Carbon fluxes of China's coastal wetlands and impacts of reclamation and restoration

Coastal wetlands play an important role in regulating atmospheric carbon dioxide (CO2) concentrations and contribute significantly to climate change mitigation. However, climate change, reclamation, and restoration have been causing substantial changes in coastal wetland areas and carbon exchange in China during recent decades. Here we compiled a carbon flux database consisting of 15 coastal wetland sites to assess the magnitude, patterns, and drivers of carbon fluxes and to compare fluxes among contrasting natural, disturbed, and restored wetlands. The natural coastal wetlands have the average net ecosystem exchange of CO2 (NEE) of -577 g C m-2 year-1, with -821 g C m-2 year-1 for mangrove forests and -430 g C m-2 year-1 for salt marshes. There are pronounced latitudinal patterns for carbon dioxide exchange of natural coastal wetlands: NEE increased whereas gross primary production (GPP) and respiration of ecosystem decreased with increasing latitude. Distinct environmental factors drive annual variations of GPP between mangroves and salt marshes; temperature was the dominant controlling factor in salt marshes, while temperature, precipitation, and solar radiation were co-dominant in mangroves. Meanwhile, both anthropogenic reclamation and restoration had substantial effects on coastal wetland carbon fluxes, and the effect of the anthropogenic perturbation in mangroves was more extensive than that in salt marshes. Furthermore, from 1980 to 2020, anthropogenic reclamation of China's coastal wetlands caused a carbon loss of ~3720 Gg C, while the mangrove restoration project during the period of 2021-2025 may switch restored coastal wetlands from a carbon source to carbon sink with a net carbon gain of 73 Gg C. The comparison of carbon fluxes among these coastal wetlands can improve our understanding of how anthropogenic perturbation can affect the potentials of coastal blue carbon in China, which has implications for informing conservation and restoration strategies and efforts of coastal wetlands.

The interaction between land-use change and fire regimes, directly and indirectly, affects the urban avian assemblages of Darwin, Australia

The interaction between environmental stressors may be a greater threat to biota than any individual ecological threat on its own. Land-use change and inappropriate fire regimes are known to pose great challenges to biodiversity conservation worldwide. Despite much research being conducted into their singular impacts on ecosystems, very few have investigated how their interaction may be affecting the biota of a region. We used data from surveys in 1998/2000 and 2019/2020 to compare the feeding guild assemblages of bird communities in different habitats within the greater Darwin region. By compiling two sets of spatial data, land-use change, and fire history mapping, we were able to investigate their interaction and impact on the avian assemblages in the Darwin urban area. Using Generalized Linear Mixed Models (GLMM) we found that an increase in urbanization significantly affected fire occurrence across study sites. Furthermore, we found that the interaction between land-use change and fire regimes had a significant effect on species that primarily feed on fruit. We conclude that while an increase in urbanization did not directly affect the avian assemblages, the impact of land-use change on the fire regimes indirectly impacted urban bird community structures.

A multidimensional framework to quantify the effects of urbanization on avian breeding fitness

Urbanization has dramatically altered Earth's landscapes and changed a multitude of environmental factors. This has resulted in intense land-use change, and adverse consequences such as the urban heat island effect (UHI), noise pollution, and artificial light at night (ALAN). However, there is a lack of research on the combined effects of these environmental factors on life-history traits and fitness, and on how these interactions shape food resources and drive patterns of species persistence. Here, we systematically reviewed the literature and created a comprehensive framework of the mechanistic pathways by which urbanization affects fitness and thus favors certain species. We found that urbanization-induced changes in urban vegetation, habitat quality, spring temperature, resource availability, acoustic environment, nighttime light, and species behaviors (e.g., laying, foraging, and communicating) influence breeding choices, optimal time windows that reduce phenological mismatch, and breeding success. Insectivorous and omnivorous species that are especially sensitive to temperature often experience advanced laying behaviors and smaller clutch sizes in urban areas. By contrast, some granivorous and omnivorous species experience little difference in clutch size and number of fledglings because urban areas make it easier to access anthropogenic food resources and to avoid predation. Furthermore, the interactive effect of land-use change and UHI on species could be synergistic in locations where habitat loss and fragmentation are greatest and when extreme-hot weather events take place in urban areas. However, in some instances, UHI may mitigate the impact of land-use changes at local scales and provide suitable breeding conditions by shifting the environment to be more favorable for species' thermal limits and by extending the time window in which food resources are available in urban areas. As a result, we determined five broad directions for further research to highlight that urbanization provides a great opportunity to study environmental filtering processes and population dynamics.

Land‐use changes interact with geology to facilitate dispersal of the rock hyrax (Procavia capensis) and leishmaniasis across Israel and the West Bank

Geology plays a fundamental role in establishing species' habitats, determining both physical (e.g., landscape morphology, soil texture) and chemical (e.g., mineral composition, water availability) properties. In the current Anthropocene epoch, human activity is transforming Earth's geology and ecosystems. Yet to date, there have been almost no studies incorporating geology when examining the effect of such land‐use changes on species distribution. This study seeks to uncover how specific land‐use changes interact with geology, in order to explain the recent and rapid expansion of the rock hyrax (Procavia capensis) across the mountains of central Israel and the West Bank. Hyraxes are dependent on rock mounds for their habitat, and their expansion seems to be correlated with increasing infrastructure construction. However, their expansion patterns differ among locations, even when the human land‐use is similar. To explain the patterns of hyrax distribution observed over the past 46 years, we converted geological data into ecological data, which present the probability of the local bedrock breaking into boulders, whether due to either natural or anthropogenic weathering processes. We applied species distribution models (SDMs) and found that the expansion of rock hyrax populations was facilitated by means of the interaction of specific geological units with land‐use practices (e.g., roads and construction), which resulted in the accumulation of large boulders, creating novel habitats and stepping stones in previously unsuitable areas for hyraxes. Since rock hyraxes are major hosts of the leishmaniasis pathogen, the findings from this study offer important insights into the progression and potential outbreaks of the disease in human populations. Understanding the role that geology plays in shaping a species' niche is expected to prove useful in studying the distribution of other wildlife species and is fundamental in studies seeking to predict the potential ecological impacts on local biodiversity associated with land‐use change.

