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Li HC, Lu HB, Yang FY, Liu SJ, Bai CJ, Zhang YW. Cloning and sequence analysis of sucrose phosphate synthase gene from varieties of Pennisetum species. GENETICS AND MOLECULAR RESEARCH 2015; 14:2799-808. [PMID: 25867429 DOI: 10.4238/2015.march.31.10] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Sucrose phosphate synthase (SPS) is an enzyme used by higher plants for sucrose synthesis. In this study, three primer sets were designed on the basis of known SPS sequences from maize (GenBank: NM_001112224.1) and sugarcane (GenBank: JN584485.1), and five novel SPS genes were identified by RT-PCR from the genomes of Pennisetum spp (the hybrid P. americanum x P. purpureum, P. purpureum Schum., P. purpureum Schum. cv. Red, P. purpureum Schum. cv. Taiwan, and P. purpureum Schum. cv. Mott). The cloned sequences showed 99.9% identity and 80-88% similarity to the SPS sequences of other plants. The SPS gene of hybrid Pennisetum had one nucleotide and four amino acid polymorphisms compared to the other four germplasms, and cluster analysis was performed to assess genetic diversity in this species. Additional characterization of the SPS gene product can potentially allow Pennisetum to be exploited as a biofuel source.
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Cong LL, Zhang XQ, Yang FY, Liu SJ, Zhang YW. Isolation of the P5CS gene from reed canary grass and its expression under salt stress. GENETICS AND MOLECULAR RESEARCH 2014; 13:9122-33. [PMID: 25366804 DOI: 10.4238/2014.october.31.28] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Reed canary grass (RCG) is a perennial grass traditionally cultivated for forage. It is also used as fuel to produce energy in Finland and Sweden, and other countries have expressed interest in the cultivation of RCG. In China, arable land is limited. Salinity is considered to be a major factor limiting plant crop development and productivity. To boost biofuel production of RCG and extend its range in saline soil, we seek to improve its salt tolerance. Proline acts as an osmolyte that accumulates when plants are subjected to abiotic stress. P5CS plays a crucial role in proline biosynthesis. We isolated a P5CS gene from RCG, designated B231P5CS (GenBank accession No. JQ622685). B231P5CS is a fragment (971 bp) that encodes a 323-amino acid polypeptide. We also cloned an actin gene fragment from RCG as a reference gene in expression analysis of B231P5CS gene. Expression analysis revealed that B231P5CS transcripts were upregulated in leaves after treatment with salt (200 mM NaCl) and that transcript levels of B231P5CS reached a maximum 12 h after exposure, which was 14.69 times the level in control plants. The trends of expression were exactly opposite in roots; transcripts were downregulated after salt treatment. Proline concentration increased in leaves after stress. In contrast, proline content of roots decreased up to 3.6-fold relative to controls. Changes in proline concentration after stress were correlated with B231P5CS expression. Our results suggest that B231P5CS is a stress-inducible gene and plays a non-redundant role in plant development. This gene may be used to improve stress tolerance of RGC and other bioenergy feedstock.
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Liu QH, Yang FY, Zhang JG, Shao T. Characteristics of Lactobacillus parafarraginis ZH1 and its role in improving the aerobic stability of silages. J Appl Microbiol 2014; 117:405-16. [PMID: 24766633 DOI: 10.1111/jam.12530] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2013] [Revised: 04/09/2014] [Accepted: 04/10/2014] [Indexed: 11/29/2022]
Abstract
AIMS Lactobacillus parafarraginis ZH1 isolated from silage was characterized, and the effects of inoculating ZH1 and Lact. buchneri (LB) on the aerobic stability of sweet corn stalk (SCS) silage and whole-plant oat (WPO) silage ensiled at 15 and 30°C were studied. METHODS AND RESULTS After ensiling of SCS or WPO in plastic bottle silo for 45 days, silos were opened, and aerobic stability was studied by monitoring temperature change with thermo recorders in silage for 6 days. SCS silage and WPO silage were well conserved naturally at both storage temperatures. However, silages were prone to aerobic deterioration due to the presence of residual yeasts. ZH1 inoculated silages ensiled at both temperatures, LB inoculated silages ensiled at 30°C had better aerobic stability than the uninoculated silages and the LB-inoculated silage at 15°C. CONCLUSIONS Strain ZH1 improved the aerobic stability of SCS silage and WPO silage ensiled at both 15 and 30°C, while LB improved the aerobic stability of silage only ensiled at the high temperature of 30°C. SIGNIFICANCE AND IMPACT OF THE STUDY The new strain ZH1 can be used as an effective inhibitor for aerobic deterioration of silage maintained from 15 to 30°C.
