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Hasan MM, Islam Z. Data describing effects of different phosphorus concentrations on growth and chymotrypsin inhibitors in Microcystis aeruginosa NIVA Cya 43 using LC-MS. Data Brief 2024; 53:110121. [PMID: 38419766 PMCID: PMC10900759 DOI: 10.1016/j.dib.2024.110121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Revised: 01/03/2024] [Accepted: 01/23/2024] [Indexed: 03/02/2024] Open
Abstract
Cyanobacteria's abundant production of bioactive compounds concerns unselective filter feeders in the aquatic food chain, but the factors driving this production remain poorly understood. Notably, nutrient availability, particularly concerning phosphorus and nitrogen, is believed to be a pivotal determinant of cyanobacterial mass development. In this data investigation, we aimed to explore the influence of dissolved phosphorus (PO43-) on the presence of chymotrypsin inhibitors, specifically Cyanopeptolin 954 (CP954) and Nostopeptin 920 (BN920), within Microcystis aeruginosa NIVA Cya 43. A carefully controlled 15-day batch culture experiment was conducted, with three distinct phosphate concentrations (30, 50, and 75 µM). Liquid Chromatography-Mass Spectrometry (LC-MS) was employed for quantitative analysis, and the findings underscored the intricate interplay between nutrient availability, particularly phosphorus, and the content of chymotrypsin inhibitors (CP954 and BN920) by Cyanobacteria. More precisely, a significant 53% increase in CP954 content was noticed as the phosphate concentration decreased, revealing the intricate connection between nutrient availability, particularly phosphorus, in Cyanobacteria. Future research should further investigate the impacts of environmental factors, including light intensity and other nutrients like nitrogen, on the content of chymotrypsin inhibitors in Cyanobacteria.
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Affiliation(s)
- Md. Mohibul Hasan
- Department of Environmental Toxicology, Faculty of Biology, Universität Duisburg-Essen, Universitätsstraße 2, 45141 Essen, Germany
- Biozentrum, Institute of Zoology, Faculty of Mathematics and Natural Sciences, Universität zu Köln, Albertus-Magnus-Platz 50923 Köln, Germany
| | - Zahidul Islam
- Bangladesh Fisheries Research Institute, Marine Fisheries and Technology Station, Cox's Bazar - 4700, Bangladesh
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2
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Afroze F, Khoshnevisan F, Harawa PP, Islam Z, Bourdon C, Khoswe S, Islam M, Sarker SA, Islam F, Sayeem Bin Shahid ASM, Joosten K, Hulst JM, Eneya C, Walson JL, Berkley JA, Potani I, Voskuijl W, Ahmed T, Chisti MJ, Bandsma RHJ. Trajectories of resting energy expenditure and performance of predictive equations in children hospitalized with an acute illness and malnutrition: a longitudinal study. Sci Rep 2024; 14:3613. [PMID: 38351162 PMCID: PMC10864294 DOI: 10.1038/s41598-024-53791-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Accepted: 02/05/2024] [Indexed: 02/16/2024] Open
Abstract
There is scarce data on energy expenditure in ill children with different degrees of malnutrition. This study aimed to determine resting energy expenditure (REE) trajectories in hospitalized malnourished children during and after hospitalization. We followed a cohort of children in Bangladesh and Malawi (2-23 months) with: no wasting (NW); moderate wasting (MW), severe wasting (SW), or edematous malnutrition (EM). REE was measured by indirect calorimetry at admission, discharge, 14-and-45-days post-discharge. 125 children (NW, n = 23; MW, n = 29; SW, n = 51; EM, n = 22), median age 9 (IQR 6, 14) months, provided 401 REE measurements. At admission, the REE of children with NW and MW was 67 (95% CI [58, 75]) and 70 (95% CI [63, 76]) kcal/kg/day, respectively, while REE in children with SW was higher, 79 kcal/kg/day (95% CI [74, 84], p = 0.018), than NW. REE in these groups was stable over time. In children with EM, REE increased from admission to discharge (65 kcal/kg/day, 95% CI [56, 73]) to 79 (95% CI [72, 86], p = 0.0014) and was stable hereafter. Predictive equations underestimated REE in 92% of participants at all time points. Recommended feeding targets during the acute phase of illness in severely malnourished children exceeded REE. Acutely ill malnourished children are at risk of being overfed when implementing current international guidelines.
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Affiliation(s)
- Farzana Afroze
- The Childhood Acute Illness and Nutrition (CHAIN) Network, Nairobi, Kenya
- Nutrition Research Division (NRD), International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b), Dhaka, Bangladesh
| | - Farnaz Khoshnevisan
- The Childhood Acute Illness and Nutrition (CHAIN) Network, Nairobi, Kenya
- Translational Medicine, Hospital for Sick Children, Toronto, Canada
| | - Philliness Prisca Harawa
- The Childhood Acute Illness and Nutrition (CHAIN) Network, Nairobi, Kenya
- Department of Paediatrics and Child Health, Kamuzu University of Health Sciences, Blantyre, Malawi
| | - Zahidul Islam
- The Childhood Acute Illness and Nutrition (CHAIN) Network, Nairobi, Kenya
- Nutrition Research Division (NRD), International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b), Dhaka, Bangladesh
| | - Celine Bourdon
- The Childhood Acute Illness and Nutrition (CHAIN) Network, Nairobi, Kenya
- Translational Medicine, Hospital for Sick Children, Toronto, Canada
| | - Stanley Khoswe
- The Childhood Acute Illness and Nutrition (CHAIN) Network, Nairobi, Kenya
- Department of Paediatrics and Child Health, Kamuzu University of Health Sciences, Blantyre, Malawi
| | - Munirul Islam
- The Childhood Acute Illness and Nutrition (CHAIN) Network, Nairobi, Kenya
- Nutrition Research Division (NRD), International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b), Dhaka, Bangladesh
| | - Shafiqul Alam Sarker
- The Childhood Acute Illness and Nutrition (CHAIN) Network, Nairobi, Kenya
- Nutrition Research Division (NRD), International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b), Dhaka, Bangladesh
| | - Farhana Islam
- Nutrition Research Division (NRD), International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b), Dhaka, Bangladesh
| | - Abu Sadat Mohammad Sayeem Bin Shahid
- The Childhood Acute Illness and Nutrition (CHAIN) Network, Nairobi, Kenya
- Nutrition Research Division (NRD), International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b), Dhaka, Bangladesh
| | - Koen Joosten
- Department of Neonatal and Paediatric Intensive Care, Division of Paediatric Intensive Care, Erasmus MC, Sophia Children's Hospital, Rotterdam, The Netherlands
| | - Jessie M Hulst
- Division of Paediatric Gastroenterology, Hepatology and Nutrition, The Hospital for Sick Children, Toronto, Canada
- Department of Nutritional Sciences, Faculty of Medicine, University of Toronto, Toronto, Canada
| | - Chisomo Eneya
- The Childhood Acute Illness and Nutrition (CHAIN) Network, Nairobi, Kenya
- Department of Paediatrics and Child Health, Kamuzu University of Health Sciences, Blantyre, Malawi
| | - Judd L Walson
- The Childhood Acute Illness and Nutrition (CHAIN) Network, Nairobi, Kenya
- Department of International Health, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, USA
| | - James A Berkley
- The Childhood Acute Illness and Nutrition (CHAIN) Network, Nairobi, Kenya
- Centre for Tropical Medicine and Global Health, University of Oxford, Oxford, UK
- Clinical Research Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya
| | - Isabel Potani
- The Childhood Acute Illness and Nutrition (CHAIN) Network, Nairobi, Kenya
- Division of Paediatric Gastroenterology, Hepatology and Nutrition, The Hospital for Sick Children, Toronto, Canada
- Centre for Global Child Health, Hospital for Sick Children, Toronto, Canada
| | - Wieger Voskuijl
- The Childhood Acute Illness and Nutrition (CHAIN) Network, Nairobi, Kenya
- Department of Paediatrics, Amsterdam Centre for Global Child Health, Emma Children's Hospital, Amsterdam UMC, University of Amsterdam, Amsterdam, The Netherlands
| | - Tahmeed Ahmed
- The Childhood Acute Illness and Nutrition (CHAIN) Network, Nairobi, Kenya
- Nutrition Research Division (NRD), International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b), Dhaka, Bangladesh
- Office of Executive Director, International Centre for Diarrhoeal Disease Research, Bangladesh (icddr, b), Dhaka, Bangladesh
| | - Mohammod Jobayer Chisti
- The Childhood Acute Illness and Nutrition (CHAIN) Network, Nairobi, Kenya
- Nutrition Research Division (NRD), International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b), Dhaka, Bangladesh
| | - Robert H J Bandsma
- The Childhood Acute Illness and Nutrition (CHAIN) Network, Nairobi, Kenya.
- Translational Medicine, Hospital for Sick Children, Toronto, Canada.
- Centre for Global Child Health, Hospital for Sick Children, Toronto, Canada.
- Department of Biomedical Sciences, Kamuzu University of Health Sciences, Blantyre, Malawi.
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Islam Z, Toker M, Gandhi IM, Sher A, Campton K. Improvement of Recalcitrant Dissecting Cellulitis of the Scalp After a Trial of Upadacitinib. Cureus 2024; 16:e52377. [PMID: 38361718 PMCID: PMC10868624 DOI: 10.7759/cureus.52377] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/16/2024] [Indexed: 02/17/2024] Open
Abstract
Dissecting cellulitis of the scalp (DCS) is a rare condition characterized by painful inflammatory nodules and abscesses on the scalp, often leading to sinus tracts and scarring alopecia. We present a case of DCS in a 26-year-old male who experienced significant clinical improvement following a short course of upadacitinib, a Janus kinase (JAK) inhibitor. The patient received multiple standard treatments such as topical antimicrobials, oral antibiotics, corticosteroids, and intralesional triamcinolone injections, with limited success. However, following the initiation of upadacitinib, the patient reported reduced pain, pustular draining, and bleeding, with significantly improved quality of life. To our knowledge, there is currently a paucity of literature documenting the use of JAK inhibitors for DCS. This case aims to highlight the potential of JAK inhibitors as a therapy for refractory DCS, a condition with limited treatment options.
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Affiliation(s)
- Zahidul Islam
- Division of Dermatology, Albert Einstein College of Medicine, Bronx, USA
| | - Michelle Toker
- Division of Dermatology, Albert Einstein College of Medicine, Bronx, USA
| | - Isha M Gandhi
- Dermatology, University of Minnesota Twin Cities Medical School, Minneapolis, USA
| | - Ariel Sher
- Dermatology, New York Medical College, Valhalla, USA
| | - Kristina Campton
- Division of Dermatology, Albert Einstein College of Medicine, Bronx, USA
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Islam MS, Islam Z, Jamal AHMSIM, Momtaz N, Beauty SA. Removal efficiencies of microplastics of the three largest drinking water treatment plants in Bangladesh. Sci Total Environ 2023; 895:165155. [PMID: 37379932 DOI: 10.1016/j.scitotenv.2023.165155] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Revised: 06/15/2023] [Accepted: 06/25/2023] [Indexed: 06/30/2023]
Abstract
Drinking water treatment plants (DWTPs) are intended to provide safe water to the municipality, typically by treating surface waters from rivers, lakes, and streams. Regrettably, all of these water sources for DWTPs have been reported to be contaminated by microplastics (MPs). Hence, there is an urgent need to investigate the removal efficiencies of MPs from raw waters in the conventional DWTPs anticipating public health concerns. In this experiment, MPs in the raw and treated waters of the three major DWTPs of Bangladesh, having different water treatment processes, were evaluated. The concentrations of MPs in the inlet points of Saidabad Water Treatment Plant phase-1 and 2 (SWTP-1 and SWTP-2), which share a similar water source of the Shitalakshya River, were 25.7 ± 9.8 and 26.01 ± 9.8 items L-1. The third plant, Padma Water Treatment Plant (PWTP) utilizes water from the Padma River and had an initial MP concentration of 6.2 ± 1.6 items L-1. The studied DWTPs, with their existing treatment processes, were found to reduce the MP loads substantially. The final MP concentrations in treated waters of SWTP-1, SWTP-2, and PWTP were 0.3 ± 0.03, 0.4 ± 0.01, and 0.05 ± 0.02 items L-1 with the removal efficiencies of 98.8, 98.5, and 99.2 %, respectively. The considered size range of MP was 20 μm to <5000. Fragments and fibers were the two predominant MP shapes. In terms of polymer, the MPs were polypropylene (PP, 48 %), polyethylene (PE, 35 %), polyethylene terephthalate (PET, 11 %), and polystyrene (PS, 6 %). The field emission scanning electron microscopy-energy dispersive X-ray spectroscopy (FESEM-EDX) revealed the fractured and rough surfaces of the remaining MPs, which were also found to be contaminated with heavy metals, like lead (Pb), cadmium (Cd), chromium (Cr), arsenic (As), copper (Cu), and zinc (Zn). Hence, additional initiatives are required to remove the residual MPs from the treated waters to safeguard the city dwellers from potential hazards.
