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Bertinetti S, Ardini F, Vecchio MA, Caiazzo L, Grotti M. Isotopic analysis of snow from Dome C indicates changes in the source of atmospheric lead over the last fifty years in East Antarctica. CHEMOSPHERE 2020; 255:126858. [PMID: 32387726 DOI: 10.1016/j.chemosphere.2020.126858] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2020] [Revised: 04/15/2020] [Accepted: 04/19/2020] [Indexed: 06/11/2023]
Abstract
Lead (Pb) concentration and Pb isotope ratios have been determined in 109 snow pit samples collected at Dome C, on the East Antarctic Plateau, corresponding to the period 1971-2017. The Pb concentration was 8.2 ± 1.0 pg g-1 (mean ± 95%-confidence interval), with a decreasing trend from the early 1990s (the median Pb concentration halved from 9.0 pg g-1 in 1970-1980 to 4.4 pg g-1 in 2010-2017). The 206Pb/207Pb and 208Pb/207Pb ratios were 2.419 ± 0.003 and 1.158 ± 0.003 (mean and 95%-confidence interval), respectively. The temporal variations of Pb isotopic composition from 1970 to mid-1990s reflect the changes in the consumption of Pb-enriched gasoline in the Southern Hemisphere, whereas the subsequent increase of the Pb isotope ratios is ascribed to a shift toward the natural isotopic signature. Accordingly, the anthropogenic Pb contribution decreased from (61 ± 3)% in 1980-1990 to (49 ± 10)% in 2010-2017. The measured ratios suggest that Australia has been a significant source of anthropogenic Pb to Antarctica, even in recent times. Differences and similarities among Pb content and isotopic composition in various sites across Antarctica have been displayed by principal component analysis, indicating that the altitude and the distance from the coast significantly affect the Pb content, while the Pb isotopic signatures are not influenced by these parameters.
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402
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Espejo W, Padilha JDA, Kidd KA, Dorneles P, Malm O, Chiang G, Celis JE. Concentration and Trophic Transfer of Copper, Selenium, and Zinc in Marine Species of the Chilean Patagonia and the Antarctic Peninsula Area. Biol Trace Elem Res 2020; 197:285-293. [PMID: 31828723 DOI: 10.1007/s12011-019-01992-0] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/04/2019] [Accepted: 11/22/2019] [Indexed: 10/25/2022]
Abstract
Patagonia and Antarctica are biodiverse regions in the Southern Hemisphere, but little is known about the levels of trace elements in marine organisms from these remote coastal ecosystems. In this study, selenium (Se), copper (Cu), zinc (Zn), and stable isotopes of nitrogen (δ15N; relative trophic level) were measured in 36 marine species collected from two locations of the Chilean Patagonia and two locations of the Antarctic Peninsula area to determine whether biomagnification of these trace elements occurs in the food webs. Results indicated that Cu, Se, and Zn levels were slightly lower than those in similar species from elsewhere, and the highest metal levels were found in marine macroinvertebrates compared with fishes. There was evidence of Cu, Se, and Zn biomagnification but only within the lower-trophic-level organisms. When assessing whole food webs, levels of these elements typically decreased from macroinvertebrates to fishes or birds, suggesting lower risks of metal toxicity to higher-level consumers.
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403
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Illuminati S, Annibaldi A, Bau S, Scarchilli C, Ciardini V, Grigioni P, Girolametti F, Vagnoni F, Scarponi G, Truzzi C. Seasonal Evolution of Size-Segregated Particulate Mercury in the Atmospheric Aerosol Over Terra Nova Bay, Antarctica. Molecules 2020; 25:molecules25173971. [PMID: 32878154 PMCID: PMC7504777 DOI: 10.3390/molecules25173971] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2020] [Revised: 08/27/2020] [Accepted: 08/28/2020] [Indexed: 11/16/2022] Open
Abstract
Size-fractionated particulate mercury (PHg) measurements were performed from November 2017 to January 2018 at Terra Nova Bay (Antarctica) for the first time. Samples were collected every 10 days by a six-stage high-volume cascade impactor with size classes between 10 μm and 0.49 μm. Total PHg concentrations were maxima (87 ± 8 pg m−3) in November, then decreased to values ~40% lower and remained almost constant until the end of the sampling period (~30 pg m−3). The trimodal aerosol mass distribution reveals that from 30% to 90% of the total PHg came in the size > 1.0 μm. Hg in the two coarse fractions was probably produced by the adsorption of oxidized Hg species transported by air masses from the Antarctic plateau or produced locally by sea ice edges. PHg in accumulation mode seemed to be related to gas–particle partitioning with sea salt aerosol. Finally, average dry deposition fluxes of PHg were calculated to be 0.36 ± 0.21 ng m−2 d−1 in the accumulation mode, 47 ± 44 ng m−2 d−1 in the first coarse mode, and 37 ± 31 ng m−2 d−1 in the second coarse mode. The present work contributed to the comprehension of the Hg biogeochemical cycle, but further research studies are needed.
