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Jiang W, Ma Q. English teaching system design based on ID3 algorithm and node optimization. PeerJ Comput Sci 2023; 9:e1486. [PMID: 37705665 PMCID: PMC10495945 DOI: 10.7717/peerj-cs.1486] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2023] [Accepted: 06/16/2023] [Indexed: 09/15/2023]
Abstract
In order to optimize the integration of English multimedia resources and achieve the goal of sharing English teaching resources in education, this article reconstructs the traditional college English curriculum system. It divides professional English into learning modules according to different majors integrating public health teaching resources. How optimize the integration of English multimedia resources and achieving the goal of sharing English teaching resources (ETR) is the main direction of English teaching reform during the current COVID-19 pandemic. An English multimedia teaching resource-sharing platform is designed to extract feature items from multimedia teaching resources using the ID3 information gain method and construct a decision tree for resource push. In resource sharing, a structured peer-to-peer network is used to manage nodes, query location and share multimedia teaching resources. The optimal gateway node is selected by calculating the distance between each gateway node and the fixed node. Finally, a collaborative filtering (CF) algorithm recommends Multimedia ETR to different users. The simulation results show that the platform can improve the sharing speed and utilization rate of teaching resources, with maximum throughput reaching 12 Mb/s and achieve accurate recommendations of ETR.
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Affiliation(s)
- Wangmeng Jiang
- Faculty of Humanities and Social Sciences, Beijing University of Technology, Beijing, China
| | - Qiang Ma
- Faculty of Department of Foreign Language and Tourism, Hebei Petroleum University of Technology, Chengde, Hebei, China
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Nkontcheu Kenko DB, Ngameni NT. Assessment of ecotoxicological effects of agrochemicals on bees using the PRIMET model, in the Tiko plain (South-West Cameroon). Heliyon 2022; 8:e09154. [PMID: 35345403 PMCID: PMC8956873 DOI: 10.1016/j.heliyon.2022.e09154] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2021] [Revised: 01/27/2022] [Accepted: 03/16/2022] [Indexed: 11/23/2022] Open
Abstract
Pesticide utilization in agriculture has many harmful effects of non-target organisms. This study assessed pesticide risk to bees using PRIMET (Pesticide Risks in the Tropics to Man, Environment and Trade), a pesticide risk model. Data was collected on pesticide application scheme (active ingredient, crop, dose, number of applications, application interval) and ecotoxicological properties (LD50-Bee). These two groups of variables were introduced one after the other in PRIMET 2.0 to obtain the Predicted Exposure Concentration (PECbee), No Effect Concentration (NECbee) and Exposure Toxicity Ratio (ETRbee = PECbee/NECbee). Eight insecticides (out of 15 assessed) and 1 nematicide (out of 1) posed a Definite Risk to bees with imidacloprid (PEC = 4412 g/ha; ETR = 1.09E+07) at the top position. Six insecticides (out of 16), and 1 nematicide (out of 1) posed a Possible Risk to bees. The insecticide oxamyl (PEC = 2044g/ha, ETR = 87) had the highest ETR in this category, followed by the nematicide ethoprophos (PEC = 5.4E+04 g/ha; ETR = 69). The results of this study revealed that 27 compounds, including 1 insecticide (out of 15), 10 herbicides (out of 10) and 16 fungicides (out of 16) posed No Risk to bees. Herbicides and fungicides appeared “safer” for bees as compared to other pesticide families. The fungicides, mancozeb (PEC = 1 g/ha, ETR = 0.006) and maneb (PEC = 1 g/ha, ETR = 0.006) had the lowest ETR out of all the 43 compounds assessed in the study. Regulation on the importation, distribution and use should be reinforced for very hazardous compounds such as imidacloprid, carbofuran, thiamethoxam and metaldehyde. Substituting the most toxic pesticides with less toxic ones such as novaluron (insecticide), oxadiazon (herbicide), mancozeb (fungicide) and maneb (fungicide) may help to reduce pesticide pressure on the environment.
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Affiliation(s)
- Daniel Brice Nkontcheu Kenko
- Zoology Laboratory, Department of Animal Biology and Conservation, Faculty of Science, University of Buea, P.O. Box 63 Buea, South-West Region, Cameroon.,Biology and Applied Ecology Research Unit, Dschang School of Science and Technology, University of Dschang, P.O. Box 67 Dschang, West Region, Cameroon
| | - Norbert Tchamadeu Ngameni
- Biology and Applied Ecology Research Unit, Dschang School of Science and Technology, University of Dschang, P.O. Box 67 Dschang, West Region, Cameroon
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Zheng J, Zhang TJ, Li BH, Liang WJ, Zhang QL, Cai ML, Peng CL. Strong Response of Stem Photosynthesis to Defoliation in Mikania micrantha Highlights the Contribution of Phenotypic Plasticity to Plant Invasiveness. Front Plant Sci 2021; 12:638796. [PMID: 34025690 PMCID: PMC8131553 DOI: 10.3389/fpls.2021.638796] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/14/2020] [Accepted: 04/13/2021] [Indexed: 06/12/2023]
Abstract
Phenotypic plasticity affords invasive plant species the ability to colonize a wide range of habitats, but physiological plasticity of their stems is seldom recognized. Investigation of the stem plasticity of invasive plant species could lead to a better understanding of their invasiveness. We performed pot experiments involving defoliation treatments and isolated culture experiments to determine whether the invasive species Mikania micrantha exhibits greater plasticity in the stems than do three non-invasive species that co-occur in southern China and then explored the mechanism underlying the modification of its stem photosynthesis. Our results showed that the stems of M. micrantha exhibited higher plasticity in terms of either net or gross photosynthetic rate in response to the defoliation treatment. These effects were positively related to an increased stem elongation rate. The enhancement of stem photosynthesis in M. micrantha resulted from the comprehensive action involving increases in the Chl a/b ratio, D1 protein and stomatal aperture, changes in chloroplast morphology and a decrease in anthocyanins. Increased plasticity of stem photosynthesis may improve the survival of M. micrantha under harsh conditions and allow it to rapidly recover from defoliation injuries. Our results highlight that phenotypic plasticity promotes the invasion success of alien plant invaders.
