universität Dresden, Dresden, Germany
- Quantum Communication Networks (QCNets) Research Group, Institute of Communication Technology, Faculty of Electrical and Computer Engineering, Technische Universität Dresden, Dresden, Germany
- Department of Physics, Rheinland-Pfälzische Technische Universität Kaiserslautern (RPTU) Kaiserslautern-Landau, P.O. Box 3049, 67653 Kaiserslautern, Germany.
| | - Jing Liu
- Institute of Theoretical Chemistry, Ulm University, 89081 Ulm, Germany
| | - Wolfgang Hübner
- Department of Physics, Rheinland-Pfälzische Technische Universität Kaiserslautern (RPTU) Kaiserslautern-Landau, P.O. Box 3049, 67653 Kaiserslautern, Germany.
| | - Georgios Lefkidis
- Department of Physics, Rheinland-Pfälzische Technische Universität Kaiserslautern (RPTU) Kaiserslautern-Landau, P.O. Box 3049, 67653 Kaiserslautern, Germany.
- Department of Engineering Mechanics, Northwestern Polytechnical University, 710072 Xi'an, China
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2
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Tan RL, Sciandra F, Hübner W, Bozzi M, Reimann J, Schoch S, Brancaccio A, Blaess S. Missense mutation (C667F) in murine β-dystroglycan causes embryonic lethality, myopathy and blood-brain barrier destabilization. Dis Model Mech 2024:dmm.050594. [PMID: 38616731 DOI: 10.1242/dmm.050594] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Accepted: 04/08/2024] [Indexed: 04/16/2024] Open
Abstract
Dystroglycan (DG) is an extracellular matrix receptor consisting of an α- and a β-DG subunit encoded by the DAG1 gene. The homozygous mutation (c.2006G>T, p.Cys669Phe) in β-DG causes Muscle-Eye-Brain disease with multicystic leukodystrophy in humans. In a mouse model of this primary dystroglycanopathy, approximately two-thirds of homozygous embryos fail to develop to term. Mutant mice that are born undergo a normal postnatal development but show a late-onset myopathy with partially penetrant histopathological changes and an impaired performance on an activity wheel. Their brains and eyes are structurally normal, but the localization of mutant β-DG is altered in the glial perivascular endfeet resulting in a perturbed protein composition of the blood-brain and blood-retina barrier. In addition, α- and β-DG protein levels are significantly reduced in muscle and brain of mutant mice. Due to the partially penetrant developmental phenotype of the C669F-β-DG mice, they represent a novel and highly valuable mouse model to study the molecular effects of β-DG functional alterations both during embryogenesis and in mature muscle, brain and eye, and to gain insight into the pathogenesis of primary dystroglycanopathies.
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Affiliation(s)
- Rui Lois Tan
- Neurodevelopmental Genetics, Institute of Reconstructive Neurobiology, Medical Faculty, University of Bonn, 53127 Bonn, Germany
| | - Francesca Sciandra
- Institute of Chemical Sciences and Technologies "Giulio Natta" (SCITEC)-CNR, Rome, Italy
| | - Wolfgang Hübner
- Biomolecular Photonics, Faculty of Physics, Bielefeld University, 33615 Bielefeld, Germany
| | - Manuela Bozzi
- Institute of Chemical Sciences and Technologies "Giulio Natta" (SCITEC)-CNR, Rome, Italy
- Dipartimento di Scienze Biotecnologiche di Base, Cliniche Intensivologiche e Perioperatorie. Sezione di Biochimica. Università Cattolica del Sacro Cuore di Roma, 00168 Rome, Italy
| | - Jens Reimann
- Department of Neurology, Neuromuscular Diseases Section, University Hospital Bonn, 53127 Bonn, Germany
| | - Susanne Schoch
- Synaptic Neuroscience Team, Institute of Neuropathology, Medical Faculty, University of Bonn, 53127 Bonn, Germany
| | - Andrea Brancaccio
- Institute of Chemical Sciences and Technologies "Giulio Natta" (SCITEC)-CNR, Rome, Italy
- School of Biochemistry, University Walk, University of Bristol, Bristol BS8 1TD, UK
| | - Sandra Blaess
- Neurodevelopmental Genetics, Institute of Reconstructive Neurobiology, Medical Faculty, University of Bonn, 53127 Bonn, Germany
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Xu S, Zhang Y, Zang C, Liu J, Jin W, Lefkidis G, Hübner W, Li C. Unlocking Ultrafast Spin Transfer in Single-Magnetic-Center-Decorated Triangulene Systems. J Phys Chem Lett 2024; 15:3929-3937. [PMID: 38568181 DOI: 10.1021/acs.jpclett.4c00469] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/12/2024]
Abstract
Triangulene, as a typical open-shell graphene fragment, has attracted widespread attention for nanospintronics, promising to serve as building blocks in spin-logic units. Here, using ab initio calculations, we systematically study the laser-induced ultrafast spin-dynamic processes on triangulene nanoflakes, decorated with a transition-metal atom. The results reveal a competition between the induced magnetic center and the carbon edge of the triangulene, resulting in the coexistence of dual spin-density-distribution patterns on such single-magnetic-center systems, thus opening up possibilities of complex spin-dynamic scenarios beyond the spin flip. Interestingly, no matter what direction the spin points to, it is possible to achieve reversible spin-transfer processes using the same laser pulse. Increasing the pool of elementary processes to contain not only spin-direction-dependent but also spin-direction-independent scenarios allows for more versatile spin-logic operations, including classical handling of information and quantum computing. In the present work, we suggest downscaling nanospintronic devices by integrating triangulene-based nanostructures.
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Affiliation(s)
- Shuai Xu
- Department of Engineering Mechanics, Northwestern Polytechnical University, Xi'an 710072, China
- Research & Development Institute of Northwestern Polytechnical University in Shenzhen, Shenzhen 518057, China
| | - Yiming Zhang
- Department of Engineering Mechanics, Northwestern Polytechnical University, Xi'an 710072, China
- School of Science, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Congfei Zang
- Department of Engineering Mechanics, Northwestern Polytechnical University, Xi'an 710072, China
- Research & Development Institute of Northwestern Polytechnical University in Shenzhen, Shenzhen 518057, China
| | - Jing Liu
- Institute of Theoretical Chemistry, Ulm University, 89081 Ulm, Germany
| | - Wei Jin
- School of Physics and Information Technology, Shaanxi Normal University, Xi'an 710119, China
| | - Georgios Lefkidis
- Department of Engineering Mechanics, Northwestern Polytechnical University, Xi'an 710072, China
- Department of Physics, RPTU Kaiserslautern-Landau, P.O. Box 3049, 67653 Kaiserslautern, Germany
| | - Wolfgang Hübner
- Department of Physics, RPTU Kaiserslautern-Landau, P.O. Box 3049, 67653 Kaiserslautern, Germany
| | - Chun Li
- Department of Engineering Mechanics, Northwestern Polytechnical University, Xi'an 710072, China
- Research & Development Institute of Northwestern Polytechnical University in Shenzhen, Shenzhen 518057, China
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Sciandra F, Desiderio C, Vincenzoni F, Viscuso S, Bozzi M, Hübner W, Jimenez-Gutierrez GE, Cisneros B, Brancaccio A. Analysis of the GFP-labelled β-dystroglycan interactome in HEK-293 transfected cells reveals novel intracellular networks. Biochem Biophys Res Commun 2024; 703:149656. [PMID: 38364681 DOI: 10.1016/j.bbrc.2024.149656] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Revised: 01/19/2024] [Accepted: 02/06/2024] [Indexed: 02/18/2024]
Abstract
Dystroglycan (DG) is a cell adhesion complex that is widely expressed in tissues. It is composed by two subunits, α-DG, a highly glycosylated protein that interacts with several extracellular matrix proteins, and transmembrane β-DG whose, cytodomain binds to the actin cytoskeleton. Glycosylation of α-DG is crucial for functioning as a receptor for its multiple extracellular binding partners. Perturbation of α-DG glycosylation is the central event in the pathogenesis of severe pathologies such as muscular dystrophy and cancer. β-DG acts as a scaffold for several cytoskeletal and nuclear proteins and very little is known about the fine regulation of some of these intracellular interactions and how they are perturbed in diseases. To start filling this gap by identifying uncharacterized intracellular networks preferentially associated with β-DG, HEK-293 cells were transiently transfected with a plasmid carrying the β-DG subunit with GFP fused at its C-terminus. With this strategy, we aimed at forcing β-DG to occupy multiple intracellular locations instead of sitting tightly at its canonical plasma membrane milieu, where it is commonly found in association with α-DG. Immunoprecipitation by anti-GFP antibodies followed by shotgun proteomic analysis led to the identification of an interactome formed by 313 exclusive protein matches for β-DG binding. A series of already known β-DG interactors have been found, including ezrin and emerin, whilst significant new matches, which include potential novel β-DG interactors and their related networks, were identified in diverse subcellular compartments, such as cytoskeleton, endoplasmic reticulum/Golgi, mitochondria, nuclear membrane and the nucleus itself. Of particular interest amongst the novel identified matches, Lamina-Associated Polypeptide-1B (LAP1B), an inner nuclear membrane protein, whose mutations are known to cause nuclear envelopathies characterized by muscular dystrophy, was found to interact with β-DG in HEK-293 cells. This evidence was confirmed by immunoprecipitation, Western blotting and immunofluorescence experiments. We also found by immunofluorescence experiments that LAP1B looses its nuclear envelope localization in C2C12 DG-knock-out cells, suggesting that LAP1B requires β-DG for a proper nuclear localization. These results expand the role of β-DG as a nuclear scaffolding protein and provide novel evidence of a possible link between dystroglycanopathies and nuclear envelopathies displaying with muscular dystrophy.
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Affiliation(s)
- Francesca Sciandra
- Istituto di Scienze e Tecnologie Chimiche "Giulio Natta"- SCITEC (CNR), Largo F. Vito, 00168, Roma, Italy
| | - Claudia Desiderio
- Istituto di Scienze e Tecnologie Chimiche "Giulio Natta"- SCITEC (CNR), Largo F. Vito, 00168, Roma, Italy
| | - Federica Vincenzoni
- Dipartimento di Scienze biotecnologiche di base, cliniche intensivologiche e perioperatorie, Sezione di Biochimica e Biochimica Clinica, Università Cattolica del Sacro Cuore, Largo F. Vito 1, 00168, Roma, Italy; Fondazione Policlinico Universitario A. Gemelli IRCCS, Roma, Italy
| | - Simona Viscuso
- Dipartimento di Scienze biotecnologiche di base, cliniche intensivologiche e perioperatorie, Sezione di Biochimica e Biochimica Clinica, Università Cattolica del Sacro Cuore, Largo F. Vito 1, 00168, Roma, Italy
| | - Manuela Bozzi
- Istituto di Scienze e Tecnologie Chimiche "Giulio Natta"- SCITEC (CNR), Largo F. Vito, 00168, Roma, Italy; Dipartimento di Scienze biotecnologiche di base, cliniche intensivologiche e perioperatorie, Sezione di Biochimica e Biochimica Clinica, Università Cattolica del Sacro Cuore, Largo F. Vito 1, 00168, Roma, Italy
| | - Wolfgang Hübner
- Biomolecular Photonics, University of Bielefeld, 33615, Bielefeld, Germany
| | | | - Bulmaro Cisneros
- Departamento de Genética y Biología Molecular, CINVESTAV Zacatenco IPN, Ciudad de México, 07360, Mexico
| | - Andrea Brancaccio
- Istituto di Scienze e Tecnologie Chimiche "Giulio Natta"- SCITEC (CNR), Largo F. Vito, 00168, Roma, Italy; School of Biochemistry, University of Bristol, BS8 1TD, UK.
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5
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Needs HI, Glover E, Pereira GC, Witt A, Hübner W, Dodding MP, Henley JM, Collinson I. Rescue of mitochondrial import failure by intercellular organellar transfer. Nat Commun 2024; 15:988. [PMID: 38307874 PMCID: PMC10837123 DOI: 10.1038/s41467-024-45283-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2023] [Accepted: 01/19/2024] [Indexed: 02/04/2024] Open
Abstract
Mitochondria are the powerhouses of eukaryotic cells, composed mostly of nuclear-encoded proteins imported from the cytosol. Thus, problems with the import machinery will disrupt their regenerative capacity and the cell's energy supplies - particularly troublesome for energy-demanding cells of nervous tissue and muscle. Unsurprisingly then, import breakdown is implicated in disease. Here, we explore the consequences of import failure in mammalian cells; wherein, blocking the import machinery impacts mitochondrial ultra-structure and dynamics, but, surprisingly, does not affect import. Our data are consistent with a response involving intercellular mitochondrial transport via tunnelling nanotubes to import healthy mitochondria and jettison those with blocked import sites. These observations support the existence of a widespread mechanism for the rescue of mitochondrial dysfunction.