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404
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Dillon ML, Hawes I, Jungblut AD, Mackey TJ, Eisen JA, Doran PT, Sumner DY. Energetic and Environmental Constraints on the Community Structure of Benthic Microbial Mats in Lake Fryxell, Antarctica. FEMS Microbiol Ecol 2020; 96:5697196. [PMID: 31905236 PMCID: PMC6974422 DOI: 10.1093/femsec/fiz207] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2019] [Accepted: 01/03/2020] [Indexed: 11/13/2022] Open
Abstract
Ecological communities are regulated by the flow of energy through environments. Energy flow is typically limited by access to photosynthetically active radiation (PAR) and oxygen concentration (O2). The microbial mats growing on the bottom of Lake Fryxell, Antarctica, have well-defined environmental gradients in PAR and (O2). We analyzed the metagenomes of layers from these microbial mats to test the extent to which access to oxygen and light controls community structure. We found variation in the diversity and relative abundances of Archaea, Bacteria and Eukaryotes across three (O2) and PAR conditions: high (O2) and maximum PAR, variable (O2) with lower maximum PAR, and low (O2) and maximum PAR. We found distinct communities structured by the optimization of energy use on a millimeter-scale across these conditions. In mat layers where (O2) was saturated, PAR structured the community. In contrast, (O2) positively correlated with diversity and affected the distribution of dominant populations across the three habitats, suggesting that meter-scale diversity is structured by energy availability. Microbial communities changed across covarying gradients of PAR and (O2). The comprehensive metagenomic analysis suggests that the benthic microbial communities in Lake Fryxell are structured by energy flow across both meter- and millimeter-scales.
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405
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Holochová P, Mašlaňová I, Sedláček I, Švec P, Králová S, Kovařovic V, Busse HJ, Staňková E, Barták M, Pantůček R. Description of Massilia rubra sp. nov., Massilia aquatica sp. nov., Massilia mucilaginosa sp. nov., Massilia frigida sp. nov., and one Massilia genomospecies isolated from Antarctic streams, lakes and regoliths. Syst Appl Microbiol 2020; 43:126112. [PMID: 32847787 DOI: 10.1016/j.syapm.2020.126112] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2020] [Revised: 07/01/2020] [Accepted: 07/02/2020] [Indexed: 11/24/2022]
Abstract
Bacteria of the genus Massilia often colonize extreme ecosystems, however, a detailed study of the massilias from the Antarctic environment has not yet been performed. Here, sixty-four Gram-stain-negative, aerobic, motile rods isolated from different environmental samples on James Ross Island (Antarctica) were subjected to a polyphasic taxonomic study. The psychrophilic isolates exhibited slowly growing, moderately slimy colonies revealing bold pink-red pigmentation on R2A agar. The set of strains exhibited the highest 16S rRNA gene sequence similarities (99.5-99.9%) to Massilia violaceinigra B2T and Massilia atriviolacea SODT and formed several phylogenetic groups based on the analysis of gyrB and lepA genes. Phenotypic characteristics allowed four of them to be distinguished from each other and from their closest relatives. Compared to the nearest phylogenetic neighbours the set of six genome-sequenced representatives exhibited considerable phylogenetic distance at the whole-genome level. Bioinformatic analysis of the genomic sequences revealed a high number of putative genes involved in oxidative stress response, heavy-metal resistance, bacteriocin production, the presence of putative genes involved in nitrogen metabolism and auxin biosynthesis. The identification of putative genes encoding aromatic dioxygenases suggests the biotechnology potential of the strains. Based on these results four novel species and one genomospecies of the genus Massilia are described and named Massilia rubra sp. nov. (P3094T=CCM 8692T=LMG 31213T), Massilia aquatica sp. nov. (P3165T=CCM 8693T=LMG 31211T), Massilia mucilaginosa sp. nov. (P5902T=CCM 8733T=LMG 31210T), and Massilia frigida sp. nov. (P5534T=CCM 8695T=LMG 31212T).
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406
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Biersma EM, Convey P, Wyber R, Robinson SA, Dowton M, van de Vijver B, Linse K, Griffiths H, Jackson JA. Latitudinal Biogeographic Structuring in the Globally Distributed Moss Ceratodon purpureus. FRONTIERS IN PLANT SCIENCE 2020; 11:502359. [PMID: 32983208 PMCID: PMC7484499 DOI: 10.3389/fpls.2020.502359] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/02/2019] [Accepted: 08/13/2020] [Indexed: 06/11/2023]
Abstract
Biogeographic patterns of globally widespread species are expected to reflect regional structure, as well as connectivity caused by occasional long-distance dispersal. We assessed the level and drivers of population structure, connectivity, and timescales of population isolation in one of the most widespread and ruderal plants in the world - the common moss Ceratodon purpureus. We applied phylogenetic, population genetic, and molecular dating analyses to a global (n = 147) sampling data set, using three chloroplast loci and one nuclear locus. The plastid data revealed several distinct and geographically structured lineages, with connectivity patterns associated with worldwide, latitudinal "bands." These imply that connectivity is strongly influenced by global atmospheric circulation patterns, with dispersal and establishment beyond these latitudinal bands less common. Biogeographic patterns were less clear within the nuclear marker, with gene duplication likely hindering the detection of these. Divergence time analyses indicated that the current matrilineal population structure in C. purpureus has developed over the past six million years, with lineages diverging during the late Miocene, Pliocene, and Quaternary. Several colonization events in the Antarctic were apparent, as well as one old and distinct Antarctic clade, possibly isolated on the continent since the Pliocene. As C. purpureus is considered a model organism, the matrilineal biogeographic structure identified here provides a useful framework for future genetic and developmental studies on bryophytes. Our general findings may also be relevant to understanding global environmental influences on the biogeography of other organisms with microscopic propagules (e.g., spores) dispersed by wind.