Spatial and temporal non-stationarity in long-term population dynamics of over-wintering birds of North America

Understanding population changes across long time scales and at fine spatiotemporal resolutions is important for confronting a broad suite of conservation challenges. However, this task is hampered by a lack of quality long-term census data for multiple species collected across large geographic regions. Here, we used century-long (1919-2018) data from the Audubon Christmas Bird Count (CBC) survey to assess population changes in over 300 avian species in North America and evaluate their temporal non-stationarity. To estimate population sizes across the entire century, we employed a Bayesian hierarchical model that accounts for species detection probabilities, variable sampling effort, and missing data. We evaluated population trends using generalized additive models (GAMs) and assessed temporal non-stationarity in the rate of population change by extracting the first derivatives from the fitted GAM functions. We then summarized the population dynamics across species, space, and time using a non-parametric clustering algorithm that categorized individual population trends into four distinct trend clusters. We found that species varied widely in their population trajectories, with over 90% of species showing a considerable degree of spatial and/or temporal non-stationarity, and many showing strong shifts in the direction and magnitude of population trends throughout the past century. Species were roughly equally distributed across the four clusters of population trajectories, although grassland, forest, and desert specialists more commonly showed declining trends. Interestingly, for many species, region-wide population trends often differed from those observed at individual sites, suggesting that conservation decisions need to be tailored to fine spatial scales. Together, our results highlight the importance of considering spatial and temporal non-stationarity when assessing long-term population changes. More generally, we demonstrate the promise of novel statistical techniques for improving the utility and extending the temporal scope of existing citizen science datasets.

Research on land-use evolution and ecosystem services value response in mountainous counties based on the SD-PLUS model

Rapid urbanization has caused changes in climate and environment and threatened the ecosystem with multiple risks. The ecosystem services capacity has shown a downward trend accordingly. It is significant to explore the spatio‐temporal evolution of land use and ecosystem services value (ESV) in mountainous counties at small scales, as it coordinates economic growth and ecological protection, and promotes sustainable and high‐quality development. Based on the SD‐PLUS model, the study simulated three scenarios of land‐use change in Qianshan city from 2019 to 2035: high‐growth rate, medium‐growth rate, and low‐growth rate, and studied the impacts of land‐use change on the ESV. Results showed that: (1) Under the three scenarios, the construction land in the study area increased significantly, the forest and water have a decreasing trend, and the scale of gardens partly increased. (2) In the urban built‐up areas, a significant amount of construction land is centrally expanded, whereas, in mountainous regions, construction land exhibits sporadic point expansion. And among the various factors that influence land‐use change, the impact of roads at all levels is the most significant, followed by elevation. (3) The overall ESV shows a downward trend, with the low‐growth rate scenario dropping the least (4.91%). The value distribution changes little at the space scale, and different regions demonstrate different degrees of change. From the perspective of value type, the service values of water conservation and waste treatment are significantly reduced, while that of food production is relatively stable; from the perspective of various lands with their ESV, cultivated land and forest remain stable. The study results can provide technical ideas for the coordinated economic development and ecological protection of mountainous cities and boost the implementation of green development.

No species loss, but pronounced species turnover in grasslands in the Northern Alps over 25 years

The abandonment of marginally productive habitats and the intensification of land use on productive sites have caused transformative changes in vegetation composition in Central Europe. In this study, after 25 years we resurveyed a total of 145 grassland relevés from the mid-1990s in a grassland-dominated valley of the Northern Alps of Upper Austria. We studied changes in richness and composition, and related these to underlying drivers. We found that the average species number in plots increased from 46 in the first survey period to 49 in the second one. Median species richness across sites significantly increased from 1995 to 2020 for Festuco-Brometea (55-61 species) and Galio-Urticetea (24-32 species), but did not show any significant change for the other classes. Further, we recorded substantial species turnover, with winners consisting mostly of species that prefer nutrient-rich sites, while losers were predominantly species of nutrient-poor sites. In particular, using Ellenberg Indicator Values for calculating community indices, we found an indication for ongoing eutrophication in vegetation types of nutrient-poor vegetation classes (Festuco-Brometea and Calluno-Ulicetea), and in wet habitats (Scheuchzerio-Caricetea fuscae). Community indices of wet habitats also showed clear signs of becoming more mesic. Thermophilization of community indices was evident across several vegetation classes. Further, alien species that were very rare in the mid-1990s became more abundant in the resurveyed plots, although the level of invasion is still low. Finally, community values for nutrients of plots that are located in a protected area that has been established in 2014 did not increase significantly, while this was the case in plots outside the protected area, indicating that the management of the protected area has positive effects in halting eutrophication. We conclude that despite overall species richness changing only moderately between both surveys, substantial changes in community composition toward more nitrophilic and thermophilic conditions occurred.

Bird lineages colonizing urban habitats have diversified at high rates across deep time

AIM

Urbanization exposes species to novel ecological conditions. Some species thrive in urban areas, whereas many others are excluded from these human-made environments. Previous analyses suggest that the ability to cope with rapid environmental change is associated with long-term patterns of diversification, but whether the suite of traits associated with the ability to colonize urban environments is linked to this process remains poorly understood.

LOCATION

World.

TIME PERIOD

Current.

MAJOR TAXA STUDIED

Passerine birds.

METHODS

We applied macroevolutionary models to a large dataset of passerine birds to compare the evolutionary history of urban-tolerant species with that of urban-avoidant species. Specifically, we examined models of state-dependent speciation and extinction to assess the macroevolution of urban tolerance as a binary trait, in addition to models of quantitative trait-dependent diversification based on relative urban abundance. We also ran simulation-based model assessments to explore potential sources of bias.

RESULTS

We provide evidence that historically, species with traits promoting urban colonization have undergone faster diversification than urban-avoidant species, indicating that urbanization favours clades with a historical tendency towards rapid speciation or reduced extinction. In addition, we find that past transitions towards states that currently impede urban colonization by passerines have been more frequent than in the opposite direction. Furthermore, we find a portion of urban-avoidant passerines to be recent and to undergo fast diversification. All highly supported models give this result consistently.

MAIN CONCLUSIONS

Urbanization is mainly associated with the loss of lineages that are inherently more vulnerable to extinction over deep time, whereas cities tend to be colonized by less vulnerable lineages, for which urbanization might be neutral or positive in terms of longer-term diversification. Urban avoidance is associated with high rates of recent diversification for some clades occurring in regions with relatively intact natural ecosystems and low current levels of urbanization.