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Affiliation(s)
- Muhammad Saiful Islam
- Fiber and Polymer Research Division, BCSIR Laboratories Dhaka, Bangladesh Council of Scientific and Industrial Research (BCSIR), Dhaka 1205, Bangladesh.
| | - Zahidul Islam
- Fiber and Polymer Research Division, BCSIR Laboratories Dhaka, Bangladesh Council of Scientific and Industrial Research (BCSIR), Dhaka 1205, Bangladesh
| | - A H M Shofiul Islam Molla Jamal
- Institute of National Analytical Research & Service (INARS), Bangladesh Council of Scientific and Industrial Research (BCSIR), Dhaka 1205, Bangladesh
| | - Nasima Momtaz
- Biological Research Division, BCSIR Laboratories Dhaka, Bangladesh Council of Scientific and Industrial Research (BCSIR), Dhaka 1205, Bangladesh
| | - Sadia Afrin Beauty
- Saidabad Water Treatment Plant, Dhaka Water Supply & Sewerage Authority, Dhaka 1204, Bangladesh
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Hossain S, Ahmad Shukri ZN, Waiho K, Ibrahim YS, Minhaz TM, Kamaruzzan AS, Abdul Rahim AI, Draman AS, Khatoon H, Islam Z, Kasan NA. Microplastics pollution in mud crab (Scylla sp.) aquaculture system: First investigation and evidence. Environ Pollut 2023; 329:121697. [PMID: 37088255 DOI: 10.1016/j.envpol.2023.121697] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2023] [Revised: 04/18/2023] [Accepted: 04/20/2023] [Indexed: 05/03/2023]
Abstract
Microplastics (MPs) occurrence in farmed aquatic organisms has already been the prime priority of researchers due to the food security concerns for human consumption. A number of commercially important aquaculture systems have already been investigated for MPs pollution but the mud crab (Scylla sp.) aquaculture system has not been investigated yet even though it is a highly demanded commercial species globally. This study reported the MPs pollution in the mud crab (Scylla sp.) aquaculture system for the first time. Three different stations of the selected aquafarm were sampled for water and sediment samples and MPs particles in the samples were isolated by the gravimetric analysis (0.9% w/v NaCl solution). MP abundance was visualized under a microscope along with their size, shape, and color. A subset of the isolated MPs was analyzed by scanning electron microscope (SEM), and Fourier transform infrared spectroscopy (FTIR) for the surface and chemical characterization respectively. The average MPs concentration was 47.5 ± 11.875 particles/g in sediment and 127.92 ± 14.99 particles/100 L in the water sample. Fibrous-shaped (72.17%) and transparent-colored (59.37%) MPs were dominant in all the collected samples. However, smaller MPs (>0.05-0.5 mm) were more common in the water samples (47.69%) and the larger (>1-5 mm) MPs were in the sediment samples (47.83%). SEM analysis found cracks and roughness on the surface of the MPs and nylon, polyethylene, polypropylene, and polystyrene MPs were identified by FTIR analysis. PLI value showed hazard level I in water and level II in sediment. The existence of deleterious MPs particles in the mud crab aquaculture system was well evident. The other commercial mud crab aquafarms must therefore be thoroughly investigated in order to include farmed mud crabs as an environmentally vulnerable food security concern.
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Affiliation(s)
- Shahadat Hossain
- Higher Institution Centre of Excellence (HICoE), Institute of Tropical Aquaculture and Fisheries, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia
| | - Zuhayra Nasrin Ahmad Shukri
- Higher Institution Centre of Excellence (HICoE), Institute of Tropical Aquaculture and Fisheries, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia
| | - Khor Waiho
- Higher Institution Centre of Excellence (HICoE), Institute of Tropical Aquaculture and Fisheries, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia
| | - Yusof Shuaib Ibrahim
- Microplastic Research Interest Group (MRIG), Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia
| | - Tashrif Mahmud Minhaz
- Freshwater Sub Station, Bangladesh Fisheries Research Institute, Saidpur, 5310, Nilphamari, Bangladesh
| | - Amyra Suryatie Kamaruzzan
- Higher Institution Centre of Excellence (HICoE), Institute of Tropical Aquaculture and Fisheries, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia
| | - Ahmad Ideris Abdul Rahim
- Higher Institution Centre of Excellence (HICoE), Institute of Tropical Aquaculture and Fisheries, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia
| | - Ahmad Shuhaimi Draman
- Higher Institution Centre of Excellence (HICoE), Institute of Tropical Aquaculture and Fisheries, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia
| | - Helena Khatoon
- Chattogram Veterinary and Animal Sciences University, Chattogram, 4225, Bangladesh
| | - Zahidul Islam
- Marine Fisheries and Technology Station, Bangladesh Fisheries Research Institute, Cox's Bazar Sadar, 4700, Cox's Bazar, Bangladesh
| | - Nor Azman Kasan
- Higher Institution Centre of Excellence (HICoE), Institute of Tropical Aquaculture and Fisheries, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia; Microplastic Research Interest Group (MRIG), Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia.
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Sobuj MKA, Mostofa MG, Islam Z, Rabby AF, Rahman T, Sonia SS, Hasan SJ, Rahman S. Floating raft culture of Gracilariopsis longissima for optimum biomass yield performance on the coast of Cox's Bazar, Bangladesh. Sci Rep 2023; 13:2308. [PMID: 36759631 PMCID: PMC9911781 DOI: 10.1038/s41598-023-28675-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Accepted: 01/23/2023] [Indexed: 02/11/2023] Open
Abstract
Seaweed cultivation is an eco-friendly method and attracts growing interest which needs a multi-criteria approach for its sustainability. In our present study, an economically significant red alga, Gracilariopsis longissima was cultured using a floating raft method on the coast of Cox's Bazar, Bangladesh for a period of 90 days from January to March 2022. The effects of different factors such as rope materials, culture type, raft shape, seeding intensity, harvesting phase and water depth on the biomass yield production of G. longissima were evaluated during a 90-day culture period. The biomass yield production and daily growth rate (DGR% day-1) were estimated to evaluate the possibilities of G. longissima cultures in a floating raft culture method. The range of biomass yield production (3.03-13.37 kg/m2) and DGR (3.08-4.72% day-1) is satisfactory in the floating raft culture method. Different water quality variables, the seasonal appearance of epiphytic algae and a cost-benefit analysis of seaweed culture were also performed. A total of eight epiphytic algal species were recorded, which resulted in major challenges for the growth of Gracilariopsis. The per month income for a seaweed farmer was estimated to be US$175.17 for 20 rafts. Our research concluded that farming of G. longissima in the floating raft method could be successfully performed from January to March on the coast of Cox's Bazar.
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Affiliation(s)
- Mohammad Khairul Alam Sobuj
- Marine Fisheries and Technology Station, Bangladesh Fisheries Research Institute, Cox's Bazar, 4700, Bangladesh.
| | - Md Golam Mostofa
- Marine Fisheries and Technology Station, Bangladesh Fisheries Research Institute, Cox's Bazar, 4700, Bangladesh
| | - Zahidul Islam
- Marine Fisheries and Technology Station, Bangladesh Fisheries Research Institute, Cox's Bazar, 4700, Bangladesh
| | - Ahmad Fazley Rabby
- Marine Fisheries and Technology Station, Bangladesh Fisheries Research Institute, Cox's Bazar, 4700, Bangladesh
| | - Turabur Rahman
- Marine Fisheries and Technology Station, Bangladesh Fisheries Research Institute, Cox's Bazar, 4700, Bangladesh
| | - Saima Sultana Sonia
- Marine Fisheries and Technology Station, Bangladesh Fisheries Research Institute, Cox's Bazar, 4700, Bangladesh
| | - Shanur Jahedul Hasan
- Marine Fisheries and Technology Station, Bangladesh Fisheries Research Institute, Cox's Bazar, 4700, Bangladesh
| | - Shafiqur Rahman
- Marine Fisheries and Technology Station, Bangladesh Fisheries Research Institute, Cox's Bazar, 4700, Bangladesh
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Islam MS, Hasan MR, Islam Z. Abundance, characteristics, and spatial-temporal distribution of microplastics in sea salts along the Cox's Bazar coastal area, Bangladesh. Environ Sci Pollut Res Int 2023; 30:19994-20005. [PMID: 36242671 DOI: 10.1007/s11356-022-23596-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2022] [Accepted: 10/09/2022] [Indexed: 06/16/2023]
Abstract
Microplastics (MPs), together with microfibers, have emerged as a contaminant of concern all around the globe. MPs have been detected in freshwater, seawater, sediment, and aquatic species among others. As suggested by several recent investigations, sea salts, a daily intake item by humans, are also contaminated by MPs. The current article describes MPs' occurrence, distribution, type, and timeline variation in raw sea salts from Cox's Bazar, Bangladesh. MPs have been detected in every collected salt sample, and quantity varied from 28.53 ± 2.43 to 93.53 ± 4.21 particles per kg, which was about 52.48 ± 1.72 to 67.46 ± 3.81 µg/kg of raw salt. Microfibers were MPs' dominant shape category, and the plastic types were mainly polyester or nylon. Other types of MPs were polyethylene (PE), polypropylene (PP), polycarbonate (PC), polyurethane (PU), and polystyrene (PS) in decreasing amounts. The majority of the MPs in the sea salts were in the size range of ˂ 3-1 mm. The total amount of MPs and plastic-type variation due to sampling location (p ˃ 0.05) and because of the time period (p ˃ 0.05) was found insignificant. Acetaldehyde, a volatile toxic substance produced by the degradation of polyester polymer chains, was detected in MPs in the range of 0.37 to 1.72 µg/g by headspace GC-MS analysis. Hence, the sea salts contaminated with MPs pose a public health hazard. Microplastics extraction from sea salts and their characterization.
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Affiliation(s)
- Muhammad Saiful Islam
- Fiber and Polymer Research Division, BCSIR Laboratories Dhaka, Bangladesh Council of Scientific and Industrial Research (BCSIR), Dhaka, 1205, Bangladesh.
| | - Md Rashed Hasan
- Fiber and Polymer Research Division, BCSIR Laboratories Dhaka, Bangladesh Council of Scientific and Industrial Research (BCSIR), Dhaka, 1205, Bangladesh
| | - Zahidul Islam
- Fiber and Polymer Research Division, BCSIR Laboratories Dhaka, Bangladesh Council of Scientific and Industrial Research (BCSIR), Dhaka, 1205, Bangladesh
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Hossain S, Manan H, Shukri ZNA, Othman R, Kamaruzzan AS, Rahim AIA, Khatoon H, Minhaz TM, Islam Z, Kasan NA. Microplastics biodegradation by biofloc-producing bacteria: An inventive biofloc technology approach. Microbiol Res 2023; 266:127239. [DOI: 10.1016/j.micres.2022.127239] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2022] [Revised: 08/21/2022] [Accepted: 10/12/2022] [Indexed: 11/06/2022]
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Islam MS, Islam Z, Hasan MR. Pervasiveness and characteristics of microplastics in surface water and sediment of the Buriganga River, Bangladesh. Chemosphere 2022; 307:135945. [PMID: 35944680 DOI: 10.1016/j.chemosphere.2022.135945] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2022] [Revised: 07/18/2022] [Accepted: 08/01/2022] [Indexed: 06/15/2023]
Abstract
Microplastics (MPs) are an emerging environmental problem due to their all-around existence and extraordinary stability. A significant number of studies are found in recent literature on the occurrence, distribution, transport, and fate of the MPs in several environmental compartments. In this study, we have investigated the occurrence and characteristics of MPs in the surface water and sediment of the Buriganga river, located beside the mega-city of Dhaka in Bangladesh. In the Buriganga river, the concentration of MPs in the surface water was found from 4.33 ± 0.58 to 43.67 ± 0.58 items L-1, and in the sediment, MPs varied from 17.33 ± 1.53 to 133.67 ± 5.51 items kg-1 of dry sediment. Fragment-type MPs were predominant in the surface water and sediment, which was 72.7% and 85.5% respectively. The most abundant polymer type polypropylene (PP) was found -to be 46% in the surface water and 61% in the sediment sample. The next major category, polyethylene (PE) was found to be 26% and 21%, respectively. Polystyrene (PS), polyvinyl chloride (PVC), polyethylene terephthalate (PET), and polyamide (PA) were other commonly detected polymer types. The MPs were found to be contaminated by Pb, Cd, Cr, Zn, Cu, and Sn from Energy dispersive-X-ray fluorescence (ED-XRF) analysis. Tannery-induced Cr was detected in the highest concentrations in the MPs, which were 20.67 ± 1.66 mg kg-1 (in surface water) and 14.2 ± 1.25 mg kg-1 (in sediment). The pollution load index (PLI) of the MPs contamination in different sampling sites along the Buriganga river was found in the risk level category of I and II. The anthropogenic influence of the city area was reflected in the PLI values, which had an increasing trend from the upstream sampling points (1.00 ± 1.00, 1.00 ± 1.00) to the downstream sites (10.09 ± 1.00, 7.71 ± 3.60).