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Wang HL, Du CH, Pu Y, Adur R, Hammel PC, Yang FY. Scaling of spin Hall angle in 3d, 4d, and 5d metals from Y3Fe5O12/metal spin pumping. PHYSICAL REVIEW LETTERS 2014; 112:197201. [PMID: 24877962 DOI: 10.1103/physrevlett.112.197201] [Citation(s) in RCA: 89] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/23/2013] [Indexed: 06/03/2023]
Abstract
We have investigated spin pumping from Y3Fe5O12 thin films into Cu, Ag, Ta, W, Pt, and Au with varying spin-orbit coupling strengths. From measurements of Gilbert damping enhancement and inverse spin Hall signals spanning 3 orders of magnitude, we determine the spin Hall angles and interfacial spin mixing conductances for the six metals. The spin Hall angles largely vary as Z(4) (Z: atomic number), corroborating the role of spin-orbit coupling. Amongst the four 5d metals, the variation of the spin Hall angle is dominated by the sensitivity of the d-orbital moment to the d-electron count, confirming theoretical predictions.
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Du CH, Wang HL, Pu Y, Meyer TL, Woodward PM, Yang FY, Hammel PC. Probing the spin pumping mechanism: exchange coupling with exponential decay in Y3Fe5O12/barrier/Pt heterostructures. PHYSICAL REVIEW LETTERS 2013; 111:247202. [PMID: 24483695 DOI: 10.1103/physrevlett.111.247202] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2013] [Indexed: 06/03/2023]
Abstract
It is widely believed that the mechanism for spin pumping in ferromagnet-nonmagnet bilayers is the exchange interaction between the ferromagnet and nonmagnetic material. We observe 1000-fold exponential decay of spin pumping from thin Y3Fe5O12 films to Pt across insulating barriers, from which exponential decay lengths of 0.16, 0.19, and 0.23 nm are extracted for oxide barriers having band gaps of 4.91, 3.40, and 2.36 eV, respectively. This archetypal signature of quantum tunneling through a barrier underscores the importance of exchange coupling for spin pumping and reveals its dependence on the characteristics of the barrier material.
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Yang FY, Li Y, Li WT, Wang ZC. Traveling waves in a nonlocal dispersal Kermack-McKendrick
epidemic model. ACTA ACUST UNITED AC 2013. [DOI: 10.3934/dcdsb.2013.18.1969] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Zhou RJ, Xu HJ, Fu JF, Yang FY, Liu Z. First Report of Sclerotinia Rot of Chinese Atractylodes Caused by Sclerotinia nivalis in China. PLANT DISEASE 2012; 96:1823. [PMID: 30727265 DOI: 10.1094/pdis-06-12-0516-pdn] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Chinese atractylodes (Atractylodes japonica Koidz.ez Kitam.) is a perennial herb in the Compositae family, and is widely distributed in China. The dried rhizomes of the plant are used in traditional Chinese medicine. During the summer of 2011, typical signs and symptoms of Sclerotinia rot were observed on Chinese atractylodes in a production field of Liaoning Province of China. Symptoms were observed in plants at the flowering stage, distributed in patches throughout the rows, and with a disease incidence of approximately 10 to 15%. The lower mature leaves of infected plants first became yellow and wilted, basal stem areas showed a black-brown rot at the same time under conditions of high humidity, and white cottony mycelium formed along the basal stem and soil surfaces. Ultimately, the basal stem and roots rotted and the plants wilted and died quickly. Black, irregular sclerotia (average 0.8 to 6.9 mm in diameter) were also observed within the pith cavity of split stems and rotted roots. The pathogen was isolated from symptomatic tissues and sclerotia, surface disinfested with 2% sodium hypochlorite, and cultured on potato dextrose agar (PDA) (1). The fungus was mesophilic, with an optimum temperature for mycelial growth in culture of