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Tunsakul N, Wongsaroj L, Janchot K, Pongpirul K, Somboonna N. Non-significant influence between aerobic and anaerobic sample transport materials on gut (fecal) microbiota in healthy and fat-metabolic disorder Thai adults. PeerJ 2024; 12:e17270. [PMID: 38650647 PMCID: PMC11034497 DOI: 10.7717/peerj.17270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2023] [Accepted: 03/29/2024] [Indexed: 04/25/2024] Open
Abstract
Background The appropriate sample handling for human fecal microbiota studies is essential to prevent changes in bacterial composition and quantities that could lead to misinterpretation of the data. Methods This study firstly identified the potential effect of aerobic and anaerobic fecal sample collection and transport materials on microbiota and quantitative microbiota in healthy and fat-metabolic disorder Thai adults aged 23-43 years. We employed metagenomics followed by 16S rRNA gene sequencing and 16S rRNA gene qPCR, to analyze taxonomic composition, alpha diversity, beta diversity, bacterial quantification, Pearson's correlation with clinical factors for fat-metabolic disorder, and the microbial community and species potential metabolic functions. Results Our study successfully obtained microbiota results in percent and quantitative compositions. Each sample exhibited quality sequences with a >99% Good's coverage index, and a relatively plateau rarefaction curve. Alpha diversity indices showed no statistical difference in percent and quantitative microbiota OTU richness and evenness, between aerobic and anaerobic sample transport materials. Obligate and facultative anaerobic species were analyzed and no statistical difference was observed. Supportively, the beta diversity analysis by non-metric multidimensional scale (NMDS) constructed using various beta diversity coefficients showed resembling microbiota community structures between aerobic and anaerobic sample transport groups (P = 0.86). On the other hand, the beta diversity could distinguish microbiota community structures between healthy and fat-metabolic disorder groups (P = 0.02), along with Pearson's correlated clinical parameters (i.e., age, liver stiffness, GGT, BMI, and TC), the significantly associated bacterial species and their microbial metabolic functions. For example, genera such as Ruminococcus and Bifidobacterium in healthy human gut provide functions in metabolisms of cofactors and vitamins, biosynthesis of secondary metabolites against gut pathogens, energy metabolisms, digestive system, and carbohydrate metabolism. These microbial functional characteristics were also predicted as healthy individual biomarkers by LEfSe scores. In conclusion, this study demonstrated that aerobic sample collection and transport (<48 h) did not statistically affect the microbiota and quantitative microbiota analyses in alpha and beta diversity measurements. The study also showed that the short-term aerobic sample collection and transport still allowed fecal microbiota differentiation between healthy and fat-metabolic disorder subjects, similar to anaerobic sample collection and transport. The core microbiota were analyzed, and the findings were consistent. Moreover, the microbiota-related metabolic potentials and bacterial species biomarkers in healthy and fat-metabolic disorder were suggested with statistical bioinformatics (i.e., Bacteroides plebeius).
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Affiliation(s)
- Naruemon Tunsakul
- Program in Biotechnology, Faculty of Science, Chulalongkorn University, Bangkok, Thailand
| | - Lampet Wongsaroj
- Department of Microbiology, Faculty of Science, Chulalongkorn University, Bangkok, Thailand
| | - Kantima Janchot
- Center of Excellence in Preventive and Integrative Medicine (CE-PIM) and Department of Preventive and Social Medicine, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand
| | - Krit Pongpirul
- Center of Excellence in Preventive and Integrative Medicine (CE-PIM) and Department of Preventive and Social Medicine, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand
| | - Naraporn Somboonna
- Department of Microbiology, Faculty of Science, Chulalongkorn University, Bangkok, Thailand
- Microbiome Research Unit for Probiotics in Food and Cosmetics, Chulalongkorn University, Bangkok, Thailand
- Omics Sciences and Bioinformatics Center, Faculty of Science, Chulalongkorn University, Bangkok, Thailand
- Multi-Omics for Functional Products in Food, Cosmetics and Animals Research Unit, Chulalongkorn University, Bangkok, Thailand
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Wang YW, Bai DS, Zhang Y, Luo XG. The role of afforestation with diverse woody species in enhancing and restructuring the soil microenvironment in polymetallic coal gangue dumps. Environ Sci Pollut Res Int 2024; 31:29916-29929. [PMID: 38594563 DOI: 10.1007/s11356-024-33164-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Accepted: 03/27/2024] [Indexed: 04/11/2024]
Abstract
To elucidate the effects of long-term (20 years) afforestation with different woody plant species on the soil microenvironment in coal gangue polymetallic contaminated areas. This study analyzed the soil physicochemical properties, soil enzyme activities, soil ionophore, bacterial community structure, soil metabolite, and their interaction relationships at different vertical depths. Urease, sucrase, and acid phosphatase activities in the shallow soil layers increased by 4.70-7.45, 3.83-7.64, and 3.27-4.85 times, respectively, after the restoration by the four arboreal plant species compared to the plant-free control soil. Additionally, it reduced the content of available elements in the soil and alleviated the toxicity stress for Cd, Ni, Co, Cr, As, Fe, Cu, U, and Pb. After the long-term restoration of arboreal plants, the richness and Shannon indices of soil bacteria significantly increased by 4.77-23.81% and 2.93-7.93%, respectively, broadening the bacterial ecological niche. The bacterial community structure shaped by different arboreal plants exhibited high similarity, but the community similarity decreased with increasing vertical depth. Soils Zn, U, Sr, S, P, Mg, K, Fe, Cu, Ca, Ba, and pH were identified as important influencing factors for the community structure of Sphingomonas, Pseudarthrobacter, Nocardioides, and Thiobacillus. The metabolites such as sucrose, raffinose, L-valine, D-fructose 2, 6-bisphosphate, and oxoglutaric acid were found to have the greatest effect on the bacterial community in the rhizosphere soils for arboreal plants. The results of the study demonstrated that long-term planting for woody plants in gangue dumps could regulate microbial abundance and symbiotic patterns through the accumulation of rhizosphere metabolites in the soil, increase soil enzyme activity, reduce heavy metal levels, and improve the soil environment in coal gangue dumps.