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Affiliation(s)
- Jin Zheng
- Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, School of Life Sciences, South China Normal University, Guangzhou, China
| | - Tai-Jie Zhang
- Guangdong Provincial Key Laboratory of High Technology for Plant Protection, Institute of Plant Protection, Guangdong Academy of Agricultural Sciences, Guangzhou, China
| | - Bo-Hui Li
- Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, School of Life Sciences, South China Normal University, Guangzhou, China
| | - Wei-Jie Liang
- Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, School of Life Sciences, South China Normal University, Guangzhou, China
| | - Qi-Lei Zhang
- Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, School of Life Sciences, South China Normal University, Guangzhou, China
| | - Min-Ling Cai
- Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, School of Life Sciences, South China Normal University, Guangzhou, China
| | - Chang-Lian Peng
- Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, School of Life Sciences, South China Normal University, Guangzhou, China
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Das A, Basu PS, Kumar M, Ansari J, Shukla A, Thakur S, Singh P, Datta S, Chaturvedi SK, Sheshshayee MS, Bansal KC, Singh NP. Transgenic chickpea (Cicer arietinum L.) harbouring AtDREB1a are physiologically better adapted to water deficit. BMC Plant Biol 2021; 21:39. [PMID: 33430800 PMCID: PMC7802217 DOI: 10.1186/s12870-020-02815-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2020] [Accepted: 12/22/2020] [Indexed: 05/27/2023]
Abstract
BACKGROUND Chickpea (Cicer arietinum L.) is the second most widely grown pulse and drought (limiting water) is one of the major constraints leading to about 40-50% yield losses annually. Dehydration responsive element binding proteins (DREBs) are important plant transcription factors that regulate the expression of many stress-inducible genes and play a critical role in improving the abiotic stress tolerance. Transgenic chickpea lines harbouring transcription factor, Dehydration Responsive Element-Binding protein 1A from Arabidopsis thaliana (AtDREB1a gene) driven by stress inducible promoter rd29a were developed, with the intent of enhancing drought tolerance in chickpea. Performance of the progenies of one transgenic event and control were assessed based on key physiological traits imparting drought tolerance such as plant water relation characteristics, chlorophyll retention, photosynthesis, membrane stability and water use efficiency under water stressed conditions. RESULTS Four transgenic chickpea lines harbouring stress inducible AtDREB1a were generated with transformation efficiency of 0.1%. The integration, transmission and regulated expression were confirmed by Polymerase Chain Reaction (PCR), Southern Blot hybridization and Reverse Transcriptase polymerase chain reaction (RT-PCR), respectively. Transgenic chickpea lines exhibited higher relative water content, longer chlorophyll retention capacity and higher osmotic adjustment under severe drought stress (stress level 4), as compared to control. The enhanced drought tolerance in transgenic chickpea lines were also manifested by undeterred photosynthesis involving enhanced quantum yield of PSII, electron transport rate at saturated irradiance levels and maintaining higher relative water content in leaves under relatively severe soil water deficit. Further, lower values of carbon isotope discrimination in some transgenic chickpea lines indicated higher water use efficiency. Transgenic chickpea lines exhibiting better OA resulted in higher seed yield, with progressive increase in water stress, as compared to control. CONCLUSIONS Based on precise phenotyping, involving non-invasive chlorophyll fluorescence imaging, carbon isotope discrimination, osmotic adjustment, higher chlorophyll retention and membrane stability index, it can be concluded that AtDREB1a transgenic chickpea lines were better adapted to water deficit by modifying important physiological traits. The selected transgenic chickpea event would be a valuable resource that can be used in pre-breeding or directly in varietal development programs for enhanced drought tolerance under parched conditions.
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Affiliation(s)
- Alok Das
- Division of Plant Biotechnology, ICAR-Indian Institute of Pulses Research, Kanpur, 208 024, India.