about 20°C. Colonies on PDA produced masses of white aerial mycelium, with small white flocci distributed among sclerotia. After 2 weeks, sclerotia 0.5 to 4.5 mm in diameter were produced near the margin in a uniform distribution. Sclerotia were spherical, elongated, or fused to form irregular shapes and tightly attached to the agar surface by their under surface, which could be seen through the bottom of the petri dishes. DNA sequences of five replicates were obtained using the TianGen DNA secure plant kit. The internal transcribed spacer (ITS) region of rDNA was amplified with primers ITS1/ITS4 and sequenced. BLAST analysis of the 513-bp segment showed high similarity (99%) with a sequence of Sclerotinia nivalis (GenBank Accession No. AB516670). A representative sequence was deposited in GenBank (Accession No. JX294862). The fungus isolated from symptomatic tissues was identified as S. nivalis Saito on the basis of morphological and cultural characteristics (2,3) and ITS sequence analysis. Symptoms were reproduced in the greenhouse by inoculating the basal stem and roots of 15 atractylodes plants at the 7- to 10-leaf stage. Inoculum was prepared by macerating 14-day-old PDA cultures of the fungus in a blender and placing the mixture (approximately 20 g) into the potting medium of each plant. Sterile PDA was used to inoculate the five control plants. Plants were maintained in a greenhouse at 22 to 25°C and about 75% relative humidity. After 7 to 10 days, symptoms were similar to those in the fields. Lower leaves of inoculated plants became yellow and wilted, and infected plants died 2 weeks after inoculation, whereas control plants remained healthy. The pathogen was successfully recovered from symptomatic tissues, completing Koch's postulates. To our knowledge, this is the first report of Sclerotinia rot of Chinese atractylodes. Given its wide host range, S. nivalis has great potential to become an economically important plant pathogen. References: (1) W. G. Kim and W. D. Cho. Mycobiology 30:41, 2002. (2) G. Q. Li et al. Mycol. Res. 104:232, 2000. (3) I. Saito. Mycoscience 38:227, 1997.
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Chang D, Yang FY, Yan JJ, Wu YQ, Bai SQ, Liang XZ, Zhang YW, Gan YM. SRAP analysis of genetic diversity of nine native populations of wild sugarcane, Saccharum spontaneum, from Sichuan, China. GENETICS AND MOLECULAR RESEARCH 2012; 11:1245-53. [PMID: 22614352 DOI: 10.4238/2012.may.9.3] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Saccharum spontaneum is a wild sugarcane species that is native to and widely distributed in China. It has been extensively used in sugarcane breeding programs, and is being tested for the development of bioenergy cultivars. In order to provide basic information for the exploitation of this species, we analyzed genetic variation among and within native S. spontaneum populations collected from Sichuan, China. Eighty plants from nine native populations were sampled. Twenty-one sequence-related amplified polymorphism primer pairs generated 235 clearly scorable bands, of which 185 were polymorphic (78.7%). Nei's genetic diversity was 0.2801 and Shannon's information index was 0.4155 across the populations. Genetic diversity parameters, G(ST) value (0.2088) and N(m) value (1.8944), showed that the genetic variation within populations was greater than that among populations. In the cluster analysis, one major grouping was formed by populations from Ya'an and another one by populations from Sichuan basin; a population from Baoxing formed a single cluster. In order to fully comprehend the genetic diversity of cold-tolerant local germplasm in this species, germplasm should be collected from the heterogeneous environments along the northern regions of this species' distribution. The germplasm that we collected should be a valuable resource for Saccharum breeding.