Divergent Representation of Precipitation Recycling in the Amazon and the Congo in CMIP6 Models

Moisture evaporated from the land contributing to precipitation in a given area is known as precipitation recycling and needs to be accurately represented in climate models. The Amazon and Congo basins are reported to have the highest precipitation recycling rates globally, but model representation has not yet been assessed over these regions. We evaluated recycling over the Amazon and Congo in 45 Coupled Model Intercomparison Project Phase 6 models. Regional annual means from models and reanalyzes agreed well over both basins. Models captured seasonal variation in recycling over the Congo but there was a large-scale underestimation of recycling during the Amazon dry-to-wet transition season relative to ERA5, caused by models underestimating Amazon evapotranspiration and overestimating incoming wind speed and associated water vapor imports. Both regions show robust declines in precipitation recycling over the next century under future climate-change scenarios. Our results suggest models may underestimate impacts of deforestation on regional precipitation in the Amazon.

Up in the air: Threats to Afromontane biodiversity from climate change and habitat loss revealed by genetic monitoring of the Ethiopian Highlands bat

While climate change is recognized as a major future threat to biodiversity, most species are currently threatened by extensive human-induced habitat loss, fragmentation and degradation. Tropical high-altitude alpine and montane forest ecosystems and their biodiversity are particularly sensitive to temperature increases under climate change, but they are also subject to accelerated pressures from land conversion and degradation due to a growing human population. We studied the combined effects of anthropogenic land-use change, past and future climate changes and mountain range isolation on the endemic Ethiopian Highlands long-eared bat, Plecotus balensis, an understudied bat that is restricted to the remnant natural high-altitude Afroalpine and Afromontane habitats. We integrated ecological niche modelling, landscape genetics and model-based inference to assess the genetic, geographic and demographic impacts of past and recent environmental changes. We show that mountain range isolation and historic climates shaped population structure and patterns of genetic variation, but recent anthropogenic land-use change and habitat degradation are associated with a severe population decline and loss of genetic diversity. Models predict that the suitable niche of this bat has been progressively shrinking since the last glaciation period. This study highlights threats to Afroalpine and Afromontane biodiversity, squeezed to higher altitudes under climate change while losing genetic diversity and suffering population declines due to anthropogenic land-use change. We conclude that the conservation of tropical montane biodiversity requires a holistic approach, using genetic, ecological and geographic information to understand the effects of environmental changes across temporal scales and simultaneously addressing the impacts of multiple threats.

Plant community assembly in suburban vacant lots depends on earthmoving legacy, habitat connectivity, and current mowing frequency

In suburban regions, vacant lots potentially offer significant opportunities for biodiversity conservation. Recently, in Japan, due to an economic recession, some previously developed lands have become vacant. Little is known, however, about the legacy of earlier earthmoving, which involves topsoil removal and ground leveling before residential construction, on plant community composition in such vacant lots. To understand (dis)assembly processes in vacant lots, we studied 24 grasslands in a suburban region in Japan: 12 grasslands that had experienced earthmoving and 12 that had not. We surveyed plant community composition and species richness, and clarified compositional turnover (replacement of species) and nestedness (nonrandom species loss) by distance-based β-diversities, which were summarized by PCoA analysis. We used piecewise structural equation modeling to examine the effects of soil properties, mowing frequency, past and present habitat connectivities on compositional changes. As a result, past earthmoving, mowing frequency, soil properties, and past habitat connectivity were found to be the drivers of compositional turnover. In particular, we found legacy effects of earthmoving: earthmoving promoted turnover from native grassland species to weeds in arable lands or roadside by altering soil properties. Mowing frequency also promoted the same turnover, implying that extensive rather than intensive mowing can modify the negative legacy effects and maintain grassland species. Decrease in present habitat connectivity marginally enhanced nonrandom loss of native grassland species (nestedness). Present habitat connectivity had a positive effect on species richness, highlighting the important roles of contemporary dispersal. Our study demonstrates that community assembly is a result of multiple processes differing in spatial and temporal scales. We suggest that extensive mowing at local scale, as well as giving a high conservation priority to grasslands with high habitat connectivity at regional scale, is the promising actions to maintain endangered native grassland species in suburban landscapes with negative legacy effects of earthmoving.

Vegetation state changes in the course of shrub encroachment in an African savanna since about 1850 CE and their potential drivers

Shrub encroachment has far-reaching ecological and economic consequences in many ecosystems worldwide. Yet, compositional changes associated with shrub encroachment are often overlooked despite having important effects on ecosystem functioning.We document the compositional change and potential drivers for a northern Namibian Combretum woodland transitioning into a Terminalia shrubland. We use a multiproxy record (pollen, sedimentary ancient DNA, biomarkers, compound-specific carbon (δ13C) and deuterium (δD) isotopes, bulk carbon isotopes (δ13Corg), grain size, geochemical properties) from Lake Otjikoto at high taxonomical and temporal resolution.We provide evidence that state changes in semiarid environments may occur on a scale of one century and that transitions between stable states can span around 80 years and are characterized by a unique vegetation composition. We demonstrate that the current grass/woody ratio is exceptional for the last 170 years, as supported by n-alkane distributions and the δ13C and δ13Corg records. Comparing vegetation records to environmental proxy data and census data, we infer a complex network of global and local drivers of vegetation change. While our δD record suggests physiological adaptations of woody species to higher atmospheric pCO2 concentration and drought, our vegetation records reflect the impact of broad-scale logging for the mining industry, and the macrocharcoal record suggests a decrease in fire activity associated with the intensification of farming. Impact of selective grazing is reflected by changes in abundance and taxonomical composition of grasses and by an increase of nonpalatable and trampling-resistant taxa. In addition, grain-size and spore records suggest changes in the erodibility of soils because of reduced grass cover. Synthesis. We conclude that transitions to an encroached savanna state are supported by gradual environmental changes induced by management strategies, which affected the resilience of savanna ecosystems. In addition, feedback mechanisms that reflect the interplay between management legacies and climate change maintain the encroached state.