| | - Partha Sarathi Basu
- Division of Basic Sciences, ICAR-Indian Institute of Pulses Research, Kanpur, 208 024, India
| | - Manoj Kumar
- Division of Plant Biotechnology, ICAR-Indian Institute of Pulses Research, Kanpur, 208 024, India
| | - Jamal Ansari
- Division of Plant Biotechnology, ICAR-Indian Institute of Pulses Research, Kanpur, 208 024, India
| | - Alok Shukla
- Division of Plant Biotechnology, ICAR-Indian Institute of Pulses Research, Kanpur, 208 024, India
| | - Shallu Thakur
- Division of Plant Biotechnology, ICAR-Indian Institute of Pulses Research, Kanpur, 208 024, India
| | - Parul Singh
- Division of Basic Sciences, ICAR-Indian Institute of Pulses Research, Kanpur, 208 024, India
| | - Subhojit Datta
- Division of Plant Biotechnology, ICAR-Indian Institute of Pulses Research, Kanpur, 208 024, India
| | - Sushil Kumar Chaturvedi
- Division of Crop Improvement, ICAR-Indian Institute of Pulses Research, Kanpur, 208 024, India
| | - M S Sheshshayee
- Department of Crop Physiology, University of Agricultural Sciences, GKVK Campus, Bangalore, 560 065, India
| | | | - Narendra Pratap Singh
- Division of Plant Biotechnology, ICAR-Indian Institute of Pulses Research, Kanpur, 208 024, India
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Ko SS, Jhong CM, Shih MC. Blue Light Acclimation Reduces the Photoinhibition of Phalaenopsis aphrodite (Moth Orchid). Int J Mol Sci 2020; 21:ijms21176167. [PMID: 32859101 PMCID: PMC7503704 DOI: 10.3390/ijms21176167] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Revised: 08/24/2020] [Accepted: 08/24/2020] [Indexed: 01/15/2023] Open
Abstract
The moth orchid is an important ornamental crop. It is very sensitive to high light irradiation due to photoinhibition. In this study, young orchid tissue culture seedlings and 2.5” potted plants pretreated under blue light (BL, λmax = 450 nm) at 100 µmol m−2 s−1 for 12 days (BL acclimation) were found to have an increased tolerance to high light irradiation. After BL acclimation, orchids had an increased anthocyanin accumulation, enhanced chloroplast avoidance, and increased chlorophyll fluorescence capacity whenever they were exposed to high light of 1000 μmol m−2 s−1 for two weeks (HL). They had higher Fv/Fm, electron transport rate (ETR), chlorophyll content, catalase activity and sucrose content when compared to the control without BL acclimation. Quantitative reverse transcription polymerase chain reaction (qRT-PCR) showed that transcript levels of phototropins, D1, RbcS, PEPCK, Catalase and SUT2 were upregulated in the BL-acclimated orchids. Consequently, BL acclimation orchids had better growth when compared to the control under long-term high light stress. In summary, this study provides a solution, i.e., BL acclimation, to reduce moth orchid photoinhibition and enhance growth before transplantation of the young tissue culture seedlings and potted plants into greenhouses, where they usually suffer from a high light fluctuation problem.
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Affiliation(s)
- Swee-Suak Ko
- Academia Sinica Biotechnology Center in Southern Taiwan, Tainan 741, Taiwan;
- Agricultural Biotechnology Research Center, Academia Sinica, Taipei 115, Taiwan;
- Correspondence: ; Tel.: +886-6-5056630 (ext. 206); Fax: +886-6-5056631 (ext. 206)
| | - Chung-Min Jhong
- Academia Sinica Biotechnology Center in Southern Taiwan, Tainan 741, Taiwan;
| | - Ming-Che Shih
- Agricultural Biotechnology Research Center, Academia Sinica, Taipei 115, Taiwan;
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McCormick KD, Penrose KJ, Brumme CJ, Harrigan PR, Viana RV, Mellors JW, Parikh UM, Wallis CL. Discordance between Etravirine Phenotype and Genotype-Based Predicted Phenotype for Subtype C HIV-1 from First-Line Antiretroviral Therapy Failures in South Africa. Antimicrob Agents Chemother 2020; 64:e02101-19. [PMID: 32071061 DOI: 10.1128/AAC.02101-19] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2019] [Accepted: 02/12/2020] [Indexed: 12/25/2022] Open
Abstract
Etravirine (ETR) is a nonnucleoside reverse transcriptase inhibitor (NNRTI) used in treatment-experienced individuals. Genotypic resistance test-interpretation systems can predict ETR resistance; however, genotype-based algorithms are derived primarily from HIV-1 subtype B and may not accurately predict resistance in non-B subtypes. The frequency of ETR resistance among recombinant subtype C HIV-1 and the accuracy of genotypic interpretation systems were investigated. HIV-1LAI containing full-length RT from HIV-1 subtype C-positive individuals experiencing virologic failure (>10,000 copies/ml and >1 NNRTI resistance-associated mutation) were phenotyped for ETR susceptibility. Fold change (FC) was calculated against a composite 50% effective concentration (EC50) from treatment-naive individuals and three classifications were assigned: (i) <2.9-FC, susceptible; (ii) ≥2.9- to 10-FC, partially resistant; and (iii) >10-FC, fully resistant. The Stanford HIVdb-v8.4 was used for genotype predictions merging the susceptible/potential low-level and low-level/intermediate groups for 3 × 3 comparison. Fifty-four of a hundred samples had reduced ETR susceptibility (≥2.9-FC). The FC correlated with HIVdb-v8.4 (Spearman's rho = 0.62; P < 0.0001); however, 44% of samples were partially (1 resistance classification difference) and 4% completely discordant (2 resistance classification differences). Of the 34 samples with an FC of >10, 26 were HIVdb-v8.4 classified as low-intermediate resistant. Mutations L100I, Y181C, or M230L were present in 27/34 (79%) of samples with an FC of >10 but only in 2/46 (4%) of samples with an FC of <2.9. No other mutations were associated with ETR resistance. Viruses containing the mutation K65R were associated with reduced ETR susceptibility, but 65R reversions did not increase ETR susceptibility. Therefore, genotypic interpretation systems were found to misclassify ETR susceptibility in HIV-1 subtype C samples. Modifications to genotypic algorithms are needed to improve the prediction of ETR resistance for the HIV-1 subtype C.