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Affiliation(s)
- Muhammad Saiful Islam
- Fiber and Polymer Research Division, BCSIR Laboratories Dhaka, Bangladesh Council of Scientific and Industrial Research, Dhaka, 1205, Bangladesh.
| | - Zahidul Islam
- Fiber and Polymer Research Division, BCSIR Laboratories Dhaka, Bangladesh Council of Scientific and Industrial Research, Dhaka, 1205, Bangladesh
| | - Md Rashed Hasan
- Fiber and Polymer Research Division, BCSIR Laboratories Dhaka, Bangladesh Council of Scientific and Industrial Research, Dhaka, 1205, Bangladesh
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Moni R, Noman Khan AA, Islam Z, Zohora US, Rahman MS. Biofilm Fermentation: A Propitious Method for the Production of Protease Enzyme by Bacillus subtilis RB14. Ind Biotechnol (New Rochelle N Y) 2022. [DOI: 10.1089/ind.2021.0016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Affiliation(s)
- Ripa Moni
- Department of Biotechnology and Genetic Engineering, Faculty of Biological Sciences, Jahangirnagar University, Savar, Dhaka, Bangladesh
| | - Abdullah Al Noman Khan
- Department of Biotechnology and Genetic Engineering, Faculty of Biological Sciences, Jahangirnagar University, Savar, Dhaka, Bangladesh
| | - Zahidul Islam
- Department of Biotechnology and Genetic Engineering, Faculty of Biological Sciences, Jahangirnagar University, Savar, Dhaka, Bangladesh
| | - Umme Salma Zohora
- Department of Biotechnology and Genetic Engineering, Faculty of Biological Sciences, Jahangirnagar University, Savar, Dhaka, Bangladesh
| | - Mohammad Shahedur Rahman
- Department of Biotechnology and Genetic Engineering, Faculty of Biological Sciences, Jahangirnagar University, Savar, Dhaka, Bangladesh
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Saha M, Sikder P, Saha A, Shah S, Sultana S, Emran T, Banik A, Islam Z, Islam MS, Sharker SM, Reza HM. QbD Approach towards Robust Design Space for Flutamide/PiperineSelf-Emulsifying Drug Delivery System with Reduced Liver Injury. AAPS PharmSciTech 2022; 23:62. [PMID: 35080685 DOI: 10.1208/s12249-022-02213-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2021] [Accepted: 01/03/2022] [Indexed: 02/08/2023] Open
Abstract
Flutamide which is used to treat prostate cancer and other diseases induces liver damage during and after the therapy. The aim of this study was to develop a flutamide/piperineco-loaded self-emulsifying drug delivery system (FPSEDDS) to inhibit flutamide-induced liver injury by utilizing piperine as a metabolic inhibitor. The development of SEDDS was carried out following a quality by design (QbD) approach. The risk assessment study was performed to identify critical quality attributes (CQAs) and critical material attributes (CMAs)/critical process parameters (CPPs). I-optimal mixture design was executed with three CMAs as the independent variables and CQAs as the dependable variables. The effectiveness of optimized SEDDS to circumvent flutamide-induced hepatotoxicity was assessed in mice. The numerical optimization suggested an optimal formulation with a desirability value of 0.621, using CQAs targets as optimization goals with 95% prediction intervals (α = 0.05). The optimal formulation exhibited the grade A SEDDS characteristics with the guarantee of high payloads in self-formed oily droplets. The design space was also obtained from the same optimization goals. All CQA responses of verification points were found within the 95% prediction intervals of the polynomial models, indicating a good agreement between actual versus predicted responses within the design space. These obtained responses also passed CQAs acceptance criteria. Finally, hematoxylin-eosin staining revealed the minimal flutamide-induced hepatotoxicity from the optimal SEDDS formulation as compared to the control and flutamide/piperine normal suspension. We demonstrate that the piperine containing optimized SEDDS formulation developed by QbD significantly reduces the flutamide-induced liver injury in mice.
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12
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Islam Z, Rahman M, Olive AH, Hasan MK. Prevalence rate of attention deficit hyperactivity disorder (ADHD) and computer vision syndrome (CVS) symptoms predisposition among digital device users of Bangladesh. Middle East Curr Psychiatry 2022. [PMCID: PMC8786446 DOI: 10.1186/s43045-022-00176-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
Abstract
Background
Around 5.29% of the world population is suffering from ADHD, and 60 million people are suffering from CVS, with an increasing rate of prevalence of these disorders. This study aimed to determine the prevalence rate of ADHD and CVS symptoms among the Bangladeshi population.
Results
To assess the aim of the study, a cross-sectional survey was conducted online through stratified sampling, and 197 responses were collected from the participants. Our survey method follows these criteria where the ARSV1.1 standard questionnaire was followed for the ADHD questionnaire, and a self-administered questionnaire was established based on the symptoms of CVS. The male age ranges from 18–24 have the highest value of ADHD (34%) coincided with > 6 h digital device usage (51%), and the Stroop effect is significantly correlated with the ADHD score (0.498, p < 0.01). The Stroop effect value is also higher among the males aged 18–24, digital device users for > 6 h (48%).
Conclusions
With the advent of science, it is impossible to avoid digital devices as necessary. Notwithstanding, safe and appropriate use of digital media is a must for healthy living.
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Salas M, Mordin M, Castro C, Islam Z, Tu N, Hackshaw MD. Health-related quality of life in women with breast cancer: a review of measures. BMC Cancer 2022; 22:66. [PMID: 35033009 PMCID: PMC8760726 DOI: 10.1186/s12885-021-09157-w] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2021] [Accepted: 12/24/2021] [Indexed: 12/24/2022] Open
Abstract
BACKGROUND To identify and describe the breast cancer-specific health-related quality of life (HRQoL) instruments with evidence of validation in the breast cancer population for potential use in patients treated for breast cancer (excluding surgery). METHODS We conducted a systematic literature review using PubMed, Embase, and PsycINFO databases to identify articles that contain psychometric properties of HRQoL instruments used in patients with breast cancer. Relevant literature from January 1, 2009, to August 19, 2019, was searched. Articles published in English that reported psychometric properties (reliability, validity) of HRQoL instruments were identified. RESULTS The database search yielded 613 unique records; 131 full-text articles were reviewed; 80 articles presented psychometric data for instruments used in breast cancer (including generic measures). This article reviews the 33 full articles describing psychometric properties of breast cancer-specific HRQoL instruments: EORTC QLQ-C30, EORTC QLQ-BR23, FACT-B, FBSI, NFBSI-16, YW-BCI36, BCSS, QuEST-Br, QLICP-BR, INA-BCHRQoL, and two newly developed unnamed measures, one by Deshpande and colleagues (for use in India) and one by Vanlemmens and colleagues (for use among young women and their partners). The articles that described the EORTC QLQ-C30, QLQ-BR23, and FACT-B centered on validating translations, providing additional support for content validity, and demonstrating acceptability of electronic patient-reported outcome administration. Psychometric properties of the measures were acceptable. Several new measures have been developed in Asia with an emphasis on development on cultural relevance/sensitivity. Others focused on specific populations (i.e., young women with breast cancer). CONCLUSIONS Historically, there have been limited options for validated measures to assess HRQoL of patients with breast cancer. A number of new measures have been developed and validated, offering promising options for assessing HRQoL in this patient population. This review supports the reliability and validity of the EORTC QLQ-C30 and FACT-B; new translations and electronic versions of these measures further support their use for this population.
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Affiliation(s)
- Maribel Salas
- Epidemiology, Clinical Safety and Pharmacovigilance, Daiichi Sankyo, Inc., 211 Mount Airy Road, 1A-453, Basking Ridge, NJ, 07920, USA.
- CCEB/CPeRT, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
| | | | | | - Zahidul Islam
- Epidemiology, Clinical Safety and Pharmacovigilance, Daiichi Sankyo, Inc., 211 Mount Airy Road, 1A-453, Basking Ridge, NJ, 07920, USA
| | - Nora Tu
- Epidemiology, Clinical Safety and Pharmacovigilance, Daiichi Sankyo, Inc., 211 Mount Airy Road, 1A-453, Basking Ridge, NJ, 07920, USA
| | - Michelle D Hackshaw
- Epidemiology, Clinical Safety and Pharmacovigilance, Daiichi Sankyo, Inc., 211 Mount Airy Road, 1A-453, Basking Ridge, NJ, 07920, USA
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14
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Khatoon H, Penz Penz K, Banerjee S, Redwanur Rahman M, Mahmud Minhaz T, Islam Z, Ara Mukta F, Nayma Z, Sultana R, Islam Amira K. Immobilized Tetraselmis sp. for reducing nitrogenous and phosphorous compounds from aquaculture wastewater. Bioresour Technol 2021; 338:125529. [PMID: 34265592 DOI: 10.1016/j.biortech.2021.125529] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2021] [Revised: 07/04/2021] [Accepted: 07/06/2021] [Indexed: 06/13/2023]
Abstract
Removal of nitrogenous and phosphorus compounds from aquaculture wastewater by green microalgae (Tetraselmis sp.) was investigated using a novel method of algal cell immobilization. Immobilized microalgae removed nitrogenous and phosphorous compounds efficiently from aquaculture wastewater. Results showed that Tetraselmis beads reduced significantly (p < 0.05) the total ammonia nitrogen, nitrite nitrogen and soluble reactive phosphorous concentration (0.08; 0.10 and 0.17 mg/L, respectively) from the initial concentration of 7.7, 3.1 and 2.0 mg/L respectively within 48 h compared to other treatments. Removal rate of total ammonia nitrogen, nitrite nitrogen and soluble reactive phosphorous were 99.2, 99.2 and 94.3% respectively, for the artificial wastewater within 24 h. For the shrimp pond wastewater, total ammonia nitrogen, nitrite nitrogen and soluble reactive phosphorous were reduced 98.9, 97.7 and 91.1% respectively within 48 h. It is concluded that Tetraselmis sp. beads is an effective means to reduce nitrogen and phosphorus levels in aquaculture wastewater.
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Affiliation(s)
- Helena Khatoon
- Department of Aquaculture, Faculty of Fisheries, Chattogram Veterinary and Animal Sciences University, Bangladesh
| | - Kwan Penz Penz
- Institute of Bioscience, Universiti Putra Malaysia, Malaysia
| | - Sanjoy Banerjee
- Institute of Bioscience, Universiti Putra Malaysia, Malaysia
| | - Mohammad Redwanur Rahman
- Department of Aquaculture, Faculty of Fisheries, Chattogram Veterinary and Animal Sciences University, Bangladesh
| | - Tashrif Mahmud Minhaz
- Department of Aquaculture, Faculty of Fisheries, Chattogram Veterinary and Animal Sciences University, Bangladesh
| | - Zahidul Islam
- Department of Aquaculture, Faculty of Fisheries, Chattogram Veterinary and Animal Sciences University, Bangladesh
| | - Fardous Ara Mukta
- Department of Aquaculture, Faculty of Fisheries, Chattogram Veterinary and Animal Sciences University, Bangladesh
| | - Zannatul Nayma
- Department of Aquaculture, Faculty of Fisheries, Chattogram Veterinary and Animal Sciences University, Bangladesh
| | - Razia Sultana
- Department of Aquaculture, Faculty of Fisheries, Chattogram Veterinary and Animal Sciences University, Bangladesh
| | - Kafia Islam Amira
- Department of Aquaculture, Faculty of Fisheries, Chattogram Veterinary and Animal Sciences University, Bangladesh
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15
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Hackshaw MD, Danysh HE, Henderson M, Wang E, Tu N, Islam Z, Ladner A, Ritchey ME, Salas M. Prognostic factors of brain metastasis and survival among HER2-positive metastatic breast cancer patients: a systematic literature review. BMC Cancer 2021; 21:967. [PMID: 34454469 PMCID: PMC8403419 DOI: 10.1186/s12885-021-08708-5] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2020] [Accepted: 08/02/2021] [Indexed: 03/15/2023] Open
Abstract
BACKGROUND Patients with breast cancer who overexpress the human epidermal growth factor receptor 2 (HER2) and subsequently develop brain metastasis (BM) typically experience poor quality of life and low survival. We conducted a comprehensive literature review to identify prognostic factors for BM and predictors of survival after developing BM, and the effects of therapies with different mechanisms of action among patients with HER2+ breast cancer (BC). METHODS A prespecified search strategy was used to identify research studies investigating BM in patients with HER2+ BC published in English during January 1, 2009-to June 25, 2021. Articles were screened using a two-phase process, and data from selected articles were extracted. RESULTS We identified 25 published articles including 4097 patients with HER2+ BC and BM. Prognostic factors associated with shorter time to BM diagnosis after initial BC diagnosis included younger age, hormone receptor negative status, larger tumor size or higher tumor grade, and lack of treatment with anti-HER2 therapy. Factors predictive of longer survival after BM included having fewer brain lesions (< 3 or a single lesion) and receipt of any treatment after BM, including radiosurgery, neurosurgery and/or systemic therapy. Patients receiving combination trastuzumab and lapatinib therapy or trastuzumab and pertuzumab therapy had the longest median survival compared with other therapies assessed in this review. CONCLUSIONS More research is needed to better understand risk factors for BM and survival after BM in the context of HER2+ BC, as well as the assessment of new anti-HER2 therapy regimens that may provide additional therapeutic options for BM in these patients.