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Affiliation(s)
- Hope I Needs
- School of Biochemistry, University of Bristol, Bristol, BS8 1TD, UK
| | - Emily Glover
- School of Biochemistry, University of Bristol, Bristol, BS8 1TD, UK
| | - Gonçalo C Pereira
- School of Biochemistry, University of Bristol, Bristol, BS8 1TD, UK
- Nanna Therapeutics, Merrifield Centre, Rosemary Lane, Cambridge, CB1 3LQ, UK
| | - Alina Witt
- Fakultät für Physik, Universität Bielefeld, Bielefeld, Postfach 100131 D-33501, Germany
| | - Wolfgang Hübner
- Fakultät für Physik, Universität Bielefeld, Bielefeld, Postfach 100131 D-33501, Germany
| | - Mark P Dodding
- School of Biochemistry, University of Bristol, Bristol, BS8 1TD, UK
| | - Jeremy M Henley
- School of Biochemistry, University of Bristol, Bristol, BS8 1TD, UK.
| | - Ian Collinson
- School of Biochemistry, University of Bristol, Bristol, BS8 1TD, UK.
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6
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Shah ZH, Müller M, Hübner W, Wang TC, Telman D, Huser T, Schenck W. Evaluation of Swin Transformer and knowledge transfer for denoising of super-resolution structured illumination microscopy data. Gigascience 2024; 13:giad109. [PMID: 38217407 PMCID: PMC10787368 DOI: 10.1093/gigascience/giad109] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2023] [Revised: 07/13/2023] [Accepted: 12/05/2023] [Indexed: 01/15/2024] Open
Abstract
BACKGROUND Convolutional neural network (CNN)-based methods have shown excellent performance in denoising and reconstruction of super-resolved structured illumination microscopy (SR-SIM) data. Therefore, CNN-based architectures have been the focus of existing studies. However, Swin Transformer, an alternative and recently proposed deep learning-based image restoration architecture, has not been fully investigated for denoising SR-SIM images. Furthermore, it has not been fully explored how well transfer learning strategies work for denoising SR-SIM images with different noise characteristics and recorded cell structures for these different types of deep learning-based methods. Currently, the scarcity of publicly available SR-SIM datasets limits the exploration of the performance and generalization capabilities of deep learning methods. RESULTS In this work, we present SwinT-fairSIM, a novel method based on the Swin Transformer for restoring SR-SIM images with a low signal-to-noise ratio. The experimental results show that SwinT-fairSIM outperforms previous CNN-based denoising methods. Furthermore, as a second contribution, two types of transfer learning-namely, direct transfer and fine-tuning-were benchmarked in combination with SwinT-fairSIM and CNN-based methods for denoising SR-SIM data. Direct transfer did not prove to be a viable strategy, but fine-tuning produced results comparable to conventional training from scratch while saving computational time and potentially reducing the amount of training data required. As a third contribution, we publish four datasets of raw SIM images and already reconstructed SR-SIM images. These datasets cover two different types of cell structures, tubulin filaments and vesicle structures. Different noise levels are available for the tubulin filaments. CONCLUSION The SwinT-fairSIM method is well suited for denoising SR-SIM images. By fine-tuning, already trained models can be easily adapted to different noise characteristics and cell structures. Furthermore, the provided datasets are structured in a way that the research community can readily use them for research on denoising, super-resolution, and transfer learning strategies.
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Affiliation(s)
- Zafran Hussain Shah
- Faculty of Engineering and Mathematics, Bielefeld University of Applied Sciences and Arts, 33619 Bielefeld, Germany
| | - Marcel Müller
- Faculty of Physics, Bielefeld University, 33615 Bielefeld, Germany
| | - Wolfgang Hübner
- Faculty of Physics, Bielefeld University, 33615 Bielefeld, Germany
| | - Tung-Cheng Wang
- Faculty of Physics, Bielefeld University, 33615 Bielefeld, Germany
- Leica Microsystems CMS GmbH, 68165 Mannheim, Germany
| | - Daniel Telman
- Faculty of Engineering and Mathematics, Bielefeld University of Applied Sciences and Arts, 33619 Bielefeld, Germany
| | - Thomas Huser
- Faculty of Physics, Bielefeld University, 33615 Bielefeld, Germany
| | - Wolfram Schenck
- Faculty of Engineering and Mathematics, Bielefeld University of Applied Sciences and Arts, 33619 Bielefeld, Germany
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Barhoumi M, Liu J, Lefkidis G, Hübner W. Laser-induced ultrafast spin-transfer processes in non-linear zigzag carbon chain systems. Phys Chem Chem Phys 2023; 25:24563-24580. [PMID: 37661835 DOI: 10.1039/d3cp02483k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/05/2023]
Abstract
We combine the high-level quantum chemistry theory CCSD and EOM-CCSD together with local and global Λ processes to investigate the details of the laser-induced ultrafast spin manipulation scenarios in non-linear zigzag carbon chain systems Ni2@C32H32 and Ni2@C36H36. The spin density distribution, which is calculated on each many-body state using a Mulliken population analysis, fulfills the requirements to accomplish the spin dynamics processes. Various spin-flip and spin-transfer scenarios are accomplished. All the spin-dynamics processes can be achieved within subpicosecond times. Under the influence of a magnetic field, we find that the spin-transfer scenarios are preserved, while the local spin-flip scenario on a Ni atom can be significantly inhibited depending on the strength of the magnetic field. The impact of the propagation direction of the laser pulse on the spin dynamics processes by varying their polar and azimuthal angles in spherical coordinates is investigated. Additionally, we find that double laser pulses successfully induce the spin-transfer processes. Our outcomes underline the significant potential of carbon chain systems as building blocks for developing future all-optical integrated logic processing units.
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Affiliation(s)
- Mohamed Barhoumi
- Department of Physics, Rheinland-Pfälzische Technische Universität Kaiserslautern (RPTU) Kaiserslautern-Landau, P.O. Box 3049, 67653 Kaiserslautern, Germany.
| | - Jing Liu
- Institute of Theoretical Chemistry, Ulm University, 89081 Ulm, Germany
| | - Georgios Lefkidis
- Department of Physics, Rheinland-Pfälzische Technische Universität Kaiserslautern (RPTU) Kaiserslautern-Landau, P.O. Box 3049, 67653 Kaiserslautern, Germany.
| | - Wolfgang Hübner
- Department of Physics, Rheinland-Pfälzische Technische Universität Kaiserslautern (RPTU) Kaiserslautern-Landau, P.O. Box 3049, 67653 Kaiserslautern, Germany.
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Zhang Y, Xu S, Liu J, Jin W, Lefkidis G, Hübner W, Li C. Optically Driven Both Classical and Quantum Unary, Binary, and Ternary Logic Gates on Co-Decorated Graphene Nanoflakes. J Phys Chem Lett 2023; 14:8107-8113. [PMID: 37657090 DOI: 10.1021/acs.jpclett.3c01917] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/03/2023]
Abstract
Nanospintronics holds great potential for providing high-speed, low-power, and high-density logic and memory elements in future computational devices. Here, using ab initio many-body theory, we suggest a nanoscale framework for building quantum computation elements, based on individual magnetic atoms deposited on graphene nanoflakes. We show the great possibilities of this proposal by exemplarily presenting four quantum gates, namely, the unary Pauli-X, Pauli-Y, Pauli-Z, and Hadamard gates, as well as the universal classical ternary Toffoli gate, which preserves information entropy and is therefore fully reversible and minimally energy consuming. All our gates operate within the subpicosecond time scale and reach fidelities well above 90%. We demonstrate the ability to control the spin direction and localization, as well as to create superposition states and to control the quantum phase of states, which are indispensable ingredients of quantum computers. Additionally, being optically driven, their predicted operating speed by far beats that of modern quantum computers.
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Affiliation(s)
- Yiming Zhang
- School of Science, Xi'an University of Architecture and Technology, Xi'an 710055, China
- School of Mechanics, Civil Engineering and Architecture, Northwestern Polytechnical University, Xi'an 710072, China
| | - Shuai Xu
- School of Mechanics, Civil Engineering and Architecture, Northwestern Polytechnical University, Xi'an 710072, China
- Research and Development Institute of Northwestern Polytechnical University in Shenzhen, Shenzhen 518057, China
| | - Jing Liu
- Institute of Theoretical Chemistry, Ulm University, 89081 Ulm, Germany
| | - Wei Jin
- School of Physics and Information Technology, Shaanxi Normal University, Xi'an 710119, China
| | - Georgios Lefkidis
- School of Mechanics, Civil Engineering and Architecture, Northwestern Polytechnical University, Xi'an 710072, China
- Department of Physics, RPTU Kaiserslautern-Landau, P.O. Box 3049, Kaiserslautern 67663, Germany
| | - Wolfgang Hübner
- Department of Physics, RPTU Kaiserslautern-Landau, P.O. Box 3049, Kaiserslautern 67663, Germany
| | - Chun Li
- School of Mechanics, Civil Engineering and Architecture, Northwestern Polytechnical University, Xi'an 710072, China
- Research and Development Institute of Northwestern Polytechnical University in Shenzhen, Shenzhen 518057, China
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9
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Barhoumi M, Liu J, Lefkidis G, Hübner W. Ultrafast control of laser-induced spin-dynamics scenarios on two-dimensional Ni3@C63H54 magnetic system. J Chem Phys 2023; 159:084304. [PMID: 37638625 DOI: 10.1063/5.0158160] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2023] [Accepted: 08/07/2023] [Indexed: 08/29/2023] Open
Abstract
The concept of building logically functional networks employing spintronics or magnetic heterostructures is becoming more and more popular today. Incorporating logical segments into a circuit needs physical bonds between the magnetic molecules or clusters involved. In this framework, we systematically study ultrafast laser-induced spin-manipulation scenarios on a closed system of three carbon chains to which three Ni atoms are attached. After the inclusion of spin-orbit coupling and an external magnetic field, different ultrafast spin dynamics scenarios involving spin-flip and long-distance spin-transfer processes are achieved by various appropriately well-tailored time-resolved laser pulses within subpicosecond timescales. We additionally study the various effects of an external magnetic field on spin-flip and spin-transfer processes. Moreover, we obtain spin-dynamics processes induced by a double laser pulse, rather than a single one. We suggest enhancing the spatial addressability of spin-flip and spin-transfer processes. The findings presented in this article will improve our knowledge of the magnetic properties of carbon-based magnetic molecular structures. They also support the relevant experimental realization of spin dynamics and their potential applications in future molecular spintronics devices.
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Affiliation(s)
- Mohamed Barhoumi
- Department of Physics, Rheinland-Pfälzische Technische Universität Kaiserslautern (RPTU) Kaiserslautern-Landau, P.O. Box 3049, 67653 Kaiserslautern, Germany
| | - Jing Liu
- Institute of Theoretical Chemistry, Ulm University, 89081 Ulm, Germany
| | - Georgios Lefkidis
- Department of Physics, Rheinland-Pfälzische Technische Universität Kaiserslautern (RPTU) Kaiserslautern-Landau, P.O. Box 3049, 67653 Kaiserslautern, Germany
| | - Wolfgang Hübner
- Department of Physics, Rheinland-Pfälzische Technische Universität Kaiserslautern (RPTU) Kaiserslautern-Landau, P.O. Box 3049, 67653 Kaiserslautern, Germany
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10
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Golm SK, Hübner W, Müller KM. Fluorescence Microscopy in Adeno-Associated Virus Research. Viruses 2023; 15:v15051174. [PMID: 37243260 DOI: 10.3390/v15051174] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2023] [Revised: 05/02/2023] [Accepted: 05/07/2023] [Indexed: 05/28/2023] Open
Abstract
Research on adeno-associated virus (AAV) and its recombinant vectors as well as on fluorescence microscopy imaging is rapidly progressing driven by clinical applications and new technologies, respectively. The topics converge, since high and super-resolution microscopes facilitate the study of spatial and temporal aspects of cellular virus biology. Labeling methods also evolve and diversify. We review these interdisciplinary developments and provide information on the technologies used and the biological knowledge gained. The emphasis lies on the visualization of AAV proteins by chemical fluorophores, protein fusions and antibodies as well as on methods for the detection of adeno-associated viral DNA. We add a short overview of fluorescent microscope techniques and their advantages and challenges in detecting AAV.