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407
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Ibrahim S, Abdul Khalil K, Zahri KNM, Gomez-Fuentes C, Convey P, Zulkharnain A, Sabri S, Alias SA, González-Rocha G, Ahmad SA. Biosurfactant Production and Growth Kinetics Studies of the Waste Canola Oil-Degrading Bacterium Rhodococcus erythropolis AQ5-07 from Antarctica. Molecules 2020; 25:E3878. [PMID: 32858796 PMCID: PMC7503493 DOI: 10.3390/molecules25173878] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2020] [Revised: 07/27/2020] [Accepted: 07/28/2020] [Indexed: 11/26/2022] Open
Abstract
With the progressive increase in human activities in the Antarctic region, the possibility of domestic oil spillage also increases. Developing means for the removal of oils, such as canola oil, from the environment and waste "grey" water using biological approaches is therefore desirable, since the thermal process of oil degradation is expensive and ineffective. Thus, in this study an indigenous cold-adapted Antarctic soil bacterium, Rhodococcus erythropolis strain AQ5-07, was screened for biosurfactant production ability using the multiple approaches of blood haemolysis, surface tension, emulsification index, oil spreading, drop collapse and "MATH" assay for cellular hydrophobicity. The growth kinetics of the bacterium containing different canola oil concentration was studied. The strain showed β-haemolysis on blood agar with a high emulsification index and low surface tension value of 91.5% and 25.14 mN/m, respectively. Of the models tested, the Haldane model provided the best description of the growth kinetics, although several models were similar in performance. Parameters obtained from the modelling were the maximum specific growth rate (qmax), concentration of substrate at the half maximum specific growth rate, Ks% (v/v) and the inhibition constant Ki% (v/v), with values of 0.142 h-1, 7.743% (v/v) and 0.399% (v/v), respectively. These biological coefficients are useful in predicting growth conditions for batch studies, and also relevant to "in field" bioremediation strategies where the concentration of oil might need to be diluted to non-toxic levels prior to remediation. Biosurfactants can also have application in enhanced oil recovery (EOR) under different environmental conditions.
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408
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Habib S, Ahmad SA, Wan Johari WL, Abd Shukor MY, Alias SA, Smykla J, Saruni NH, Abdul Razak NS, Yasid NA. Production of Lipopeptide Biosurfactant by a Hydrocarbon-Degrading Antarctic Rhodococcus. Int J Mol Sci 2020; 21:ijms21176138. [PMID: 32858859 PMCID: PMC7504157 DOI: 10.3390/ijms21176138] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2020] [Revised: 08/05/2020] [Accepted: 08/08/2020] [Indexed: 12/19/2022] Open
Abstract
Rhodococci are renowned for their great metabolic repertoire partly because of their numerous putative pathways for large number of specialized metabolites such as biosurfactant. Screening and genome-based assessment for the capacity to produce surface-active molecules was conducted on Rhodococcus sp. ADL36, a diesel-degrading Antarctic bacterium. The strain showed a positive bacterial adhesion to hydrocarbon (BATH) assay, drop collapse test, oil displacement activity, microplate assay, maximal emulsification index at 45% and ability to reduce water surface tension to < 30 mN/m. The evaluation of the cell-free supernatant demonstrated its high stability across the temperature, pH and salinity gradient although no correlation was found between the surface and emulsification activity. Based on the positive relationship between the assessment of macromolecules content and infrared analysis, the extracted biosurfactant synthesized was classified as a lipopeptide. Prediction of the secondary metabolites in the non-ribosomal peptide synthetase (NRPS) clusters suggested the likelihood of the surface-active lipopeptide production in the strain’s genomic data. This is the third report of surface-active lipopeptide producers from this phylotype and the first from the polar region. The lipopeptide synthesized by ADL36 has the prospect to be an Antarctic remediation tool while furnishing a distinctive natural product for biotechnological application and research.
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409
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Raymond JA, Morgan-Kiss R, Stahl-Rommel S. Glycerol Is an Osmoprotectant in Two Antarctic Chlamydomonas Species From an Ice-Covered Saline Lake and Is Synthesized by an Unusual Bidomain Enzyme. FRONTIERS IN PLANT SCIENCE 2020; 11:1259. [PMID: 32973829 PMCID: PMC7468427 DOI: 10.3389/fpls.2020.01259] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/18/2020] [Accepted: 07/30/2020] [Indexed: 06/11/2023]
Abstract
Glycerol, a compatible solute, has previously been found to act as an osmoprotectant in some marine Chlamydomonas species and several species of Dunaliella from hypersaline ponds. Recently, Chlamydomonas reinhardtii and Dunaliella salina were shown to make glycerol with an unusual bidomain enzyme, which appears to be unique to algae, that contains a phosphoserine phosphatase and glycerol-3-phosphate dehydrogenase. Here we report that two psychrophilic species of Chlamydomonas (C. spp. UWO241 and ICE-MDV) from Lake Bonney, Antarctica also produce high levels of glycerol to survive in the lake's saline waters. Glycerol concentration increased linearly with salinity and at 1.3 M NaCl, exceeded 400 mM in C. sp. UWO241, the more salt-tolerant strain. We also show that both species expressed several isoforms of the bidomain enzyme. An analysis of one of the isoforms of C. sp. UWO241 showed that it was strongly upregulated by NaCl and is thus the likely source of glycerol. These results reveal another adaptation of the Lake Bonney Chlamydomonas species that allow them to survive in an extreme polar environment.