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Affiliation(s)
- Yi-Wang Wang
- School of Life Science and Engineering, Southwest University of Science and Technology, Mianyang, 621010, China
- Engineering Research Center of Biomass Materials, Ministry of Education, Southwest University of Science and Technology, Mianyang, 621010, China
| | | | - Yu Zhang
- School of Life Science and Engineering, Southwest University of Science and Technology, Mianyang, 621010, China.
- Engineering Research Center of Biomass Materials, Ministry of Education, Southwest University of Science and Technology, Mianyang, 621010, China.
| | - Xue-Gang Luo
- School of Life Science and Engineering, Southwest University of Science and Technology, Mianyang, 621010, China
- Engineering Research Center of Biomass Materials, Ministry of Education, Southwest University of Science and Technology, Mianyang, 621010, China
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Wen Y, Zhang G, Zhang W, Liu G. Distribution patterns and functional characteristics of soil bacterial communities in desert ecosystems of northern China. Sci Total Environ 2023; 905:167081. [PMID: 37714348 DOI: 10.1016/j.scitotenv.2023.167081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2023] [Revised: 09/04/2023] [Accepted: 09/12/2023] [Indexed: 09/17/2023]
Abstract
Deserts are extremely arid environments where life is exposed to multiple environmental stresses, including low water availability, high temperatures, intense radiation environments and soil carbon and nitrogen limitation. Microorganisms have enormous potential applications due to their unique physiological adaptation mechanisms, extensive involvement in geochemical cycles and production of new antibiotics, among many other characteristics. With the increasing amount of open data provides unprecedented opportunities to further reveal bacterial biodiversity and its global role in ecosystem function. Through the collection of published high-quality sequencing data supplemented with experimental findings, we investigated the distribution characteristics and functional properties of bacteria in desert ecosystems in northern China. We show that there are significant differences in bacterial diversity among different sandy areas, and that soil properties and climatic factors are the main factors affecting bacterial diversity in desert ecosystems. The mean annual precipitation in growing season, soil organic carbon, total nitrogen and total phosphorus had significant effects on the diversity of desert bacteria and main bacteria. Desert bacteria primarily participate in the macromolecular decomposition, phototrophy, and geochemical cycling of nitrogen. These findings deepen our understanding of the regional-scale soil microbial diversity patterns in Chinese desert ecosystems and broaden our understanding of the ecological functions carried out by bacteria in these environments.
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Affiliation(s)
- Ying Wen
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering of Gansu Province, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Key Laboratory of Desert and Desertification, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Gaosen Zhang
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering of Gansu Province, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Key Laboratory of Desert and Desertification, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Wei Zhang
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering of Gansu Province, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Key Laboratory of Desert and Desertification, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Guangxiu Liu
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering of Gansu Province, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Key Laboratory of Desert and Desertification, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China.
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Wei Z, Sixi Z, Xiuqing Y, Guodong X, Baichun W, Baojing G. Arbuscular mycorrhizal fungi alter rhizosphere bacterial community characteristics to improve Cr tolerance of Acorus calamus. Ecotoxicol Environ Saf 2023; 253:114652. [PMID: 36822059 DOI: 10.1016/j.ecoenv.2023.114652] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Revised: 02/06/2023] [Accepted: 02/12/2023] [Indexed: 06/18/2023]
Abstract
Arbuscular mycorrhizal fungi (AMF) can improve plant tolerance to heavy metal stress in terrestrial ecosystems. However, in wetland ecosystems, AMF can improve the tolerance of wetland plants to heavy metals by changing the structure and composition of rhizosphere bacterial communities, which is still rarely studied. In this study, we investigated the effects of AMF on the structure and composition of bacterial communities in the rhizosphere of plants under different chromium concentrations. The results showed that Cr(Ⅵ) concentration in Acorus calamus. rhizosphere soil decreased by 12.6 % (5.6-21.7 %) on average after AMF inoculation, At the same time, it promoted the uptake of nutrients by A. calamus and increased soil carbon input. In addition, Cr stress decreased the bacterial community diversity and abundance index by 9.8 % (1.6-18.1 %) and 24.5 % (17.3-27.6 %) on average. On the contrary, the rhizosphere soil bacterial diversity and abundance index increased by 7.3 % (2.2-19.1 %) and 13.9 % (6.0-20.9 %) on average after AMF inoculation. Moreover, compared with the non-inoculated AMF group, the bacterial community structure of A. calamus rhizosphere changed by 24.6 % under Cr stress, The common number of species increased by 6.4 %. In addition, after inoculation of AMF significantly promote the growth of a large number of bacteria related to organic degradation, plant growth, and oxidative stress, increased soil carbon input improved the soil microenvironment. Meanwhile, After AMF inoculation, the Number of edges, Number of Nodes, Average degree, and Average Path length in the symbiotic network of rhizosphere soil bacterial community increased by 34.6 %, 10 %, 44.3 %, and 26.4 %, respectively. Therefore, it offers a possibility that AMF can enhance the tolerance of wetland plants to soil Cr pollution by improving the structure and composition of bacterial communities in the rhizosphere soils of wetland plants, which provide a basis for wetland plants to repair soil Cr pollution.