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Chen A, Vieira G, Henighan T, Howdyshell M, North JA, Hauser AJ, Yang FY, Poirier MG, Jayaprakash C, Sooryakumar R. Regulating Brownian fluctuations with tunable microscopic magnetic traps. PHYSICAL REVIEW LETTERS 2011; 107:087206. [PMID: 21929204 PMCID: PMC3896074 DOI: 10.1103/physrevlett.107.087206] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2011] [Indexed: 05/15/2023]
Abstract
A major challenge to achieving positional control of fluid borne submicron sized objects is regulating their Brownian fluctuations. We present a magnetic-field-based trap that regulates the thermal fluctuations of superparamagnetic beads in suspension. Local domain-wall fields originating from patterned magnetic wires, whose strength and profile are tuned by weak external fields, enable the bead trajectories within the trap to be managed and easily varied between strong confinements and delocalized spatial excursions that are described remarkably well by simulations.
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Cao MJ, Liu YQ, Wang XF, Yang FY, Zhou CY. First Report of Citrus bark cracking viroid and Citrus viroid V Infecting Citrus in China. PLANT DISEASE 2010; 94:922. [PMID: 30743578 DOI: 10.1094/pdis-94-7-0922c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Citrus is the most cultivated and highest value crop in the 15 southern provinces and municipalities in South China. Trifoliate orange (Poncirus trifoliata) is the main rootstock for citrus cultivars and is known to be susceptible to citrus viroids. Surveys conducted from 1995 to 2007 revealed 42 symptomatic samples from 33 cultivars (21 from sweet oranges (Citrus sinensis), 6 from mandarins (C. reticulata), 2 from satauma mandarins (C. unshiu), 6 from lemons (C. jambhiri), and 7 from mandarin hybrids). Symptoms included stunting, bark scaling, and cracking on the Trifoliate orange rootstock collected from citrus orchards in the Chongqing municipality, Sichuan, Zhejiang, Jiangxi, Hunan, and Yunnan provinces. Of the 42 samples, 27 were cultivars imported from abroad and 15 were local cultivars. Budwood from infected trees were grafted onto Arizona 861-S1 'Etrog citron' (C. medica) on rough lemon (C. jambhiri) rootstock. After more than 12 months, 39 of 42 samples revealed typical viroid symptoms of stunting, epinasty. and leaf rolling on the Etrog indicator plants. In September 2009, total RNA was extracted with TRIZOL Reagent and a one-step multiplex reverse transcription (RT)-PCR assay (3) was used to detect simultaneously Citrus exocortis viroid (CEVd), Citrus bent leaf viroid (CBLVd), Hop stunt viroid (HSVd), and Citrus dwarfing viroid (CDVd). Also, a one-step RT-PCR protocol using two primer pairs targeting the complete genome sequences was used to detect Citrus bark cracking viroid (CBCVd) (1) and Citrus viroid V (CVd-V) (2). Of the 42 samples, 37 and 35 were positive for HSVd and CDVd, respectively. CEVd and CBLVd were found, respectively, in 14 and 13 of 42 samples. CBCVd was detected in cv. Meishan No. 9 (C. sinensis) from Sichuan Province and cvs. Akemi (C. reticulata) and Nishirokaori (C. reticulata) from Zhejiang Province. CVd-V was detected in cvs. Nishirokaori, Haruka (C. tamuranua), and Kiyomi (C. unshiu × C. sinensis) from Zhejiang, Hunan, and Chongqing Province, respectively. Only Meishan No. 9 is a local cultivar, whereas Akemi, Nishirokaori, Haruka, and Kiyomi are cultivars imported from Japan. Of 42 samples, 3 without typical symptoms on Etrog citrons were infected with HSVd only. Of 42 infected citrus plants, 36 harbored more than one viroid species. RT-PCR products of CBCVd and CVd-V were cloned by standard methods. Eight clones for CBCVd (one from Meishan No. 9 [Accession No. HM042742, 284 bp], three from Akemi [Accession Nos. HM042743-HM042745, 283 to 284 bp], and four from Nishirokaori [Accession Nos. HM042746-HM042749, 286 bp]) and six clones for CVd-V (four from Nishirokaori [Accession Nos. HM042750-HM042753, 294 bp], one from Kiyomi [Accession No. HM042754, 294 bp], and one from Haruka [Accession No. HM042755, 294 bp]) were sequenced and deposited in GenBank. BLAST analysis of the CBCVd (Accession No. HM042742) and CVd-V (Accession No. HM042751) sequences revealed highest nucleotide sequence identity (100 and 96%) to a CBCVd isolate from Cuba (Accession No. AJ630360) and a CVd-V isolate from Spain (Accession No. EF617306), respectively. To our knowledge, this is the first report of CBCVd and CVd-V in China. Our finding emphasizes the need for CBCVd and CVd-V indexing in production and distribution of pathogen-free citrus plants in China. References: (1) L. Bernard and N. Duran-Vila. Mol. Cell. Probes 20:105, 2006. (2) P. Serra et al. Phytopathology 98:1199, 2008. (3) X. F. Wang et al. Eur. J. Plant. Pathol. 124:175, 2009.