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Affiliation(s)
- Susanne K Golm
- Cellular and Molecular Biotechnology, Faculty of Technology, Bielefeld University, 33615 Bielefeld, Germany
| | - Wolfgang Hübner
- Biomolecular Photonics, Faculty of Physics, Bielefeld University, 33615 Bielefeld, Germany
| | - Kristian M Müller
- Cellular and Molecular Biotechnology, Faculty of Technology, Bielefeld University, 33615 Bielefeld, Germany
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11
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Sandmeyer A, Wang L, Hübner W, Müller M, Chen BK, Huser T. Cost-effective high-speed, three-dimensional live-cell imaging of HIV-1 transfer at the T cell virological synapse. iScience 2022; 25:105468. [PMID: 36388970 PMCID: PMC9663902 DOI: 10.1016/j.isci.2022.105468] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2021] [Revised: 05/16/2022] [Accepted: 10/26/2022] [Indexed: 11/12/2022] Open
Abstract
The availability of cost-effective, highly portable, and easy to use high-resolution live-cell imaging systems could present a significant technological break-through in challenging environments, such as high-level biosafety laboratories or sites where new viral outbreaks are suspected. We describe and demonstrate a cost-effective high-speed fluorescence microscope enabling the live tracking of virus particles across virological synapses that form between infected and uninfected T cells. The dynamics of HIV-1 proteins studied at the cellular level and the formation of virological synapses in living T cells reveals mechanisms by which cell-cell interactions facilitate infection between immune cells. Dual-color 3D fluorescence deconvolution microscopy of HIV-1 particles at frames rates of 100 frames per second allows us to follow the transfer of HIV-1 particles across the T cell virological synapse between living T cells. We also confirm the successful transfer of virus by imaging T cell samples fixed at specific time points during cell-cell virus transfer by super-resolution structured illumination microscopy.
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Affiliation(s)
- Alice Sandmeyer
- Biomolecular Photonics, Faculty of Physics, Bielefeld University, 33615 Bielefeld, Germany
| | - Lili Wang
- Division of Infectious Diseases, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York City, NY 10029, USA
| | - Wolfgang Hübner
- Biomolecular Photonics, Faculty of Physics, Bielefeld University, 33615 Bielefeld, Germany
| | - Marcel Müller
- Biomolecular Photonics, Faculty of Physics, Bielefeld University, 33615 Bielefeld, Germany
| | - Benjamin K. Chen
- Division of Infectious Diseases, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York City, NY 10029, USA
| | - Thomas Huser
- Biomolecular Photonics, Faculty of Physics, Bielefeld University, 33615 Bielefeld, Germany
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12
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Sold S, Mummaneni BC, Michenfelder NC, Peng Y, Powell AK, Unterreiner AN, Lefkidis G, Hübner W. Experimental and Theoretical Study of the Ultrafast Dynamics of a Ni 2 Dy 2 -Compound in DMF After UV/Vis Photoexcitation. Chemistry 2022; 11:e202200086. [PMID: 35499181 DOI: 10.1002/open.202200086] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Invited for this month's cover picture are the groups of Wolfgang Hübner (TU Kaiserslautern, Germany), Annie Powell (Karlsruhe Institut of Technology, Germany), and Andreas-Neil Unterreiner (Karlsruhe Institut of Technology, Germany). The cover picture shows the Dy2 Ni2 -molecular magnet being excited with a UV/Vis laser pulse, together with its time-resolved spectrum after the pulse. The comparison of the theoretical and the experimental spectra together with both the observed and the calculated relaxation times reveal, among others, three key points: the intermediate states participating in the laser-induced dynamics, the partial metal-to-oxygen charge-transfer excitations, and the order of magnitude of the coupling of the molecular magnet to the thermal bath of the environment. Read the full text of their Full Paper at 10.1002/open.202100153.
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Affiliation(s)
- Stefan Sold
- Department of Physics and Research Center OPTIMAS, Technische Universität Kaiserslautern, P.O. Box 3049, 67653, Kaiserslautern, Germany
| | - Bharadwaj C Mummaneni
- Department of Physics and Research Center OPTIMAS, Technische Universität Kaiserslautern, P.O. Box 3049, 67653, Kaiserslautern, Germany
| | - Nadine C Michenfelder
- Institute of Physical Chemistry, Karlsruhe Institute of Technology, Fritz-Haber-Weg 2, 76131, Karlsruhe, Germany
| | - Yan Peng
- Institute of Inorganic Chemistry, Karlsruhe Institute of Technology, Engesserstrasse 15, 76131, Karlsruhe, Germany.,Institute of Nanotechnology, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein-Leopoldshafen, Germany
| | - Annie K Powell
- Institute of Inorganic Chemistry, Karlsruhe Institute of Technology, Engesserstrasse 15, 76131, Karlsruhe, Germany.,Institute of Nanotechnology, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein-Leopoldshafen, Germany
| | - Andreas-Neil Unterreiner
- Institute of Physical Chemistry, Karlsruhe Institute of Technology, Fritz-Haber-Weg 2, 76131, Karlsruhe, Germany
| | - Georgios Lefkidis
- Department of Physics and Research Center OPTIMAS, Technische Universität Kaiserslautern, P.O. Box 3049, 67653, Kaiserslautern, Germany.,School of Mechanics, Civil Engineering and Architecture, Northwestern Polytechnical University, Xi'an, 710072, China
| | - Wolfgang Hübner
- Department of Physics and Research Center OPTIMAS, Technische Universität Kaiserslautern, P.O. Box 3049, 67653, Kaiserslautern, Germany
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13
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Sold S, Mummaneni BC, Michenfelder NC, Peng Y, Powell AK, Unterreiner A, Lefkidis G, Hübner W. Front Cover: Experimental and Theoretical Study of the Ultrafast Dynamics of a Ni
2
Dy
2
‐Compound in DMF After UV/Vis Photoexcitation (ChemistryOpen 5/2022). Chemistry 2022. [DOI: 10.1002/open.202200087] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- S. Sold
- Department of Physics and Research Center OPTIMAS Technische Universität Kaiserslautern P.O. Box 3049 67653 Kaiserslautern Germany
| | - B. C. Mummaneni
- Department of Physics and Research Center OPTIMAS Technische Universität Kaiserslautern P.O. Box 3049 67653 Kaiserslautern Germany
| | - N. C. Michenfelder
- Institute of Physical Chemistry Karlsruhe Institute of Technology Fritz-Haber-Weg 2 76131 Karlsruhe Germany
| | - Y. Peng
- Institute of Inorganic Chemistry Karlsruhe Institute of Technology Engesserstrasse 15 76131 Karlsruhe Germany
- Institute of Nanotechnology Karlsruhe Institute of Technology Hermann-von-Helmholtz-Platz 1 76344 Eggenstein-Leopoldshafen Germany
| | - A. K. Powell
- Institute of Inorganic Chemistry Karlsruhe Institute of Technology Engesserstrasse 15 76131 Karlsruhe Germany
- Institute of Nanotechnology Karlsruhe Institute of Technology Hermann-von-Helmholtz-Platz 1 76344 Eggenstein-Leopoldshafen Germany
| | - A.‐N. Unterreiner
- Institute of Physical Chemistry Karlsruhe Institute of Technology Fritz-Haber-Weg 2 76131 Karlsruhe Germany
| | - G. Lefkidis
- Department of Physics and Research Center OPTIMAS Technische Universität Kaiserslautern P.O. Box 3049 67653 Kaiserslautern Germany
- School of Mechanics Civil Engineering and Architecture Northwestern Polytechnical University Xi'an 710072 China
| | - W. Hübner
- Department of Physics and Research Center OPTIMAS Technische Universität Kaiserslautern P.O. Box 3049 67653 Kaiserslautern Germany
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14
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Mummaneni BC, Liu J, Lefkidis G, Hübner W. Laser-Controlled Implementation of Controlled-NOT, Hadamard, SWAP, and Pauli Gates as Well as Generation of Bell States in a 3d-4f Molecular Magnet. J Phys Chem Lett 2022; 13:2479-2485. [PMID: 35266722 DOI: 10.1021/acs.jpclett.2c00172] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Using high-level ab initio many-body theory, we theoretically propose that the Dy and the Ni atoms in the [Dy2Ni2(L)4(NO3)2(DMF)2] real molecular magnet as well as in its core, that is, the [Dy2Ni2O6] system, act as two-level qubit systems. Despite their spatial proximity we can individually control each qubit in this highly correlated real magnetic system through specially designed laser-pulse combinations. This allows us to prepare any desired two-qubit state and to build several classical and quantum logic gates, such as the two-qubit (binary) CNOT gate with three distinct laser pulses. Other quantum logic gates include the single-qubit (unary) quantum X, Y, and Z Pauli gates; the Hadamard gate (which necessitates the coherent quantum superposition of two many-body electronic states); and the SWAP gate (which plays an important role in Shor's algorithm for integer factorization). Finally, by sequentially using the achieved CNOT and Hadamard gates we are able to obtain the maximally entangled Bell states, for example, (12)(|00⟩ + |11⟩).
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Affiliation(s)
| | - Jing Liu
- Department of Physics, Technische Universität Kaiserslautern, PO Box 3049, 67653 Kaiserslautern, Germany
| | - Georgios Lefkidis
- Department of Physics, Technische Universität Kaiserslautern, PO Box 3049, 67653 Kaiserslautern, Germany
- School of Mechanics, Civil Engineering and Architecture, Northwestern Polytechnical University, Xi'an 710072, China
| | - Wolfgang Hübner
- Department of Physics, Technische Universität Kaiserslautern, PO Box 3049, 67653 Kaiserslautern, Germany
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15
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Liang X, Yang J, Zhang Y, Liu J, Li C, Lefkidis G, Hübner W, Jin W. Theoretical study of laser-induced ultrafast spin dynamics in trigonal monopyramidal iron and nickel complexes. Phys Chem Chem Phys 2022; 24:24881-24891. [DOI: 10.1039/d2cp03390a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We present a first-principles study of the geometries, electronic structures, and laser-induced ultrafast spin dynamics in the four trigonal monopyramidal complexes [tpa$^{\text{t-Bu}}$Fe]$^-$, [tcma$^{\text{t-Bu}}$Fe]$^-$, [tpa$^{\text{t-Bu}}$Ni]$^-$, and [tcma$^{\text{t-Bu}}$Ni]$^-$ [tpa: tris-(pyrrolylmethyl)amine; tcma: tris(carbamoyl-methyl)amine;...
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16
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Wang L, Sandmeyer A, Hübner W, Li H, Huser T, Chen BK. A Replication-Competent HIV Clone Carrying GFP-Env Reveals Rapid Env Recycling at the HIV-1 T Cell Virological Synapse. Viruses 2021; 14:v14010038. [PMID: 35062242 PMCID: PMC8781834 DOI: 10.3390/v14010038] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2021] [Revised: 10/08/2021] [Accepted: 12/17/2021] [Indexed: 12/24/2022] Open
Abstract
HIV-1 infection is enhanced by cell-cell adhesions between infected and uninfected T cells called virological synapses (VS). VS are initiated by the interactions of cell-surface HIV-1 envelope glycoprotein (Env) and CD4 on target cells and act as sites of viral assembly and viral transfer between cells. To study the process that recruits and retains HIV-1 Env at the VS, a replication-competent HIV-1 clone carrying an Env-sfGFP fusion protein was designed to enable live tracking of Env within infected cells. Combined use of surface pulse-labeling of Env and fluorescence recovery after photobleaching (FRAP) studies, enabled the visualization of the targeted accumulation and sustained recycling of Env between endocytic compartments (EC) and the VS. We observed dynamic exchange of Env at the VS, while the viral structural protein, Gag, was largely immobile at the VS. The disparate exchange rates of Gag and Env at the synapse support that the trafficking and/or retention of a majority of Env towards the VS is not maintained by entrapment by a Gag lattice or immobilization by binding to CD4 on the target cell. A FRAP study of an Env endocytosis mutant showed that recycling is not required for accumulation at the VS, but is required for the rapid exchange of Env at the VS. We conclude that the mechanism of Env accumulation at the VS and incorporation into nascent particles involves continuous internalization and targeted secretion rather than irreversible interactions with the budding virus, but that this recycling is largely dispensable for VS formation and viral transfer across the VS.
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Affiliation(s)
- Lili Wang
- Department of Medicine, Division of Infectious Disease, Immunology Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA; (L.W.); (H.L.)
| | - Alice Sandmeyer
- Biomolecular Photonics, Department of Physics, University of Bielefeld, 33615 Bielefeld, Germany; (A.S.); (W.H.); (T.H.)
| | - Wolfgang Hübner
- Biomolecular Photonics, Department of Physics, University of Bielefeld, 33615 Bielefeld, Germany; (A.S.); (W.H.); (T.H.)
| | - Hongru Li
- Department of Medicine, Division of Infectious Disease, Immunology Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA; (L.W.); (H.L.)
| | - Thomas Huser
- Biomolecular Photonics, Department of Physics, University of Bielefeld, 33615 Bielefeld, Germany; (A.S.); (W.H.); (T.H.)
| | - Benjamin K. Chen
- Department of Medicine, Division of Infectious Disease, Immunology Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA; (L.W.); (H.L.)