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Affiliation(s)
- Zhao Wei
- College of Eco-environment Engineering, Guizhou Minzu University, The Karst Environmental Geological Hazard Prevention of Key Laboratory of State Ethnic Affairs Commission, Guiyang 550025, China
| | - Zhu Sixi
- College of Eco-environment Engineering, Guizhou Minzu University, The Karst Environmental Geological Hazard Prevention of Key Laboratory of State Ethnic Affairs Commission, Guiyang 550025, China.
| | - Yang Xiuqing
- College of Eco-environment Engineering, Guizhou Minzu University, The Karst Environmental Geological Hazard Prevention of Key Laboratory of State Ethnic Affairs Commission, Guiyang 550025, China
| | - Xia Guodong
- College of Eco-environment Engineering, Guizhou Minzu University, The Karst Environmental Geological Hazard Prevention of Key Laboratory of State Ethnic Affairs Commission, Guiyang 550025, China
| | - Wang Baichun
- College of Eco-environment Engineering, Guizhou Minzu University, The Karst Environmental Geological Hazard Prevention of Key Laboratory of State Ethnic Affairs Commission, Guiyang 550025, China
| | - Gu Baojing
- College of Environment and Resources Science, Zhejiang University, Hangzhou 310058, China.
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Zhu Y, Lv X, Song J, Li W, Wang H. Application of cotton straw biochar and compound Bacillus biofertilizer decrease the bioavailability of soil cd through impacting soil bacteria. BMC Microbiol 2022; 22:35. [PMID: 35081910 PMCID: PMC8790908 DOI: 10.1186/s12866-022-02445-w] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Accepted: 01/10/2022] [Indexed: 11/19/2022] Open
Abstract
Background Cd seriously threatens soil environment, remedying Cd in farmland and clearing the response of soil environment to modifiers in Cd-contaminated soils is necessary. In this study, the effects of cotton straw biochar and compound Bacillus biofertilizer used as modifiers on the biochemical properties, enzyme activity, and microbial diversity in Cd-contaminated soils (1, 2, and 4 mg·kg−1) were investigated. Results The results showed that both cotton straw biochar and compound Bacillus biofertilizer could improve the soil chemical characteristics, including the increase of soil C/N ratio, electrical conductance (EC) and pH, and the most important decrease of soil available Cd content by 60.24% and 74.34%, respectively (P < 0.05). On the other hand, adding cotton straw biochar and compound Bacillus biofertilizer in Cd stressed soil also improved soil biological characteristics. Among them, cotton straw biochar mainly through increasing soil alkaline phosphatase activity and improve bacteria abundance, compound Bacillus biofertilizer by increasing soil invertase, alkaline phosphatase, catalase, and urease activity increased bacterial community diversity. On the whole, the decrease of soil available Cd was mainly caused by the increase of soil pH, C/N, urease and alkaline phosphatase activities, and the relative abundance of Acidobacteria and Proteobacteria. Conclusions In summary, the applications of cotton straw biochar and compound Bacillus biofertilizer could decrease soil available Cd concentration, increase soil bacterial community diversity and functions metabolism, and reduce the damage of Cd stress, compared with cotton straw biochar, compound Bacillus biofertilizer was more effective in immobilizing Cd and improving soil environmental quality.
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Affiliation(s)
- Yongqi Zhu
- Agricultural College, Shihezi University, 832003, Shihezi, Xinjiang, P. R. China
| | - Xin Lv
- Agricultural College, Shihezi University, 832003, Shihezi, Xinjiang, P. R. China
| | - Jianghui Song
- Agricultural College, Shihezi University, 832003, Shihezi, Xinjiang, P. R. China
| | - Weidi Li
- Agricultural College, Shihezi University, 832003, Shihezi, Xinjiang, P. R. China
| | - Haijiang Wang
- Agricultural College, Shihezi University, 832003, Shihezi, Xinjiang, P. R. China.
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Yan S, Yang J, Zhou S, Yan Y, Tang X, Ma Y, Hu H, Ye W. Biological soil crusts alleviate the stress of arsenic on rice germination and the underlying immobilization mechanisms. Ecotoxicol Environ Saf 2021; 227:112839. [PMID: 34634600 DOI: 10.1016/j.ecoenv.2021.112839] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2021] [Revised: 09/22/2021] [Accepted: 09/26/2021] [Indexed: 06/13/2023]
Abstract
The high concentration of arsenic (As) in paddy soil has seriously threatened the growth of rice and human food safety. Biological soil crusts (BSC), which are ubiquitous in paddy fields, have been shown a high ability to capture trace metal elements. In the present study, we investigated the effectiveness and mechanism of BSC for immobilizing As, and tested their potential to alleviate the stress of As on rice germination. It is found that BSC can remove 77.8% of arsenic in solution with 3.5 mg L-1 initial As concentration. The As content in BSC reached 514.5 mg kg-1 after 216 h exposure, and the entrapped As was mainly distributed in BSC as a non-EDTA-exchangeable fraction, which might be intracellularly accumulated. Proteobacteria and Bacteroidetes were the dominant phyla in BSC after being exposed to As, playing a significant role in tolerating As and As biogeochemical cycling. The presence of BSC notably promoted the germination rate (18.3%) and dry biomass (103.4%) of rice seeds under 3.5 mg L-1 As stress while reducing the As content in plant roots (8.2-34.3%) and shoots (8.7-47.6%). These findings demonstrate that BSC have a great entrapping effect on As and highlight the importance of BSC in alleviating the stress on rice germination by As, providing a potential nature-based and low-cost strategy to decontaminate paddy fields polluted with As.