Integrating dynamic environmental predictors and species occurrences: Toward true dynamic species distribution models

While biological distributions are not static and change/evolve through space and time, nonstationarity of climatic and land-use conditions is frequently neglected in species distribution models. Even recent techniques accounting for spatiotemporal variation of species occurrence basically consider the environmental predictors as static; specifically, in most studies using species distribution models, predictor values are averaged over a 50- or 30-year time period. This could lead to a strong bias due to monthly/annual variation between the climatic conditions in which species' locations were recorded and those used to develop species distribution models or even a complete mismatch if locations have been recorded more recently. Moreover, the impact of land-use change has only recently begun to be fully explored in species distribution models, but again without considering year-specific values. Excluding dynamic climate and land-use predictors could provide misleading estimation of species distribution. In recent years, however, open-access spatially explicit databases that provide high-resolution monthly and annual variation in climate (for the period 1901-2016) and land-use (for the period 1992-2015) conditions at a global scale have become available. Combining species locations collected in a given month of a given year with the relative climatic and land-use predictors derived from these datasets would thus lead to the development of true dynamic species distribution models (D-SDMs), improving predictive accuracy and avoiding mismatch between species locations and predictor variables. Thus, we strongly encourage modelers to develop D-SDMs using month- and year-specific climatic data as well as year-specific land-use data that match the period in which species data were collected.

Avian ecological succession in the Amazon: A long-term case study following experimental deforestation

Approximately 20% of the Brazilian Amazon has now been deforested, and the Amazon is currently experiencing the highest rates of deforestation in a decade, leading to large-scale land-use changes. Roads have consistently been implicated as drivers of ongoing Amazon deforestation and may act as corridors to facilitate species invasions. Long-term data, however, are necessary to determine how ecological succession alters avian communities following deforestation and whether established roads lead to a constant influx of new species.We used data across nearly 40 years from a large-scale deforestation experiment in the central Amazon to examine the avian colonization process in a spatial and temporal framework, considering the role that roads may play in facilitating colonization.Since 1979, 139 species that are not part of the original forest avifauna have been recorded, including more secondary forest species than expected based on the regional species pool. Among the 35 species considered to have colonized and become established, a disproportionate number were secondary forest birds (63%), almost all of which first appeared during the 1980s. These new residents comprise about 13% of the current community of permanent residents.Widespread generalists associated with secondary forest colonized quickly following deforestation, with few new species added after the first decade, despite a stable road connection. Few species associated with riverine forest or specialized habitats colonized, despite road connection to their preferred source habitat. Colonizing species remained restricted to anthropogenic habitats and did not infiltrate old-growth forests nor displace forest birds.Deforestation and expansion of road networks into terra firme rainforest will continue to create degraded anthropogenic habitat. Even so, the initial pulse of colonization by nonprimary forest bird species was not the beginning of a protracted series of invasions in this study, and the process appears to be reversible by forest succession.

Natural climate solutions versus bioenergy: Can carbon benefits of natural succession compete with bioenergy from short rotation coppice?

Short rotation plantations are often considered as holding vast potentials for future global bioenergy supply. In contrast to raising biomass harvests in forests, purpose-grown biomass does not interfere with forest carbon (C) stocks. Provided that agricultural land can be diverted from food and feed production without impairing food security, energy plantations on current agricultural land appear as a beneficial option in terms of renewable, climate-friendly energy supply. However, instead of supporting energy plantations, land could also be devoted to natural succession. It then acts as a long-term C sink which also results in C benefits. We here compare the sink strength of natural succession on arable land with the C saving effects of bioenergy from plantations. Using geographically explicit data on global cropland distribution among climate and ecological zones, regionally specific C accumulation rates are calculated with IPCC default methods and values. C savings from bioenergy are given for a range of displacement factors (DFs), acknowledging the varying efficiency of bioenergy routes and technologies in fossil fuel displacement. A uniform spatial pattern is assumed for succession and bioenergy plantations, and the considered timeframes range from 20 to 100 years. For many parameter settings-in particular, longer timeframes and high DFs-bioenergy yields higher cumulative C savings than natural succession. Still, if woody biomass displaces liquid transport fuels or natural gas-based electricity generation, natural succession is competitive or even superior for timeframes of 20-50 years. This finding has strong implications with climate and environmental policies: Freeing land for natural succession is a worthwhile low-cost natural climate solution that has many co-benefits for biodiversity and other ecosystem services. A considerable risk, however, is C stock losses (i.e., emissions) due to disturbances or land conversion at a later time.

Rapid redistribution of agricultural land alters avian richness, abundance, and functional diversity

The conversion of natural, or seminatural, habitats to agricultural land and changes in agricultural land use are significant drivers of biodiversity loss. Within the context of land-sharing versus land-sparing debates, large-scale commercial agriculture is known to be detrimental to biodiversity, but the effects of small-scale subsistence farming on biodiversity are disputed. This poses a problem for sustainable land-use management in the Global South, where approximately 30% of farmland is small-scale. Following a rapid land redistribution program in Zimbabwe, we evaluated changes in avian biodiversity by examining richness, abundance, and functional diversity. Rapid land redistribution has, in the near term, resulted in increased avian abundance in newly farmed areas containing miombo woodland and open habitat. Conversion of seminatural ranched land to small-scale farms had a negative impact on larger-bodied birds, but species richness increased, and birds in some feeding guilds maintained or increased abundance. We found evidence that land-use change caused a shift in the functional traits of the communities present. However, functional analyses may not have adequately reflected the trait filtering effect of land redistribution on large species. Whether newly farmed landscapes in Zimbabwe can deliver multiple benefits in terms of food production and habitat for biodiversity in the longer term is an open question. When managing agricultural land transitions, relying on taxonomic measures of diversity, or abundance-weighted measures of function diversity, may obscure important information. If the value of smallholder-farmed land for birds is to be maintained or improved, it will be essential to ensure that a wide array of habitat types is retained alongside efforts to reduce hunting and persecution of large bird species.