- Correspondence:
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17
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Sold S, Mummaneni BC, Michenfelder NC, Peng Y, Powell AK, Unterreiner AN, Lefkidis G, Hübner W. Experimental and Theoretical Study of the Ultrafast Dynamics of a Ni 2 Dy 2 -Compound in DMF After UV/Vis Photoexcitation. ChemistryOpen 2021; 11:e202100153. [PMID: 34931474 PMCID: PMC9059312 DOI: 10.1002/open.202100153] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Revised: 11/04/2021] [Indexed: 01/30/2023] Open
Abstract
We present a combined experimental and theoretical study of the ultrafast transient absorption spectroscopy results of a {Ni2Dy2}‐compound in DMF, which can be considered as a prototypic molecule for single molecule magnets. We apply state‐of‐the‐art ab initio quantum chemistry to quantitatively describe the optical properties of an inorganic complex system comprising ten atoms to form the chromophoric unit, which is further stabilized by surrounding ligands. Two different basis sets are used for the calculations to specifically identify two dominant peaks in the ground state. Furthermore, we theoretically propagate the compound's correlated many‐body wavefunction under the influence of a laser pulse as well as relaxation processes and compare against the time‐resolved absorption spectra. The experimental data can be described with a time constant of several hundreds of femtoseconds attributed to vibrational relaxation and trapping into states localized within the band gap. A second time constant is ascribed to the excited state while trap states show lifetimes on a longer timescale. The theoretical propagation is performed with the density‐matrix formalism and the Lindblad superoperator, which couples the system to a thermal bath, allowing us to extract relaxation times from first principles.
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Affiliation(s)
- S Sold
- Department of Physics and Research Center OPTIMAS, Technische Universität Kaiserslautern, P.O. Box 3049, 67653, Kaiserslautern, Germany
| | - B C Mummaneni
- Department of Physics and Research Center OPTIMAS, Technische Universität Kaiserslautern, P.O. Box 3049, 67653, Kaiserslautern, Germany
| | - N C Michenfelder
- Institute of Physical Chemistry, Karlsruhe Institute of Technology, Fritz-Haber-Weg 2, 76131, Karlsruhe, Germany
| | - Y Peng
- Institute of Inorganic Chemistry, Karlsruhe Institute of Technology, Engesserstrasse 15, 76131, Karlsruhe, Germany.,Institute of Nanotechnology, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein-Leopoldshafen, Germany
| | - A K Powell
- Institute of Inorganic Chemistry, Karlsruhe Institute of Technology, Engesserstrasse 15, 76131, Karlsruhe, Germany.,Institute of Nanotechnology, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein-Leopoldshafen, Germany
| | - A-N Unterreiner
- Institute of Physical Chemistry, Karlsruhe Institute of Technology, Fritz-Haber-Weg 2, 76131, Karlsruhe, Germany
| | - G Lefkidis
- Department of Physics and Research Center OPTIMAS, Technische Universität Kaiserslautern, P.O. Box 3049, 67653, Kaiserslautern, Germany.,School of Mechanics, Civil Engineering and Architecture, Northwestern Polytechnical University, Xi'an, 710072, China
| | - W Hübner
- Department of Physics and Research Center OPTIMAS, Technische Universität Kaiserslautern, P.O. Box 3049, 67653, Kaiserslautern, Germany
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18
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Xu S, Zhang Y, Huang R, Liu J, Jin W, Lefkidis G, Hübner W, Li C. Strain manipulation of the local spin flip on Ni@B 80 endohedral fullerene. Phys Chem Chem Phys 2021; 23:25712-25719. [PMID: 34755737 DOI: 10.1039/d1cp03206b] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Using first principles, we theoretically investigate the strain manipulation of the ultrafast spin-flip processes on the Ni@B80 endohedral fullerene by using highly correlated quantum chemical calculations. It is shown that the ultrafast local spin flip on Ni@B80 can be achieved via Λ processes with high fidelities in both the equilibrium and distorted structures. Moreover, the applied strain on Ni@B80 can significantly lead to the redistribution of spin density, and therefore dominate the spin-flip processes. It is interesting that the strain effects on the spin-flip processes of Ni@B80 are not identical. Specifically, when a strain is applied along the direction across the Ni atom, the influence is exactly opposite to the case when the strain direction goes without crossing the Ni atom. This orientation-dependent strain effect is also demonstrated by analyzing the modulated energy gaps between the singly occupied molecular orbital (SOMO) and the lowest unoccupied molecular orbital (LUMO) of the system. The present results shed some light on the mechanical control of the magneto-optic dynamics behavior of the endohedral fullerenes, and further provide the idea that strain engineering and spin engineering can be combined for the design of nanoscale magnetic storage units and spintronic devices.
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Affiliation(s)
- Shuai Xu
- School of Mechanics, Civil Engineering and Architecture, Northwestern Polytechnical University, Xi'an 710072, China.
| | - Yiming Zhang
- School of Mechanics, Civil Engineering and Architecture, Northwestern Polytechnical University, Xi'an 710072, China.
| | - Rui Huang
- Envision Group, SOHO Zhongshan Plaza, Shanghai 200051, China
| | - Jing Liu
- Department of Physics and Research Center OPTIMAS, Technische Universität Kaiserslautern, PO Box 3049, 67653 Kaiserslautern, Germany
| | - Wei Jin
- School of Physics and Information Technology, Shaanxi Normal University, Xi'an 710119, China
| | - Georgios Lefkidis
- School of Mechanics, Civil Engineering and Architecture, Northwestern Polytechnical University, Xi'an 710072, China. .,Department of Physics and Research Center OPTIMAS, Technische Universität Kaiserslautern, PO Box 3049, 67653 Kaiserslautern, Germany
| | - Wolfgang Hübner
- Department of Physics and Research Center OPTIMAS, Technische Universität Kaiserslautern, PO Box 3049, 67653 Kaiserslautern, Germany
| | - Chun Li
- School of Mechanics, Civil Engineering and Architecture, Northwestern Polytechnical University, Xi'an 710072, China.
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19
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Lachetta M, Wiebusch G, Hübner W, Schulte Am Esch J, Huser T, Müller M. Dual color DMD-SIM by temperature-controlled laser wavelength matching. Opt Express 2021; 29:39696-39708. [PMID: 34809327 DOI: 10.1364/oe.437822] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2021] [Accepted: 10/11/2021] [Indexed: 06/13/2023]
Abstract
Structured illumination microscopy (SIM) is a fast and gentle super-resolution fluorescence imaging technique, featuring live-cell compatible excitation light levels and high imaging speeds. To achieve SIM, spatial modulation of the fluorescence excitation light is employed. This is typically achieved by interfering coherent laser beams in the sample plane, which are often created by spatial light modulators (SLMs). Digital micromirror devices (DMDs) are a form of SLMs with certain advantages, such as high speed, low cost and wide availability, which present certain hurdles in their implementation, mainly the blazed grating effect caused by the jagged surface structure of the tilted mirrors. Recent works have studied this effect through modelling, simulations and experiments, and laid out possible implementations of multi-color SIM imaging based on DMDs. Here, we present an implementation of a dual-color DMD based SIM microscope using temperature-controlled wavelength matching. By carefully controlling the output wavelength of a diode laser by temperature, we can tune two laser wavelengths in such a way that no opto-mechanical realignment of the SIM setup is necessary when switching between both wavelengths. This reduces system complexity and increases imaging speed. With measurements on nano-bead reference samples, as well as the actin skeleton and membrane of fixed U2OS cells, we demonstrate the capabilities of the setup.
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20
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Kong C, Bobe S, Pilger C, Lachetta M, Øie CI, Kirschnick N, Mönkemöller V, Hübner W, Förster C, Schüttpelz M, Kiefer F, Huser T, Schulte Am Esch J. Multiscale and Multimodal Optical Imaging of the Ultrastructure of Human Liver Biopsies. Front Physiol 2021; 12:637136. [PMID: 33679449 PMCID: PMC7925637 DOI: 10.3389/fphys.2021.637136] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2020] [Accepted: 01/27/2021] [Indexed: 12/30/2022] Open
Abstract
The liver as the largest organ in the human body is composed of a complex macroscopic and microscopic architecture that supports its indispensable function to maintain physiological homeostasis. Optical imaging of the human liver is particularly challenging because of the need to cover length scales across 7 orders of magnitude (from the centimeter scale to the nanometer scale) in order to fully assess the ultrastructure of the entire organ down to the subcellular scale and probe its physiological function. This task becomes even more challenging the deeper within the organ one hopes to image, because of the strong absorption and scattering of visible light by the liver. Here, we demonstrate how optical imaging methods utilizing highly specific fluorescent labels, as well as label-free optical methods can seamlessly cover this entire size range in excised, fixed human liver tissue and we exemplify this by reconstructing the biliary tree in three-dimensional space. Imaging of tissue beyond approximately 0.5 mm length requires optical clearing of the human liver. We present the successful use of optical projection tomography and light-sheet fluorescence microscopy to derive information about the liver architecture on the millimeter scale. The intermediate size range is covered using label-free structural and chemically sensitive methods, such as second harmonic generation and coherent anti-Stokes Raman scattering microscopy. Laser-scanning confocal microscopy extends the resolution to the nanoscale, allowing us to ultimately image individual liver sinusoidal endothelial cells and their fenestrations by super-resolution structured illumination microscopy. This allowed us to visualize the human hepatobiliary system in 3D down to the cellular level, which indicates that reticular biliary networks communicate with portal bile ducts via single or a few ductuli. Non-linear optical microscopy enabled us to identify fibrotic regions extending from the portal field to the parenchyma, along with microvesicular steatosis in liver biopsies from an older patient. Lastly, super-resolution microscopy allowed us to visualize and determine the size distribution of fenestrations in human liver sinusoidal endothelial cells for the first time under aqueous conditions. Thus, this proof-of-concept study allows us to demonstrate, how, in combination, these techniques open up a new chapter in liver biopsy analysis.
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Affiliation(s)
- Cihang Kong
- Department of Physics, Bielefeld University, Bielefeld, Germany
| | - Stefanie Bobe
- European Institute for Molecular Imaging, University of Münster, Münster, Germany
| | | | - Mario Lachetta
- Department of Physics, Bielefeld University, Bielefeld, Germany
| | - Cristina Ionica Øie
- Vascular Biology Research Group, Department of Medical Biology, University of Tromsø - The Arctic University of Norway, Tromsø, Norway
| | - Nils Kirschnick
- European Institute for Molecular Imaging, University of Münster, Münster, Germany
| | | | - Wolfgang Hübner
- Department of Physics, Bielefeld University, Bielefeld, Germany.,Forschungsverbund BioMedizin Bielefeld (FBMB), Bielefeld, Germany
| | | | - Mark Schüttpelz
- Department of Physics, Bielefeld University, Bielefeld, Germany
| | - Friedemann Kiefer
- European Institute for Molecular Imaging, University of Münster, Münster, Germany
| | - Thomas Huser
- Department of Physics, Bielefeld University, Bielefeld, Germany.,Forschungsverbund BioMedizin Bielefeld (FBMB), Bielefeld, Germany
| | - Jan Schulte Am Esch
- Forschungsverbund BioMedizin Bielefeld (FBMB), Bielefeld, Germany.,Department of General and Visceral Surgery, Evangelisches Klinikum Bethel gGmbH, University Hospital OWL of the University of Bielefeld, Bielefeld, Germany
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21
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Liu J, Li C, Jin W, Lefkidis G, Hübner W. Long-Distance Ultrafast Spin Transfer over a Zigzag Carbon Chain Structure. Phys Rev Lett 2021; 126:037402. [PMID: 33543976 DOI: 10.1103/physrevlett.126.037402] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2020] [Revised: 11/18/2020] [Accepted: 12/16/2020] [Indexed: 06/12/2023]
Abstract
Using high-level ab initio quantum theory we suggest an optically induced subpicosecond spin-transfer scenario over 4.428 nm, a distance which is directly comparable to the actual CMOS scale. The spin-density transfer takes place between two Ni atoms and over a 40-atom-long zigzag carbon chain. The suitable combination of the local symmetries of the participating carbon atoms and the global symmetry of the whole molecule gives rise to what we term the dynamical Goodenough-Kanamori rules, allowing the long-range coupling of the two Ni atoms. We also present local spin-flip scenarios, and compare spin flip and spin transfer with respect to their sensitivity against an external static magnetic gradient. Finally, we use two identical laser pulses, rather than a single one, which allows us to accurately control local (intrasite) vs global (intersite) processes, and we thus solve the problem of embedding individually addressable molecular nanologic elements in an integrated nanospintronic circuit. Our results underline the great potential of carbon chain systems as building and supporting blocks for designing future all-optical magnetic processing units.