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Affiliation(s)
- Shiwei Yan
- Anhui Province Key Laboratory of Farmland Ecological Conservation and Pollution Prevention, School of Resources and Environment, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, Anhui, PR China
| | - Jianhao Yang
- Anhui Province Key Laboratory of Farmland Ecological Conservation and Pollution Prevention, School of Resources and Environment, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, Anhui, PR China
| | - Song Zhou
- Anhui Province Key Laboratory of Farmland Ecological Conservation and Pollution Prevention, School of Resources and Environment, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, Anhui, PR China
| | - Yuetong Yan
- Anhui Province Key Laboratory of Farmland Ecological Conservation and Pollution Prevention, School of Resources and Environment, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, Anhui, PR China
| | - Xianjin Tang
- Key Laboratory of Environment Remediation and Ecological Health (Zhejiang University), Ministry of Education, 310058, PR China
| | - Youhua Ma
- Anhui Province Key Laboratory of Farmland Ecological Conservation and Pollution Prevention, School of Resources and Environment, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, Anhui, PR China
| | - Hongxiang Hu
- Anhui Province Key Laboratory of Farmland Ecological Conservation and Pollution Prevention, School of Resources and Environment, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, Anhui, PR China.
| | - Wenling Ye
- Anhui Province Key Laboratory of Farmland Ecological Conservation and Pollution Prevention, School of Resources and Environment, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, Anhui, PR China; Key Laboratory of Environment Remediation and Ecological Health (Zhejiang University), Ministry of Education, 310058, PR China.
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Liyai R, Kimita G, Masakhwe C, Abuom D, Mutai B, Onyango DM, Waitumbi J. The spleen bacteriome of wild rodents and shrews from Marigat, Baringo County, Kenya. PeerJ 2021; 9:e12067. [PMID: 34557350 PMCID: PMC8418798 DOI: 10.7717/peerj.12067] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2020] [Accepted: 08/05/2021] [Indexed: 11/20/2022] Open
Abstract
BACKGROUND There is a global increase in reports of emerging diseases, some of which have emerged as spillover events from wild animals. The spleen is a major phagocytic organ and can therefore be probed for systemic microbiome. This study assessed bacterial diversity in the spleen of wild caught small mammals so as to evaluate their utility as surveillance tools for monitoring bacteria in an ecosystem shared with humans. METHODS Fifty-four small mammals (rodents and shrews) were trapped from different sites in Marigat, Baringo County, Kenya. To characterize their bacteriome, DNA was extracted from their spleens and the V3-V4 regions of the 16S rRNA amplified and then sequenced on Illumina MiSeq. A non-target control sample was used to track laboratory contaminants. Sequence data was analyzed with Mothur v1.35, and taxomy determined using the SILVA database. The Shannon diversity index was used to estimate bacterial diversity in each animal and then aggregated to genus level before computing the means. Animal species within the rodents and shrews were identified by amplification of mitochondrial cytochrome b (cytb) gene followed by Sanger sequencing. CLC workbench was used to assemble the cytb gene sequences, after which their phylogenetic placements were determined by querying them against the GenBank nucleotide database. RESULTS cytb gene sequences were generated for 49/54 mammalian samples: 38 rodents (Rodentia) and 11 shrews (Eulipotyphyla). Within the order Rodentia, 21 Acomys, eight Mastomys, six Arvicanthis and three Rattus were identified. In the order Eulipotyphyla, 11 Crucidura were identified. Bacteria characterization revealed 17 phyla that grouped into 182 genera. Of the phyla, Proteobacteria was the most abundant (67.9%). Other phyla included Actinobacteria (16.5%), Firmicutes (5.5%), Chlamydiae (3.8%), Chloroflexi (2.6%) and Bacteroidetes (1.3%) among others. Of the potentially pathogenic bacteria, Bartonella was the most abundant (45.6%), followed by Anaplasma (8.0%), Methylobacterium (3.5%), Delftia (3.8%), Coxiella (2.6%), Bradyrhizobium (1.6%) and Acinetobacter (1.1%). Other less abundant (<1%) and potentially pathogenic included Ehrlichia, Rickettsia, Leptospira, Borrelia, Brucella, Chlamydia and Streptococcus. By Shannon diversity index, Acomys spleens carried more diverse bacteria (mean Shannon diversity index of 2.86, p = 0.008) compared to 1.77 for Crocidura, 1.44 for Rattus, 1.40 for Arvicathis and 0.60 for Mastomys. CONCLUSION This study examined systemic bacteria that are filtered by the spleen and the findings underscore the utility of 16S rRNA deep sequencing in characterizing complex microbiota that are potentially relevant to one health issues. An inherent problem with the V3-V4 region of 16S rRNA is the inability to classify bacteria reliably beyond the genera. Future studies should utilize the newer long read methods of 16S rRNA analysis that can delimit the species composition.