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410
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Frame B, Hemmings AD. Coronavirus at the end of the world: Antarctica matters. ACTA ACUST UNITED AC 2020; 2:100054. [PMID: 34173494 PMCID: PMC7437483 DOI: 10.1016/j.ssaho.2020.100054] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2020] [Revised: 08/10/2020] [Accepted: 08/11/2020] [Indexed: 12/01/2022]
Abstract
The potential impact of coronavirus in Antarctica through tourism and scientific research as well as the Antarctic Treaty System is reviewed over three time periods. In the short term, to April 2021, Antarctic tourism and field-based research will be severely reduced. The impact on Antarctic governance means that few, if any, international meetings will take place thereby leaving discussions on issues, such as fishing quotas, uncertain. Looking to the medium term, to April 2024, polar tourism is unlikely to have recovered and may face collapse unless alternatives are developed. Scientific research, organised through National Antarctic Programs could be reduced due to the economics of a global recession. Moving to a long-term view of six years or so, in terms of scientific activity, this will be highly dependent on the role and status of science in society following the pandemic and the extent to which science funding gets drawn into the economics of the recession. It is unlikely that cruise tourism will have regained its previous volumes though fishing, especially if food security becomes a major issue, is likely to increase pressure on environmental management mechanisms. Both these aspects will continue to put demands on the Antarctic Treaty System and its ability to respond to a fast changing global situation. In this latter sense, it could provide valuable lessons, and also learn from, for other global agreements such as climate change and biodiversity. Short and medium term implications of Covid-19 for Antarctica are described. This includes cancelled tourism, reduced field research and weakened governance. Possible long-term scientific, economic and governance implications are derived.
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411
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Abstract
Penguins are the only extant family of flightless diving birds. They currently comprise at least 18 species, distributed from polar to tropical environments in the Southern Hemisphere. The history of their diversification and adaptation to these diverse environments remains controversial. We used 22 new genomes from 18 penguin species to reconstruct the order, timing, and location of their diversification, to track changes in their thermal niches through time, and to test for associated adaptation across the genome. Our results indicate that the penguin crown-group originated during the Miocene in New Zealand and Australia, not in Antarctica as previously thought, and that Aptenodytes is the sister group to all other extant penguin species. We show that lineage diversification in penguins was largely driven by changing climatic conditions and by the opening of the Drake Passage and associated intensification of the Antarctic Circumpolar Current (ACC). Penguin species have introgressed throughout much of their evolutionary history, following the direction of the ACC, which might have promoted dispersal and admixture. Changes in thermal niches were accompanied by adaptations in genes that govern thermoregulation and oxygen metabolism. Estimates of ancestral effective population sizes (N e ) confirm that penguins are sensitive to climate shifts, as represented by three different demographic trajectories in deeper time, the most common (in 11 of 18 penguin species) being an increased N e between 40 and 70 kya, followed by a precipitous decline during the Last Glacial Maximum. The latter effect is most likely a consequence of the overall decline in marine productivity following the last glaciation.
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412
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Porto BA, da Silva TH, Machado MR, de Oliveira FS, Rosa CA, Rosa LH. Diversity and distribution of cultivable fungi present in acid sulphate soils in chronosequence under para-periglacial conditions in King George Island, Antarctica. Extremophiles 2020; 24:797-807. [PMID: 32789694 DOI: 10.1007/s00792-020-01195-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2020] [Accepted: 08/03/2020] [Indexed: 12/01/2022]
Abstract
We recovered 85 fungal isolates from the acid sulphate soils in chronosequence under para-periglacial conditions in King George Island, Antarctica. Thirty-two taxa belonging to the phylum Ascomycota, Basidiomycota and Mortierellomycota were identified. Mortierella amoeboidea, Mortierella sp. 2, Mortierella sp. 3, Penicillium sp. 2 and Penicillium sp. 3 dominated the sulphite soils. Despite the multi-extreme physic-chemical conditions of the sulphate soils (low pH, variable content of macro and micronutrients and organic matter), the fungal assemblages exhibited moderate diversity indices, which ranged according to the degree of soil development. Soils with more weathered and, consequently, with highest values of organic carbon shelter the most diverse fungal assemblages, which can be associated with the occurrence of sulphurisation and sulphide oxidation. Different taxa of Mortierella and Penicillium displayed broad pH (3-9) and temperature (5-35 °C) plasticity. The multi-extreme sulphite soils of Antarctica revealed the presence of moderate fungal diversity comprising cold cosmopolitan and psychrophilic endemic taxa. Among these, Mortierella and Penicillium, known to survive in extreme conditions such as low temperature and available organic matter, low pH and high concentrations of metals, might represent interesting techniques to be used in biotechnological processes such as bioleaching in metallurgy and phosphate solubilisation in agriculture.
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413
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Microbial Communities in Permafrost Soils of Larsemann Hills, Eastern Antarctica: Environmental Controls and Effect of Human Impact. Microorganisms 2020; 8:microorganisms8081202. [PMID: 32784619 PMCID: PMC7464515 DOI: 10.3390/microorganisms8081202] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Revised: 08/04/2020] [Accepted: 08/05/2020] [Indexed: 11/16/2022] Open
Abstract
Although ice-free areas cover only about 0.1% of Antarctica and are characterized by harsh environmental conditions, these regions provide quite diverse conditions for the soil-forming process, having various physical and geochemical properties, and also assuring different conditions for living organisms. This study is aimed to determine existing soil microbial communities, their relationship with soil parameters and the influence of anthropogenic activity in Larsemann Hills, Eastern Antarctica. The soil microbiome was investigated at different locations using 16S rRNA gene pyrosequencing. The taxonomic analysis of the soil microbiomes revealed 12 predominant bacterial and archaeal phyla—Proteobacteria, Actinobacteria, Acidobacteria, Chloroflexi, Gemmatimonadetes, Verrucomicrobia, Planctomycetes, Bacteroidetes, Armatimonadetes, Firmicutes, Cyanobacteria, Thaumarchaeota. Some specific phyla have been also found in sub-surface horizons of soils investigated, thus providing additional evidence of the crucial role of gravel pavement in saving the favorable conditions for both soil and microbiome development. Moreover, our study also revealed that some bacterial species might be introduced into Antarctic soils by human activities. We also assessed the effect of different soil parameters on microbial community in the harsh environmental conditions of Eastern Antarctica. pH, carbon and nitrogen, as well as fine earth content, were revealed as the most accurate predictors of soil bacterial community composition.