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Affiliation(s)
- Jing Liu
- Department of Physics and Research Center OPTIMAS, Technische Universität Kaiserslautern, P.O. Box 3049, 67653 Kaiserslautern, Germany
| | - Chun Li
- School of Mechanics, Civil Engineering and Architecture, Northwestern Polytechnical University, Xi'an 710072, China
- Department of Mechanical Engineering, University of Manitoba, Winnipeg, Manitoba R3T 5V6, Canada
| | - Wei Jin
- School of Physics and Information Technology, Shaanxi Normal University, Xi'an 710119, China
| | - Georgios Lefkidis
- Department of Physics and Research Center OPTIMAS, Technische Universität Kaiserslautern, P.O. Box 3049, 67653 Kaiserslautern, Germany
- School of Mechanics, Civil Engineering and Architecture, Northwestern Polytechnical University, Xi'an 710072, China
| | - Wolfgang Hübner
- Department of Physics and Research Center OPTIMAS, Technische Universität Kaiserslautern, P.O. Box 3049, 67653 Kaiserslautern, Germany
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22
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Kretschmer A, Hüsch T, Kirschner-Hermanns R, Anding R, Rose A, Friedl A, Obaje A, Brehmer B, Naumann C, Queissert F, Pfitzenmaier J, Nyarangi-Dix J, Olianas R, Homberg R, Abdunnur R, Schweiger J, Grabbert M, Hofmann T, Wotzka C, Pottek T, Hübner W, Haferkamp A, Bauer R, Loertzer H. Retropubic versus transobturator Argus® adjustable male sling: Results from a multicenter study. EUR UROL SUPPL 2020. [DOI: 10.1016/s2666-1683(20)32869-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022] Open
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23
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Stephan T, Brüser C, Deckers M, Steyer AM, Balzarotti F, Barbot M, Behr TS, Heim G, Hübner W, Ilgen P, Lange F, Pacheu-Grau D, Pape JK, Stoldt S, Huser T, Hell SW, Möbius W, Rehling P, Riedel D, Jakobs S. MICOS assembly controls mitochondrial inner membrane remodeling and crista junction redistribution to mediate cristae formation. EMBO J 2020; 39:e104105. [PMID: 32567732 PMCID: PMC7361284 DOI: 10.15252/embj.2019104105] [Citation(s) in RCA: 94] [Impact Index Per Article: 23.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2019] [Revised: 05/08/2020] [Accepted: 05/13/2020] [Indexed: 12/26/2022] Open
Abstract
Mitochondrial function is critically dependent on the folding of the mitochondrial inner membrane into cristae; indeed, numerous human diseases are associated with aberrant crista morphologies. With the MICOS complex, OPA1 and the F1 Fo -ATP synthase, key players of cristae biogenesis have been identified, yet their interplay is poorly understood. Harnessing super-resolution light and 3D electron microscopy, we dissect the roles of these proteins in the formation of cristae in human mitochondria. We individually disrupted the genes of all seven MICOS subunits in human cells and re-expressed Mic10 or Mic60 in the respective knockout cell line. We demonstrate that assembly of the MICOS complex triggers remodeling of pre-existing unstructured cristae and de novo formation of crista junctions (CJs) on existing cristae. We show that the Mic60-subcomplex is sufficient for CJ formation, whereas the Mic10-subcomplex controls lamellar cristae biogenesis. OPA1 stabilizes tubular CJs and, along with the F1 Fo -ATP synthase, fine-tunes the positioning of the MICOS complex and CJs. We propose a new model of cristae formation, involving the coordinated remodeling of an unstructured crista precursor into multiple lamellar cristae.
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Affiliation(s)
- Till Stephan
- Department of NanoBiophotonics, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.,Clinic of Neurology, University Medical Center Göttingen, Göttingen, Germany
| | - Christian Brüser
- Department of NanoBiophotonics, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.,Clinic of Neurology, University Medical Center Göttingen, Göttingen, Germany
| | - Markus Deckers
- Department of Cellular Biochemistry, University Medical Center Göttingen, Göttingen, Germany
| | - Anna M Steyer
- Department of Neurogenetics, Electron Microscopy Core Unit, Max Planck Institute of Experimental Medicine, Göttingen, Germany
| | - Francisco Balzarotti
- Department of NanoBiophotonics, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany
| | - Mariam Barbot
- Department of NanoBiophotonics, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.,Clinic of Neurology, University Medical Center Göttingen, Göttingen, Germany
| | - Tiana S Behr
- Department of NanoBiophotonics, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.,Clinic of Neurology, University Medical Center Göttingen, Göttingen, Germany
| | - Gudrun Heim
- Laboratory of Electron Microscopy, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany
| | - Wolfgang Hübner
- Department of Physics, University Bielefeld, Bielefeld, Germany
| | - Peter Ilgen
- Department of NanoBiophotonics, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.,Clinic of Neurology, University Medical Center Göttingen, Göttingen, Germany
| | - Felix Lange
- Department of NanoBiophotonics, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.,Clinic of Neurology, University Medical Center Göttingen, Göttingen, Germany
| | - David Pacheu-Grau
- Department of Cellular Biochemistry, University Medical Center Göttingen, Göttingen, Germany
| | - Jasmin K Pape
- Department of NanoBiophotonics, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany
| | - Stefan Stoldt
- Department of NanoBiophotonics, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.,Clinic of Neurology, University Medical Center Göttingen, Göttingen, Germany
| | - Thomas Huser
- Department of Physics, University Bielefeld, Bielefeld, Germany
| | - Stefan W Hell
- Department of NanoBiophotonics, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.,Cluster of Excellence "Multiscale Bioimaging: from Molecular Machines to Networks of Excitable Cells" (MBExC), University of Goettingen, Goettingen, Germany
| | - Wiebke Möbius
- Department of Neurogenetics, Electron Microscopy Core Unit, Max Planck Institute of Experimental Medicine, Göttingen, Germany
| | - Peter Rehling
- Department of Cellular Biochemistry, University Medical Center Göttingen, Göttingen, Germany.,Cluster of Excellence "Multiscale Bioimaging: from Molecular Machines to Networks of Excitable Cells" (MBExC), University of Goettingen, Goettingen, Germany
| | - Dietmar Riedel
- Laboratory of Electron Microscopy, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany
| | - Stefan Jakobs
- Department of NanoBiophotonics, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.,Clinic of Neurology, University Medical Center Göttingen, Göttingen, Germany.,Cluster of Excellence "Multiscale Bioimaging: from Molecular Machines to Networks of Excitable Cells" (MBExC), University of Goettingen, Goettingen, Germany
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24
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Abstract
In this work, using ab initio many-body theory and inspired by an idea suggested by G. D. Mahan for an abstract N-dimensional chain composed of s-type atoms ( Phys. Rev. Lett. 2009, 102, 016801), we propose a functional topological spin-charge gearbox based on the real synthesized Co3Ni(EtOH) cluster driven with laser pulses. We analyze the implications arising from the use of a real molecule with d-character functional orbitals rather than an extended system and discuss the role of the point group symmetry of the system and the transferability of the electronic and spin density between different many-body states using specially designed laser pulses. We thus find that first-row transition-metal elements can host unpaired yet correlated d electrons and thus act as sites for spin information carriers, while designated laser pulses induce symmetry operations leading to a realizable spin-charge gearbox.
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Affiliation(s)
- G Lefkidis
- Department of Physics and Research Center OPTIMAS, Technische Universität Kaiserslautern, P.O. Box 3049, 67653 Kaiserslautern, Germany
- School of Mechanics, Civil Engineering and Architecture, Northwestern Polytechnical University, Xi'an 710072, China
| | - W Jin
- School of Physics and Information Technology, Shaanxi Normal University, Xi'an 710119, China
| | - J Liu
- Department of Physics and Research Center OPTIMAS, Technische Universität Kaiserslautern, P.O. Box 3049, 67653 Kaiserslautern, Germany
| | - D Dutta
- Department of Physics and Research Center OPTIMAS, Technische Universität Kaiserslautern, P.O. Box 3049, 67653 Kaiserslautern, Germany
| | - W Hübner
- Department of Physics and Research Center OPTIMAS, Technische Universität Kaiserslautern, P.O. Box 3049, 67653 Kaiserslautern, Germany
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25
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Durante L, Hübner W, Lauersen KJ, Remacle C. Characterization of the GPR1/FUN34/YaaH protein family in the green microalga Chlamydomonas suggests their role as intracellular membrane acetate channels. Plant Direct 2019; 3:e00148. [PMID: 31245784 PMCID: PMC6556978 DOI: 10.1002/pld3.148] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2019] [Revised: 05/15/2019] [Accepted: 05/16/2019] [Indexed: 05/17/2023]
Abstract
The unicellular green microalga Chlamydomonas reinhardtii is a powerful photosynthetic model organism which is capable of heterotrophic growth on acetate as a sole carbon source. This capacity has enabled its use for investigations of perturbations in photosynthetic machinery as mutants can be recovered heterotrophically. Fixation of acetate into cellular carbon metabolism occurs first by its conversion into acetyl-CoA by a respective synthase and the generation of succinate by the glyoxylate cycle. These metabolic steps have been recently determined to largely occur in the peroxisomes of this alga; however, little is known about the trafficking and import of acetate or its subcellular compartmentalization. Recently, the genes of five proteins belonging to the GPR1/FUN34/YaaH (GFY) superfamily were observed to exhibit increased expression in C. reinhardtii upon acetate addition, however, no further characterization has been reported. Here, we provide several lines of evidence to implicate Cr GFY1-5 as channels which share structural homology with bacterial succinate-acetate channels and specifically localize to microbodies, which are surprisingly distinct from the glyoxylate cycle-containing peroxisomes. We demonstrate structural models, gene expression profiling, and in vivo fluorescence localization of all five isoforms in the algal cell to further support this role.
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Affiliation(s)
- Lorenzo Durante
- Genetics and Physiology of MicroalgaeInBios/PhytosystemsUniversity of LiegeLiegeBelgium
| | - Wolfgang Hübner
- Biomolecular PhotonicsDepartment of PhysicsBielefeld UniversityBielefeldGermany
| | - Kyle J. Lauersen
- Faculty of BiologyCenter for Biotechnology (CeBiTec)Bielefeld UniversityBielefeldGermany
| | - Claire Remacle
- Genetics and Physiology of MicroalgaeInBios/PhytosystemsUniversity of LiegeLiegeBelgium
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26
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Crozet P, Navarro FJ, Willmund F, Mehrshahi P, Bakowski K, Lauersen KJ, Pérez-Pérez ME, Auroy P, Gorchs Rovira A, Sauret-Gueto S, Niemeyer J, Spaniol B, Theis J, Trösch R, Westrich LD, Vavitsas K, Baier T, Hübner W, de Carpentier F, Cassarini M, Danon A, Henri J, Marchand CH, de Mia M, Sarkissian K, Baulcombe DC, Peltier G, Crespo JL, Kruse O, Jensen PE, Schroda M, Smith AG, Lemaire SD. Birth of a Photosynthetic Chassis: A MoClo Toolkit Enabling Synthetic Biology in the Microalga Chlamydomonas reinhardtii. ACS Synth Biol 2018; 7:2074-2086. [PMID: 30165733 DOI: 10.1021/acssynbio.8b00251] [Citation(s) in RCA: 122] [Impact Index Per Article: 20.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Microalgae are regarded as promising organisms to develop innovative concepts based on their photosynthetic capacity that offers more sustainable production than heterotrophic hosts. However, to realize their potential as green cell factories, a major challenge is to make microalgae easier to engineer. A promising approach for rapid and predictable genetic manipulation is to use standardized synthetic biology tools and workflows. To this end we have developed a Modular Cloning toolkit for the green microalga Chlamydomonas reinhardtii. It is based on Golden Gate cloning with standard syntax, and comprises 119 openly distributed genetic parts, most of which have been functionally validated in several strains. It contains promoters, UTRs, terminators, tags, reporters, antibiotic resistance genes, and introns cloned in various positions to allow maximum modularity. The toolkit enables rapid building of engineered cells for both fundamental research and algal biotechnology. This work will make Chlamydomonas the next chassis for sustainable synthetic biology.