Conversion of rainforest to oil palm and rubber plantations alters energy channels in soil food webs

In the last decades, lowland tropical rainforest has been converted in large into plantation systems. Despite the evident changes above ground, the effect of rainforest conversion on the channeling of energy in soil food webs was not studied. Here, we investigated community-level neutral lipid fatty acid profiles in dominant soil fauna to track energy channels in rainforest, rubber, and oil palm plantations in Sumatra, Indonesia. Abundant macrofauna including Araneae, Chilopoda, and Diplopoda contained high amounts of plant and fungal biomarker fatty acids (FAs). Lumbricina had the lowest amount of plant, but the highest amount of animal-synthesized C20 polyunsaturated FAs as compared to other soil taxa. Mesofauna detritivores (Collembola and Oribatida) contained high amounts of algal biomarker FAs. The differences in FA profiles between taxa were evident if data were analyzed across land-use systems, suggesting that soil fauna of different size (macro- and mesofauna) are associated with different energy channels. Despite that, rainforest conversion changed the biomarker FA composition of soil fauna at the community level. Conversion of rainforest into oil palm plantations enhanced the plant energy channel in soil food webs and reduced the bacterial energy channel; conversion into rubber plantations reduced the AMF-based energy channel. The changes in energy distribution within soil food webs may have significant implications for the functioning of tropical ecosystems and their response to environmental changes. At present, these responses are hard to predict considering the poor knowledge on structure and functioning of tropical soil food webs.

Butterflies embrace maladaptation and raise fitness in colonizing novel host

We illustrate an evolutionary host shift driven by increased fitness on a novel host, despite maladaptation to it in six separate host-adaptive traits. Here, local adaptation is defined as possession of traits that provide advantage in specific environmental contexts; thus individuals can have higher fitness in benign environments to which they are maladapted than in demanding environments to which they are well adapted. A population of the butterfly Euphydryas editha adapted to a long-lived, chemically well-defended host, Pedicularis, had traditionally been under natural selection to avoid the ephemeral, less-defended Collinsia. The lifespan of Collinsia was so short that it senesced before larvae entered diapause. After logging killed Pedicularis in clear-cut patches and controlled burning simultaneously extended Collinsia lifespan, insect fitness on Collinsia in clearings suddenly became higher than on Pedicularis in adjacent unlogged patches. Collinsia was rapidly colonized and preference for it evolved, but insects feeding on it retained adaptations to Pedicularis in alighting bias, two aspects of postalighting oviposition preference, dispersal bias, geotaxis, and clutch size, all acting as maladaptations to Collinsia. Nonetheless, populations boomed on Collinsia in clearings, creating sources that fed pseudosinks in unlogged patches where Pedicularis was still used. After c. 20 years, butterfly populations in clearings disappeared and the metapopulation reverted to Pedicularis-feeding. Here we show, via experimental manipulation of oviposition by local Pedicularis-adapted and imported Collinsia-adapted butterflies, that the highest survival at that time would have been from eggs laid in clearings by butterflies adapted to Collinsia. Second highest were locals on Pedicularis. In third place would have been locals on Collinsia in clearings, because local females maladaptively preferred senescent plants. Collinsia had been colonized despite maladaptation and, after successional changes, abandoned because of it. However, the abandoned Collinsia could still have provided the highest fitness, given appropriate adaptation. The butterflies had tumbled down an adaptive peak.

Habitat fragmentation is associated with dietary shifts and microbiota variability in common vampire bats

Host ecological factors and external environmental factors are known to influence the structure of gut microbial communities, but few studies have examined the impacts of environmental changes on microbiotas in free-ranging animals. Rapid land-use change has the potential to shift gut microbial communities in wildlife through exposure to novel bacteria and/or by changing the availability or quality of local food resources. The consequences of such changes to host health and fitness remain unknown and may have important implications for pathogen spillover between humans and wildlife. To better understand the consequences of land-use change on wildlife microbiotas, we analyzed long-term dietary trends, gut microbiota composition, and innate immune function in common vampire bats (Desmodus rotundus) in two nearby sites in Belize that vary in landscape structure. We found that vampire bats living in a small forest fragment had more homogenous diets indicative of feeding on livestock and shifts in microbiota heterogeneity, but not overall composition, compared to those living in an intact forest reserve. We also found that irrespective of sampling site, vampire bats which consumed relatively more livestock showed shifts in some core bacteria compared with vampire bats which consumed relatively less livestock. The relative abundance of some core microbiota members was associated with innate immune function, suggesting that future research should consider the role of the host microbiota in immune defense and its relationship to zoonotic infection dynamics. We suggest that subsequent homogenization of diet and habitat loss through livestock rearing in the Neotropics may lead to disruption to the microbiota that could have downstream impacts on host immunity and cross-species pathogen transmission.

Habitat associations of bats in a working rangeland landscape

Land-use change has resulted in rangeland loss and degradation globally. These changes include conversion of native grasslands for row-crop agriculture as well as degradation of remaining rangeland due to fragmentation and changing disturbance regimes. Understanding how these and other factors influence wildlife use of rangelands is important for conservation and management of wildlife populations. We investigated bat habitat associations in a working rangeland in southeastern North Dakota. We used Petterson d500x acoustic detectors to systematically sample bat activity across the study area on a 1-km point grid. We identified calls using Sonobat autoclassification software. We detected five species using this working rangeland, which included Lasionycteris noctivagans (2,722 detections), Lasiurus cinereus (2,055 detections), Eptesicus fuscus (749 detections), Lasiurus borealis (62 detections), and Myotis lucifugus (1 detection). We developed generalized linear mixed-effects models for the four most frequently detected species based on their ecology. The activity of three bat species increased with higher tree cover. While the scale of selection varied between the four species, all three investigated scales were explanatory for at least one bat species. The broad importance of trees to bats in rangelands may put their conservation needs at odds with those of obligate grassland species. Focusing rangeland bat conservation on areas that were treed prior to European settlement, such as riparian forests, can provide important areas for bat conservation while minimizing negative impacts on grassland species.