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Affiliation(s)
- Rehema Liyai
- Department of Zoology, Maseno University College, Kisumu, Kenya
- Basic Science Laboratory, United States Army Medical Research Directorate-Africa, Kisumu, Kenya
| | - Gathii Kimita
- Basic Science Laboratory, United States Army Medical Research Directorate-Africa, Kisumu, Kenya
| | - Clement Masakhwe
- Basic Science Laboratory, United States Army Medical Research Directorate-Africa, Kisumu, Kenya
| | - David Abuom
- Entomology Section, United States Medical Research Directorate-Africa, Kisumu, Kenya
| | - Beth Mutai
- Basic Science Laboratory, United States Army Medical Research Directorate-Africa, Kisumu, Kenya
| | | | - John Waitumbi
- Basic Science Laboratory, United States Army Medical Research Directorate-Africa, Kisumu, Kenya
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Bi X, Dai W, Wang X, Dong S, Zhang S, Zhang D, Shi H. Effects of Bacillus subtilis on the growth, colony maintenance, and attached bacterial community composition of colonial cyanobacteria. Environ Sci Pollut Res Int 2019; 26:14977-14987. [PMID: 30919182 DOI: 10.1007/s11356-019-04902-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2018] [Accepted: 03/18/2019] [Indexed: 06/09/2023]
Abstract
In freshwater aquaculture ponds, application of algicidal Bacillus is a promising way in the control of cyanobacterial blooms. To best understand Bacillus algicidal characters and mechanisms in the field, different-sized colonial cyanobacteria were isolated from an aquaculture pond, and the effects of B. subtilis on their growth, colony maintenance, and colony-attached bacterial community composition were investigated. The results showed that B. subtilis could inhibit the growth of colonial cyanobacteria. Bigger-sized colonies isolated from the field could spontaneously disintegrate into smaller-sized colonies in the laboratory. Algicidal B. subtilis could accelerate the disintegration of colonies and decrease colony size. B. subtilis not only decreased the colony-attached bacterial community diversity but also changed its composition. B. subtilis increased the relative abundances of some attached bacterial genera, including Pseudomonas, Shewanella, Bacillus, Shinella, Rhizobium, and Ensifer. These bacteria with algicidal, microcystin-degrading, and flocculating activities might be an important contributor to algicidal effects of B. subtilis on colonial cyanobacteria.
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Affiliation(s)
- Xiangdong Bi
- Key Laboratory of Aquatic-Ecology and Aquaculture of Tianjin, Department of Fisheries Sciences, Tianjin Agricultural University, Jinjing Road No.22, Xiqing District, Tianjin, 300384, China.
| | - Wei Dai
- Key Laboratory of Aquatic-Ecology and Aquaculture of Tianjin, Department of Fisheries Sciences, Tianjin Agricultural University, Jinjing Road No.22, Xiqing District, Tianjin, 300384, China
| | - Xueying Wang
- Key Laboratory of Aquatic-Ecology and Aquaculture of Tianjin, Department of Fisheries Sciences, Tianjin Agricultural University, Jinjing Road No.22, Xiqing District, Tianjin, 300384, China
| | - Shaojie Dong
- Key Laboratory of Aquatic-Ecology and Aquaculture of Tianjin, Department of Fisheries Sciences, Tianjin Agricultural University, Jinjing Road No.22, Xiqing District, Tianjin, 300384, China
| | - Shulin Zhang
- Key Laboratory of Aquatic-Ecology and Aquaculture of Tianjin, Department of Fisheries Sciences, Tianjin Agricultural University, Jinjing Road No.22, Xiqing District, Tianjin, 300384, China
| | - Dajuan Zhang
- Key Laboratory of Aquatic-Ecology and Aquaculture of Tianjin, Department of Fisheries Sciences, Tianjin Agricultural University, Jinjing Road No.22, Xiqing District, Tianjin, 300384, China
| | - Hongyue Shi
- Key Laboratory of Aquatic-Ecology and Aquaculture of Tianjin, Department of Fisheries Sciences, Tianjin Agricultural University, Jinjing Road No.22, Xiqing District, Tianjin, 300384, China
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Xu P, Lai C, Zeng G, Huang D, Chen M, Song B, Peng X, Wan J, Hu L, Duan A, Tang W. Enhanced bioremediation of 4-nonylphenol and cadmium co-contaminated sediment by composting with Phanerochaete chrysosporium inocula. Bioresour Technol 2018; 250:625-634. [PMID: 29220806 DOI: 10.1016/j.biortech.2017.11.069] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2017] [Revised: 11/20/2017] [Accepted: 11/22/2017] [Indexed: 06/07/2023]
Abstract
Composting is identified as an effective approach for solid waste disposal. The bioremediation of 4-nonylphenol (4NP) and cadmium (Cd) co-contaminated sediment was investigated by composting with Phanerochaete chrysosporium (P. chrysosporium) inocula. P. chrysosporium inocula and proper C/N ratios (25.51) accelerated the composting process accompanied with faster total organic carbon loss, 4NP degradation and Cd passivation. Microbiological analysis demonstrated that elevated activities of lignocellulolytic enzymes and sediment enzymes was conducive to organic chemical transformation. Bacterial community diversity results illustrated that Firmicutes and Proteobacteria were predominant species during the whole composting process. Aerobic cellulolytic bacteria and organic degrading species played significant roles. Toxicity characteristic leaching procedure (TCLP) extraction and germination indices results indicated the efficient detoxification of 4NP and Cd co-contaminated sediment after 120 days of composting. Overall, results demonstrated that P. chrysosporium enhanced composting was available for the bioremediation of 4NP and Cd co-contaminated sediment.
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Affiliation(s)
- Piao Xu
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Ministry of Education, Hunan University, Changsha 410082, PR China
| | - Cui Lai
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Ministry of Education, Hunan University, Changsha 410082, PR China
| | - Guangming Zeng
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Ministry of Education, Hunan University, Changsha 410082, PR China.