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Affiliation(s)
- Pierre Crozet
- Institut de Biologie Physico-Chimique, UMR 8226, CNRS, Sorbonne Université, Paris, France
| | | | - Felix Willmund
- Department of Biology, Technische Universität Kaiserslautern, Kaiserslautern, 67663, Germany
| | - Payam Mehrshahi
- Department of Plant Sciences, University of Cambridge, Cambridge, CB2 3EA, U.K
| | - Kamil Bakowski
- Copenhagen Plant Science Centre, Department of Plant and Environmental Sciences, University of Copenhagen, Copenhagen, Denmark
| | - Kyle J. Lauersen
- Faculty of Biology, Center for Biotechnology (CeBiTec), Bielefeld University, Bielefeld, 33615, Germany
| | - Maria-Esther Pérez-Pérez
- Instituto de Bioquímica Vegetal y Fotosíntesis, CSIC-Universidad de Sevilla, Sevilla, 41092, Spain
| | - Pascaline Auroy
- Laboratoire de Bioénergétique et Biotechnologie des Bactéries et Microalgues Cadarache, Aix Marseille University, CEA, CNRS, BIAM, Saint Paul-Lez-Durance, France
| | - Aleix Gorchs Rovira
- Department of Plant Sciences, University of Cambridge, Cambridge, CB2 3EA, U.K
| | - Susana Sauret-Gueto
- Department of Plant Sciences, University of Cambridge, Cambridge, CB2 3EA, U.K
| | - Justus Niemeyer
- Department of Biology, Technische Universität Kaiserslautern, Kaiserslautern, 67663, Germany
| | - Benjamin Spaniol
- Department of Biology, Technische Universität Kaiserslautern, Kaiserslautern, 67663, Germany
| | - Jasmine Theis
- Department of Biology, Technische Universität Kaiserslautern, Kaiserslautern, 67663, Germany
| | - Raphael Trösch
- Department of Biology, Technische Universität Kaiserslautern, Kaiserslautern, 67663, Germany
| | - Lisa-Desiree Westrich
- Department of Biology, Technische Universität Kaiserslautern, Kaiserslautern, 67663, Germany
| | - Konstantinos Vavitsas
- Copenhagen Plant Science Centre, Department of Plant and Environmental Sciences, University of Copenhagen, Copenhagen, Denmark
| | - Thomas Baier
- Faculty of Biology, Center for Biotechnology (CeBiTec), Bielefeld University, Bielefeld, 33615, Germany
| | - Wolfgang Hübner
- Biomolecular Photonics, Department of Physics, Bielefeld University, Bielefeld, 33615, Germany
| | - Felix de Carpentier
- Institut de Biologie Physico-Chimique, UMR 8226, CNRS, Sorbonne Université, Paris, France
| | - Mathieu Cassarini
- Institut de Biologie Physico-Chimique, UMR 8226, CNRS, Sorbonne Université, Paris, France
| | - Antoine Danon
- Institut de Biologie Physico-Chimique, UMR 8226, CNRS, Sorbonne Université, Paris, France
| | - Julien Henri
- Institut de Biologie Physico-Chimique, UMR 8226, CNRS, Sorbonne Université, Paris, France
| | - Christophe H. Marchand
- Institut de Biologie Physico-Chimique, UMR 8226, CNRS, Sorbonne Université, Paris, France
| | - Marcello de Mia
- Institut de Biologie Physico-Chimique, UMR 8226, CNRS, Sorbonne Université, Paris, France
| | - Kevin Sarkissian
- Institut de Biologie Physico-Chimique, UMR 8226, CNRS, Sorbonne Université, Paris, France
| | - David C. Baulcombe
- Department of Plant Sciences, University of Cambridge, Cambridge, CB2 3EA, U.K
| | - Gilles Peltier
- Laboratoire de Bioénergétique et Biotechnologie des Bactéries et Microalgues Cadarache, Aix Marseille University, CEA, CNRS, BIAM, Saint Paul-Lez-Durance, France
| | - José-Luis Crespo
- Instituto de Bioquímica Vegetal y Fotosíntesis, CSIC-Universidad de Sevilla, Sevilla, 41092, Spain
| | - Olaf Kruse
- Faculty of Biology, Center for Biotechnology (CeBiTec), Bielefeld University, Bielefeld, 33615, Germany
| | - Poul-Erik Jensen
- Copenhagen Plant Science Centre, Department of Plant and Environmental Sciences, University of Copenhagen, Copenhagen, Denmark
| | - Michael Schroda
- Department of Biology, Technische Universität Kaiserslautern, Kaiserslautern, 67663, Germany
| | - Alison G. Smith
- Department of Plant Sciences, University of Cambridge, Cambridge, CB2 3EA, U.K
| | - Stéphane D. Lemaire
- Institut de Biologie Physico-Chimique, UMR 8226, CNRS, Sorbonne Université, Paris, France
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27
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Signorino G, Covaceuszach S, Bozzi M, Hübner W, Mönkemöller V, Konarev PV, Cassetta A, Brancaccio A, Sciandra F. Cover Image, Volume 39, Issue 2. Hum Mutat 2018. [DOI: 10.1002/humu.23391] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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28
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Signorino G, Covaceuszach S, Bozzi M, Hübner W, Mönkemöller V, Konarev PV, Cassetta A, Brancaccio A, Sciandra F. A dystroglycan mutation (p.Cys667Phe) associated to muscle-eye-brain disease with multicystic leucodystrophy results in ER-retention of the mutant protein. Hum Mutat 2017; 39:266-280. [PMID: 29134705 DOI: 10.1002/humu.23370] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2017] [Revised: 10/13/2017] [Accepted: 11/06/2017] [Indexed: 01/11/2023]
Abstract
Dystroglycan (DG) is a cell adhesion complex composed by two subunits, the highly glycosylated α-DG and the transmembrane β-DG. In skeletal muscle, DG is involved in dystroglycanopathies, a group of heterogeneous muscular dystrophies characterized by a reduced glycosylation of α-DG. The genes mutated in secondary dystroglycanopathies are involved in the synthesis of O-mannosyl glycans and in the O-mannosylation pathway of α-DG. Mutations in the DG gene (DAG1), causing primary dystroglycanopathies, destabilize the α-DG core protein influencing its binding to modifying enzymes. Recently, a homozygous mutation (p.Cys699Phe) hitting the β-DG ectodomain has been identified in a patient affected by muscle-eye-brain disease with multicystic leucodystrophy, suggesting that other mechanisms than hypoglycosylation of α-DG could be implicated in dystroglycanopathies. Herein, we have characterized the DG murine mutant counterpart by transfection in cellular systems and high-resolution microscopy. We observed that the mutation alters the DG processing leading to retention of its uncleaved precursor in the endoplasmic reticulum. Accordingly, small-angle X-ray scattering data, corroborated by biochemical and biophysical experiments, revealed that the mutation provokes an alteration in the β-DG ectodomain overall folding, resulting in disulfide-associated oligomerization. Our data provide the first evidence of a novel intracellular mechanism, featuring an anomalous endoplasmic reticulum-retention, underlying dystroglycanopathy.
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Affiliation(s)
- Giulia Signorino
- Istituto di Biochimica e Biochimica Clinica, Università Cattolica del Sacro Cuore, Roma, Italy
| | | | - Manuela Bozzi
- Istituto di Biochimica e Biochimica Clinica, Università Cattolica del Sacro Cuore, Roma, Italy.,Istituto di Chimica del Riconoscimento Molecolare - CNR c/o Istituto di Biochimica e Biochimica Clinica, Università Cattolica del Sacro Cuore, Roma, Italy
| | - Wolfgang Hübner
- Biomolecular Photonics, University of Bielefeld, Bielefeld, Germany
| | | | - Petr V Konarev
- A.V. Shubnikov Institute of Crystallography of Federal Scientific Research Centre "Crystallography and Photonics" of Russian Academy of Sciences, Leninsky prospect 59, Moscow, Russia
| | - Alberto Cassetta
- Istituto di Cristallografia - CNR, Trieste Outstation, Trieste, Italy
| | - Andrea Brancaccio
- Istituto di Chimica del Riconoscimento Molecolare - CNR c/o Istituto di Biochimica e Biochimica Clinica, Università Cattolica del Sacro Cuore, Roma, Italy.,School of Biochemistry, University of Bristol, Bristol, United Kingdom
| | - Francesca Sciandra
- Istituto di Chimica del Riconoscimento Molecolare - CNR c/o Istituto di Biochimica e Biochimica Clinica, Università Cattolica del Sacro Cuore, Roma, Italy
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29
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Slotta C, Schlüter T, Ruiz-Perera LM, Kadhim HM, Tertel T, Henkel E, Hübner W, Greiner JFW, Huser T, Kaltschmidt B, Kaltschmidt C. CRISPR/Cas9-mediated knockout of c-REL in HeLa cells results in profound defects of the cell cycle. PLoS One 2017; 12:e0182373. [PMID: 28767691 PMCID: PMC5540532 DOI: 10.1371/journal.pone.0182373] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2017] [Accepted: 07/17/2017] [Indexed: 12/17/2022] Open
Abstract
Cervical cancer is the fourth common cancer in women resulting worldwide in 266,000 deaths per year. Belonging to the carcinomas, new insights into cervical cancer biology may also have great implications for finding new treatment strategies for other kinds of epithelial cancers. Although the transcription factor NF-κB is known as a key player in tumor formation, the relevance of its particular subunits is still underestimated. Here, we applied CRISPR/Cas9n-mediated genome editing to successfully knockout the NF-κB subunit c-REL in HeLa Kyoto cells as a model system for cervical cancers. We successfully generated a homozygous deletion in the c-REL gene, which we validated using sequencing, qPCR, immunocytochemistry, western blot analysis, EMSA and analysis of off-target effects. On the functional level, we observed the deletion of c-REL to result in a significantly decreased cell proliferation in comparison to wildtype (wt) without affecting apoptosis. The impaired proliferative behavior of c-REL-/- cells was accompanied by a strongly decreased amount of the H2B protein as well as a significant delay in the prometaphase of mitosis compared to c-REL+/+ HeLa Kyoto cells. c-REL-/- cells further showed significantly decreased expression levels of c-REL target genes in comparison to wt. In accordance to our proliferation data, we observed the c-REL knockout to result in a significantly increased resistance against the chemotherapeutic agents 5-Fluoro-2'-deoxyuridine (5-FUDR) and cisplatin. In summary, our findings emphasize the importance of c-REL signaling in a cellular model of cervical cancer with direct clinical implications for the development of new treatment strategies.
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Affiliation(s)
- Carsten Slotta
- Department of Cell Biology, University of Bielefeld, Bielefeld, Germany
| | - Thomas Schlüter
- Department of Cell Biology, University of Bielefeld, Bielefeld, Germany
| | | | | | - Tobias Tertel
- Department of Cell Biology, University of Bielefeld, Bielefeld, Germany
| | - Elena Henkel
- Department of Cell Biology, University of Bielefeld, Bielefeld, Germany
| | - Wolfgang Hübner
- Biomolecular Photonics, University of Bielefeld, Bielefeld, Germany
| | | | - Thomas Huser
- Biomolecular Photonics, University of Bielefeld, Bielefeld, Germany
| | - Barbara Kaltschmidt
- Department of Cell Biology, University of Bielefeld, Bielefeld, Germany
- AG Molecular Neurobiology, University of Bielefeld, Bielefeld, Germany
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30
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Schwarzhans JP, Luttermann T, Wibberg D, Winkler A, Hübner W, Huser T, Kalinowski J, Friehs K. A Mitochondrial Autonomously Replicating Sequence from Pichia pastoris for Uniform High Level Recombinant Protein Production. Front Microbiol 2017; 8:780. [PMID: 28512458 PMCID: PMC5411459 DOI: 10.3389/fmicb.2017.00780] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2017] [Accepted: 04/18/2017] [Indexed: 12/14/2022] Open
Abstract
Pichia pastoris is a non-conventional methylotrophic yeast that is widely used for recombinant protein production, typically by stably integrating the target gene into the genome as part of an expression cassette. However, the comparatively high clonal variability associated with this approach usually necessitates a time intense screening step in order to find strains with the desired productivity. Some of the factors causing this clonal variability can be overcome using episomal vectors containing an autonomously replicating sequence (ARS). Here, we report on the discovery, characterization, and application of a fragment of mitochondrial DNA from P. pastoris for use as an ARS. First encountered as an off-target event in an experiment aiming for genomic integration, the newly created circular plasmid named “pMito” consists of the expression cassette and a fragment of mitochondrial DNA. Multiple matches to known ARS consensus sequence motifs, but no exact match to known chromosomal ARS from P. pastoris were detected on the fragment, indicating the presence of a novel ARS element. Different variants of pMito were successfully used for transformation and their productivity characteristics were assayed. All analyzed clones displayed a highly uniform expression level, exceeding by up to fourfold that of a reference with a single copy integrated in its genome. Expressed GFP could be localized exclusively to the cytoplasm via super-resolution fluorescence microscopy, indicating that pMito is present in the nucleus. While expression levels were homogenous among pMito clones, an apparent upper limit of expression was visible that could not be explained based on the gene dosage. Further investigation is necessary to fully understand the bottle-neck hindering this and other ARS vectors in P. pastoris from reaching their full capability. Lastly, we could demonstrate that the mitochondrial ARS from P. pastoris is also suitable for episomal vector transformation in Saccharomyces cerevisiae, widening the potential for biotechnological application. pMito displayed strong potential to reduce clonal variability in experiments targeting recombinant protein production. These findings also showcase the as of yet largely untapped potential of mitochondrial ARS from different yeasts for biotechnological applications.