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414
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Perera-Castro AV, Waterman MJ, Turnbull JD, Ashcroft MB, McKinley E, Watling JR, Bramley-Alves J, Casanova-Katny A, Zuniga G, Flexas J, Robinson SA. It Is Hot in the Sun: Antarctic Mosses Have High Temperature Optima for Photosynthesis Despite Cold Climate. FRONTIERS IN PLANT SCIENCE 2020; 11:1178. [PMID: 32922412 PMCID: PMC7457050 DOI: 10.3389/fpls.2020.01178] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2020] [Accepted: 07/21/2020] [Indexed: 05/05/2023]
Abstract
The terrestrial flora of Antarctica's frozen continent is restricted to sparse ice-free areas and dominated by lichens and bryophytes. These plants frequently battle sub-zero temperatures, extreme winds and reduced water availability; all influencing their ability to survive and grow. Antarctic mosses, however, can have canopy temperatures well above air temperature. At midday, canopy temperatures can exceed 15°C, depending on moss turf water content. In this study, the optimum temperature of photosynthesis was determined for six Antarctic moss species: Bryum pseudotriquetrum, Ceratodon purpureus, Chorisodontium aciphyllum, Polytrichastrum alpinum, Sanionia uncinata, and Schistidium antarctici collected from King George Island (maritime Antarctica) and/or the Windmill Islands, East Antarctica. Both chlorophyll fluorescence and gas exchange showed maximum values of electron transport rate occurred at canopy temperatures higher than 20°C. The optimum temperature for both net assimilation of CO2 and photoprotective heat dissipation of three East Antarctic species was 20-30°C and at temperatures below 10°C, mesophyll conductance did not significantly differ from 0. Maximum mitochondrial respiration rates occurred at temperatures higher than 35°C and were lower by around 80% at 5°C. Despite the extreme cold conditions that Antarctic mosses face over winter, the photosynthetic apparatus appears optimised to warm temperatures. Our estimation of the total carbon balance suggests that survival in this cold environment may rely on a capacity to maximize photosynthesis for brief periods during summer and minimize respiratory carbon losses in cold conditions.
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415
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Identification of Circovirus Genome in a Chinstrap Penguin ( Pygoscelis antarcticus) and Adélie Penguin ( Pygoscelis adeliae) on the Antarctic Peninsula. Viruses 2020; 12:v12080858. [PMID: 32781620 PMCID: PMC7472332 DOI: 10.3390/v12080858] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2020] [Revised: 08/01/2020] [Accepted: 08/03/2020] [Indexed: 12/21/2022] Open
Abstract
Circoviruses infect a variety of animal species and have small (~1.8–2.2 kb) circular single-stranded DNA genomes. Recently a penguin circovirus (PenCV) was identified associated with an Adélie Penguin (Pygoscelis adeliae) with feather disorder and in the cloacal swabs of three asymptomatic Adélie Penguins at Cape Crozier, Antarctica. A total of 75 cloacal swab samples obtained from adults and chicks of three species of penguin (genus: Pygoscelis) from seven Antarctic breeding colonies (South Shetland Islands and Western Antarctic Peninsula) in the 2015−2016 breeding season were screened for PenCV. We identified new variants of PenCV in one Adélie Penguin and one Chinstrap Penguin (Pygoscelis antarcticus) from Port Charcot, Booth Island, Western Antarctic Peninsula, a site home to all three species of Pygoscelid penguins. These two PenCV genomes (length of 1986 nucleotides) share > 99% genome-wide nucleotide identity with each other and share ~87% genome-wide nucleotide identity with the PenCV sequences described from Adélie Penguins at Cape Crozier ~4400 km away in East Antarctica. We did not find any evidence of recombination among PenCV sequences. This is the first report of PenCV in Chinstrap Penguins and the first detection outside of Ross Island, East Antarctica. Given the limited knowledge on Antarctic animal viral diversity, future samples from Antarctic wildlife should be screened for these and other viruses to determine the prevalence and potential impact of viral infections.