| | - Danlian Huang
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Ministry of Education, Hunan University, Changsha 410082, PR China
| | - Ming Chen
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Ministry of Education, Hunan University, Changsha 410082, PR China
| | - Biao Song
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Ministry of Education, Hunan University, Changsha 410082, PR China
| | - Xin Peng
- College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha 410081, PR China
| | - Jia Wan
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Ministry of Education, Hunan University, Changsha 410082, PR China
| | - Liang Hu
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Ministry of Education, Hunan University, Changsha 410082, PR China
| | - Abing Duan
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Ministry of Education, Hunan University, Changsha 410082, PR China
| | - Wangwang Tang
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Ministry of Education, Hunan University, Changsha 410082, PR China
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10
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Wilantho A, Deekaew P, Srisuttiyakorn C, Tongsima S, Somboonna N. Diversity of bacterial communities on the facial skin of different age-group Thai males. PeerJ 2017; 5:e4084. [PMID: 29177119 PMCID: PMC5701550 DOI: 10.7717/peerj.4084] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2017] [Accepted: 11/02/2017] [Indexed: 12/20/2022] Open
Abstract
Background Skin microbiome varies from person to person due to a combination of various factors, including age, biogeography, sex, cosmetics and genetics. Many skin disorders appear to be related to the resident microflora, yet databases of facial skin microbiome of many biogeographies, including Thai, are limited. Methods Metagenomics derived B-RISA and 16S rRNA gene sequencing was utilized to identify the culture-independent bacterial diversity on Thai male faces (cheek and forehead areas). Skin samples were categorized (grouped) into (i) normal (teenage.hea) and (ii) acne-prone (teenage.acn) young adults, and normal (iii) middle-aged (middle.hea) and (iv) elderly (elderly.hea) adults. Results The 16S rRNA gene sequencing was successful as the sequencing depth had an estimated >98% genus coverage of the true community. The major diversity was found between the young and elderly adults in both cheek and forehead areas, followed by that between normal and acne young adults. Detection of representative characteristics indicated that bacteria from the order Rhizobiales, genera Sphingomonas and Pseudoalteromonas, distinguished the elderly.hea microbiota, along the clinical features of wrinkles and pores. Prediction of the metabolic potential revealed reduced metabolic pathways involved in replication and repair, nucleotide metabolism and genetic translation in the elderly.hea compared with that in the teenage.hea. For young adults, some unique compositions such as abundance of Propionibacterium acnes and Staphylococcus epidermidis, with a minor diversity between normal and acne skins, were detected. The metabolic potentials of the acne vs. normal young adults showed that teenage.acn was low in many cellular processes (e.g., cell motility and environmental adaptation), but high in carbohydrate metabolism, which could support acne growth. Moreover, comparison with the age-matched males from the US (Boulder, Colorado) to gain insight into the diversity across national biogeography, revealed differences in the distribution pattern of species, although common bacteria were present in both biogeographical samples. Furthermore, B-RISA served as a crosscheck result to the 16S rRNA gene sequencing (i.e., differences between teenage and elderly microbiota). Conclusions This study revealed and compared the microbial diversity on different aged Thai male faces, and included analyses for representing the bacterial flora, the clinical skin characteristics, and comparison with the US age-matched. The results represent the first skin microbiota of Thai males, and helps the design of a large-scale skin microbiome study of Thais. The findings of the diversity among ages, skin type and national biogeography supported the importance of these traits in the skin microbiome and in developing a safe and sustainable treatment for acne and aging skin diseases.
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Affiliation(s)
- Alisa Wilantho
- Genome Technology Research Unit, National Center for Genetic Engineering and Biotechnology, Pathum Thani, Thailand
| | - Pamornya Deekaew
- Department of Microbiology, Faculty of Science, Chulalongkorn University, Bangkok, Thailand
| | - Chutika Srisuttiyakorn
- Division of Dermatology, Department of Medicine, Phramongkutklao Hospital, Bangkok, Thailand
| | - Sissades Tongsima
- Genome Technology Research Unit, National Center for Genetic Engineering and Biotechnology, Pathum Thani, Thailand
| | - Naraporn Somboonna
- Department of Microbiology, Faculty of Science, Chulalongkorn University, Bangkok, Thailand
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11
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Ren TT, Li XY, Wang Y, Zou YD, Liao XD, Liang JB, Wu YB. Effect of different sulfadimidine addition methods on its degradation behaviour in swine manure. Environ Sci Pollut Res Int 2017; 24:7253-7263. [PMID: 28101710 DOI: 10.1007/s11356-016-8252-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2016] [Accepted: 12/12/2016] [Indexed: 06/06/2023]
Abstract
Sulfadimidine (SM2) is commonly used in the swine industry and enters the environment via faeces. In recent years, advances in the ecotoxicology of SM2 have become a popular research interest with two common research methods including swine manure collection from swine fed with a diet containing SM2 and directly adding SM2. The purpose of this experiment was to compare SM2 degradation behaviour in pig manure with two different SM2 addition methods. The results showed that the degradation half-lives of SM2 in manure from SM2-fed swine treatment were 33.2 and 32.0 days at the initial addition level of SM2 at 32.1 and 64.3 mg/kg, respectively. This was significantly longer than that in manure directly adding SM2 treatment with the half-lives of 21.4 and 14.8 days. The metabolite of SM2 N4-acetyl-sulfamethazine occurred in manure from SM2-fed swine treatment but was not detected in directly adding SM2 treatment. The pH in manure from SM2-fed swine treatment was significantly lower than that in directly adding SM2 treatment, but the values of organic carbon, total nitrogen, and electrical conductivity in manure from SM2-fed swine treatment were significantly higher than those in manure directly adding SM2 treatment. Meanwhile, although the copy number of bacteria had no significant difference between two treatments, there was a significant difference in bacteria diversity. Results of the present study demonstrated that the presence of the metabolites, chemical property, and microbial diversity might be the reason for different SM2 degradation behaviours on different addition methods. Thus, the method using manure with SM2 collected from swine could obtain more accurate results for the ecotoxicological study of SM2.