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Pourostadi M, Rashedi J, Mahdavi Poor B, Samadi Kafil H, Shirazi S, Asgharzadeh M. Molecular Diversity of Mycobacterium tuberculosis Strains in Northwestern Iran. Jundishapur J Microbiol 2016; 9:e35520. [PMID: 27800145 PMCID: PMC5086081 DOI: 10.5812/jjm.35520] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2015] [Revised: 07/23/2016] [Accepted: 08/07/2016] [Indexed: 11/22/2022] Open
Abstract
Background Years after the development of antituberculosis (TB) drugs, many people continue to suffer from this disease. To control the spread of TB, strains of the Mycobacterium tuberculosis complex need to be determined, and sources of infection must be identified. Such steps should help to prevent transmission of the infection. Objectives The aim of this study was to perform molecular genotyping of isolates of the M. tuberculosis complex obtained from patients in northwestern Iran. Methods One hundred ninety-four culture-positive M. tuberculosis isolates obtained from patients in northwestern Iran were analyzed using the mycobacterial interspersed repetitive unit-exact tandem repeats (MIRU-ETR) method. Results The MIRU-ETR method distinguished 162 different patterns in the 194 isolates, comprising 23 clusters and 139 unique patterns. Its discriminatory power according to the Hunter-Gaston discriminatory index (HGDI) was 0.9978. The largest cluster contained six isolates. Conclusions This research indicated that various strains of M. tuberculosis were responsible for TB and that the majority of cases were due to reactivation.
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Affiliation(s)
- Mahya Pourostadi
- Biotechnology Research Center, Tabriz University of Medical Sciences, Tabriz, IR Iran
| | - Jalil Rashedi
- Tuberculosis and Lung Disease Research Center, Faculty of Paramedicine, Tabriz University of Medical Sciences, Tabriz, IR Iran
- Corresponding author: Jalil Rashedi, Tuberculosis and Lung Disease Research Center, Faculty of Paramedicine, Tabriz University of Medical Sciences, Golgasht Ave., Azadi St., Tabriz, IR Iran. Tel: +98-4133392633, Fax: +98-4133371971, E-mail:
| | - Behroz Mahdavi Poor
- Department of Laboratory Science, Faculty of Paramedicine, Tabriz University of Medical Sciences, Tabriz, IR Iran
- Department of Medical Parasitology, Faculty of Medicine, Tarbiat Modares University, Tehran, IR Iran
| | - Hossein Samadi Kafil
- Drug Applied Research Center, Tabriz University of Medical Sciences, Tabriz, IR Iran
| | - Samaneh Shirazi
- Faculty of Paramedicine, Tabriz University of Medical Sciences, Tabriz, IR Iran
| | - Mohammad Asgharzadeh
- Hematology-Oncology Research Center, Faculty of Paramedicine, Tabriz University of Medical Sciences, Tabriz, IR Iran
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Choong TW, He J, Lee SK, Dodd IC. Growing Different Lactuca Genotypes Aeroponically within a Tropical Greenhouse-Cool Rootzone Temperatures Decreased Rootzone Ethylene Concentrations and Increased Shoot Growth. Front Physiol 2016; 7:405. [PMID: 27679582 PMCID: PMC5020074 DOI: 10.3389/fphys.2016.00405] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2016] [Accepted: 08/29/2016] [Indexed: 11/23/2022] Open
Abstract
Temperate crops cannot grow well in the tropics without rootzone cooling. As cooling increased production costs, this experiment aimed to study the growth of various Lactuca genotypes and propose possible ways of reducing these costs, without compromising productivity. A recombinant inbred line (RIL) of lettuce and its parental lines (L. serriola and L. sativa “Salinas”) were grown aeroponically in a tropical greenhouse under 24°C cool (C) or warm fluctuating 30–36°C ambient (A) rootzone temperature (RZT). Their roots were misted with Netherlands standard nutrient solution for 1 min, at intervals of either 5 min (A5, C5) or 10 min (A10, C10) in attempting to reduce electricity consumption and production costs. Lower mortality and higher productivity were observed in all genotypes when grown in C-RZT. Higher shoot fresh weight was observed under C5 than C10, for the RIL and L. serriola. Since “Salinas” had similar shoot fresh weight at both C-RZ treatments, this may indicate it is more sensitive to RZT than water availability. Under A-RZ treatments, higher carotenoid content, with correspondingly higher nonphotochemical quenching, was observed in A10 for the RIL and “Salinas.” Further, total chlorophyll content was also highest at this RZ treatment for the RIL though photochemical quenching was contrastingly the lowest. Cumulatively, productivity was compromised at A10 as the RIL seemed to prioritize photoprotection over efficiency in photosynthesis, under conditions of higher RZT and lower water availability. Generally, higher RZ ethylene concentrations accumulated in A10 and C10 than A5 and C5, respectively—probably due to spray frequency exerting a greater effect on RZ ethylene accumulation than RZT. In the C5 RZ treatment, lowest RZ ethylene concentration corresponded with highest shoot fresh weight. As such, further research on ethylene (in)sensitivity and water use efficiency could be conducted to identify Lactuca cultivars that are better suited for growth in the tropics, so as to allay production costs with reduced cooling and spray intervals.