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416
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Zaccara S, Patiño J, Convey P, Vanetti I, Cannone N. Multiple colonization and dispersal events hide the early origin and induce a lack of genetic structure of the moss Bryum argenteum in Antarctica. Ecol Evol 2020; 10:8959-8975. [PMID: 32884671 PMCID: PMC7452785 DOI: 10.1002/ece3.6601] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2020] [Revised: 06/24/2020] [Accepted: 06/26/2020] [Indexed: 11/16/2022] Open
Abstract
The dispersal routes of taxa with transoceanic disjunctions remain poorly understood, with the potential roles of Antarctica not yet demonstrated. Mosses are suitable organisms to test direct intra-Antarctic dispersal, as major component of the extant Antarctic flora, with the cosmopolitan moss Bryum argenteum as ideal target species. We analyzed the genetic structure of B. argenteum to provide an evolutionary time frame for its radiation and shed light into its historical biogeography in the Antarctic region. We tested two alternative scenarios: (a) intra-Antarctic panmixia and (b) intra-Antarctic genetic differentiation. Furthermore, we tested for evidence of the existence of specific intra-Antarctic dispersal routes. Sixty-seven new samples (40 collected in Antarctica) were sequenced for ITS nrDNA and rps4 cpDNA regions, and phylogenetic trees of B. argenteum were constructed, with a focus on its Southern Hemisphere. Combining our new nrDNA dataset with previously published datasets, we estimated time-calibrated phylogenies based on two different substitution rates (derived from angiosperms and bryophytes) along with ancestral area estimations. Minimum spanning network and pairwise genetic distances were also calculated. B. argenteum was potentially distributed across Africa and Antarctica soon after its origin. Its earliest intra-Antarctic dispersal and diversification occurred during a warming period in the Pliocene. On the same timescale, a radiation took place involving a dispersal event from Antarctica to the sub-Antarctic islands. A more recent event of dispersal and diversification within Antarctica occurred during a warm period in the Pleistocene, creating favorable conditions also for its colonization outside the Antarctic continent worldwide. We provide evidence supporting the hypothesis that contemporary populations of B. argenteum in Antarctica integrate a history of both multiple long-range dispersal events and local persistence combined with in situ diversification. Our data support the hypothesis that B. argenteum has been characterized by strong connectivity within Antarctica, suggesting the existence of intra-Antarctic dispersal routes.
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417
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Ibañez AE, Morales LM, Torres DS, Borghello P, Haidr NS, Montalti D. Plastic ingestion risk is related to the anthropogenic activity and breeding stage in an Antarctic top predator seabird species. MARINE POLLUTION BULLETIN 2020; 157:111351. [PMID: 32658703 DOI: 10.1016/j.marpolbul.2020.111351] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2020] [Revised: 06/03/2020] [Accepted: 06/03/2020] [Indexed: 06/11/2023]
Abstract
During the last decades plastic pollution has become a common issue in marine environments. Studies on seabirds have focused on species that ingest plastics mistaken for prey or indirectly through their preferred prey or, on how foraging strategy influences this behaviour. We evaluated plastic ingestion in relation to the proximity of nests to areas with different anthropogenic pressure, breeding status and breeding stage. We analyzed regurgitated pellets (n = 1001) from a seabird, the Brown Skua (Stercorarius antarcticus lonnbergi) at Esperanza/Hope Bay, Antarctic Peninsula. Plastics were found in 9% of pellets, only in breeders from an area with high antropogenic activity. The prevalence of plastic increased during the brooding of chicks stage, when skuas expand their feeding niche. Our results support previous work which demonstrated that seabirds with wider feeding niche show higher loads of plastics. Altogether, this provides insights into the dynamics of plastic transfer within the environment.
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418
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Potocka M, Krzemińska E, Gromadka R, Gawor J, Kocot-Zalewska J. Molecular identification of Trichocera maculipennis, an invasive fly species in the Maritime Antarctic. Mol Biol Rep 2020. [PMID: 32524389 DOI: 10.1007/s11033-020-05566-53594] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/14/2023]
Abstract
Trichocera maculipennis, an invasive Diptera, was described for the first time in Antarctica in 2006 in a sewage system of one of the scientific stations on King George Island, South Shetland Islands, and started to increase its distribution within the island. To date, only taxonomical description of this species, based on morphological data has been available, as there were no molecular data recorded. In the present study, we present two methods of molecular identification of this species-based on partial cytochrome c oxidase subunit I (COI) and 16S ribosomal RNA (16S) genes. An appropriate and easy-to-use assay for proper and fast identification of invasive species is a key requirement for further management decisions, especially in such a fragile environment as found in terrestrial Antarctica.
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419
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Ausems ANMA, Skrzypek G, Wojczulanis-Jakubas K, Jakubas D. Sharing menus and kids' specials: Inter- and intraspecific differences in stable isotope niches between sympatrically breeding storm-petrels. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 728:138768. [PMID: 32339838 DOI: 10.1016/j.scitotenv.2020.138768] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2020] [Revised: 04/15/2020] [Accepted: 04/15/2020] [Indexed: 06/11/2023]
Abstract
Species sharing resources are predicted to compete, but co-occurring species can avoid competition through niche partitioning. Here, we investigated the inter- and intra-specific differences using stable isotope analyses in the black-bellied storm-petrel (Fregetta tropica) and the Wilson's storm-petrel (Oceanites oceanicus), breeding sympatrically in maritime Antarctica. We analysed stable carbon, nitrogen and oxygen isotopes in samples representing different life stages; chick down (pre-laying females), chick feather (chick), and adult blood (chick-rearing adults). Pre-laying females had wider stable isotope niches than chicks or chick-rearing adults, due to pre-laying females being free roaming while chick-rearing adults were central-place-foragers. Chicks were fed at a higher trophic level than the adults (higher δ15N), likely to compensate for the high nutritional demands of the growing chicks. Wilson's storm-petrels showed substantial overlap in stable isotope niches between all life stages, while the black-bellied storm-petrel chicks showed very little overlap. Wilson's storm-petrel niches significantly overlapped with those of pre-laying and chick-rearing black-bellied storm-petrels, suggesting negligible niche partitioning. Chick growth rate was negatively correlated with chick δ15N values, suggesting nutritional stress resulting in the use endogenous instead of dietary amino acids in protein synthesis. The higher trophic level of the relatively larger black-bellied storm-petrel chicks may be due to their longer stay in the nest, and relatively larger body mass gain, despite chick growth rates being similar to the smaller Wilson's storm-petrel chicks. Despite breeding sympatrically, the studied storm-petrel species showed considerable overlap in isotopic niches, which may be explained by sharing the same main prey species, reducing the detectability of foraging niche partitioning through stable isotope analyses. We found dietary shifts in black-bellied storm-petrels that are absent in Wilson's, showing different chick provisioning strategies, and shows that the high productivity of the Antarctic marine ecosystem may facilitate foraging niche overlap of sympatrically living species.