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Affiliation(s)
- Tian-Tian Ren
- College of Animal Science, National Engineering Research Center for Breeding Swine Industry, South China Agricultural University, Guangzhou, 510642, China
| | - Xiao-Yang Li
- College of Animal Science, National Engineering Research Center for Breeding Swine Industry, South China Agricultural University, Guangzhou, 510642, China
| | - Yan Wang
- College of Animal Science, National Engineering Research Center for Breeding Swine Industry, South China Agricultural University, Guangzhou, 510642, China
- Ministry of Agriculture Key Laboratory of Tropical Agricultural Environment, South China Agricultural University, Guangzhou, 510642, China
| | - Yong-De Zou
- Nanhai Entry-Exit Inspection and Quarantine Bureau, Foshan, 528200, China
| | - Xin-Di Liao
- College of Animal Science, National Engineering Research Center for Breeding Swine Industry, South China Agricultural University, Guangzhou, 510642, China
- Ministry of Agriculture Key Laboratory of Tropical Agricultural Environment, South China Agricultural University, Guangzhou, 510642, China
| | - Juan-Boo Liang
- Institute of Tropical Agriculture, Universiti Putra Malaysia, 43400, Serdang, Malaysia
| | - Yin-Bao Wu
- College of Animal Science, National Engineering Research Center for Breeding Swine Industry, South China Agricultural University, Guangzhou, 510642, China.
- Ministry of Agriculture Key Laboratory of Tropical Agricultural Environment, South China Agricultural University, Guangzhou, 510642, China.
- Generic Technique Inovation Team Construction of Modern Agriculture of Guangdong Province, Guangzhou, 510642, China.
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12
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Modenutti BE, Balseiro EG, Bastidas Navarro MA, Lee ZM, Souza MS, Corman JR, Elser JJ. Effects of Volcanic Pumice Inputs on Microbial Community Composition and Dissolved C/P Ratios in Lake Waters: an Experimental Approach. Microb Ecol 2016; 71:18-28. [PMID: 26563321 DOI: 10.1007/s00248-015-0707-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2015] [Accepted: 11/02/2015] [Indexed: 06/05/2023]
Abstract
Volcanic eruptions discharge massive amounts of ash and pumice that decrease light penetration in lakes and lead to concomitant increases in phosphorus (P) concentrations and shifts in soluble C/P ratios. The consequences of these sudden changes for bacteria community composition, metabolism, and enzymatic activity remain unclear, especially for the dynamic period immediately after pumice deposition. Thus, the main aim of our study was to determine how ambient bacterial communities respond to pumice inputs in lakes that differ in dissolved organic carbon (DOC) and P concentrations and to what extent these responses are moderated by substrate C/P stoichiometry. We performed an outdoor experiment with natural lake water from two lakes that differed in dissolved organic carbon (DOC) concentration. We measured nutrient concentrations, alkaline phosphatase activity (APA), and DOC consumption rates and assessed different components of bacterial community structure using next-generation sequencing of the 16S rRNA gene. Pumice inputs caused a decrease in the C/P ratio of dissolved resources, a decrease in APA, and an increase in DOC consumption, indicating reduced P limitation. These changes in bacteria metabolism were coupled with modifications in the assemblage composition and an increase in diversity, with increases in bacterial taxa associated with biofilm and sediments, in predatory bacteria, and in bacteria with gliding motility. Our results confirm that volcanic eruptions have the potential to alter nutrient partitioning and light penetration in receiving waterways which can have dramatic impacts on microbial community dynamics.
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Affiliation(s)
- B E Modenutti
- Laboratorio de Limnología, INIBIOMA, CONICET-University of Comahue, Quintral 1250, 8400, Bariloche, Argentina.
| | - E G Balseiro
- Laboratorio de Limnología, INIBIOMA, CONICET-University of Comahue, Quintral 1250, 8400, Bariloche, Argentina
| | - M A Bastidas Navarro
- Laboratorio de Limnología, INIBIOMA, CONICET-University of Comahue, Quintral 1250, 8400, Bariloche, Argentina
| | - Z M Lee
- School of Life Sciences, Arizona State University, Tempe, AZ, 85287, USA
| | - M S Souza
- Laboratorio de Limnología, INIBIOMA, CONICET-University of Comahue, Quintral 1250, 8400, Bariloche, Argentina
| | - J R Corman
- School of Life Sciences, Arizona State University, Tempe, AZ, 85287, USA
- Center for Limnology, University of Wisconsin-Madison, Madison, WI, 53706, USA
| | - J J Elser
- School of Life Sciences, Arizona State University, Tempe, AZ, 85287, USA
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13
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Ben Said O, Louati H, Soltani A, Preud'homme H, Cravo-Laureau C, Got P, Pringault O, Aissa P, Duran R. Changes of benthic bacteria and meiofauna assemblages during bio-treatments of anthracene-contaminated sediments from Bizerta lagoon (Tunisia). Environ Sci Pollut Res Int 2015; 22:15319-15331. [PMID: 25618309 DOI: 10.1007/s11356-015-4105-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2014] [Accepted: 01/11/2015] [Indexed: 06/04/2023]
Abstract
Sediments from Bizerta lagoon were used in an experimental microcosm setup involving three scenarios for the bioremediation of anthracene-polluted sediments, namely bioaugmentation, biostimulation, and a combination of both bioaugmentation and biostimulation. In order to investigate the effect of the biotreatments on the benthic biosphere, 16S rRNA gene-based T-RFLP bacterial community structure and the abundance and diversity of the meiofauna were determined throughout the experiment period. Addition of fresh anthracene drastically reduced the benthic bacterial and meiofaunal abundances. The treatment combining biostimulation and bioaugmentation was most efficient in eliminating anthracene, resulting in a less toxic sedimentary environment, which restored meiofaunal abundance and diversity. Furthermore, canonical correspondence analysis showed that the biostimulation treatment promoted a bacterial community favorable to the development of nematodes while the treatment combining biostimulation and bioaugmentation resulted in a bacterial community that advantaged the development of the other meiofauna taxa (copepods, oligochaetes, polychaetes, and other) restoring thus the meiofaunal structure. The results highlight the importance to take into account the bacteria/meiofauna interactions during the implementation of bioremediation treatment.