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Affiliation(s)
| | - Heather E Danysh
- Department of Epidemiology, RTI Health Solutions, Waltham, MA, USA
| | - Mackenzie Henderson
- Global Epidemiology Department, Daiichi Sankyo, Inc., 211 Mt. Airy Road, Basking Ridge, NJ, 07920, USA
| | - Eric Wang
- Global Epidemiology Department, Daiichi Sankyo, Inc., 211 Mt. Airy Road, Basking Ridge, NJ, 07920, USA.,Rutgers Institute for Pharmaceutical Industry Fellowships, Piscataway, NJ, USA
| | - Nora Tu
- Global Epidemiology Department, Daiichi Sankyo, Inc., 211 Mt. Airy Road, Basking Ridge, NJ, 07920, USA
| | - Zahidul Islam
- Global Epidemiology Department, Daiichi Sankyo, Inc., 211 Mt. Airy Road, Basking Ridge, NJ, 07920, USA
| | - Amy Ladner
- Department of Epidemiology, RTI Health Solutions, Research Triangle Park, NC, USA
| | - Mary E Ritchey
- Department of Epidemiology, RTI Health Solutions, Research Triangle Park, NC, USA
| | - Maribel Salas
- Global Epidemiology Department, Daiichi Sankyo, Inc., 211 Mt. Airy Road, Basking Ridge, NJ, 07920, USA. .,CCEB/CPeRT, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
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16
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Salas M, Henderson M, Sundararajan M, Tu N, Islam Z, Ebeid M, Horne L. Use of comorbidity indices in patients with any cancer, breast cancer, and human epidermal growth factor receptor-2-positive breast cancer: A systematic review. PLoS One 2021; 16:e0252925. [PMID: 34143813 PMCID: PMC8213062 DOI: 10.1371/journal.pone.0252925] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2020] [Accepted: 05/25/2021] [Indexed: 11/18/2022] Open
Abstract
Objective To identify comorbidity indices that have been validated in cancer populations, with a focus on breast cancer and human epidermal growth factor receptor-2-positive (HER2+) breast cancer. Study design and setting A systematic review of the literature on the use of comorbidity indices in any cancer, breast cancer, and HER2+ breast cancer using Ovid and PubMed. Results The final data set comprised 252 articles (252 any cancer, 39 breast cancer, 7 HER2+ breast cancer). The most common cancers assessed were hematologic and breast, and the most common comorbidity index used was the Charlson Comorbidity Index (CCI) or a CCI derivative. Most validity testing of comorbidity indices used predictive validity based on survival outcomes. Hazard ratios for survival outcomes generally found that a higher comorbidity burden (measured by CCI) increased mortality risk in patients with breast cancer. All breast-cancer studies that validated comorbidity indices used CCI-based indices. Only one article validated a comorbidity index in HER2+ breast cancer. Conclusion CCI-based indices are the most appropriate indices to use in the general breast-cancer population. There is insufficient validation of any comorbidity index in HER2+ breast cancer to provide a recommendation, indicating a future need to validate these instruments in this population.
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Affiliation(s)
- Maribel Salas
- Global Epidemiology, Clinical Safety and Pharmacovigilance, Daiichi Sankyo Inc., Basking Ridge, NJ, United States of America
- Center for Clinical Epidemiology and Biostatistics (CCEB)/Center for Pharmacoepidemiology Research and Training (CPeRT), University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, United States of America
- * E-mail:
| | - Mackenzie Henderson
- Global Epidemiology, Clinical Safety and Pharmacovigilance, Daiichi Sankyo Inc., Basking Ridge, NJ, United States of America
- Rutgers Institute for Pharmaceutical Industry Fellowships, Rutgers University, New Brunswick, NJ, United States of America
| | - Meera Sundararajan
- Global Epidemiology, Clinical Safety and Pharmacovigilance, Daiichi Sankyo Inc., Basking Ridge, NJ, United States of America
| | - Nora Tu
- Global Epidemiology, Clinical Safety and Pharmacovigilance, Daiichi Sankyo Inc., Basking Ridge, NJ, United States of America
| | - Zahidul Islam
- Global Epidemiology, Clinical Safety and Pharmacovigilance, Daiichi Sankyo Inc., Basking Ridge, NJ, United States of America
| | - Mina Ebeid
- Clinical Safety and Pharmacovigilance, Daiichi Sankyo Inc., Basking Ridge, NJ, United States of America
| | - Laura Horne
- Global Epidemiology, Clinical Safety and Pharmacovigilance, Daiichi Sankyo Inc., Basking Ridge, NJ, United States of America
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17
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Islam Z, Khatoon H, Minhaz TM, Rahman MR, Hasan S, Mahmud Y, Hossain MS, Sarker J. Data on growth, productivity, pigments and proximate composition of indigenous marine microalgae isolated from Cox's Bazar Coast. Data Brief 2021; 35:106860. [PMID: 33665256 PMCID: PMC7903300 DOI: 10.1016/j.dib.2021.106860] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2021] [Revised: 02/04/2021] [Accepted: 02/08/2021] [Indexed: 11/30/2022] Open
Abstract
Data on growth, productivity, pigments and proximate composition of the four different indigenous marine microalgae (isolated from Cox's Bazar Coast) were collected to compare the growth performance, pigments and nutritional composition. Chlorella sp., Nannochloropsis sp., Tetraselmis sp. and Chaetoceros sp. are the four different marine microalgae. Growth curve was determined as the prerequisite to identify the stationary phase for each of the isolated microalgae. Data on growth curves were collected in terms of cell density and optical density to observe the growth rates and division per day. Isolated species were mass cultured in commercial culture medium. When the culture reached at stationary phase, microalgae were extracted to determine productivity, pigments, and proximate composition. The data of productivity (volumetric, areal and lipid productivity), pigments (Chlorophyll a, b, c, carotenoids, and phycobiliproteins), and proximate composition (protein, lipid, and carbohydrate) were significantly (p < 0.05) different among the four different microalgae. Therefore, this data will contribute to the selection of potential microalgae species through proper characterization for vast industrializations.
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Affiliation(s)
- Zahidul Islam
- Department of Aquaculture, Chattogram Veterinary and Animal Sciences University, Chattogram 4225, Bangladesh
| | - Helena Khatoon
- Department of Aquaculture, Chattogram Veterinary and Animal Sciences University, Chattogram 4225, Bangladesh
| | - Tashrif Mahmud Minhaz
- Department of Aquaculture, Chattogram Veterinary and Animal Sciences University, Chattogram 4225, Bangladesh
| | - Mohammad Redwanur Rahman
- Department of Aquaculture, Chattogram Veterinary and Animal Sciences University, Chattogram 4225, Bangladesh
| | - Shanur Hasan
- Bangladesh Fisheries Research Institute, Mymensingh 2201, Bangladesh
| | - Yahia Mahmud
- Bangladesh Fisheries Research Institute, Mymensingh 2201, Bangladesh
| | - Md Shahadat Hossain
- Department of Aquaculture, Chattogram Veterinary and Animal Sciences University, Chattogram 4225, Bangladesh
| | - Joyshri Sarker
- Department of Aquaculture, Chattogram Veterinary and Animal Sciences University, Chattogram 4225, Bangladesh
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18
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Salas M, Julian M, Drogaris L, Islam Z, Henderson M, Stemhagen A, O'Donnell N, Tu N. A qualitative evaluation of patient and healthcare provider knowledge, attitudes, and behavior for safety and use of pexidartinib. J Comp Eff Res 2021; 10:187-192. [PMID: 33474977 DOI: 10.2217/cer-2020-0147] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Aim: Pexidartinib is approved in the USA for the treatment of symptomatic tenosynovial giant cell tumor associated with severe morbidity or functional limitations and not amenable to improvement with surgery. Due to risk of serious liver injury, a survey of patient and healthcare provider (HCP) knowledge, attitudes, and behavior (KAB) of the risks was required. Materials & methods: Prior to KAB survey execution, structured telephone interviews with 12 patients and 12 HCPs were conducted. Results: The interviews revealed that patients had difficulty with the complexity and wordiness of some of the questions, while HCPs noted that some questions were repetitive with terminology that was not self-explanatory. Of the 15 questions initially in the patient survey, nine were modified for survey inclusion. For the HCP survey, 10 of 18 questions were modified. Conclusion: Qualitative research prior to KAB surveys is recommended to improve comprehension and data quality.
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Affiliation(s)
- Maribel Salas
- Daiichi Sankyo, Inc., 211 Mount Airy Dr., Basking Ridge, NJ 07920, USA.,CCEB/CPeRT, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104, USA
| | | | - Leonidas Drogaris
- Daiichi Sankyo, Inc., 211 Mount Airy Dr., Basking Ridge, NJ 07920, USA
| | - Zahidul Islam
- Daiichi Sankyo, Inc., 211 Mount Airy Dr., Basking Ridge, NJ 07920, USA
| | | | | | | | - Nora Tu
- Daiichi Sankyo, Inc., 211 Mount Airy Dr., Basking Ridge, NJ 07920, USA
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Islam Z, Papri N, Jahan I, Hasan M, Afsar M, Biswas N, Mohammad Q, Islam B, Sejvar J. Clinical epidemiology of acute transverse myelitis in Bangladesh: A prospective case control study. Int J Infect Dis 2020. [DOI: 10.1016/j.ijid.2020.11.109] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
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20
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Shahrin L, Chisti MJ, Brintz B, Islam Z, Shahid ASMSB, Hassan MZ, Leung DT, Chowdhury F. Clinical and laboratory predictors of 30-day mortality in severe acute malnourished children with severe pneumonia. Trop Med Int Health 2020; 25:1422-1430. [PMID: 32985047 DOI: 10.1111/tmi.13484] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
OBJECTIVE To determine the predictors of mortality within 30 days of hospital admission in a diarrhoeal disease hospital in Bangladesh. METHODS Cohort study of hospitalised children aged 0-59 months with severe acute malnutrition (SAM) and severe pneumonia in Dhaka Hospital, icddr,b, Bangladesh from April 2015 to March 2017. Those discharged were followed up, and survival status at 30 days from admission was determined. Children who died were compared with the survivors in terms of clinical and laboratory biomarkers. Multivariable logistic regression analysis was used for calculating adjusted odds ratio for death within 30 days of hospital admission. RESULTS We enrolled 191 children. Mortality within 30 days of admission was 6% (14/191). After adjusting for potential confounders (hypoxia, CRP and haematocrit) in logistic regression analysis, independent factors associated with death were female sex (aOR = 5.80, 95% CI: 1.34-25.19), LAZ <-4 (aOR = 6.51, 95% CI: 1.49-28.44) and Polymorphonuclear Leucocytes (PMNL) (>6.0 × 109 /L) (aOR = 1.06, 95% CI: 1.01-1.11). Using sex, Z-score for length for age (LAZ), and PMNL percentage, we used random forest and linear regression models to achieve a cross-validated AUC of 0.83 (95% CI: 0.82, 0.84) for prediction of 30-day mortality. CONCLUSIONS The results of our data suggest that female sex, severe malnutrition (<-4 LAZ) and higher PMNL percentage were prone to be associated with 30-day mortality in children with severe pneumonia. Association of these factors may be used in clinical decision support for prompt identification and appropriate management for prevention of mortality in this population.
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Affiliation(s)
- Lubaba Shahrin
- International Centre for Diarrheal Disease Research, Bangladesh, Dhaka, Bangladesh
| | - Mohammod J Chisti
- International Centre for Diarrheal Disease Research, Bangladesh, Dhaka, Bangladesh
| | - Benjamin Brintz
- Division of Infectious Diseases, University of Utah School of Medicine, Salt Lake City, UT, USA
| | - Zahidul Islam
- International Centre for Diarrheal Disease Research, Bangladesh, Dhaka, Bangladesh
| | - Abu S M S B Shahid
- International Centre for Diarrheal Disease Research, Bangladesh, Dhaka, Bangladesh
| | - Md Zakiul Hassan
- International Centre for Diarrheal Disease Research, Bangladesh, Dhaka, Bangladesh
| | - Daniel T Leung
- Division of Infectious Diseases, University of Utah School of Medicine, Salt Lake City, UT, USA
| | - Fahmida Chowdhury
- International Centre for Diarrheal Disease Research, Bangladesh, Dhaka, Bangladesh
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Geliukh E, Tabunshchyk V, Kamenska N, Islam Z. Using patient–centered approach for improving adherence to treatment in DS/DR–TB patients in Ukraine. Eur J Public Health 2020. [DOI: 10.1093/eurpub/ckaa165.404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Abstract
Issue/problem
Ukraine is among 30 high MDR-TB burden countries with about 6500 laboratory confirmed MDR-TB cases annually. Ukraine provides full coverage for first- and second-line TB drugs from the state budget. Nevertheless, successful treatment outcomes are one of the lowest in EECA region - 49% in MDR/RR-TB cases and 37% in XDR-TB. High rates of lost to follow-up (15.8%), treatment failed (18%) and died (15.9%) among MDR-TB cases contribute to unsuccessful treatment outcomes.
Description of the problem
A new intervention was introduced aimed at improving patients' adherence to treatment. Medical-psycho-social services (MPSS) provision based on patient-centered approach is provided to all patients. In 2018, project funded by GFATM was launched in 8 oblasts of Ukraine. All patients are assessed on treatment adherence before discharge from hospitals. Those with low adherence are referred to NGOs. MPSS starts from the patient's needs assessment followed by development of individual plan of support. MPSS is provided during the whole period of outpatient treatment and may include DOT/VOT, social workers' permanent support, food kits, psychologist counselling, transport and/or cell reimbursement, housing, documents restore, legal services and other services as per patients' needs. Electronic depersonalized database SyrEx is used for the project related notes.
Results
Total amount of TB/DR-TB patients treated in 2018-2019 is 8640 and 4246 accordingly. Cohort analysis is used for treatment outcomes assessment.
Intervention allowed reducing the number of patients lost to follow up in DS/DR-TB (to 1.2% and 2.5% accordingly), treatment failed (to 5.4% and 10.9%) and number of died (to 2.1% and 3.2%)
Lessons
MPSS based on patient-centered approach improved successful treatment outcomes: to 91% in DS-TB patients and 82.3% in DR-TB. Further initiative scale-up is required as well as transition of MPSS services from donor funding to domestic.