Soil nitrous oxide flux following land-use reversion from Miscanthus and SRC willow to perennial ryegrass

Decarbonization of the world's energy supply is essential to meet the targets of the 2016 Paris climate change agreement. One promising opportunity is the utilization of second generation, low input bioenergy crops such as Miscanthus and Short Rotation Coppice (SRC) willow. Research has previously been carried out on the greenhouse gas (GHG) balance of growing these feedstocks and land-use changes involved in converting conventional cropland to their production; however, there is almost no body of work understanding the costs associated with their end of life transitions back to conventional crops. It is likely that it is during crop interventions and land-use transitions that significant GHG fluxes might occur. Therefore, in this study, we investigated soil GHG fluxes over 82 weeks during transition from Miscanthus and SRC willow into perennial ryegrass in west Wales, UK. This study captured soil GHG fluxes at a weekly time step, alongside monthly changes in soil nitrogen and labile carbon and reports the results of regression modelling of suspected drivers. Methane fluxes were typically trivial; however, nitrous oxide (N2O) fluxes were notably affected, reverted plots produced significantly more N2O than retained controls and Miscanthus produced significantly higher fluxes overall than willow plots. N2O costs of reversion appeared to be contained within the first year of reversion when the Miscanthus plots produced an average pregrass flux of 0.13 mg N2O m-2 hr-1 while for willow, this was 0.03 mg N2O m-2 hr-1. Total N2O emission from reversion increased the carbon cost over the lifetime of the Miscanthus from 6.50 to 9.91 Mg CO2 eq. ha-1 while for the willow, this increase was from 9.61 to 10.42 Mg CO2 eq. ha-1. Despite these significant increases, the carbon cost of energy contained in these perennial crops remained far lower than the equivalent carbon cost of energy in coal.

A land classification protocol for pollinator ecology research: An urbanization case study

Land-use change is one of the most important drivers of widespread declines in pollinator populations. Comprehensive quantitative methods for land classification are critical to understanding these effects, but co-option of existing human-focussed land classifications is often inappropriate for pollinator research. Here, we present a flexible GIS-based land classification protocol for pollinator research using a bottom-up approach driven by reference to pollinator ecology, with urbanization as a case study. Our multistep method involves manually generating land cover maps at multiple biologically relevant radii surrounding study sites using GIS, with a focus on identifying land cover types that have a specific relevance to pollinators. This is followed by a three-step refinement process using statistical tools: (i) definition of land-use categories, (ii) principal components analysis on the categories, and (iii) cluster analysis to generate a categorical land-use variable for use in subsequent analysis. Model selection is then used to determine the appropriate spatial scale for analysis. We demonstrate an application of our protocol using a case study of 38 sites across a gradient of urbanization in South-East England. In our case study, the land classification generated a categorical land-use variable at each of four radii based on the clustering of sites with different degrees of urbanization, open land, and flower-rich habitat. Studies of land-use effects on pollinators have historically employed a wide array of land classification techniques from descriptive and qualitative to complex and quantitative. We suggest that land-use studies in pollinator ecology should broadly adopt GIS-based multistep land classification techniques to enable robust analysis and aid comparative research. Our protocol offers a customizable approach that combines specific relevance to pollinator research with the potential for application to a wide range of ecological questions, including agroecological studies of pest control.

Biogeophysical Impacts of Land-Use Change on Climate Extremes in Low-Emission Scenarios: Results From HAPPI-Land

The impacts of land use have been shown to have considerable influence on regional climate. With the recent international commitment to limit global warming to well below 2°C, emission reductions need to be ambitious and could involve major land-use change (LUC). Land-based mitigation efforts to curb emissions growth include increasing terrestrial carbon sequestration through reforestation, or the adoption of bioenergy crops. These activities influence local climate through biogeophysical feedbacks, however, it is uncertain how important they are for a 1.5° climate target. This was the motivation for HAPPI-Land: the half a degree additional warming, prognosis, and projected impacts-land-use scenario experiment. Using four Earth system models, we present the first multimodel results from HAPPI-Land and demonstrate the critical role of land use for understanding the characteristics of regional climate extremes in low-emission scenarios. In particular, our results show that changes in temperature extremes due to LUC are comparable in magnitude to changes arising from half a degree of global warming. We also demonstrate that LUC contributes to more than 20% of the change in temperature extremes for large land areas concentrated over the Northern Hemisphere. However, we also identify sources of uncertainty that influence the multimodel consensus of our results including how LUC is implemented and the corresponding biogeophysical feedbacks that perturb climate. Therefore, our results highlight the urgent need to resolve the challenges in implementing LUC across models to quantify the impacts and consider how LUC contributes to regional changes in extremes associated with sustainable development pathways.

Consensus, uncertainties and challenges for perennial bioenergy crops and land use

Perennial bioenergy crops have significant potential to reduce greenhouse gas (GHG) emissions and contribute to climate change mitigation by substituting for fossil fuels; yet delivering significant GHG savings will require substantial land-use change, globally. Over the last decade, research has delivered improved understanding of the environmental benefits and risks of this transition to perennial bioenergy crops, addressing concerns that the impacts of land conversion to perennial bioenergy crops could result in increased rather than decreased GHG emissions. For policymakers to assess the most cost-effective and sustainable options for deployment and climate change mitigation, synthesis of these studies is needed to support evidence-based decision making. In 2015, a workshop was convened with researchers, policymakers and industry/business representatives from the UK, EU and internationally. Outcomes from global research on bioenergy land-use change were compared to identify areas of consensus, key uncertainties, and research priorities. Here, we discuss the strength of evidence for and against six consensus statements summarising the effects of land-use change to perennial bioenergy crops on the cycling of carbon, nitrogen and water, in the context of the whole life-cycle of bioenergy production. Our analysis suggests that the direct impacts of dedicated perennial bioenergy crops on soil carbon and nitrous oxide are increasingly well understood and are often consistent with significant life cycle GHG mitigation from bioenergy relative to conventional energy sources. We conclude that the GHG balance of perennial bioenergy crop cultivation will often be favourable, with maximum GHG savings achieved where crops are grown on soils with low carbon stocks and conservative nutrient application, accruing additional environmental benefits such as improved water quality. The analysis reported here demonstrates there is a mature and increasingly comprehensive evidence base on the environmental benefits and risks of bioenergy cultivation which can support the development of a sustainable bioenergy industry.