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Affiliation(s)
- Olfa Ben Said
- Laboratoire de Biosurveillance de l'Environnement, Faculté des Sciences de Bizerte, 7021, Zarzouna, Tunisia.
- Equipe Environnement et Microbiologie-MELODY Group-UMR CNRS IPREM 5254-IBEAS, Université de Pau et des Pays de l'Adour, Pau, France.
- Faculty of Sciences of Bizerte, Laboratory of Environment Biomonitoring, Coastal Ecology and Ecotoxicology Unit, University of Carthage, 7021, Zarzouna, Tunisia.
| | - Hela Louati
- Laboratoire de Biosurveillance de l'Environnement, Faculté des Sciences de Bizerte, 7021, Zarzouna, Tunisia
- Laboratoire Ecosystèmes Marins Côtiers, UMR 5119 CNRS-UM2-IFREMER-IRD-ECOSYM, Université Montpellier 2, Montpellier, France
| | - Amel Soltani
- Laboratoire de Biosurveillance de l'Environnement, Faculté des Sciences de Bizerte, 7021, Zarzouna, Tunisia
- Equipe Environnement et Microbiologie-MELODY Group-UMR CNRS IPREM 5254-IBEAS, Université de Pau et des Pays de l'Adour, Pau, France
| | - Hugues Preud'homme
- Laboratoire Chimie Analytique BioInorganique Environnement-UMR CNRS IPREM 5254-Helioparc, Université de Pau et des Pays de l'Adour, Pau, France
| | - Cristiana Cravo-Laureau
- Equipe Environnement et Microbiologie-MELODY Group-UMR CNRS IPREM 5254-IBEAS, Université de Pau et des Pays de l'Adour, Pau, France
| | - Patrice Got
- Laboratoire Ecosystèmes Marins Côtiers, UMR 5119 CNRS-UM2-IFREMER-IRD-ECOSYM, Université Montpellier 2, Montpellier, France
| | - Olivier Pringault
- Laboratoire Ecosystèmes Marins Côtiers, UMR 5119 CNRS-UM2-IFREMER-IRD-ECOSYM, Université Montpellier 2, Montpellier, France
| | - Patricia Aissa
- Laboratoire de Biosurveillance de l'Environnement, Faculté des Sciences de Bizerte, 7021, Zarzouna, Tunisia
| | - Robert Duran
- Equipe Environnement et Microbiologie-MELODY Group-UMR CNRS IPREM 5254-IBEAS, Université de Pau et des Pays de l'Adour, Pau, France
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14
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Duran R, Bielen A, Paradžik T, Gassie C, Pustijanac E, Cagnon C, Hamer B, Vujaklija D. Exploring Actinobacteria assemblages in coastal marine sediments under contrasted Human influences in the West Istria Sea, Croatia. Environ Sci Pollut Res Int 2015; 22:15215-29. [PMID: 25712885 DOI: 10.1007/s11356-015-4240-1] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2014] [Accepted: 02/13/2015] [Indexed: 05/27/2023]
Abstract
The exploration of marine Actinobacteria has as major challenge to answer basic questions of microbial ecology that, in turn, will provide useful information to exploit Actinobacteria metabolisms in biotechnological processes. The ecological functions performed by Actinobacteria in marine sediments are still unclear and belongs to the most burning basic questions. The comparison of Actinobacteria communities inhabiting marine sediments that are under the influence of different contamination types will provide valuable information in the adaptation capacities of Actinobacteria to colonize specific ecological niche. In the present study, the characterization of different Actinobacteria assemblages according to contamination type revealed the ecological importance of Actinobacteria for maintaining both general biogeochemical functions through a "core" Actinobacteria community and specific roles associated with the presence of contaminants. Indeed, the results allowed to distinguish Actinobacteria genera and species operational taxonomic units (OTUs) able to cope with the presence of either (i) As, (ii) metals Ni, Fe, V, Cr, and Mn, or (iii) polycyclic aromatic hydrocarbons (PAHs) and toxic metals (Hg, Cd, Cu, Pb, and Zn). Such observations highlighted the metabolic capacities of Actinobacteria and their potential that should be taken into consideration and advantage during the implementation of bioremediation processes in marine ecosystems.
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Affiliation(s)
- Robert Duran
- Equipe Environnement et Microbiologie, MELODY group, Université de Pau et des Pays de l'Adour, IPREM UMR CNRS 5254, BP 1155, 64013, Pau Cedex, France.
- Université de Pau et des Pays de l'Adour, Bâtiment IBEAS, BP1155, 64013, Pau Cedex, France.
| | - Ana Bielen
- Division of Molecular Biology, Institute Ruđer Bošković, Bijenička 54, 10000, Zagreb, Croatia
| | - Tina Paradžik
- Division of Molecular Biology, Institute Ruđer Bošković, Bijenička 54, 10000, Zagreb, Croatia
| | - Claire Gassie
- Equipe Environnement et Microbiologie, MELODY group, Université de Pau et des Pays de l'Adour, IPREM UMR CNRS 5254, BP 1155, 64013, Pau Cedex, France
| | - Emina Pustijanac
- Juraj Dobrila University of Pula, Zagrebačka 30, 52100, Pula, Croatia
| | - Christine Cagnon
- Equipe Environnement et Microbiologie, MELODY group, Université de Pau et des Pays de l'Adour, IPREM UMR CNRS 5254, BP 1155, 64013, Pau Cedex, France
| | - Bojan Hamer
- Center for Marine Research, Ruđer Bošković Institute, Giordano Paliaga 5, 52210, Rovinj, Croatia
| | - Dušica Vujaklija
- Division of Molecular Biology, Institute Ruđer Bošković, Bijenička 54, 10000, Zagreb, Croatia
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