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Affiliation(s)
- E Geliukh
- ICF, Alliance for Public Health, Kyiv, Ukraine
| | | | - N Kamenska
- ICF, Alliance for Public Health, Kyiv, Ukraine
| | - Z Islam
- ICF, Alliance for Public Health, Kyiv, Ukraine
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Dobriyal N, Sagarika P, Shrivastava A, Verma AK, Islam Z, Gupta P, Mochizuki T, Abe F, Sahi C. Over-expression of Caj1, a plasma membrane associated J-domain protein in Saccharomyces cerevisiae, stabilizes amino acid permeases. Biochim Biophys Acta Biomembr 2020; 1862:183435. [PMID: 32777224 DOI: 10.1016/j.bbamem.2020.183435] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2019] [Revised: 07/08/2020] [Accepted: 07/27/2020] [Indexed: 11/17/2022]
Abstract
Hsp70: J-domain protein (JDP) machines, along with the cellular protein degradation systems play a central role in regulating cellular proteostasis. An equally robust surveillance system operates at the plasma membrane too that affects proper sorting, stability as well as the turnover of membrane proteins. Although plausible, a definitive role of the Hsp70: JDP machine in regulating the stability of plasma membrane proteins is not well understood in Saccharomyces cerevisiae. Here we show that a moderate over-expression of Caj1, one of the thirteen JDPs residing in the nucleo-cytosolic compartment of S. cerevisiae reduced the cold sensitivity of tryptophan auxotrophic yeast cells by stabilizing tryptophan permeases, Tat1 and Tat2 in a J-domain dependent manner. Concomitantly, higher Caj1 levels also caused slow growth and increased plasma membrane damage at elevated temperatures possibly due to the stabilization of thermolabile plasma membrane proteins. Finally, we show that although majorly cytosolic, Caj1 also co-localizes with the membrane dye FM4-64 at the cellular periphery suggesting that Caj1 might interact with the plasma membrane. Based on the results presented in this study, we implicate the Hsp70: Caj1 chaperone machine in regulating the stability or turnover of plasma membrane proteins in budding yeast.
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Affiliation(s)
- N Dobriyal
- Department of Biological Sciences, Indian Institute of Science Education and Research Bhopal, Madhya Pradesh, India
| | - P Sagarika
- Department of Biological Sciences, Indian Institute of Science Education and Research Bhopal, Madhya Pradesh, India
| | - A Shrivastava
- Department of Biological Sciences, Indian Institute of Science Education and Research Bhopal, Madhya Pradesh, India
| | - A K Verma
- Department of Biological Sciences, Indian Institute of Science Education and Research Bhopal, Madhya Pradesh, India
| | - Z Islam
- Department of Biological Sciences, Indian Institute of Science Education and Research Bhopal, Madhya Pradesh, India
| | - P Gupta
- Department of Biological Sciences, Indian Institute of Science Education and Research Bhopal, Madhya Pradesh, India
| | - T Mochizuki
- Molecular Genetic Research, Department of Chemistry and Biological Science, College of Science and Engineering, Aoyama Gakuin University, 5-10-1 Fuchinobe, Chuo-ku, Sagamihara 252-5258, Japan
| | - F Abe
- Molecular Genetic Research, Department of Chemistry and Biological Science, College of Science and Engineering, Aoyama Gakuin University, 5-10-1 Fuchinobe, Chuo-ku, Sagamihara 252-5258, Japan
| | - C Sahi
- Department of Biological Sciences, Indian Institute of Science Education and Research Bhopal, Madhya Pradesh, India.
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23
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Salas M, Henderson M, Wientzek-Fleischmann A, Islam Z, Tu N, Bilitou A, Elsharkawy M, Stellmacher U. Validated Instruments of Quality of Life (QOL) in Patients With Acute Myeloid Leukemia (AML) and Other Cancers. Front Pharmacol 2020; 11:1109. [PMID: 32792948 PMCID: PMC7394002 DOI: 10.3389/fphar.2020.01109] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Accepted: 07/08/2020] [Indexed: 11/26/2022] Open
Abstract
Introduction Acute myeloid leukemia (AML) can negatively impact quality of life (QOL). Few QOL instruments are specific to and have been validated in AML. This review aims to identify QOL instruments that have been validated in patients with AML and other cancers and summarize their psychometric properties reported in published literature. A literature review search was performed using PubMed and OVID (Biosis, Embase, MEDLINE) databases through June 25, 2020. Search terms included: QOL, health-related QOL, patient-reported outcomes and validity, reliability, validated, tools, instruments, test-retest, and leukemia myeloid acute, leukemia, myeloid, acute, acute myeloid leukemia. Articles were included if they focused on cancer and reported psychometric properties that could be extracted. Abstracts and their references were reviewed for inclusion. Results Twelve evaluating ten instruments were included. Functional Assessment of Cancer Therapy Leukemia (FACT-Leu) showed internal consistency (IC) of α = 0.86 to >0.9, correlation with EQ-5D-3L of r > 0.50, correlation with European Organisation for Research and Treatment of Cancer (EORTC) QLQ-Leu of ρ = 0.29–0.63, test-retest reliability of κ = 0.861. FACT-F showed correlations with EORTC QLQ-C30 of r = 0.40–0.83. Hematological Malignancy Patient-Reported Outcome (HM-PRO) showed intraclass correlation coefficient (ICC) of 0.94–0.98. EORTC-8D and EQ-5D-3L showed ICC = 0.595, correlations with each other of ρ = 0.137–0.634 and with EORTC QLQ-C30 of r = 0.651–0.917. EORTC QLQ-C30 showed person separation reliability of 0.47 to 0.90 and patient-observer agreement of 0.85. Life Ingredient Profile (LIP) showed IC of α = 0.29–0.77 and test-retest reliability of κ = 0.42–1.0. QOL-E showed correlation with FACT-general of R = 0.71, internal validity of α = 0.7, and test-retest reliability of standardized Cronbach’s α = 0.7–0.92. EORTC QLQ-Leu showed IC of α = 0.6–0.79. The Acute Myeloid Leukemia–Quality of Life (AML-QOL) instrument showed IC of α = 0.72, correlations with EORTC QLQ-30 of magnitudes ρ = 0.59–0.72, and test-retest reliability of ICC = 0.52–0.91. Conclusion Although several QOL instruments have been validated, more research is needed to determine the most clinically useful instruments in patients with AML.
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Affiliation(s)
- Maribel Salas
- Epidemiology and Clinical Safety and Pharmacovigilance, Daiichi Sankyo, Inc., Basking Ridge, NJ, USA.,Centers for Clinical Epidemiology and Biostatistics and Center for Pharmacoepidemiology Research and Training, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, United States
| | - Mackenzie Henderson
- Epidemiology and Clinical Safety and Pharmacovigilance, Daiichi Sankyo, Inc., Basking Ridge, NJ, USA.,Rutgers Institute for Pharmaceutical Industry Fellowships, Rutgers University, Piscataway, NJ, United States
| | | | - Zahidul Islam
- Epidemiology and Clinical Safety and Pharmacovigilance, Daiichi Sankyo, Inc., Basking Ridge, NJ, USA
| | - Nora Tu
- Epidemiology and Clinical Safety and Pharmacovigilance, Daiichi Sankyo, Inc., Basking Ridge, NJ, USA
| | - Aikaterini Bilitou
- HEOR/RWE: Health Economics and Outcomes Research (HEOR)/Real-World Evidence (RWE), Market Access, DSE, Munich, Germany
| | - Maggie Elsharkawy
- Epidemiology and Clinical Safety and Pharmacovigilance, Daiichi Sankyo, Inc., Basking Ridge, NJ, USA
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24
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Zhu S, Wang W, Islam Z, Fu Y, Dong Y. Polydopamine modified ammonium polyphosphate modified shape memory water‐borne epoxy composites with photo‐responsive flame retardant property. J Appl Polym Sci 2020. [DOI: 10.1002/app.49696] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
- Shanwen Zhu
- School of Materials Science and Engineering Zhejiang Sci‐Tech University Hangzhou China
| | - Wenjun Wang
- School of Materials Science and Engineering Zhejiang Sci‐Tech University Hangzhou China
| | - Zahidul Islam
- School of Materials Science and Engineering Zhejiang Sci‐Tech University Hangzhou China
| | - Yaqin Fu
- School of Materials Science and Engineering Zhejiang Sci‐Tech University Hangzhou China
| | - Yubing Dong
- School of Materials Science and Engineering Zhejiang Sci‐Tech University Hangzhou China
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25
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Salas M, Julian M, Drogaris L, Islam Z, Henderson M, Stemhagen A, O'Donnell N, Tu N. Evaluation of patient and healthcare provider (HCP) knowledge, attitudes, and behavior for safety and use of pexidartinib. J Clin Oncol 2020. [DOI: 10.1200/jco.2020.38.15_suppl.e23580] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
e23580 Background: Pexidartinib, a kinase inhibitor, is approved for treatment of adult patients with symptomatic tenosynovial giant cell tumor (TGCT) associated with severe morbidity or functional limitations and not amenable to improvement with surgery. Due to risk of serious and potentially fatal liver injury, pexidartinib is available via a Risk Evaluation and Mitigation Strategy (REMS) Program. A requirement of the REMS is to conduct a qualitative evaluation of stakeholder Knowledge, Attitudes, and Behavior (KAB) of risks via surveys. The objective of the qualitative evaluation is to review key risk message questions with respect to understanding, relevance, clarity and provide recommendations on alternative language, phrasing, and structure. Methods: Anonymized, one-on-one 45–60-min phone interviews with patients and HCPs were conducted by UBC. Patients ≥18 y, diagnosed with TGCT (prioritized) or metastasis/sarcoma of the connective tissue, with different levels of education and fluent reading/speaking English were included. To participate, HCPs were required to treat patients with TGCT (prioritized) or metastasis/sarcoma of the connective tissue, treat patients ≥75% of their time, and clearly read/speak English. Participants were required to complete an Interview Release Form (IRF) and confirm access to a computer/tablet. Participants had little/no familiarity with pexidartinib materials. All interviews followed a standard process, used a pre-scripted guide on general instructions, confidentiality, safety event reporting, rapport building and assessment of health literacy (patients only). Feedback regarding understanding, relevance, and clarity were used to recommend potential alternate language/phrasing. To receive compensation participants were required to execute/return the IRF. Results: Twelve patients were interviewed, majority 67% had TGCT; mean age 52 y; 58% female; 42% reported some college/associates degree. 12 HCPs were interviewed, 67% treated patients with TGCT; 100% male; mean years practicing 22; all spent 75% or more time seeing patients; primary specialty Orthopedics. Areas of confusion/misunderstanding were reported, and questions were then revised. Patient findings: complexity and wordiness; HCP findings: repetition/difficulty reading, and some terminology was not self-explanatory. Conclusions: Feedback from HCPs and patients was received to improve the key risk messages of the KAB. Qualitative research is recommended to improve comprehension and data quality collected.
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Affiliation(s)
| | | | | | | | | | | | | | - Nora Tu
- Daiichi Sankyo, Inc., Basking Ridge, NJ
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26
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Perry BI, Kular A, Brown L, Gajwani R, Jasani R, Islam Z, Birchwood M, Singh SP. The association between treatment beliefs and engagement in care in first episode psychosis. Schizophr Res 2019; 204:409-410. [PMID: 30100109 DOI: 10.1016/j.schres.2018.07.039] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/07/2018] [Revised: 07/24/2018] [Accepted: 07/26/2018] [Indexed: 11/26/2022]
Affiliation(s)
- B I Perry
- Division of Mental Health and Wellbeing, University of Warwick, United Kingdom; Coventry and Warwickshire Partnership NHS Trust, United Kingdom.
| | - A Kular
- Division of Mental Health and Wellbeing, University of Warwick, United Kingdom
| | - L Brown
- Birmingham Women's and Children's NHS Foundation Trust, United Kingdom
| | - R Gajwani
- Institute of Health and Wellbeing, University of Glasgow, United Kingdom
| | - R Jasani
- Humanitarian and Conflict Response Institute, University of Manchester, United Kingdom
| | - Z Islam
- LOROS Hospice, United Kingdom
| | - M Birchwood
- Medical School, University of Warwick, United Kingdom
| | - S P Singh
- Coventry and Warwickshire Partnership NHS Trust, United Kingdom; Mental Health and Wellbeing, University of Warwick, United Kingdom
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27
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Gurevic I, Islam Z, Świderek K, Trepka K, Ghosh AK, Moliner V, Kohen A. Experimental and Computational Studies Delineate the Role of Asparagine 177 in Hydride Transfer for E. coli Thymidylate Synthase. ACS Catal 2018; 8:10241-10253. [PMID: 31275729 DOI: 10.1021/acscatal.8b02554] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Thymidylate synthase (TSase), an enzyme responsible for the de novo biosynthesis of 2'-deoxythymidine 5'-monophosphate (thymidylate, dTMP) necessary for DNA synthesis, has been a drug target for decades. TSase is a highly conserved enzyme across species ranging from very primitive organisms to mammals. Among the many conserved active site residues, an asparagine (N177, using Escherichia coli residues numbering) appears to make direct hydrogen bonds with both the C4=O4 carbonyl of the 2'-deoxyuridine 5'-monophosphate (uridylate, dUMP) substrate and its pyrimidine ring's N3. Recent studies have reassessed the TSase catalytic mechanism, focusing on the degree of negative charge accumulation at the O4 carbonyl of the substrate during two critical H-transfers - a proton abstraction and a hydride transfer. To obtain insights into the role of this conserved N177 on the hydride transfer, we examined its aspartic acid (D) and serine (S) mutants - each of which is expected to alter hydrogen bonding and charge stabilization around the C4=O4 carbonyl of the 2'-deoxyuridine 5'-monophosphate (uridylate, dUMP) substrate. Steady-state kinetics, substrate binding order studies and temperature-dependency analysis of intrinsic KIEs for the hydride transfer step of the TSase catalytic cycle suggest the active site of N177D is not precisely organized for that step. A smaller disruption was observed for N177S, which could be rationalized by partial compensation by water molecules and rearrangement of other residues toward preparation of the system for the hydride transfer under study. These experimental findings are qualitatively mirrored by QM/MM computational simulations, thereby shedding light on the sequence and synchronicity of steps in the TSase-catalyzed reaction. This information could potentially inform the design of mechanism-based drugs targeting this enzyme.