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Affiliation(s)
- Tsui-Wei Choong
- Natural Sciences and Science Education, National Institute of Education, Nanyang Technological University Singapore, Singapore
| | - Jie He
- Natural Sciences and Science Education, National Institute of Education, Nanyang Technological University Singapore, Singapore
| | - Sing K Lee
- Natural Sciences and Science Education, National Institute of Education, Nanyang Technological University Singapore, Singapore
| | - Ian C Dodd
- Lancaster Environment Centre, Lancaster University Lancaster, UK
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Steinhoff M, Schauber J, Leyden JJ. New insights into rosacea pathophysiology: a review of recent findings. J Am Acad Dermatol 2014; 69:S15-26. [PMID: 24229632 DOI: 10.1016/j.jaad.2013.04.045] [Citation(s) in RCA: 203] [Impact Index Per Article: 20.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2013] [Accepted: 04/21/2013] [Indexed: 02/06/2023]
Abstract
Rosacea is a common, chronic inflammatory skin disease of poorly understood origin. Based on its clinical features (flushing, chronic inflammation, fibrosis) and trigger factors, a complex pathobiology involving different regulatory systems can be anticipated. Although a wealth of research has shed new light over recent years on its pathophysiology, the precise interplay of the various dysregulated systems (immune, vascular, nervous) is still poorly understood. Most authors agree on 4 major clinical subtypes of rosacea: erythematotelangiectatic rosacea, papulopustular rosacea, phymatous rosacea, and ocular rosacea. Still, it needs to be elucidated whether these subtypes develop in a consecutive serial fashion or if any subtypes may occur individually as part of a syndrome. Because rosacea often affects multiple family members, a genetic component is also suspected, but the genetic basis of rosacea remains unclear. During disease manifestation and early stage, the innate immune system and neurovascular dysregulation seem to be driving forces in rosacea pathophysiology. Dissection of major players for disease progression and in advanced stages is severely hampered by the complex activation of the innate and adaptive immune systems, enhanced neuroimmune communication, profound blood vessel and possibly lymphatic vessel changes, and activation of almost every resident cell in the skin. This review discusses some of the recent findings and aims to build unifying hypotheses for a modern understanding of rosacea pathophysiology.
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Affiliation(s)
- Martin Steinhoff
- Department of Dermatology, University of California, San Francisco, California.
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Afdhal NH, Dusheiko GM, Giannini EG, Chen PJ, Han KH, Mohsin A, Rodriguez-Torres M, Rugina S, Bakulin I, Lawitz E, Shiffman ML, Tayyab GUN, Poordad F, Kamel YM, Brainsky A, Geib J, Vasey SY, Patwardhan R, Campbell FM, Theodore D. Eltrombopag increases platelet numbers in thrombocytopenic patients with HCV infection and cirrhosis, allowing for effective antiviral therapy. Gastroenterology 2014; 146:442-52.e1. [PMID: 24126097 DOI: 10.1053/j.gastro.2013.10.012] [Citation(s) in RCA: 105] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/18/2013] [Revised: 10/02/2013] [Accepted: 10/05/2013] [Indexed: 02/08/2023]
Abstract
BACKGROUND & AIMS Thrombocytopenia is common among patients with hepatitis C virus (HCV) infection and advanced fibrosis or cirrhosis, limiting initiation and dose of peginterferon-alfa (PEG) and ribavirin (RBV) therapy. The phase 3 randomized, controlled studies, Eltrombopag to Initiate and Maintain Interferon Antiviral Treatment to Benefit Subjects with Hepatitis C-Related Liver Disease (ENABLE)-1 and ENABLE-2, investigated the ability of eltrombopag to increase the number of platelets in patients, thereby allowing them to receive initiation or maintenance therapy with PEG and RBV. METHODS Patients with HCV infection and thrombocytopenia (platelet count <75,000/μL) who participated in ENABLE-1 (n = 715) or ENABLE-2 (n = 805), from approximately 150 centers in 23 countries, received open-label eltrombopag (25-100 mg/day) for 9 weeks or fewer. Patients whose platelet counts reached the predefined minimal threshold for the initiation of PEG and RBV therapy (95% from ENABLE-1 and 94% from ENABLE-2) entered the antiviral treatment phase, and were assigned randomly (2:1) to groups that received eltrombopag or placebo along with antiviral therapy (24 or 48 weeks, depending on HCV genotype). The primary end point was sustained virologic response (SVR) 24 weeks after completion of antiviral therapy. RESULTS More patients who received eltrombopag than placebo achieved SVRs (ENABLE-1: eltrombopag, 23%; placebo, 14%; P = .0064; ENABLE-2: eltrombopag, 19%; placebo, 13%; P = .0202). PEG was administered at higher doses, with fewer dose reductions, in the eltrombopag groups of each study compared with the placebo groups. More patients who received eltrombopag than placebo maintained platelet counts of 50,000/μL or higher throughout antiviral treatment (ENABLE-1, 69% vs 15%; ENABLE-2, 81% vs 23%). Adverse events were similar between groups, with the exception of hepatic decompensation (both studies: eltrombopag, 10%; placebo, 5%) and thromboembolic events, which were more common in the eltrombopag group of ENABLE-2. CONCLUSIONS Eltrombopag increases platelet numbers in thrombocytopenic patients with HCV and advanced fibrosis and cirrhosis, allowing otherwise ineligible or marginal patients to begin and maintain antiviral therapy, leading to significantly increased rates of SVR. Clinical trial no: NCT00516321, NCT00529568.