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Henighan T, Chen A, Vieira G, Hauser AJ, Yang FY, Chalmers JJ, Sooryakumar R. Manipulation of magnetically labeled and unlabeled cells with mobile magnetic traps. Biophys J 2010; 98:412-7. [PMID: 20141754 DOI: 10.1016/j.bpj.2009.10.036] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2009] [Revised: 10/05/2009] [Accepted: 10/26/2009] [Indexed: 10/19/2022] Open
Abstract
A platform of discrete microscopic magnetic elements patterned on a surface offers dynamic control over the motion of fluid-borne cells by reprogramming the magnetization within the magnetic bits. T-lymphocyte cells tethered to magnetic microspheres and untethered leukemia cells are remotely manipulated and guided along desired trajectories on a silicon surface by directed forces with average speeds up to 20 microm/s. In addition to navigating cells, the microspheres can be operated from a distance to push biological and inert entities and act as local probes in fluidic environments.
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Vieira G, Henighan T, Chen A, Hauser AJ, Yang FY, Chalmers JJ, Sooryakumar R. Magnetic wire traps and programmable manipulation of biological cells. PHYSICAL REVIEW LETTERS 2009; 103:128101. [PMID: 19792462 PMCID: PMC3928075 DOI: 10.1103/physrevlett.103.128101] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2009] [Indexed: 05/07/2023]
Abstract
We present a multiplex method, based on microscopic programmable magnetic traps in zigzag wires patterned on a platform, to simultaneously apply directed forces on multiple fluid-borne cells or biologically inert magnetic microparticles or nanoparticles. The gentle tunable forces do not produce damage and retain cell viability. The technique is demonstrated with T-lymphocyte cells remotely manipulated (by a joystick) along desired trajectories on a silicon surface with average speeds up to 20 microm/s.
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Lu E, Ingram DC, Smith AR, Knepper JW, Yang FY. Reconstruction control of magnetic properties during epitaxial growth of ferromagnetic Mn3-deltaGa on Wurtzite GaN(0001). PHYSICAL REVIEW LETTERS 2006; 97:146101. [PMID: 17155269 DOI: 10.1103/physrevlett.97.146101] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2006] [Indexed: 05/12/2023]
Abstract
Binary ferromagnetic Mn(3-delta)Ga (1.2<3-delta< or =1.5) crystalline thin films have been epitaxially grown on wurtzite GaN(0001) surfaces using rf N-plasma molecular beam epitaxy. The film structure is face-centered tetragonal with CuAu type-I (L1(0)) ordering with (111) orientation. The in-plane epitaxial relationship to GaN is nearly ideal with [110](MnGa) parallel[1100](GaN) and [112](MnGa) parallel[1120](GaN). We observe magnetic anisotropy along both the in-plane and out-of-plane directions. The magnetic moments are found to depend on the Mn/(Mn+Ga) flux ratio and can be controlled by observation of the surface reconstruction during growth, which varies from 1x1 to 2x2 with increasing Mn stoichiometry.