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420
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Ruiz MB, Taverna A, Servetto N, Sahade R, Held C. Hidden diversity in Antarctica: Molecular and morphological evidence of two different species within one of the most conspicuous ascidian species. Ecol Evol 2020; 10:8127-8143. [PMID: 32788966 PMCID: PMC7417227 DOI: 10.1002/ece3.6504] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2020] [Revised: 05/27/2020] [Accepted: 06/03/2020] [Indexed: 12/16/2022] Open
Abstract
The Southern Ocean is one of the most isolated marine ecosystems, characterized by high levels of endemism, diversity, and biomass. Ascidians are among the dominant groups in Antarctic benthic assemblages; thus, recording the evolutionary patterns of this group is crucial to improve our current understanding of the assembly of this polar ocean. We studied the genetic variation within Cnemidocarpa verrucosa sensu lato, one of the most widely distributed abundant and studied ascidian species in Antarctica. Using a mitochondrial and a nuclear gene (COI and 18S), the phylogeography of fifteen populations distributed along the West Antarctic Peninsula and Burdwood Bank/MPA Namuncurá (South American shelf) was characterized, where the distribution of the genetic distance suggested the existence of, at least, two species within nominal C. verrucosa. When reevaluating morphological traits to distinguish between genetically defined species, the presence of a basal disk in one of the genotypes could be a diagnostic morphological trait to differentiate the species. These results are surprising due to the large research that has been carried out with the conspicuous C. verrucosa with no differentiation between species. Furthermore, it provides important tools to distinguish species in the field and laboratory. But also, these results give new insights into patterns of differentiation between closely related species that are distributed in sympatry, where the permeability of species boundaries still needs to be well understood.
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421
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Thurber AR, Seabrook S, Welsh RM. Riddles in the cold: Antarctic endemism and microbial succession impact methane cycling in the Southern Ocean. Proc Biol Sci 2020; 287:20201134. [PMID: 32693727 PMCID: PMC7423672 DOI: 10.1098/rspb.2020.1134] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Abstract
Antarctica is estimated to contain as much as a quarter of earth's marine methane, however we have not discovered an active Antarctic methane seep limiting our understanding of the methane cycle. In 2011, an expansive (70 m × 1 m) microbial mat formed at 10 m water depth in the Ross Sea, Antarctica which we identify here to be a high latitude hydrogen sulfide and methane seep. Through 16S rRNA gene analysis on samples collected 1 year and 5 years after the methane seep formed, we identify the taxa involved in the Antarctic methane cycle and quantify the response rate of the microbial community to a novel input of methane. One year after the seep formed, ANaerobic MEthane oxidizing archaea (ANME), the dominant sink of methane globally, were absent. Five years later, ANME were found to make up to 4% of the microbial community, however the dominant member of this group observed (ANME-1) were unexpected considering the cold temperature (-1.8°C) and high sulfate concentrations (greater than 24 mM) present at this site. Additionally, the microbial community had not yet formed a sufficient filter to mitigate the release of methane from the sediment; methane flux from the sediment was still significant at 3.1 mmol CH4 m-2 d-1. We hypothesize that this 5 year time point represents an early successional stage of the microbiota in response to methane input. This study provides the first report of the evolution of a seep system from a non-seep environment, and reveals that the rate of microbial succession may have an unrealized impact on greenhouse gas emission from marine methane reservoirs.
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422
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Pomerleau P, Royer A, Langlois A, Cliche P, Courtemanche B, Madore JB, Picard G, Lefebvre É. Low Cost and Compact FMCW 24 GHz Radar Applications for Snowpack and Ice Thickness Measurements. SENSORS 2020; 20:s20143909. [PMID: 32674328 PMCID: PMC7412166 DOI: 10.3390/s20143909] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/01/2020] [Revised: 07/07/2020] [Accepted: 07/09/2020] [Indexed: 11/16/2022]
Abstract
Monitoring the evolution of snow on the ground and lake ice—two of the most important components of the changing northern environment—is essential. In this paper, we describe a lightweight, compact and autonomous 24 GHz frequency-modulated continuous-wave (FMCW) radar system for freshwater ice thickness and snow mass (snow water equivalent, SWE) measurements. Although FMCW radars have a long-established history, the novelty of this research lies in that we take advantage the availability of a new generation of low cost and low power requirement units that facilitates the monitoring of snow and ice at remote locations. Test performance (accuracy and limitations) is presented for five different applications, all using an automatic operating mode with improved signal processing: (1) In situ lake ice thickness measurements giving 2 cm accuracy up to ≈1 m ice thickness and a radar resolution of 4 cm; (2) remotely piloted aircraft-based lake ice thickness from low-altitude flight at 5 m; (3) in situ dry SWE measurements based on known snow depth, giving 13% accuracy (RMSE 20%) over boreal forest, subarctic taiga and Arctic tundra, with a measurement capability of up to 3 m in snowpack thickness; (4) continuous monitoring of surface snow density under particular Antarctic conditions; (5) continuous SWE monitoring through the winter with a synchronized and collocated snow depth sensor (ultrasonic or LiDAR sensor), giving 13.5% bias and 25 mm root mean square difference (RMSD) (10%) for dry snow. The need for detection processing for wet snow, which strongly absorbs radar signals, is discussed. An appendix provides 24 GHz simulated effective refractive index and penetration depth as a function of a wide range of density, temperature and wetness for ice and snow.