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Affiliation(s)
- Nezam H Afdhal
- Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, Massachusetts.
| | | | | | - Pei-Jer Chen
- National Taiwan University Hospital, Taipei, Taiwan
| | | | - Aftab Mohsin
- Services Institute of Medical Sciences, Lahore, Pakistan
| | | | - Sorin Rugina
- Spitalul Clinic de BoliInfectioase, Constanta, Romania
| | - Igor Bakulin
- Central Scientific Research Institution of Gastroenterology of the Moscow Health Department, Moscow, Russia
| | - Eric Lawitz
- The Texas Liver Institute/University of Texas Health Science Center, San Antonio, Texas
| | | | | | - Fred Poordad
- The Texas Liver Institute/University of Texas Health Science Center, San Antonio, Texas
| | | | | | - James Geib
- GlaxoSmithKline, Collegeville, Pennsylvania
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Caverzan A, Bonifacio A, Carvalho FEL, Andrade CMB, Passaia G, Schünemann M, Maraschin FDS, Martins MO, Teixeira FK, Rauber R, Margis R, Silveira JAG, Margis-Pinheiro M. The knockdown of chloroplastic ascorbate peroxidases reveals its regulatory role in the photosynthesis and protection under photo-oxidative stress in rice. Plant Sci 2014; 214:74-87. [PMID: 24268165 DOI: 10.1016/j.plantsci.2013.10.001] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2013] [Revised: 09/12/2013] [Accepted: 10/01/2013] [Indexed: 05/26/2023]
Abstract
The inactivation of the chloroplast ascorbate peroxidases (chlAPXs) has been thought to limit the efficiency of the water-water cycle and photo-oxidative protection under stress conditions. In this study, we have generated double knockdown rice (Oryza sativa L.) plants in both OsAPX7 (sAPX) and OsAPX8 (tAPX) genes, which encode chloroplastic APXs (chlAPXs). By employing an integrated approach involving gene expression, proteomics, biochemical and physiological analyses of photosynthesis, we have assessed the role of chlAPXs in the regulation of the protection of the photosystem II (PSII) activity and CO2 assimilation in rice plants exposed to high light (HL) and methyl violagen (MV). The chlAPX knockdown plants were affected more severely than the non-transformed (NT) plants in the activity and structure of PSII and CO2 assimilation in the presence of MV. Although MV induced significant increases in pigment content in the knockdown plants, the increases were apparently not sufficient for protection. Treatment with HL also caused generalized damage in PSII in both types of plants. The knockdown and NT plants exhibited differences in photosynthetic parameters related to efficiency of utilization of light and CO2. The knockdown plants overexpressed other antioxidant enzymes in response to the stresses and increased the GPX activity in the chloroplast-enriched fraction. Our data suggest that a partial deficiency of chlAPX expression modulate the PSII activity and integrity, reflecting the overall photosynthesis when rice plants are subjected to acute oxidative stress. However, under normal growth conditions, the knockdown plants exhibit normal phenotype, biochemical and physiological performance.
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Affiliation(s)
- Andréia Caverzan
- Department of Genetics, Federal University of Rio Grande do Sul, Brazil; Biotechnology Center, Federal University of Rio Grande do Sul, Brazil
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12
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Laisk A, Oja V, Eichelmann H, Dall'Osto L. Action spectra of photosystems II and I and quantum yield of photosynthesis in leaves in State 1. Biochim Biophys Acta 2013; 1837:315-25. [PMID: 24333386 DOI: 10.1016/j.bbabio.2013.12.001] [Citation(s) in RCA: 55] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2013] [Revised: 10/30/2013] [Accepted: 12/03/2013] [Indexed: 11/30/2022]
Abstract
The spectral global quantum yield (YII, electrons/photons absorbed) of photosystem II (PSII) was measured in sunflower leaves in State 1 using monochromatic light. The global quantum yield of PSI (YI) was measured using low-intensity monochromatic light flashes and the associated transmittance change at 810nm. The 810-nm signal change was calibrated based on the number of electrons generated by PSII during the flash (4·O2 evolution) which arrived at the PSI donor side after a delay of 2ms. The intrinsic quantum yield of PSI (yI, electrons per photon absorbed by PSI) was measured at 712nm, where photon absorption by PSII was small. The results were used to resolve the individual spectra of the excitation partitioning coefficients between PSI (aI) and PSII (aII) in leaves. For comparison, pigment-protein complexes for PSII and PSI were isolated, separated by sucrose density ultracentrifugation, and their optical density was measured. A good correlation was obtained for the spectral excitation partitioning coefficients measured by these different methods. The intrinsic yield of PSI was high (yI=0.88), but it absorbed only about 1/3 of quanta; consequently, about 2/3 of quanta were absorbed by PSII, but processed with the low intrinsic yield yII=0.63. In PSII, the quantum yield of charge separation was 0.89 as detected by variable fluorescence Fv/Fm, but 29% of separated charges recombined (Laisk A, Eichelmann H and Oja V, Photosynth. Res. 113, 145-155). At wavelengths less than 580nm about 30% of excitation is absorbed by pigments poorly connected to either photosystem, most likely carotenoids bound in pigment-protein complexes.