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Affiliation(s)
- Ilya Gurevic
- Department of Chemistry, College of Liberal Arts & Sciences, University of Iowa, Iowa City, Iowa 52242-1727, United States
| | - Zahidul Islam
- Department of Chemistry, College of Liberal Arts & Sciences, University of Iowa, Iowa City, Iowa 52242-1727, United States
| | - Katarzyna Świderek
- Departament de Química Física i Analítica, Universitat Jaume I, 12071 Castelló, Spain
| | - Kai Trepka
- Department of Chemistry, College of Liberal Arts & Sciences, University of Iowa, Iowa City, Iowa 52242-1727, United States
| | - Ananda K. Ghosh
- Department of Chemistry, College of Liberal Arts & Sciences, University of Iowa, Iowa City, Iowa 52242-1727, United States
| | - Vicent Moliner
- Departament de Química Física i Analítica, Universitat Jaume I, 12071 Castelló, Spain
| | - Amnon Kohen
- Department of Chemistry, College of Liberal Arts & Sciences, University of Iowa, Iowa City, Iowa 52242-1727, United States
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28
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Lin JQ, Liu X, Blackburn E, Wakimoto S, Ding H, Islam Z, Sinha SK. Quantitative Characterization of the Nanoscale Local Lattice Strain Induced by Sr Dopants in La_{1.92}Sr_{0.08}CuO_{4}. Phys Rev Lett 2018; 120:197001. [PMID: 29799254 DOI: 10.1103/physrevlett.120.197001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2017] [Revised: 01/24/2018] [Indexed: 06/08/2023]
Abstract
The nanometer scale lattice deformation brought about by the dopants in the high temperature superconducting cuprate La_{2-x}Sr_{x}CuO_{4} (x=0.08) was investigated by measuring the associated x-ray diffuse scattering around multiple Bragg peaks. A characteristic diffuse scattering pattern was observed, which can be well described by continuum elastic theory. With the fitted dipole force parameters, the acoustic-type lattice deformation pattern was reconstructed and found to be of similar size to lattice thermal vibration at 7 K. Our results address the long-term concern of dopant introduced local lattice inhomogeneity, and show that the associated nanometer scale lattice deformation is marginal and cannot, alone, be responsible for the patched variation in the spectral gaps observed with scanning tunneling microscopy in the cuprates.
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Affiliation(s)
- J Q Lin
- Beijing National Laboratory for Condensed Matter Physics and Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China
- School of Physical Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
| | - X Liu
- Beijing National Laboratory for Condensed Matter Physics and Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China
- School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China
- Collaborative Innovation Center of Quantum Matter, Beijing, China
| | - E Blackburn
- School of Physics and Astronomy, University of Birmingham, Birmingham B15 2TT, United Kingdom
| | - S Wakimoto
- Materials Sciences Research Center, Japan Atomic Energy Agency, Tokai, Ibaraki 319-1195, Japan
| | - H Ding
- Beijing National Laboratory for Condensed Matter Physics and Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China
- School of Physical Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
- Collaborative Innovation Center of Quantum Matter, Beijing, China
| | - Z Islam
- Advanced Photon Source, Argonne National Laboratory, Argonne, Illinois 60439, USA
| | - S K Sinha
- Department of Physics, University of California, San Diego, La Jolla, California 92093, USA
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29
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Islam Z, Sarker SK, Jahan I, Farzana KS, Ahmed D, Faruque ASG, Guerry P, Poly F, Heikema AP, Endtz HP. Capsular genotype and lipooligosaccharide locus class distribution in Campylobacter jejuni from young children with diarrhea and asymptomatic carriers in Bangladesh. Eur J Clin Microbiol Infect Dis 2017; 37:723-728. [PMID: 29270862 DOI: 10.1007/s10096-017-3165-7] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2017] [Accepted: 11/27/2017] [Indexed: 11/29/2022]
Abstract
Campylobacter jejuni-related diarrheal diseases is one of the major health issues among young children (0-59 months old) in low-income countries. Monitoring of the capsular (capsule polysaccharide, CPS) types of virulent C. jejuni strains in regions where the disease is endemic is of great importance for the development of a customized capsule-based multivalent vaccine. Therefore, we aimed to determine the prevalence of CPS genotypes among C. jejuni strains isolated from young children with enteritis (n = 152) and asymptomatic carriers matched by age, sex, and residence defined as the control group (n = 215) in Bangladesh. CPS genotyping was performed using a newly established multiplex polymerase chain reaction (PCR) method and lipooligosaccharide (LOS) locus classes (A-E) were characterized using PCR as well. We identified 24 different CPS genotypes among the 367 isolates. Four prevalent capsular types, HS5/31 complex (n = 27, 18%), HS3 (n = 26, 17%), HS4A (n = 10, 7%), and HS8/17 (n = 10, 7%) covered almost 50% of the strains from enteritis patients and 43% of the isolates from controls. In combination, the CPS genotype and LOS class was not discriminative between cases and controls. Dominant capsular types previously identified in C. jejuni strains isolated from patients with Guillain-Barré syndrome in Bangladesh were rarely detected in strains isolated from the young children. A similar distribution was evident among enteritis- and control-related strains when comparison was done between CPS types and LOS classes. This is the first systematic study presenting the distribution of CPS genotypes of C. jejuni strains isolated in Bangladesh from children with diarrhea and controls, with capsular genotypes HS5/31 complex, HS3, HS4A, and HS8/17 being prevalent in both. In conclusion, systematic studies are required to develop a multivalent capsule-based vaccine for children in low-income countries.
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Affiliation(s)
- Z Islam
- Laboratory Sciences and Services Division, International Centre for Diarrhoeal Disease Research (icddr,b), GPO Box-128, Dhaka, 1000, Bangladesh.
| | - S K Sarker
- Laboratory Sciences and Services Division, International Centre for Diarrhoeal Disease Research (icddr,b), GPO Box-128, Dhaka, 1000, Bangladesh
| | - I Jahan
- Laboratory Sciences and Services Division, International Centre for Diarrhoeal Disease Research (icddr,b), GPO Box-128, Dhaka, 1000, Bangladesh
| | - K S Farzana
- Laboratory Sciences and Services Division, International Centre for Diarrhoeal Disease Research (icddr,b), GPO Box-128, Dhaka, 1000, Bangladesh
| | - D Ahmed
- Laboratory Sciences and Services Division, International Centre for Diarrhoeal Disease Research (icddr,b), GPO Box-128, Dhaka, 1000, Bangladesh
| | - A S G Faruque
- Nutrition and Clinical Services Division, International Centre for Diarrhoeal Disease Research, (icddr,b), Dhaka, Bangladesh
| | - P Guerry
- Naval Medical Research Center, Silver Spring, MD, USA
| | - F Poly
- Naval Medical Research Center, Silver Spring, MD, USA
| | - A P Heikema
- Department of Medical Microbiology and Infectious Diseases, Erasmus MC, University Medical Centre Rotterdam, Rotterdam, The Netherlands
| | - H P Endtz
- Laboratory Sciences and Services Division, International Centre for Diarrhoeal Disease Research (icddr,b), GPO Box-128, Dhaka, 1000, Bangladesh.,Department of Medical Microbiology and Infectious Diseases, Erasmus MC, University Medical Centre Rotterdam, Rotterdam, The Netherlands.,Fondation Mérieux, Lyon, France
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30
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Willa K, Diao Z, Campanini D, Welp U, Divan R, Hudl M, Islam Z, Kwok WK, Rydh A. Nanocalorimeter platform for in situ specific heat measurements and x-ray diffraction at low temperature. Rev Sci Instrum 2017; 88:125108. [PMID: 29289216 DOI: 10.1063/1.5016592] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Recent advances in electronics and nanofabrication have enabled membrane-based nanocalorimetry for measurements of the specific heat of microgram-sized samples. We have integrated a nanocalorimeter platform into a 4.5 T split-pair vertical-field magnet to allow for the simultaneous measurement of the specific heat and x-ray scattering in magnetic fields and at temperatures as low as 4 K. This multi-modal approach empowers researchers to directly correlate scattering experiments with insights from thermodynamic properties including structural, electronic, orbital, and magnetic phase transitions. The use of a nanocalorimeter sample platform enables numerous technical advantages: precise measurement and control of the sample temperature, quantification of beam heating effects, fast and precise positioning of the sample in the x-ray beam, and fast acquisition of x-ray scans over a wide temperature range without the need for time-consuming re-centering and re-alignment. Furthermore, on an YBa2Cu3O7-δ crystal and a copper foil, we demonstrate a novel approach to x-ray absorption spectroscopy by monitoring the change in sample temperature as a function of incident photon energy. Finally, we illustrate the new insights that can be gained from in situ structural and thermodynamic measurements by investigating the superheated state occurring at the first-order magneto-elastic phase transition of Fe2P, a material that is of interest for magnetocaloric applications.
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Affiliation(s)
- K Willa
- Materials Science Division, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, Illinois 60439, USA
| | - Z Diao
- Department of Physics, Stockholm University, SE-106 91 Stockholm, Sweden
| | - D Campanini
- Department of Physics, Stockholm University, SE-106 91 Stockholm, Sweden
| | - U Welp
- Materials Science Division, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, Illinois 60439, USA
| | - R Divan
- Center for Nanoscale Materials, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, Illinois 60439, USA
| | - M Hudl
- Department of Physics, Stockholm University, SE-106 91 Stockholm, Sweden
| | - Z Islam
- X-ray Science Division, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, Illinois 60439, USA
| | - W-K Kwok
- Materials Science Division, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, Illinois 60439, USA
| | - A Rydh
- Department of Physics, Stockholm University, SE-106 91 Stockholm, Sweden
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31
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Kessel CGV, Islam Z, Jacobs B, Kamga S, Reusken C, Mogling R, Islam B, Mohammed D, Koopmans M, Endtz H. Guillain-Barré syndrome during an outbreak of Zika virus in Bangladesh: A case-control study. Int J Infect Dis 2016. [DOI: 10.1016/j.ijid.2016.11.039] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
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32
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Abstract
Advances in computational and experimental methods in enzymology have aided comprehension of enzyme-catalyzed chemical reactions. The main difficulty in comparing computational findings to rate measurements is that the first examines a single energy barrier, while the second frequently reflects a combination of many microscopic barriers. We present here intrinsic kinetic isotope effects and their temperature dependence as a useful experimental probe of a single chemical step in a complex kinetic cascade. Computational predictions are tested by this method for two model enzymes: dihydrofolate reductase and thymidylate synthase. The description highlights the significance of collaboration between experimentalists and theoreticians to develop a better understanding of enzyme-catalyzed chemical conversions.
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Affiliation(s)
- P Singh
- University of Iowa, Iowa City, IA, United States
| | - Z Islam
- University of Iowa, Iowa City, IA, United States
| | - A Kohen
- University of Iowa, Iowa City, IA, United States.
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33
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Islam Z, Islam M, Jacobs B, Jahan I, Mohammad Q, Endtz H. Campylobacter jejuni infection and Guillain-Barré syndrome: An emerging cause of acute flaccid paralysis after the eradication of poliomyelitis in Bangladesh. Int J Infect Dis 2016. [DOI: 10.1016/j.ijid.2016.02.414] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022] Open
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34
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Jahan I, Ahammad R, Khalid M, Sarker S, Islam M, Endtz H, Islam Z. Guillain–Barré syndrome in Bangladesh: The role TLR4 Asp299Gly and Thr399Ile polymorphisms. Int J Infect Dis 2016. [DOI: 10.1016/j.ijid.2016.02.142] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022] Open
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Abstract
The enzyme thymidylate synthase (TSase), an important chemotherapeutic drug target, catalyzes the formation of 2'-deoxythymidine-5'-monophosphate (dTMP), a precursor of one of the DNA building blocks. TSase catalyzes a multi-step mechanism that includes the abstraction of a proton from the C5 of the substrate 2'-deoxyuridine-5'-monophosphate (dUMP). Previous studies on ecTSase proposed that an active-site residue, Y94 serves the role of the general base abstracting this proton. However, since Y94 is neither very basic, nor connected to basic residues, nor located close enough to the pyrimidine proton to be abstracted, the actual identity of this base remains enigmatic. Based on crystal structures, an alternative hypothesis is that the nearest potential proton-acceptor of C5 of dUMP is a water molecule that is part of a hydrogen bond (H-bond) network comprised of several water molecules and several protein residues including H147, E58, N177, and Y94. Here, we examine the role of the residue Y94 in the proton abstraction step by removing its hydroxyl group (Y94F mutant). We investigated the effect of the mutation on the temperature dependence of intrinsic kinetic isotope effects (KIEs) and found that these KIEs are more temperature dependent than those of the wild-type enzyme (WT). These results suggest that the phenolic -OH of Y94 is a component of the transition state for the proton abstraction step. The findings further support the hypothesis that no single functional group is the general base, but a network of bases and hydroxyls (from water molecules and tyrosine) sharing H-bonds across the active site can serve the role of the general base to remove the pyrimidine proton.