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Shin PKS, Cheung PH, Yang FY, Cheung SG. Intermittent exposure to reduced oxygen levels affects prey size selection and consumption in swimming crab Thalamita danae Stimpson. MARINE POLLUTION BULLETIN 2005; 51:1003-9. [PMID: 15893334 DOI: 10.1016/j.marpolbul.2005.04.023] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
Portunid crabs Thalamita danae (carapace width: 46-56 mm) were exposed to low oxygen level (4.0 mg O2 l(-1)) and hypoxia (1.5 mg O2 l(-1)) for 6 h each day with three size classes (large: 15.0-19.9 mm, medium: 10.0-14.9 mm, small: 5.0-9.9 mm) of mussels Brachidontes variabilis offered as food. Consumption rate, prey size preference, and prey handling including breaking time, handling time, eating time and prey value, were studied during the time the crabs were exposed to reduced oxygen levels and results were compared with the crabs maintained at high oxygen level (8.0 mg O2 l(-1)) throughout the experiment. Consumption of mussels from all size classes was significantly higher at high oxygen level than at reduced oxygen levels. No mussel size preference was observed for crabs exposed to 4.0 or 8.0 mg O2 l(-1) but those crabs exposed to 1.5 mg O2 l(-1) preferred medium mussels. Both breaking time and handling time increased with mussel size but did not vary with oxygen level. Prey value of each mussel consumed (mg dry wt eaten crab(-1) s(-1)) was calculated by dividing the estimated dry weight of the mussel by the observed handling time. Mean prey value varied significantly with mussel size, with values obtained for large mussels being higher than small mussels at 4.0 and 8.0 mg O2 l(-1); the effect of oxygen level, however, was insignificant. In view of portunid crabs as major predators of mussels, results may help explain dominance of mussels in eutrophic harbours in Hong Kong.
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Yang FY, Chien CL. Oscillatory exchange bias due to an antiferromagnet with incommensurate spin-density waves. PHYSICAL REVIEW LETTERS 2003; 90:147201. [PMID: 12731943 DOI: 10.1103/physrevlett.90.147201] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2002] [Indexed: 05/24/2023]
Abstract
Oscillatory exchange bias in both magnitude and in sign has been observed in epitaxial (100)Cr/Ni(81)Fe19 bilayers due to the incommensurate spin-density waves in antiferromagnetic (100)Cr layers. Salient effects due to the spin-flip transition between longitudinal and transverse spin-density waves as well as that of expanding wavelength have been observed.
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Lin SB, Ts'o PO, Sun SK, Choo KB, Yang FY, Lim YP, Tsai HL, Au LC. Inhibition of thymidylate synthase activity by antisense oligodeoxynucleotide and possible role in thymineless treatment. Mol Pharmacol 2001; 60:474-9. [PMID: 11502877] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/21/2023] Open
Abstract
Thymidylate synthase (TS) is an important target for chemotherapeutic treatment of cancer. However, efficacy of TS-targeted anticancer drugs is limited by the development of drug resistance as a result of TS gene amplification. In this work, a phosphorothioated antisense oligonucleotide (ODN), designated ATS-2, was used to suppress cellular synthesis of TS. ATS-2 at 0.2 microM concentration was mixed with lipofectin in a charge ratio of 1:1 and was used to treat the human embryonic kidney (HEK) cell line. A reduction of TS mRNA and protein was achieved. Furthermore, a dose-dependent reduction of cumulative viable cells of up to 98% was observed. Flow cytometer analysis of cell cycle progression indicates that ATS-2-treated cells were arrested and went into apoptosis at the S phase, possibly because of thymidine shortage, suggesting that ATS-2 is specifically effective for dividing cells. When used in combination with the anticancer drug FdUrd, ATS-2 exerted a additive inhibitory effect on cellular proliferation. To elucidate the possible role of cellular thymidine kinase (TdR kinase) in ATS-2 treatment, a second cell line, HeLa, was used. Both HEK and HeLa have similar rates of cell division and ODN uptake. In contrast to HEK, which was shown to have very low levels of TdR kinase activity in [(3)H]thymidine incorporation experiments, [(3)H]thymidine incorporation in HeLa was 15-fold greater than that of HEK. We found that HeLa cells were sensitive to FdUrd but were rather resistant to ATS-2. On the contrary, HEK cells were sensitive to ATS-2 but insensitive to FdUrd. Effects of ATS-2 and FdUrd are, therefore, complementary in thymineless treatment too.