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423
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Liu L, He Y, Wang K, Miao J, Zheng Z. The complete mitochondrial genome of Antarctic Phaeodactylum tricornutum ICE-H. MITOCHONDRIAL DNA PART B-RESOURCES 2020; 5:2754-2755. [PMID: 33457936 PMCID: PMC7783064 DOI: 10.1080/23802359.2020.1788441] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
In this study, the complete mitochondrial genome (mtDNA) of the Antarctic Phaeodactylum tricornutum ICE-H was sequenced using Illumina NovaSeq PE150. The circular mtDNA was 77055 bp in size and encodes 60 genes, contains 24 tRNA genes, 34 protein-coding genes, and 2 rRNA genes. The composition of A + T in ICE-H mtDNA was 65.34%. The phylogenetic relationship of 17 species of plant mitochondria were analyzed using the maximum likelihood method by the MEGA-X. Phaeodactylum tricornutum ICE-H was most closely related to Phaeodactylum tricornutum.
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424
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Liu Q, Jiang Y. Application of microbial network analysis to discriminate environmental heterogeneity in Fildes Peninsula, Antarctica. MARINE POLLUTION BULLETIN 2020; 156:111244. [PMID: 32510386 DOI: 10.1016/j.marpolbul.2020.111244] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2019] [Revised: 04/26/2020] [Accepted: 05/04/2020] [Indexed: 06/11/2023]
Abstract
In order to determine the practicability of developing a protocol for bioassessing polar marine environment based on network analysis, microplankton communities and co-occurrence patterns at Ardley Cove and Great Wall Cove (King George Island, Antarctica) were studied in January 2016 through high-through sequencing. The spatial patterns and significant differences between community structures in two coves clearly reflect those in environmental heterogeneity. Moreover, both coves had their discriminated network structure and keystones. Then multivariate analyses to quantify the relationship between environmental variation and planktonic microbes response, give further evidence that nitrate and temperature, alone or in combination with other several parameters, structuring the communities respectively indeed. This study presents the first detailed description on co-occurrence networks between microbes and local environmental parameters in Antarctic coastal water. These findings suggest that co-occurrence networks based on planktonic microbes have the robust potential to assess environmental heterogeneity in polar marine ecosystem.
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425
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Lewis PJ, McGrath TJ, Emmerson L, Allinson G, Shimeta J. Adélie penguin colonies as indicators of brominated flame retardants (BFRs) in East Antarctica. CHEMOSPHERE 2020; 250:126320. [PMID: 32126331 DOI: 10.1016/j.chemosphere.2020.126320] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2019] [Revised: 02/17/2020] [Accepted: 02/22/2020] [Indexed: 06/10/2023]
Abstract
While persistent organic pollutant (POP) contamination within Antarctica is largely caused by long-range atmospheric transport (LRAT), Antarctic research bases have been shown to be local sources of POPs such as brominated flame retardants (BFRs). This study compared concentrations of seven polybrominated diphenyl ethers (PBDE) congeners and five novel flame retardants (NBFRs) found in Adélie penguin (Pygoscelis adeliae) colony soils near the Australian research stations, Mawson and Davis, to assess the stations as local sources of these contaminants and provide a much needed baseline for contamination of BFRs in East Antarctica. Soil samples (n = 46) were collected from Adélie colonies at close proximity to the research stations as well as further afield during the 2016-17 austral summer. Samples were analysed using selective pressurised liquid extraction (S-PLE) and gas chromatography coupled to tandem mass spectrometry (GC-MS/MS). PBDEs (BDE-28, -47, -99, -100, -153, -154 and -183) were detected in 45/46 samples with ∑7PBDE concentrations ranging from <0.01 to 1.63 ng/g dry weight (dw) and NBFRs (2,3,4,5,6-pentabromotoluene (PBT), 2,3,4,5,6-pentabromoethylbenzene (PBEB), hexabromobenzene (HBB), 2-ethylhexyl-2,3,4,5-tetrabromobenzoate (EH-TBB) and bis(2,4,6-tribromophenoxy) ethane (BTBPE)) detected in 20/46 samples, with a range of ∑5NBFR from not detected (ND) to 0.16 ng/g dw. Soils taken from around the Davis and Mawson research stations were more highly contaminated (n = 10) than penguin colonies (n = 27) and control areas not affiliated with breeding seabirds (n = 8). The most common congener detected was BDE-99, reflecting inputs from LRAT. However, the congener profiles of station soils supported the hypothesis that research stations are a local source of PBDEs to the Antarctic environment. In addition, the NBFR pentabromoethylbenzene (PBEB) was quantified for the first time in Antarctic soils, providing essential information for baseline contamination within the region and highlighting the need for ongoing monitoring as global regulations for the use of BFRs continuously change.
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