Environmental change, shifting distributions, and habitat conservation plans: A case study of the California gnatcatcher

Many species have already experienced distributional shifts due to changing environmental conditions, and analyzing past shifts can help us to understand the influence of environmental stressors on a species as well as to analyze the effectiveness of conservation strategies. We aimed to (1) quantify regional habitat associations of the California gnatcatcher (Polioptila californica); (2) describe changes in environmental variables and gnatcatcher distributions through time; (3) identify environmental drivers associated with habitat suitability changes; and (4) relate habitat suitability changes through time to habitat conservation plans. Southern California's Western Riverside County (WRC), an approximately 4,675 km² conservation planning area. We assessed environmental correlates of distributional shifts of the federally threatened California gnatcatcher (hereafter, gnatcatcher) using partitioned Mahalanobis D² niche modeling for three time periods: 1980–1997, 1998–2003, and 2004–2012, corresponding to distinct periods in habitat conservation planning. Highly suitable gnatcatcher habitat was consistently warmer and drier and occurred at a lower elevation than less suitable habitat and consistently had more CSS, less agriculture, and less chaparral. However, its relationship to development changed among periods, mainly due to the rapid change in this variable. Likewise, other aspects of highly suitable habitat changed among time periods, which became cooler and higher in elevation. The gnatcatcher lost 11.7% and 40.6% of highly suitable habitat within WRC between 1980–1997 to 1998–2003, and 1998–2003 to 2004–2012, respectively. Unprotected landscapes lost relatively more suitable habitat (−64.3%) than protected landscapes (30.5%). Over the past four decades, suitable habitat loss within WRC, especially between the second and third time periods, was associated with temperature‐related factors coupled with landscape development across coastal sage scrub habitat; however, development appears to be driving change more rapidly than climate change. Our study demonstrates the importance of providing protected lands for potential suitable habitat in future scenarios.

A pantropical analysis of the impacts of forest degradation and conversion on local temperature

Temperature is a core component of a species' fundamental niche. At the fine scale over which most organisms experience climate (mm to ha), temperature depends upon the amount of radiation reaching the Earth's surface, which is principally governed by vegetation. Tropical regions have undergone widespread and extreme changes to vegetation, particularly through the degradation and conversion of rainforests. As most terrestrial biodiversity is in the tropics, and many of these species possess narrow thermal limits, it is important to identify local thermal impacts of rainforest degradation and conversion. We collected pantropical, site-level (<1 ha) temperature data from the literature to quantify impacts of land-use change on local temperatures, and to examine whether this relationship differed aboveground relative to belowground and between wet and dry seasons. We found that local temperature in our sample sites was higher than primary forest in all human-impacted land-use types (N = 113,894 daytime temperature measurements from 25 studies). Warming was pronounced following conversion of forest to agricultural land (minimum +1.6°C, maximum +13.6°C), but minimal and nonsignificant when compared to forest degradation (e.g., by selective logging; minimum +1°C, maximum +1.1°C). The effect was buffered belowground (minimum buffering 0°C, maximum buffering 11.4°C), whereas seasonality had minimal impact (maximum buffering 1.9°C). We conclude that forest-dependent species that persist following conversion of rainforest have experienced substantial local warming. Deforestation pushes these species closer to their thermal limits, making it more likely that compounding effects of future perturbations, such as severe droughts and global warming, will exceed species' tolerances. By contrast, degraded forests and belowground habitats may provide important refugia for thermally restricted species in landscapes dominated by agricultural land.

Environmental costs and benefits of growing Miscanthus for bioenergy in the UK

Planting the perennial biomass crop Miscanthus in the UK could offset 2-13 Mt oil eq. yr-1, contributing up to 10% of current energy use. Policymakers need assurance that upscaling Miscanthus production can be performed sustainably without negatively impacting essential food production or the wider environment. This study reviews a large body of Miscanthus relevant literature into concise summary statements. Perennial Miscanthus has energy output/input ratios 10 times higher (47.3 ± 2.2) than annual crops used for energy (4.7 ± 0.2 to 5.5 ± 0.2), and the total carbon cost of energy production (1.12 g CO2-C eq. MJ-1) is 20-30 times lower than fossil fuels. Planting on former arable land generally increases soil organic carbon (SOC) with Miscanthus sequestering 0.7-2.2 Mg C4-C ha-1 yr-1. Cultivation on grassland can cause a disturbance loss of SOC which is likely to be recovered during the lifetime of the crop and is potentially mitigated by fossil fuel offset. N2O emissions can be five times lower under unfertilized Miscanthus than annual crops and up to 100 times lower than intensive pasture. Nitrogen fertilizer is generally unnecessary except in low fertility soils. Herbicide is essential during the establishment years after which natural weed suppression by shading is sufficient. Pesticides are unnecessary. Water-use efficiency is high (e.g. 5.5-9.2 g aerial DM (kg H2O)-1, but high biomass productivity means increased water demand compared to cereal crops. The perennial nature and belowground biomass improves soil structure, increases water-holding capacity (up by 100-150 mm), and reduces run-off and erosion. Overwinter ripening increases landscape structural resources for wildlife. Reduced management intensity promotes earthworm diversity and abundance although poor litter palatability may reduce individual biomass. Chemical leaching into field boundaries is lower than comparable agriculture, improving soil and water habitat quality.

Soil carbon and belowground carbon balance of a short-rotation coppice: assessments from three different approaches

Uncertainty in soil carbon (C) fluxes across different land-use transitions is an issue that needs to be addressed for the further deployment of perennial bioenergy crops. A large-scale short-rotation coppice (SRC) site with poplar (Populus) and willow (Salix) was established to examine the land-use transitions of arable and pasture to bioenergy. Soil C pools, output fluxes of soil CO ₂, CH ₄, dissolved organic carbon (DOC) and volatile organic compounds, as well as input fluxes from litter fall and from roots, were measured over a 4-year period, along with environmental parameters. Three approaches were used to estimate changes in the soil C. The largest C pool in the soil was the soil organic carbon (SOC) pool and increased after four years of SRC from 10.9 to 13.9 kg C m^-2. The belowground woody biomass (coarse roots) represented the second largest C pool, followed by the fine roots (Fr). The annual leaf fall represented the largest C input to the soil, followed by weeds and Fr. After the first harvest, we observed a very large C input into the soil from high Fr mortality. The weed inputs decreased as trees grew older and bigger. Soil respiration averaged 568.9 g C m^-2 yr^-1. Leaching of DOC increased over the three years from 7.9 to 14.5 g C m^-2. The pool-based approach indicated an increase of 3360 g C m^-2 in the SOC pool over the 4-year period, which was high when compared with the -27 g C m^-2 estimated by the flux-based approach and the -956 g C m^-2 of the combined eddy-covariance + biometric approach. High uncertainties were associated to the pool-based approach. Our results suggest using the C flux approach for the assessment of the short-/medium-term SOC balance at our site, while SOC pool changes can only be used for long-term C balance assessments.