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Affiliation(s)
- Ananda K Ghosh
- Department of Chemistry, University of Iowa, Iowa City, IA 52242, USA.
| | - Zahidul Islam
- Department of Chemistry, University of Iowa, Iowa City, IA 52242, USA.
| | - Jonathan Krueger
- Department of Chemistry, University of Iowa, Iowa City, IA 52242, USA.
| | - Thelma Abeysinghe
- Department of Chemistry, University of Iowa, Iowa City, IA 52242, USA.
| | - Amnon Kohen
- Department of Chemistry, University of Iowa, Iowa City, IA 52242, USA.
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Gerber S, Jang H, Nojiri H, Matsuzawa S, Yasumura H, Bonn DA, Liang R, Hardy WN, Islam Z, Mehta A, Song S, Sikorski M, Stefanescu D, Feng Y, Kivelson SA, Devereaux TP, Shen ZX, Kao CC, Lee WS, Zhu D, Lee JS. Three-dimensional charge density wave order in YBa2Cu3O6.67 at high magnetic fields. Science 2015; 350:949-52. [PMID: 26541608 DOI: 10.1126/science.aac6257] [Citation(s) in RCA: 238] [Impact Index Per Article: 26.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2015] [Accepted: 09/30/2015] [Indexed: 11/02/2022]
Abstract
Charge density wave (CDW) correlations have been shown to universally exist in cuprate superconductors. However, their nature at high fields inferred from nuclear magnetic resonance is distinct from that measured with x-ray scattering at zero and low fields. We combined a pulsed magnet with an x-ray free-electron laser to characterize the CDW in YBa2Cu3O6.67 via x-ray scattering in fields of up to 28 tesla. While the zero-field CDW order, which develops at temperatures below ~150 kelvin, is essentially two dimensional, at lower temperature and beyond 15 tesla, another three-dimensionally ordered CDW emerges. The field-induced CDW appears around the zero-field superconducting transition temperature; in contrast, the incommensurate in-plane ordering vector is field-independent. This implies that the two forms of CDW and high-temperature superconductivity are intimately linked.
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Affiliation(s)
- S Gerber
- Stanford Institute for Materials and Energy Science, SLAC National Accelerator Laboratory and Stanford University, Menlo Park, CA 94025, USA
| | - H Jang
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA
| | - H Nojiri
- Institute for Materials Research, Tohoku University, Katahira 2-1-1, Sendai, 980-8577, Japan
| | - S Matsuzawa
- Institute for Materials Research, Tohoku University, Katahira 2-1-1, Sendai, 980-8577, Japan
| | - H Yasumura
- Institute for Materials Research, Tohoku University, Katahira 2-1-1, Sendai, 980-8577, Japan
| | - D A Bonn
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada. Canadian Institute for Advanced Research, Toronto, Ontario M5G 1Z8, Canada
| | - R Liang
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada. Canadian Institute for Advanced Research, Toronto, Ontario M5G 1Z8, Canada
| | - W N Hardy
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada. Canadian Institute for Advanced Research, Toronto, Ontario M5G 1Z8, Canada
| | - Z Islam
- The Advanced Photon Source, Argonne National Laboratory, Argonne, IL 60439, USA
| | - A Mehta
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA
| | - S Song
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA
| | - M Sikorski
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA
| | - D Stefanescu
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA
| | - Y Feng
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA
| | - S A Kivelson
- Geballe Laboratory for Advanced Materials, Departments of Physics and Applied Physics, Stanford University, Stanford, CA 94305, USA
| | - T P Devereaux
- Stanford Institute for Materials and Energy Science, SLAC National Accelerator Laboratory and Stanford University, Menlo Park, CA 94025, USA
| | - Z-X Shen
- Stanford Institute for Materials and Energy Science, SLAC National Accelerator Laboratory and Stanford University, Menlo Park, CA 94025, USA. Geballe Laboratory for Advanced Materials, Departments of Physics and Applied Physics, Stanford University, Stanford, CA 94305, USA
| | - C-C Kao
- SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA
| | - W-S Lee
- Stanford Institute for Materials and Energy Science, SLAC National Accelerator Laboratory and Stanford University, Menlo Park, CA 94025, USA.
| | - D Zhu
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.
| | - J-S Lee
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.
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Abstract
Thymidylate synthase (TSase) catalyzes the de novo biosynthesis of thymidylate, a precursor for DNA, and is thus an important target for chemotherapeutics and antibiotics. Two sequential C-H bond cleavages catalyzed by TSase are of particular interest: a reversible proton abstraction from the 2'-deoxy-uridylate substrate, followed by an irreversible hydride transfer forming the thymidylate product. QM/MM calculations of the former predicted a mechanism where the abstraction of the proton leads to formation of a novel nucleotide-folate intermediate that is not covalently bound to the enzyme (Wang, Z.; Ferrer, S.; Moliner, V.; Kohen, A. Biochemistry2013, 52, 2348-2358). Existence of such intermediate would hold promise as a target for a new class of drugs. Calculations of the subsequent hydride transfer predicted a concerted H-transfer and elimination of the enzymatic cysteine (Kanaan, N.; Ferrer, S.; Marti, S.; Garcia-Viloca, M.; Kohen, A.; Moliner, V. J. Am. Chem. Soc.2011, 133, 6692-6702). A key to both C-H activations is a highly conserved arginine (R166) that stabilizes the transition state of both H-transfers. Here we test these predictions by studying the R166 to lysine mutant of E. coli TSase (R166K) using intrinsic kinetic isotope effects (KIEs) and their temperature dependence to assess effects of the mutation on both chemical steps. The findings confirmed the predictions made by the QM/MM calculations, implicate R166 as an integral component of both reaction coordinates, and thus provide critical support to the nucleotide-folate intermediate as a new target for rational drug design.
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Affiliation(s)
- Zahidul Islam
- The Department of Chemistry, The University of Iowa, Iowa City, IA 52242, U.S.A
| | | | - Ananda K. Ghosh
- The Department of Chemistry, The University of Iowa, Iowa City, IA 52242, U.S.A
| | - Amnon Kohen
- The Department of Chemistry, The University of Iowa, Iowa City, IA 52242, U.S.A
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Heikema AP, Islam Z, Horst-Kreft D, Huizinga R, Jacobs BC, Wagenaar JA, Poly F, Guerry P, van Belkum A, Parker CT, Endtz HP. Campylobacter jejuni capsular genotypes are related to Guillain-Barré syndrome. Clin Microbiol Infect 2015; 21:852.e1-9. [PMID: 26070960 DOI: 10.1016/j.cmi.2015.05.031] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2014] [Revised: 02/05/2015] [Accepted: 05/22/2015] [Indexed: 10/23/2022]
Abstract
In about one in a thousand cases, a Campylobacter jejuni infection results in the severe polyneuropathy Guillain-Barré syndrome (GBS). It is established that sialylated lipo-oligosaccharides (LOS) of C. jejuni are a crucial virulence factor in GBS development. Frequent detection of C. jejuni with sialylated LOS in stools derived from patients with uncomplicated enteritis implies that additional bacterial factors should be involved. To assess whether the polysaccharide capsule is a marker for GBS, the capsular genotypes of two geographically distinct GBS-associated C. jejuni strain collections and an uncomplicated enteritis control collection were determined. Capsular genotyping of C. jejuni strains from the Netherlands revealed that three capsular genotypes, HS1/44c, HS2 and HS4c, were dominant in GBS-associated strains and capsular types HS1/44c and HS4c were significantly associated with GBS (p 0.05 and p 0.01, respectively) when compared with uncomplicated enteritis. In a GBS-associated strain collection from Bangladesh, capsular types HS23/36c, HS19 and HS41 were most prevalent and the capsular types HS19 and HS41 were associated with GBS (p 0.008 and p 0.02, respectively). Next, specific combinations of the LOS class and capsular genotypes were identified that were related to the occurrence of GBS. Multilocus sequence typing revealed restricted genetic diversity for strain populations with the capsular types HS2, HS19 and HS41. We conclude that capsular types HS1/44c, HS2, HS4c, HS19, HS23/36c and HS41 are markers for GBS. Besides a crucial role for sialylated LOS of C. jejuni in GBS pathogenesis, the identified capsules may contribute to GBS susceptibility.
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Affiliation(s)
- A P Heikema
- Department of Medical Microbiology and Infectious Diseases, Erasmus MC, University Medical Centre Rotterdam, The Netherlands.
| | - Z Islam
- International Centre for Diarrhoeal Disease Research Bangladesh, Dhaka, Bangladesh
| | - D Horst-Kreft
- Department of Medical Microbiology and Infectious Diseases, Erasmus MC, University Medical Centre Rotterdam, The Netherlands
| | - R Huizinga
- Department of Immunology, Erasmus MC, University Medical Centre Rotterdam, The Netherlands
| | - B C Jacobs
- Department of Immunology, Erasmus MC, University Medical Centre Rotterdam, The Netherlands; Department of Neurology, Erasmus MC, University Medical Centre Rotterdam, The Netherlands
| | - J A Wagenaar
- Department of Infectious Diseases and Immunology, Faculty of Veterinary Medicine, Utrecht University, The Netherlands; Central Veterinary Institute of Wageningen UR, Lelystad, The Netherlands
| | - F Poly
- Naval Medical Research Center, Silver Spring, MD, USA
| | - P Guerry
- Naval Medical Research Center, Silver Spring, MD, USA
| | - A van Belkum
- bioMérieux, R&D Microbiology, La Balme Les Grottes, France
| | - C T Parker
- Produce Safety and Microbiology Research Unit, Agricultural Research Service, United States Department of Agriculture, Albany, CA, USA
| | - H P Endtz
- Department of Medical Microbiology and Infectious Diseases, Erasmus MC, University Medical Centre Rotterdam, The Netherlands; International Centre for Diarrhoeal Disease Research Bangladesh, Dhaka, Bangladesh; Fondation Mérieux, Lyon, France
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Ghosh A, Krueger J, Islam Z, Kohen A. The General Base for the Thymidylate Synthase Catalyzed Proton Abstraction. FASEB J 2015. [DOI: 10.1096/fasebj.29.1_supplement.722.11] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Ananda Ghosh
- Department of ChemistryThe University of IowaIowa CityIAUnited States
| | - Jonathan Krueger
- Department of ChemistryThe University of IowaIowa CityIAUnited States
| | - Zahidul Islam
- Department of ChemistryThe University of IowaIowa CityIAUnited States
| | - Amnon Kohen
- Department of ChemistryThe University of IowaIowa CityIAUnited States
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Islam Z, Strutzenberg T, Ghosh A, Kohen A. Activation of Two Sequential C‐H bonds in the Thymidylate Synthase‐Catalyzed Reaction. FASEB J 2015. [DOI: 10.1096/fasebj.29.1_supplement.572.8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Zahidul Islam
- ChemistryThe University of IowaIowa CityIAUnited States
| | | | - Ananda Ghosh
- ChemistryThe University of IowaIowa CityIAUnited States
| | - Amnon Kohen
- ChemistryThe University of IowaIowa CityIAUnited States
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Abstract
Thymidylate synthase (TSase) catalyzes the intracellular de novo formation of thymidylate (a DNA building block) in most living organisms, making it a common target for chemotherapeutic and antibiotic drugs. Two mechanisms have been proposed for the rate-limiting hydride transfer step in TSase catalysis: a stepwise mechanism in which the hydride transfer precedes the cleavage of the covalent bond between the enzymatic cysteine and the product and a mechanism where both happen concertedly. Striking similarities between the enzyme-bound enolate intermediates formed in the initial and final step of the reaction supported the first mechanism, while QM/MM calculations favored the concerted mechanism. Here, we experimentally test these two possibilities using secondary kinetic isotope effect (KIE), mutagenesis study, and primary KIEs. The findings support the concerted mechanism and demonstrate the critical role of an active site arginine in substrate binding, activation of enzymatic nucleophile, and the hydride transfer studied here. The elucidation of this reduction/substitution sheds light on the critical catalytic step in TSase and may aid future drug or biomimetic catalyst design.