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Affiliation(s)
- Jan-Philipp Schwarzhans
- Fermentation Engineering, Faculty of Technology, Bielefeld UniversityBielefeld, Germany.,Microbial Genomics and Biotechnology, Center for Biotechnology (CeBiTec), Bielefeld UniversityBielefeld, Germany
| | - Tobias Luttermann
- Fermentation Engineering, Faculty of Technology, Bielefeld UniversityBielefeld, Germany.,Microbial Genomics and Biotechnology, Center for Biotechnology (CeBiTec), Bielefeld UniversityBielefeld, Germany
| | - Daniel Wibberg
- Genome Research of Industrial Microorganisms, CeBiTec, Bielefeld UniversityBielefeld, Germany
| | - Anika Winkler
- Microbial Genomics and Biotechnology, Center for Biotechnology (CeBiTec), Bielefeld UniversityBielefeld, Germany
| | - Wolfgang Hübner
- Biomolecular Photonics, Faculty of Physics, Bielefeld UniversityBielefeld, Germany
| | - Thomas Huser
- Biomolecular Photonics, Faculty of Physics, Bielefeld UniversityBielefeld, Germany
| | - Jörn Kalinowski
- Microbial Genomics and Biotechnology, Center for Biotechnology (CeBiTec), Bielefeld UniversityBielefeld, Germany
| | - Karl Friehs
- Fermentation Engineering, Faculty of Technology, Bielefeld UniversityBielefeld, Germany
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31
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Jaeger D, Hübner W, Huser T, Mussgnug JH, Kruse O. Nuclear transformation and functional gene expression in the oleaginous microalga Monoraphidium neglectum. J Biotechnol 2017; 249:10-15. [DOI: 10.1016/j.jbiotec.2017.03.011] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2017] [Revised: 03/07/2017] [Accepted: 03/11/2017] [Indexed: 01/22/2023]
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32
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Abstract
We demonstrate ultrafast (∼100 fs) and reversible spin switching on the endohedral fullerene Ni@B80viaΛ processes.
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Affiliation(s)
- Chun Li
- School of Mechanics
- Civil Engineering and Architecture
- Northwestern Polytechnical University
- Xi'an 710072
- China
| | - Jing Liu
- School of Mechanics
- Civil Engineering and Architecture
- Northwestern Polytechnical University
- Xi'an 710072
- China
| | - Georgios Lefkidis
- School of Mechanics
- Civil Engineering and Architecture
- Northwestern Polytechnical University
- Xi'an 710072
- China
| | - Wolfgang Hübner
- Department of Physics and Research Center OPTIMAS
- University of Kaiserslautern
- 67653 Kaiserslautern
- Germany
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Lauersen KJ, Baier T, Wichmann J, Wördenweber R, Mussgnug JH, Hübner W, Huser T, Kruse O. Efficient phototrophic production of a high-value sesquiterpenoid from the eukaryotic microalga Chlamydomonas reinhardtii. Metab Eng 2016; 38:331-343. [DOI: 10.1016/j.ymben.2016.07.013] [Citation(s) in RCA: 93] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2016] [Revised: 06/17/2016] [Accepted: 07/26/2016] [Indexed: 02/07/2023]
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Müller M, Mönkemöller V, Hennig S, Hübner W, Huser T. Open-source image reconstruction of super-resolution structured illumination microscopy data in ImageJ. Nat Commun 2016; 7:10980. [PMID: 26996201 PMCID: PMC4802170 DOI: 10.1038/ncomms10980] [Citation(s) in RCA: 121] [Impact Index Per Article: 15.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2015] [Accepted: 02/08/2016] [Indexed: 12/19/2022] Open
Abstract
Super-resolved structured illumination microscopy (SR-SIM) is an important tool for fluorescence microscopy. SR-SIM microscopes perform multiple image acquisitions with varying illumination patterns, and reconstruct them to a super-resolved image. In its most frequent, linear implementation, SR-SIM doubles the spatial resolution. The reconstruction is performed numerically on the acquired wide-field image data, and thus relies on a software implementation of specific SR-SIM image reconstruction algorithms. We present fairSIM, an easy-to-use plugin that provides SR-SIM reconstructions for a wide range of SR-SIM platforms directly within ImageJ. For research groups developing their own implementations of super-resolution structured illumination microscopy, fairSIM takes away the hurdle of generating yet another implementation of the reconstruction algorithm. For users of commercial microscopes, it offers an additional, in-depth analysis option for their data independent of specific operating systems. As a modular, open-source solution, fairSIM can easily be adapted, automated and extended as the field of SR-SIM progresses. Reconstruction of super resolution structured illumination microscopy (SR-SIM) datasets typically relies upon commercial software. Here Müller et al. present an open-source ImageJ plugin to facilitate reconstruction of SR-SIM data from a broad range of microscopy platforms.
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Affiliation(s)
- Marcel Müller
- Biomolecular Photonics, Department of Physics, University of Bielefeld, 33615 Bielefeld, Germany
| | - Viola Mönkemöller
- Biomolecular Photonics, Department of Physics, University of Bielefeld, 33615 Bielefeld, Germany
| | - Simon Hennig
- Biomolecular Photonics, Department of Physics, University of Bielefeld, 33615 Bielefeld, Germany
| | - Wolfgang Hübner
- Biomolecular Photonics, Department of Physics, University of Bielefeld, 33615 Bielefeld, Germany
| | - Thomas Huser
- Biomolecular Photonics, Department of Physics, University of Bielefeld, 33615 Bielefeld, Germany.,Department of Internal Medicine and NSF Center for Biophotonics, University of California, Davis, Sacramento, California 95817, USA
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Abstract
Stress urinary incontinence in men is predominantly iatrogenic whereby radical prostatectomy is the most common cause with persistent stress urinary incontinence rates varying between 10 % and 25 %. The first line therapy for postoperative male stress urinary incontinence is physiotherapy, especially pelvic floor muscle rehabilitation. If conservative treatment fails to show sufficient improvement, surgical therapy is recommended. Several treatment options are currently available for the surgical treatment of male stress urinary incontinence including artificial sphincters, adjustable and functional sling systems, bulking agents and implantable balloon systems.
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Affiliation(s)
- R M Bauer
- Urologische Klinik und Poliklinik, Klinikum der Universität München - Campus Großhadern, Ludwig-Maximilians-Universität, Marchioninistr. 15, 81377, München, Deutschland,
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Abstract
Zodiacal and Planetary 'decani'. The 36 ecliptical 'decani' (sectors of 10°) were distributed either to the twelve zodiacal signs or to the seven planets. The first system has been transmitted only by the Roman didactic poet Manilius, who commits an error at the end of his catalogue that can be explained by comparing it with the more frequent planetary one. Both systems follow the Roman calendar beginning with the Ram respectively Mars. Although the zodiacal system (36 : 12) runs without remainder whereas the planetary one (36 : 7) repeats Mars once more (six times), so that it both begins and ends with this planet, this planetary system prevails. Four possible astrological reasons of this contradiction are discussed including other texts, mostly taken from the 'Babylonian' Teucrus (at the latest first century BC), who represents the first witness, if not the inventor of this particular lore.
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Mönkemöller V, Øie C, Hübner W, Huser T, McCourt P. Multimodal super-resolution optical microscopy visualizes the close connection between membrane and the cytoskeleton in liver sinusoidal endothelial cell fenestrations. Sci Rep 2015; 5:16279. [PMID: 26549018 PMCID: PMC4637861 DOI: 10.1038/srep16279] [Citation(s) in RCA: 56] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2015] [Accepted: 10/14/2015] [Indexed: 11/09/2022] Open
Abstract
Liver sinusoidal endothelial cells (LSECs) act as a filter between blood and the hepatocytes. LSECs are highly fenestrated cells; they contain transcellular pores with diameters between 50 to 200 nm. The small sizes of the fenestrae have so far prohibited any functional analysis with standard and advanced light microscopy techniques. Only the advent of super-resolution optical fluorescence microscopy now permits the recording of such small cellular structures. Here, we demonstrate the complementary use of two different super-resolution optical microscopy modalities, 3D structured illumination microscopy (3D-SIM) and single molecule localization microscopy in a common optical platform to obtain new insights into the association between the cytoskeleton and the plasma membrane that supports the formation of fenestrations. We applied 3D-SIM to multi-color stained LSECs to acquire highly resolved overviews of large sample areas. We then further increased the spatial resolution for imaging fenestrations by single molecule localization microscopy applied to select small locations of interest in the same sample on the same microscope setup. We optimized the use of fluorescent membrane stains for these imaging conditions. The combination of these techniques offers a unique opportunity to significantly improve studies of subcellular ultrastructures such as LSEC fenestrations.
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Affiliation(s)
- Viola Mönkemöller
- Biomolecular Photonics, Department of Physics, Bielefeld University, Universitätsstr. 25, 33615 Bielefeld, Germany
| | - Cristina Øie
- Faculty of Health Sciences, Department of Medical Biology, Vascular Biology Research Group, The Arctic University of Norway, 9037 Tromsø, Norway
| | - Wolfgang Hübner
- Biomolecular Photonics, Department of Physics, Bielefeld University, Universitätsstr. 25, 33615 Bielefeld, Germany
| | - Thomas Huser
- Biomolecular Photonics, Department of Physics, Bielefeld University, Universitätsstr. 25, 33615 Bielefeld, Germany.,Department of Internal Medicine, and NSF Center for Biophotonics, University of California, Davis, 2700 Stockton Blvd., Ste. 1400, Sacramento, CA 95817, USA
| | - Peter McCourt
- Faculty of Health Sciences, Department of Medical Biology, Vascular Biology Research Group, The Arctic University of Norway, 9037 Tromsø, Norway
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Chaudhuri D, Jin W, Lefkidis G, Hübner W. Ab initio theory for femtosecond spin dynamics, angle-resolved fidelity analysis, and the magneto-optical Kerr effect in the Ni3(CH3OH) and Co3+(CH3OH) clusters. J Chem Phys 2015; 143:174303. [DOI: 10.1063/1.4932949] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- D. Chaudhuri
- Department of Physics and Research Center OPTIMAS, University of Kaiserslautern, P.O. Box 3049, 67653 Kaiserslautern, Germany
| | - W. Jin
- Department of Physics and Research Center OPTIMAS, University of Kaiserslautern, P.O. Box 3049, 67653 Kaiserslautern, Germany
- School of Physics and Information Technology, Shaanxi Normal University, Xi’an 710119, China
| | - G. Lefkidis
- Department of Physics and Research Center OPTIMAS, University of Kaiserslautern, P.O. Box 3049, 67653 Kaiserslautern, Germany
| | - W. Hübner
- Department of Physics and Research Center OPTIMAS, University of Kaiserslautern, P.O. Box 3049, 67653 Kaiserslautern, Germany
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Gazea M, Tasouri E, Tolve M, Bosch V, Kabanova A, Gojak C, Kurtulmus B, Novikov O, Spatz J, Pereira G, Hübner W, Brodski C, Tucker KL, Blaess S. Primary cilia are critical for Sonic hedgehog-mediated dopaminergic neurogenesis in the embryonic midbrain. Dev Biol 2015; 409:55-71. [PMID: 26542012 DOI: 10.1016/j.ydbio.2015.10.033] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2015] [Revised: 10/21/2015] [Accepted: 10/30/2015] [Indexed: 02/07/2023]
Abstract
Midbrain dopaminergic (mDA) neurons modulate various motor and cognitive functions, and their dysfunction or degeneration has been implicated in several psychiatric diseases. Both Sonic Hedgehog (Shh) and Wnt signaling pathways have been shown to be essential for normal development of mDA neurons. Primary cilia are critical for the development of a number of structures in the brain by serving as a hub for essential developmental signaling cascades, but their role in the generation of mDA neurons has not been examined. We analyzed mutant mouse lines deficient in the intraflagellar transport protein IFT88, which is critical for primary cilia function. Conditional inactivation of Ift88 in the midbrain after E9.0 results in progressive loss of primary cilia, a decreased size of the mDA progenitor domain, and a reduction in mDA neurons. We identified Shh signaling as the primary cause of these defects, since conditional inactivation of the Shh signaling pathway after E9.0, through genetic ablation of Gli2 and Gli3 in the midbrain, results in a phenotype basically identical to the one seen in Ift88 conditional mutants. Moreover, the expansion of the mDA progenitor domain observed when Shh signaling is constitutively activated does not occur in absence of Ift88. In contrast, clusters of Shh-responding progenitors are maintained in the ventral midbrain of the hypomorphic Ift88 mouse mutant, cobblestone. Despite the residual Shh signaling, the integrity of the mDA progenitor domain is severely disturbed, and consequently very few mDA neurons are generated in cobblestone mutants. Our results identify for the first time a crucial role of primary cilia in the induction of mDA progenitors, define a narrow time window in which Shh-mediated signaling is dependent upon normal primary cilia function for this purpose, and suggest that later Wnt signaling-dependent events act independently of primary cilia.