Land-use change promotes avian diversity at the expense of species with unique traits

Land‐use change may alter both species diversity and species functional diversity patterns. To test the idea that species diversity and functional diversity changes respond in differing ways to land‐use changes, we characterize the form of the change in bird assemblages and species functional traits along an intensifying gradient of land use in the savanna biome in a historically homogeneous vegetation type in Phalaborwa, South Africa. A section of this vegetation type has been untransformed, and the remainder is now mainly characterized by urban and subsistence agricultural areas. Using morphometric, foraging and breeding functional traits of birds, we estimate functional diversity changes. Bird species richness and abundance are generally higher in urban and subsistence agricultural land uses, as well as in the habitat matrix connecting these regions, than in the untransformed area, a pattern mainly driven through species replacement. Functionally unique species, particularly ground nesters of large body size, were, however, less abundant in more utilized land uses. For a previously homogenous vegetation type, declines in the seasonality of energy availability under land‐use change have led to an increase in local avian diversity, promoting the turnover of species, but reduced the abundance of functionally unique species. Although there is no simple relationship between land‐use and diversity change, land‐use change may suit some species, but such change may also involve functional homogenization.

Anthropogenic impacts on Costa Rican bat parasitism are sex specific

While anthropogenic impacts on parasitism of wildlife are receiving growing attention, whether these impacts vary in a sex-specific manner remains little explored. Differences between the sexes in the effect of parasites, linked to anthropogenic activity, could lead to uneven sex ratios and higher population endangerment. We sampled 1108 individual bats in 18 different sites across an agricultural mosaic landscape in southern Costa Rica to investigate the relationships between anthropogenic impacts (deforestation and reductions in host species richness) and bat fly ectoparasitism of 35 species of Neotropical bats. Although female and male bat assemblages were similar across the deforestation gradient, bat fly assemblages tracked their hosts closely only on female bats. We found that in female hosts, parasite abundance per bat decreased with increasing bat species richness, while in male hosts, parasite abundance increased. We hypothesize the differences in the parasite-disturbance relationship are due to differences in roosting behavior between the sexes. We report a sex-specific parasite-disturbance relationship and argue that sex differences in anthropogenic impacts on wildlife parasitism could impact long-term population health and survival.

Shifts in leaf litter breakdown along a forest-pasture-urban gradient in Andean streams

Tropical montane ecosystems of the Andes are critically threatened by a rapid land-use change which can potentially affect stream variables, aquatic communities, and ecosystem processes such as leaf litter breakdown. However, these effects have not been sufficiently investigated in the Andean region and at high altitude locations in general. Here, we studied the influence of land use (forest-pasture-urban) on stream physico-chemical variables (e.g., water temperature, nutrient concentration, and pH), aquatic communities (macroinvertebrates and aquatic fungi) and leaf litter breakdown rates in Andean streams (southern Ecuador), and how variation in those stream physico-chemical variables affect macroinvertebrates and fungi related to leaf litter breakdown. We found that pH, water temperature, and nutrient concentration increased along the land-use gradient. Macroinvertebrate communities were significantly different between land uses. Shredder richness and abundance were lower in pasture than forest sites and totally absent in urban sites, and fungal richness and biomass were higher in forest sites than in pasture and urban sites. Leaf litter breakdown rates became slower as riparian land use changed from natural to anthropogenically disturbed conditions and were largely determined by pH, water temperature, phosphate concentration, fungal activity, and single species of leaf-shredding invertebrates. Our findings provide evidence that leaf litter breakdown in Andean streams is sensitive to riparian land-use change, with urban streams being the most affected. In addition, this study highlights the role of fungal biomass and shredder species (Phylloicus; Trichoptera and Anchytarsus; Coleoptera) on leaf litter breakdown in Andean streams and the contribution of aquatic fungi in supporting this ecosystem process when shredders are absent or present low abundance in streams affected by urbanization. Finally, we summarize important implications in terms of managing of native vegetation and riparian buffers to promote ecological integrity and functioning of tropical Andean stream ecosystems.

Ecological traits affect the sensitivity of bees to land-use pressures in European agricultural landscapes

Bees are a functionally important and economically valuable group, but are threatened by land‐use conversion and intensification. Such pressures are not expected to affect all species identically; rather, they are likely to be mediated by the species' ecological traits.

Understanding which types of species are most vulnerable under which land uses is an important step towards effective conservation planning.

We collated occurrence and abundance data for 257 bee species at 1584 European sites from surveys reported in 30 published papers (70 056 records) and combined them with species‐level ecological trait data. We used mixed‐effects models to assess the importance of land use (land‐use class, agricultural use‐intensity and a remotely‐sensed measure of vegetation), traits and trait × land‐use interactions, in explaining species occurrence and abundance.

Species' sensitivity to land use was most strongly influenced by flight season duration and foraging range, but also by niche breadth, reproductive strategy and phenology, with effects that differed among cropland, pastoral and urban habitats.

Synthesis and applications. Rather than targeting particular species or settings, conservation actions may be more effective if focused on mitigating situations where species' traits strongly and negatively interact with land‐use pressures. We find evidence that low‐intensity agriculture can maintain relatively diverse bee communities; in more intensive settings, added floral resources may be beneficial, but will require careful placement with respect to foraging ranges of smaller bee species. Protection of semi‐natural habitats is essential, however; in particular, conversion to urban environments could have severe effects on bee diversity and pollination services. Our results highlight the importance of exploring how ecological traits mediate species responses to human impacts, but further research is needed to enhance the predictive ability of such analyses.

Rather than targeting particular species or settings, conservation actions may be more effective if focused on mitigating situations where species' traits strongly and negatively interact with land‐use pressures. We find evidence that low‐intensity agriculture can maintain relatively diverse bee communities; in more intensive settings, added floral resources may be beneficial, but will require careful placement with respect to foraging ranges of smaller bee species. Protection of semi‐natural habitats is essential, however; in particular, conversion to urban environments could have severe effects on bee diversity and pollination services. Our results highlight the importance of exploring how ecological traits mediate species responses to human impacts, but further research is needed to enhance the predictive ability of such analyses.