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Affiliation(s)
- Agu Laisk
- Tartu Ülikooli Molekulaar- ja Rakubioloogia Instituut, Riia tn. 23, Tartu 51010, Estonia.
| | - Vello Oja
- Tartu Ülikooli Molekulaar- ja Rakubioloogia Instituut, Riia tn. 23, Tartu 51010, Estonia
| | - Hillar Eichelmann
- Tartu Ülikooli Molekulaar- ja Rakubioloogia Instituut, Riia tn. 23, Tartu 51010, Estonia
| | - Luca Dall'Osto
- Università di Verona, Dipartimento di Biotecnologie, Strada Le Grazie, 15 37135 Verona, Italy
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Sales CRG, Ribeiro RV, Silveira JAG, Machado EC, Martins MO, Lagôa AMMA. Superoxide dismutase and ascorbate peroxidase improve the recovery of photosynthesis in sugarcane plants subjected to water deficit and low substrate temperature. Plant Physiol Biochem 2013; 73:326-36. [PMID: 24184453 DOI: 10.1016/j.plaphy.2013.10.012] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2013] [Accepted: 10/10/2013] [Indexed: 05/18/2023]
Abstract
The physiological responses of C4 species to simultaneous water deficit and low substrate temperature are poorly understood, as well as the recovery capacity. This study investigated whether the effect of these abiotic stressors is cultivar-dependent. The differential responses of drought-resistant (IACSP94-2094) and drought-sensitive (IACSP97-7065) sugarcane cultivars were characterized to assess the relationship between photosynthesis and antioxidant protection by APX and SOD isoforms under stress conditions. Our results show that drought alone or combined with low root temperature led to excessive energetic pressure at the PSII level. Heat dissipation was increased in both genotypes, but the high antioxidant capacity due to higher SOD and APX activities was genotype-dependent and it operated better in the drought-resistant genotype. High SOD and APX activities were associated with a rapid recovery of photosynthesis in IACSP94-2094 plants after drought and low substrate temperature alone or simultaneously.
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Affiliation(s)
- Cristina R G Sales
- Laboratório de Fisiologia Vegetal "Coaracy M. Franco", Instituto Agronômico, CP 28, CEP 13012-970 Campinas, SP, Brazil
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14
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Abstract
Physical activity (PA) and exercise training (ET) have great potential in the prevention, management, and rehabilitation of a variety of diseases, but this potential has not been fully realized in clinical practice. The health care system (HCS) could do much more to support patients in increasing their PA and ET. However, counseling on ET is not used widely by the HCS owing partly to attitudes but mainly to practical obstacles. Extensive searches of MEDLINE, the Cochrane Library, the Database of Abstracts of Reviews of Effects, and ScienceDirect for literature published between January 1, 2000, and January 31, 2013, provided data to assess the critical characteristics of ET counseling. The evidence reveals that especially brief ET counseling is an efficient, effective, and cost-effective means to increase PA and ET and to bring considerable clinical benefits to various patient groups. Furthermore, it can be practiced as part of the routine work of the HCS. However, there is a need and feasible means to increase the use and improve the quality of ET counseling. To include PA and ET promotion as important means of comprehensive health care and disease management, a fundamental change is needed. Because exercise is medicine, it should be seen and dealt with in the same ways as pharmaceuticals and other medical interventions regarding the basic and continuing education and training of health care personnel and processes to assess its needs and to prescribe and deliver it, to reimburse the services related to it, and to fund research on its efficacy, effectiveness, feasibility, and interactions and comparability with other preventive, therapeutic, and rehabilitative modalities. This change requires credible, strong, and skillful advocacy inside the medical community and the HCS.
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Chen S, Liu A, Zhang S, Li C, Chang R, Liu D, Ahammed GJ, Lin X. Overexpression of mitochondrial uncoupling protein conferred resistance to heat stress and Botrytis cinerea infection in tomato. Plant Physiol Biochem 2013; 73:245-53. [PMID: 24161754 DOI: 10.1016/j.plaphy.2013.10.002] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2013] [Accepted: 10/02/2013] [Indexed: 05/22/2023]
Abstract
The mitochondrial uncoupling protein genes improve plant stress tolerance by minimizing oxidative damage. However, the underlying mechanism of redox homeostasis and antioxidant signaling associated with reactive oxygen species (ROS) accumulation remained poorly understood. We introduced LeUCP gene into tomato line Ailsa Craig via Agrobacterium-mediated method. Transgenic lines were confirmed for integration into the tomato genome using PCR and Southern blot hybridization. One to three copies of the transgene were integrated into the tomato nuclear genome. Transcription of LeUCP in various transgenic lines was determined using real-time PCR. Transgenic tomato overexpressing LeUCP showed higher growth rate, chlorophyll content, maximum photochemical efficiency of PSII (Fv/Fm), photochemical quenching coefficient (qP) and electron transport rate (ETR), increased contents of AsA and proline, higher AsA/DHA ratio and GalLDH activity, reduced ROS accumulation, and enhanced heat stress tolerance compared with the control plants. The transgenic tomato plants also exhibited significant increases in tolerance against the necrotrophic fungus Botrytis cinerea. Taken together, our results suggest that LeUCP may play a pivotal role in controlling a broad range of abiotic and biotic stresses in plants by increasing redox level and antioxidant capacity, elevating electron transport rate, lowering H2O2 and lipid peroxidation accumulation.
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Affiliation(s)
- Shuangchen Chen
- College of Forestry, Henan University of Science and Technology, Luoyang 471003, PR China.
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16
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Abstract
Sustained virological response (SVR) to anti-hepatitis C virus (HCV) treatment is an outcome that can improve life expectancy in persons with human immunodeficiency virus (HIV) infection. Results of anti-HCV treatment are poor, and less than 50% of treated patients show SVR to peginterferon plus ribavirin combination therapy; in infections from HCV genotype 1 this proportion is less than 40%. Pilot studies have demonstrated that Boceprevir or Telaprevir in combination with peginterferon plus ribavirin are able to increase the SVR rate from 45% to 74% with Telaprevir, and from 26% to 61% with Boceprevir in persons never treated for hepatitis C. Interim data seem to indicate a high rate of HCV RNA undetectability on treatment also in patients without sustained response to peginterferon plus ribavirin. Both Telaprevir and Boceprevir have drug-drug interactions with antiretrovirals, and options for concurrent antiretroviral therapy are restricted. There are also several new anti-HCV drugs under study with the potential for more tolerable effective future regimens. The indication for treatment in a patient with HCV/HIV coinfection should take into account the priority of treatment, the probability of sustained response, the potential toxicities, the concurrent antiretroviral therapy options, the patient's motivation, and the sustainability of current and future therapies.