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Affiliation(s)
- Zahidul Islam
- Department of Chemistry, The University of Iowa , Iowa City, Iowa 52242-1727, United States
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Modic KA, Smidt TE, Kimchi I, Breznay NP, Biffin A, Choi S, Johnson RD, Coldea R, Watkins-Curry P, McCandless GT, Chan JY, Gandara F, Islam Z, Vishwanath A, Shekhter A, McDonald RD, Analytis JG. Realization of a three-dimensional spin–anisotropic harmonic honeycomb iridate. Nat Commun 2014; 5:4203. [DOI: 10.1038/ncomms5203] [Citation(s) in RCA: 218] [Impact Index Per Article: 21.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2014] [Accepted: 05/23/2014] [Indexed: 11/09/2022] Open
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Islam Z, van Belkum A, Wagenaar JA, Cody AJ, de Boer AG, Sarker SK, Jacobs BC, Talukder KA, Endtz HP. Comparative population structure analysis of Campylobacter jejuni from human and poultry origin in Bangladesh. Eur J Clin Microbiol Infect Dis 2014; 33:2173-81. [PMID: 24962195 DOI: 10.1007/s10096-014-2184-x] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2014] [Accepted: 06/09/2014] [Indexed: 12/01/2022]
Abstract
Campylobacter jejuni is the most important cause of antecedent infections leading to Guillain-Barré syndrome (GBS) and Miller Fisher syndrome (MFS). The objective of the present study was to define the genetic diversity, population structure, and potential role of poultry in the transmission of Campylobacter to humans in Bangladesh. We determined the population structure of C. jejuni isolated from poultry (n = 66) and patients with enteritis (n = 39) or GBS (n = 10). Lipooligosaccharide (LOS) typing showed that 50/66 (76 %) C. jejuni strains isolated from poultry could be assigned to one of five LOS locus classes (A-E). The distribution of neuropathy-associated LOS locus classes A, B, and C were 30/50 (60 %) among the typable strains isolated from poultry. The LOS locus classes A, B, and C were significantly associated with GBS and enteritis-related C. jejuni strains more than for the poultry strains [(31/38 (82 %) vs. 30/50 (60 %), p < 0.05]. Multilocus sequence typing (MLST) defined 15 sequence types (STs) and six clonal complexes (CCs) among poultry isolates, including one ST-3740 not previously documented. The most commonly identified type, ST-5 (13/66), in chicken was seen only once among human isolates (1/49) (p < 0.001). Amplified fragment length polymorphism (AFLP) revealed three major clusters (A, B, and C) among C. jejuni isolated from humans and poultry. There seems to be a lack of overlap between the major human and chicken clones, which suggests that there may be additional sources for campylobacteriosis other than poultry in Bangladesh.
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Affiliation(s)
- Z Islam
- Emerging Diseases and Immunobiology Research Group, Centre for Food and Waterborne Diseases (CFWD), International Centre for Diarrheal Diseases Research (ICDDR,B), GPO Box 128, Dhaka, 1000, Bangladesh,
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Lupascu A, Clancy JP, Gretarsson H, Nie Z, Nichols J, Terzic J, Cao G, Seo SSA, Islam Z, Upton MH, Kim J, Casa D, Gog T, Said AH, Katukuri VM, Stoll H, Hozoi L, van den Brink J, Kim YJ. Tuning magnetic coupling in Sr2IrO4 thin films with epitaxial strain. Phys Rev Lett 2014; 112:147201. [PMID: 24766006 DOI: 10.1103/physrevlett.112.147201] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2013] [Indexed: 06/03/2023]
Abstract
We report x-ray resonant magnetic scattering and resonant inelastic x-ray scattering studies of epitaxially strained Sr2IrO4 thin films. The films were grown on SrTiO3 and (LaAlO3)0.3(Sr2AlTaO6)0.7 substrates, under slight tensile and compressive strains, respectively. Although the films develop a magnetic structure reminiscent of bulk Sr2IrO4, the magnetic correlations are extremely anisotropic, with in-plane correlation lengths significantly longer than the out-of-plane correlation lengths. In addition, the compressive (tensile) strain serves to suppress (enhance) the magnetic ordering temperature TN, while raising (lowering) the energy of the zone-boundary magnon. Quantum chemical calculations show that the tuning of magnetic energy scales can be understood in terms of strain-induced changes in bond lengths.
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Affiliation(s)
- A Lupascu
- Department of Physics, University of Toronto, 60 St. George Street, Toronto, Ontario M5S 1A7, Canada
| | - J P Clancy
- Department of Physics, University of Toronto, 60 St. George Street, Toronto, Ontario M5S 1A7, Canada
| | - H Gretarsson
- Department of Physics, University of Toronto, 60 St. George Street, Toronto, Ontario M5S 1A7, Canada
| | - Zixin Nie
- Department of Physics, University of Toronto, 60 St. George Street, Toronto, Ontario M5S 1A7, Canada
| | - J Nichols
- Department of Physics and Astronomy, University of Kentucky, Lexington, Kentucky 40506, USA
| | - J Terzic
- Department of Physics and Astronomy, University of Kentucky, Lexington, Kentucky 40506, USA
| | - G Cao
- Department of Physics and Astronomy, University of Kentucky, Lexington, Kentucky 40506, USA
| | - S S A Seo
- Department of Physics and Astronomy, University of Kentucky, Lexington, Kentucky 40506, USA
| | - Z Islam
- Advanced Photon Source, Argonne National Laboratory, Argonne, Illinois 60439, USA
| | - M H Upton
- Advanced Photon Source, Argonne National Laboratory, Argonne, Illinois 60439, USA
| | - Jungho Kim
- Advanced Photon Source, Argonne National Laboratory, Argonne, Illinois 60439, USA
| | - D Casa
- Advanced Photon Source, Argonne National Laboratory, Argonne, Illinois 60439, USA
| | - T Gog
- Advanced Photon Source, Argonne National Laboratory, Argonne, Illinois 60439, USA
| | - A H Said
- Advanced Photon Source, Argonne National Laboratory, Argonne, Illinois 60439, USA
| | - Vamshi M Katukuri
- Institute for Theoretical Solid State Physics, IFW Dresden, Helmholtzstrasse. 20, 01069 Dresden, Germany
| | - H Stoll
- Institute for Theoretical Chemistry, Universität Stuttgart, Pfaffenwaldring 55, D-70569 Stuttgart, Germany
| | - L Hozoi
- Institute for Theoretical Solid State Physics, IFW Dresden, Helmholtzstrasse. 20, 01069 Dresden, Germany
| | - J van den Brink
- Institute for Theoretical Solid State Physics, IFW Dresden, Helmholtzstrasse. 20, 01069 Dresden, Germany
| | - Young-June Kim
- Department of Physics, University of Toronto, 60 St. George Street, Toronto, Ontario M5S 1A7, Canada
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Abstract
BACKGROUND There has been major concern about the 'over-representation' of Black and ethnic minority groups amongst people detained under the Mental Health Act (MHA). We explored the effect of patient ethnicity on detention following an MHA assessment, once confounding variables were controlled for. METHOD Prospective data were collected for all MHA assessments over 4-month periods in the years 2008, 2009, 2010 and 2011 each in three regions in England: Birmingham, West London and Oxfordshire. Logistic regression modelling was conducted to predict the outcome of MHA assessments - either resulting in 'detention' or 'no detention'. RESULTS Of the 4423 MHA assessments, 2841 (66%) resulted in a detention. A diagnosis of psychosis, the presence of risk, female gender, level of social support and London as the site of assessment predicted detention under the MHA. Ethnicity was not an independent predictor of detention. CONCLUSIONS There is no evidence for that amongst those assessed under the MHA, ethnicity has an independent effect on the odds of being detained.
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Affiliation(s)
- S P Singh
- Mental Health and Wellbeing, Warwick Medical School, Coventry, UK
| | - T Burns
- University of Oxford, Warneford Hospital, Oxford, UK
| | - P Tyrer
- Imperial College London, Claybrook Centre, London, UK
| | - Z Islam
- Birmingham and Solihull Mental Health Foundation Trust, Birmingham, UK
| | - H Parsons
- Division of Health Sciences, Warwick Medical School, UK
| | - M J Crawford
- Imperial College London, Claybrook Centre, London, UK
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Singh SP, Burns P, Tyrer P, Islam Z, Parsons H, Crawford MJ. 'Ethnicity as a predictor of detention under the Mental Health Act': a response to Singh et al. - a reply. Psychol Med 2014; 44:894-896. [PMID: 24600699 DOI: 10.1017/s0033291713003061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Roston D, Islam Z, Kohen A. Kinetic isotope effects as a probe of hydrogen transfers to and from common enzymatic cofactors. Arch Biochem Biophys 2014; 544:96-104. [PMID: 24161942 PMCID: PMC3946509 DOI: 10.1016/j.abb.2013.10.010] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2013] [Revised: 10/10/2013] [Accepted: 10/14/2013] [Indexed: 10/26/2022]
Abstract
Enzymes use a number of common cofactors as sources of hydrogen to drive biological processes, but the physics of the hydrogen transfers to and from these cofactors is not fully understood. Researchers study the mechanistically important contributions from quantum tunneling and enzyme dynamics and connect those processes to the catalytic power of enzymes that use these cofactors. Here we describe some progress that has been made in studying these reactions, particularly through the use of kinetic isotope effects (KIEs). We first discuss the general theoretical framework necessary to interpret experimental KIEs, and then describe practical uses for KIEs in the context of two case studies. The first example is alcohol dehydrogenase, which uses a nicotinamide cofactor to catalyze a hydride transfer, and the second example is thymidylate synthase, which uses a folate cofactor to catalyze both a hydride and a proton transfer.
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Affiliation(s)
- Daniel Roston
- Department of Chemistry, The University of Iowa, Iowa City, IA 52242, USA
| | - Zahidul Islam
- Department of Chemistry, The University of Iowa, Iowa City, IA 52242, USA
| | - Amnon Kohen
- Department of Chemistry, The University of Iowa, Iowa City, IA 52242, USA.
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Singh SP, Islam Z, Brown LJ, Gajwani R, Jasani R, Rabiee F, Parsons H. Ethnicity, detention and early intervention: reducing inequalities and improving outcomes for black and minority ethnic patients: the ENRICH programme, a mixed-methods study. Programme Grants for Applied Research 2013. [DOI: 10.3310/pgfar01030] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
BackgroundBlack and minority ethnic (BME) service users experience adverse pathways into care. Ethnic differences are evident even at first-episode psychosis (FEP); therefore, contributory factors must operate before first presentation to psychiatric services. The ENRICH programme comprised three interlinked studies that aimed to understand ethnic and cultural determinants of help-seeking and pathways to care.Aims and objectivesStudy 1: to understand ethnic differences in pathways to care in FEP by exploring cultural determinants of illness recognition, attribution and help-seeking among different ethnic groups. Study 2: to evaluate the process of detention under the Mental Health Act (MHA) and determine predictors of detention. Study 3: to determine the appropriateness, accessibility and acceptability of generic early intervention services for different ethnic groups.MethodsStudy 1: We recruited a prospective cohort of FEP patients and their carers over a 2-year period and assessed the chronology of symptom emergence, attribution and help-seeking using semistructured tools: the Nottingham Onset Schedule (NOS), the Emerging Psychosis Attribution Schedule and the ENRICH Amended Encounter Form. A stratified subsample of user–carer NOS interviews was subjected to qualitative analyses. Study 2: Clinical and sociodemographic data including reasons for detention were collected for all MHA assessments conducted over 1 year (April 2009–March 2010). Five cases from each major ethnic group were randomly selected for a qualitative exploration of carer perceptions of the MHA assessment process, its outcomes and alternatives to detention. Study 3: Focus groups were conducted with service users, carers, health professionals, key stakeholders from voluntary sector and community groups, commissioners and representatives of spiritual care with regard to the question: ‘How appropriate and accessible are generic early intervention services for the specific ethnic and cultural needs of BME communities in Birmingham?’ResultsThere were no ethnic differences in duration of untreated psychosis (DUP) and duration of untreated illness in FEP. DUP was not related to illness attribution; long DUP was associated with patients being young (< 18 years) and living alone. Black patients had a greater risk of MHA detention, more criminal justice involvement and more crisis presentations than white and Asian groups. Asian carers and users were most likely to attribute symptoms to faith-based or supernatural explanations and to seek help from faith organisations. Faith-based help-seeking, although offering comfort and meaning, also risked delaying access to medical care and in some cases also resulted in financial exploitation of this vulnerable group. The BME excess in MHA detentions was not because of ethnicity per se; the main predictors of detention were a diagnosis of mental illness, presence of risk and low level of social support. Early intervention services were perceived to be accessible, supportive, acceptable and culturally appropriate. There was no demand or perceived need for separate services for BME groups or for ethnic matching between users and clinicians.ConclusionsStatutory health-care organisations need to work closely with community groups to improve pathways to care for BME service users. Rather than universal public education campaigns, researchers need to develop and evaluate public awareness programmes that are specifically focused on BME groups.FundingThe National Institute for Health Research Programme Grants for Applied Research programme.
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Affiliation(s)
- SP Singh
- Division of Mental Health and Wellbeing, Warwick Medical School, Warwick University, Coventry, UK
- Research and Innovation Department, Birmingham and Solihull Mental Health NHS Foundation Trust, Birmingham, UK
| | - Z Islam
- Division of Mental Health and Wellbeing, Warwick Medical School, Warwick University, Coventry, UK
- Research and Innovation Department, Birmingham and Solihull Mental Health NHS Foundation Trust, Birmingham, UK
| | - LJ Brown
- Division of Mental Health and Wellbeing, Warwick Medical School, Warwick University, Coventry, UK
- Research and Innovation Department, Birmingham and Solihull Mental Health NHS Foundation Trust, Birmingham, UK
| | - R Gajwani
- School of Psychology, University of Birmingham, Birmingham, UK
| | - R Jasani
- Humanitarian and Conflict Response Institute (HCRI), University of Manchester, Manchester, UK
| | - F Rabiee
- Centre for Health and Social Care Research, Faculty of Health, Birmingham City University, Birmingham, UK
| | - H Parsons
- Division of Health Sciences, Warwick Medical School, Warwick University, Coventry, UK
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Savenko O, Filippovych S, Islam Z. P6.022 Results of the Global Fund Programmes Implementation on STI Diagnostics and Treatment Within Most-At-Risk Populations in Ukraine. Br J Vener Dis 2013. [DOI: 10.1136/sextrans-2013-051184.1176] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
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Savenko O, Filippovych S, Islam Z. P6.046 Integration of STI Diagnostics and Treatment Programmes and HIV Prevention Programmes For Vulnerable Groups. Br J Vener Dis 2013. [DOI: 10.1136/sextrans-2013-051184.1199] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
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