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Affiliation(s)
- Mary Gazea
- Institute of Reconstructive Neurobiology, University of Bonn, 53127 Bonn, Germany
| | - Evangelia Tasouri
- Interdisciplinary Center for Neurosciences, University of Heidelberg, 69120 Heidelberg, Germany; Institute of Anatomy and Cell Biology, University of Heidelberg, 69120 Heidelberg, Germany
| | - Marianna Tolve
- Institute of Reconstructive Neurobiology, University of Bonn, 53127 Bonn, Germany
| | - Viktoria Bosch
- Institute of Reconstructive Neurobiology, University of Bonn, 53127 Bonn, Germany
| | - Anna Kabanova
- Institute of Reconstructive Neurobiology, University of Bonn, 53127 Bonn, Germany
| | - Christian Gojak
- Department of Biophysical Chemistry, University of Heidelberg, 69120 Heidelberg, Germany; Department of New Materials and Biosystems, Max Planck Institute for Intelligent Systems, 70569 Stuttgart, Germany
| | - Bahtiyar Kurtulmus
- Molecular Biology of Centrosomes and Cilia, German Cancer Research Center, DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany
| | - Orna Novikov
- Department of Physiology and Cell Biology, Zlotowski Center for Neuroscience, Faculty of Health Sciences, Ben-Gurion University of the Negev, Beer Sheva 84105, Israel
| | - Joachim Spatz
- Department of Biophysical Chemistry, University of Heidelberg, 69120 Heidelberg, Germany; Department of New Materials and Biosystems, Max Planck Institute for Intelligent Systems, 70569 Stuttgart, Germany
| | - Gislene Pereira
- Molecular Biology of Centrosomes and Cilia, German Cancer Research Center, DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany
| | - Wolfgang Hübner
- Molecular Biophotonics, University of Bielefeld, 33615 Bielefeld, Germany
| | - Claude Brodski
- Department of Physiology and Cell Biology, Zlotowski Center for Neuroscience, Faculty of Health Sciences, Ben-Gurion University of the Negev, Beer Sheva 84105, Israel
| | - Kerry L Tucker
- Interdisciplinary Center for Neurosciences, University of Heidelberg, 69120 Heidelberg, Germany; Institute of Anatomy and Cell Biology, University of Heidelberg, 69120 Heidelberg, Germany; University of New England, College of Osteopathic Medicine, Department of Biomedical Sciences, Center for Excellence in the Neurosciences, Biddeford, ME 04005, USA.
| | - Sandra Blaess
- University of New England, College of Osteopathic Medicine, Department of Biomedical Sciences, Center for Excellence in the Neurosciences, Biddeford, ME 04005, USA.
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Hübner W, Klett C. Der Einfluß von Sauerstoff- und Wasserdampfzusätzen auf die lonenbeweglichkeit und Elektronen-Anlagerungswahrscheinlichkeit in Stickstoff. ACTA ACUST UNITED AC 2014. [DOI: 10.1515/zna-1962-0904] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
In einer mit Stickstoff (1 atm) gefüllten Ionisationskammer werden durch RÖNTGEN-Strahlenimpulse Impulse von positiven und negativen Ladungsträgern erzeugt, die oszillographiert werden. Dem Stickstoff wird Sauerstoff (bis 2,5 Vol.-Proz.) und/oder Wasserdampf (bis 2,3 Vol.-Proz.) zugesetzt. Aus den Oszillogrammen werden die Ionenbeweglichkeiten und Elektronenanlagerungswahrscheinlichkeiten ermittelt. Die Beweglichkeiten werden durch Wasserdampfbeimengungen stark herabgesetzt. Die Elektronenanlagerungswahrscheinlichkeit nimmt mit dem Sauerstoffgehalt zu. In Stickstoff mit 2,3 Vol.-Proz. Wasserdampf ist sie jedoch rund 10-mal größer als in trockenem Stickstoff. Wasserdampf allein scheint in Stickstoff keine Elektronen anzulagern.
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Affiliation(s)
- W. Hübner
- Mitteilung aus der Physikalisch-Technischen Bundesanstalt, Braunschweig
| | - C. Klett
- Mitteilung aus der Physikalisch-Technischen Bundesanstalt, Braunschweig
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41
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Blume A, Hübner W, Müller M, Bäuerle HD. Structure and Dynamics of Lipid Model Membranes: FT-IR- and2H-NMR-Spectroscopic Studies. ACTA ACUST UNITED AC 2014. [DOI: 10.1002/bbpc.198800242] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Jansson S, Hübner W, Östberg G, Pourbaix MD. Oxidation Resistance of Some Stainless Steels and Nickel-Based Alloys in High-Temperature Water and Steam. ACTA ACUST UNITED AC 2013. [DOI: 10.1179/000705969798325802] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
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Klatte T, Zigeuner R, Rouprêt M, Babjuk M, Capitanio U, Cha E, Colin P, Comploj E, Dalpiaz O, Fritsche HM, Herrmann T, Hora M, Hübner W, Merseburger A, Montorsi F, Nison L, Novara G, Roscigno M, Shariat S, Remzi M. 575 Segmental ureterectomy versus radical nephroureterectomy for urothelial cancer of the ureter: A matched-pair analysis. ACTA ACUST UNITED AC 2013. [DOI: 10.1016/s1569-9056(13)61058-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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45
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Jin W, Rupp F, Chevalier K, Wolf MMN, Rojas MC, Lefkidis G, Krüger HJ, Diller R, Hübner W. Combined theoretical and experimental study of spin and charge dynamics on the homodinuclear complex [Ni2(II)(L-N4Me2)(emb)]. Phys Rev Lett 2012; 109:267209. [PMID: 23368615 DOI: 10.1103/physrevlett.109.267209] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2012] [Revised: 10/12/2012] [Indexed: 06/01/2023]
Abstract
We present a combined theoretical and experimental study of spin and charge dynamics on the homodinuclear compound [Ni2(II)(L-N4Me2)(emb)]. The theoretically calculated oscillator strengths of the ground-state absorption spectrum show an acceptable agreement with experiment. We predict a local ultrafast laser-induced spin-flip scenario, which involves charge-transfer states. Experimentally, we observe charge dynamics on two different time scales. The two relevant, transient electronic states and their electronic properties are also theoretically characterized. These results provide a joint investigation of the homodinuclear complex and suggest a realistic scenario for ultrafast spin dynamics and other optical-related manipulations.
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Affiliation(s)
- W Jin
- Department of Physics, University of Kaiserslautern, PO Box 3049, 67653 Kaiserslautern, Germany.
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46
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Morlacchi S, Sciandra F, Bigotti MG, Bozzi M, Hübner W, Galtieri A, Giardina B, Brancaccio A. Insertion of a myc-tag within α-dystroglycan domains improves its biochemical and microscopic detection. BMC Biochem 2012; 13:14. [PMID: 22835149 PMCID: PMC3432625 DOI: 10.1186/1471-2091-13-14] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/16/2012] [Accepted: 07/26/2012] [Indexed: 01/16/2023]
Abstract
BACKGROUND Epitope tags and fluorescent fusion proteins have become indispensable molecular tools for studies in the fields of biochemistry and cell biology. The knowledge collected on the subdomain organization of the two subunits of the adhesion complex dystroglycan (DG) enabled us to insert the 10 amino acids myc-tag at different locations along the α-subunit, in order to better visualize and investigate the DG complex in eukaryotic cells. RESULTS We have generated two forms of DG polypeptides via the insertion of the myc-tag 1) within a flexible loop (between a.a. 170 and 171) that separates two autonomous subdomains, and 2) within the C-terminal domain in position 500. Their analysis showed that double-tagging (the β-subunit is linked to GFP) does not significantly interfere with the correct processing of the DG precursor (pre-DG) and confirmed that the α-DG N-terminal domain is processed in the cell before α-DG reaches its plasma membrane localization. In addition, myc insertion in position 500, right before the second Ig-like domain of α-DG, proved to be an efficient tool for the detection and pulling-down of glycosylated α-DG molecules targeted at the membrane. CONCLUSIONS Further characterization of these and other myc-permissive site(s) will represent a valid support for the study of the maturation process of pre-DG and could result in the creation of a new class of intrinsic doubly-fluorescent DG molecules that would allow the monitoring of the two DG subunits, or of pre-DG, in cells without the need of antibodies.
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Affiliation(s)
- Simona Morlacchi
- Istituto di Chimica del Riconoscimento Molecolare (CNR) c/o Istituto di Biochimica e Biochimica Clinica, Università Cattolica del Sacro Cuore, Largo F, Vito 1, Rome, Italy.
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Sciandra F, Angelucci E, Altieri F, Ricci D, Hübner W, Petrucci TC, Giardina B, Brancaccio A, Bozzi M. Dystroglycan is associated to the disulfide isomerase ERp57. Exp Cell Res 2012; 318:2460-9. [PMID: 22814252 PMCID: PMC3459099 DOI: 10.1016/j.yexcr.2012.07.006] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2012] [Revised: 06/27/2012] [Accepted: 07/08/2012] [Indexed: 11/26/2022]
Abstract
Dystroglycan (DG) is an extracellular receptor composed of two subunits, α-DG and β-DG, connected through the α-DG C-terminal domain and the β-DG N-terminal domain. We report an alanine scanning of all DG cysteine residues performed on DG-GFP constructs overexpressed in 293-Ebna cells, demonstrating that Cys-669 and Cys-713, both located within the β-DG N-terminal domain, are key residues for the DG precursor cleavage and trafficking, but not for the interaction between the two DG subunits. In addition, we have used immunprecipitation and confocal microscopy showing that ERp57, a member of the disulfide isomerase family involved in glycoprotein folding, is associated and colocalizes immunohistochemically with β-DG in the ER and at the plasma membrane of 293-Ebna cells. The β-DG–ERp57 complex also included α-DG. DG mutants, unable to undergo the precursor cleavage, were still associated to ERp57. β-DG and ERp57 were also co-immunoprecipitated in rat heart and kidney tissues. In vitro, a mutant ERp57, mimicking the reduced form of the wild-type protein, interacts directly with the recombinant N-terminal domain of both α-DG and β-DG with apparent dissociation constant values in the micromolar range. ERp57 is likely to be involved in the DG processing/maturation pathway, but its association to the mature DG complex might also suggest some further functional role that needs to be investigated.
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Affiliation(s)
- Francesca Sciandra
- Istituto di Chimica del Riconoscimento Molecolare (CNR), c/o Istituto di Biochimica e Biochimica Clinica, Università Cattolica del Sacro Cuore, Largo F. Vito 1, 00168 Roma, Italy
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Lefkidis G, Li C, Pal G, Blug M, Kelm H, Krüger HJ, Hübner W. Ab Initio Theory for Ultrafast Magnetic Local Spin Flip on the Newly Synthesized Homodinuclear Complex [NiII2(l-N4Me2)(emb)]. J Phys Chem A 2011; 115:1774-80. [DOI: 10.1021/jp107046r] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- G. Lefkidis
- Department of Physics and Research Center OPTIMAS, Kaiserslautern University of Technology, PO Box 3049, 67653 Kaiserslautern, Germany
| | - C. Li
- School of Mechanics, Civil Engineering and Architecture, Northwestern Polytechnical University, Xi’an 710072, China
| | - G. Pal
- Physikalisch-Technische Bundesanstalt (PTB), Bundesallee 100, 38116 Braunschweig, Germany
| | - M. Blug
- Department of Chemistry, Kaiserslautern University of Technology, PO Box 3049, 67653 Kaiserslautern, Germany
| | - H. Kelm
- Department of Chemistry, Kaiserslautern University of Technology, PO Box 3049, 67653 Kaiserslautern, Germany
| | - H.-J. Krüger
- Department of Chemistry, Kaiserslautern University of Technology, PO Box 3049, 67653 Kaiserslautern, Germany
| | - W. Hübner
- Department of Physics and Research Center OPTIMAS, Kaiserslautern University of Technology, PO Box 3049, 67653 Kaiserslautern, Germany
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50
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Dale B, McNerney GP, Thompson DL, Hübner W, Huser T, Chen BK. Visualizing cell-to-cell transfer of HIV using fluorescent clones of HIV and live confocal microscopy. J Vis Exp 2010:2061. [PMID: 20972408 DOI: 10.3791/2061] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022] Open
Abstract
By fusing the green fluorescent protein to their favorite proteins, biologists now have the ability to study living complex cellular processes using fluorescence video microscopy. To track the movements of the human immunodeficiency virus core protein during cell-to-cell transmission of human immunodeficiency virus, we have GFP-tagged the Gag protein in the context of an infectious molecular clone of HIV, called HIV Gag-iGFP. We study this viral clone using video confocal microscopy. In the following visualized experiment, we transfect a human T cell line with HIV Gag-iGFP, and we use fluorescently labeled uninfected CD4+ T cells to serve as target cells for the virus. Using the different fluorescent labels we can readily follow viral production and transport across intercellular structures called virological synapses. Simple gas permeable imaging chambers allow us to observe synapses with live confocal microscopy from minutes to days. These approaches can be used to track viral proteins as they move in from one cell to the next.
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Affiliation(s)
- Benjamin Dale
- Division of Infectious Diseases, Department of Medicine, Immunology Institute, Mount Sinai School of Medicine
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