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Affiliation(s)
- Massimo Puoti
- Division of Infectious Diseases, AO Ospedale Niguarda Ca' Granda, Milano, Italy.
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Merlen C, Farhat N, Luo X, Chatenet D, Tadevosyan A, Villeneuve LR, Gillis MA, Nattel S, Thorin E, Fournier A, Allen BG. Intracrine endothelin signaling evokes IP3-dependent increases in nucleoplasmic Ca²⁺ in adult cardiac myocytes. J Mol Cell Cardiol 2013; 62:189-202. [PMID: 23756157 DOI: 10.1016/j.yjmcc.2013.05.021] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/15/2012] [Revised: 05/30/2013] [Accepted: 05/31/2013] [Indexed: 12/17/2022]
Abstract
Endothelin receptors are present on the nuclear membranes in adult cardiac ventricular myocytes. The objectives of the present study were to determine 1) which endothelin receptor subtype is in cardiac nuclear membranes, 2) if the receptor and ligand traffic from the cell surface to the nucleus, and 3) the effect of increased intracellular ET-1 on nuclear Ca(2+) signaling. Confocal microscopy using fluorescently-labeled endothelin analogs confirmed the presence of ETB at the nuclear membrane of rat cardiomyocytes in skinned-cells and isolated nuclei. Furthermore, in both cardiac myocytes and aortic endothelial cells, endocytosed ET:ETB complexes translocated to lysosomes and not the nuclear envelope. Although ETA and ETB can form heterodimers, the presence or absence of ETA did not alter ETB trafficking. Treatment of isolated nuclei with peptide: N-glycosidase F did not alter the electrophoretic mobility of ETB. The absence of N-glycosylation further indicates that these receptors did not originate at the cell surface. Intracellular photolysis of a caged ET-1 analog ([Trp-ODMNB(21)]ET-1) evoked an increase in nucleoplasmic Ca(2+) ([Ca(2+)]n) that was attenuated by inositol 1,4,5-trisphosphate receptor inhibitor 2-aminoethoxydiphenyl borate and prevented by pre-treatment with ryanodine. A caged cell-permeable analog of the ETB-selective antagonist IRL-2500 blocked the ability of intracellular cET-1 to increase [Ca(2+)]n whereas extracellular application of ETA and ETB receptor antagonists did not. These data suggest that 1) the endothelin receptor in the cardiac nuclear membranes is ETB, 2) ETB traffics directly to the nuclear membrane after biosynthesis, 3) exogenous endothelins are not ligands for ETB on nuclear membranes, and 4) ETB associated with the nuclear membranes regulates nuclear Ca(2+) signaling.
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Vaniotis G, Glazkova I, Merlen C, Smith C, Villeneuve LR, Chatenet D, Therien M, Fournier A, Tadevosyan A, Trieu P, Nattel S, Hébert TE, Allen BG. Regulation of cardiac nitric oxide signaling by nuclear β-adrenergic and endothelin receptors. J Mol Cell Cardiol 2013; 62:58-68. [PMID: 23684854 DOI: 10.1016/j.yjmcc.2013.05.003] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/14/2012] [Revised: 04/11/2013] [Accepted: 05/07/2013] [Indexed: 01/19/2023]
Abstract
At the cell surface, βARs and endothelin receptors can regulate nitric oxide (NO) production. β-adrenergic receptors (βARs) and type B endothelin receptors (ETB) are present in cardiac nuclear membranes and regulate transcription. The present study investigated the role of the NO pathway in the regulation of gene transcription by these nuclear G protein-coupled receptors. Nitric oxide production and transcription initiation were measured in nuclei isolated from the adult rat heart. The cell-permeable fluorescent dye 4,5-diaminofluorescein diacetate (DAF2 DA) was used to provide a direct assessment of nitric oxide release. Both isoproterenol and endothelin increased NO production in isolated nuclei. Furthermore, a β3AR-selective agonist, BRL 37344, increased NO synthesis whereas the β1AR-selective agonist xamoterol did not. Isoproterenol increased, whereas ET-1 reduced, de novo transcription. The NO synthase inhibitor l-NAME prevented isoproterenol from increasing either NO production or de novo transcription. l-NAME also blocked ET-1-induced NO-production but did not alter the suppression of transcription initiation by ET-1. Inhibition of the cGMP-dependent protein kinase (PKG) using KT5823 also blocked the ability of isoproterenol to increase transcription initiation. Furthermore, immunoblotting revealed eNOS, but not nNOS, in isolated nuclei. Finally, caged, cell-permeable isoproterenol and endothelin-1 analogs were used to selectively activate intracellular β-adrenergic and endothelin receptors in intact adult cardiomyocytes. Intracellular release of caged ET-1 or isoproterenol analogs increased NO production in intact adult cardiomyocytes. Hence, activation of the NO synthase/guanylyl cyclase/PKG pathway is necessary for nuclear β3ARs to increase de novo transcription. Furthermore, we have demonstrated the potential utility of caged receptor ligands in selectively modulating signaling via endogenous intracellular G protein-coupled receptors.
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