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Ji Y, Strijkers GJ, Yang FY, Chien CL, Byers JM, Anguelouch A, Xiao G, Gupta A. Determination of the spin polarization of half-metallic CrO(2) by point contact Andreev reflection. PHYSICAL REVIEW LETTERS 2001; 86:5585-5588. [PMID: 11415307 DOI: 10.1103/physrevlett.86.5585] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2000] [Indexed: 05/23/2023]
Abstract
Andreev reflection at a Pb/CrO(2) point contact has been used to determine the spin polarization of single-crystal CrO(2) films made by chemical vapor deposition. The spin polarization is found to be 0.96 +/- 0.01, which confirms that CrO(2) is a half-metallic ferromagnet, as theoretically predicted.
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Yang FY, Cheng CH. Unusual diboration of allenes catalyzed by palladium complexes and organic iodides: a new efficient route to biboronic compounds. J Am Chem Soc 2001; 123:761-2. [PMID: 11456601 DOI: 10.1021/ja005589g] [Citation(s) in RCA: 130] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Yang FY, Chien CL. Spiraling spin structure in an exchange-coupled antiferromagnetic layer. PHYSICAL REVIEW LETTERS 2000; 85:2597-2600. [PMID: 10978116 DOI: 10.1103/physrevlett.85.2597] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2000] [Indexed: 05/23/2023]
Abstract
Using trilayers of permalloy/FeMn/Co with various thicknesses t(AF) of the antiferromagnetic FeMn, we have observed evidence of a spiraling spin structure within FeMn. For t(AF)<90 A, the turn angle straight theta of the spiral varies as straight theta = (1.76 degrees /A)t(AF).
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Yang FY, Liu K, Hong K, Reich DH, Searson PC, Chien CL. Large magnetoresistance of electrodeposited single-crystal bismuth thin films. Science 1999; 284:1335-7. [PMID: 10334983 DOI: 10.1126/science.284.5418.1335] [Citation(s) in RCA: 450] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
Single-crystal bismuth thin films 1 to 20 micrometers thick were fabricated by electrodeposition and suitable annealing. Magnetoresistance up to 250 percent at 300 kelvin and 380,000 percent at 5 kelvin as well as clean Shubnikov-de Haas oscillations were observed, indicative of the high quality of these films. A hybrid structure was also made that showed a large magnetoresistive effect of 30 percent at 200 oersted and a field sensitivity of 0.2 percent magnetoresistance per oersted at room temperature.
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Xu H, Zhang X, Yang FY. Further studies on Zn2+ -mediated domain-domain communication in human erythrocyte band 3. Biosci Rep 1998; 18:265-77. [PMID: 10192283 DOI: 10.1023/a:1020161032473] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Human erythrocyte band 3 is purified and reconstituted into vesicles, forming right-side-out proteoliposomes. Zn2+ entrapped inside the proteoliposomes inhibits the anion transport activity of band 3, and removal of the cytoplasmic domain of band 3 is able to diminish Zn2+ inhibition. Thus, the inhibition of activity of band 3 results from the Zn2+ induced conformational change of the cytoplasmic domain, which in turn is transmitted to the membrane domain. The results of intrinsic fluorescence and its quenching by HB and the 35Cl NMR study indicate that the cytoplasmic domain is essential for the conformational change induced by Zn2+. SH-blocking reagents, CH(3)I and GSSG, are used to modify the cytoplasmic domain, where they specifically bind to Cys201 and Cys317. It is observed that the Zn2+ induced inhibition of anion transport activity is blocked. This demonstrates that Cys201 and Cys317 are required in Zn2+ -mediated domain-domain communication.
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Au LC, Yang FY, Yang WJ, Lo SH, Kao CF. Gene synthesis by a LCR-based approach: high-level production of leptin-L54 using synthetic gene in Escherichia coli. Biochem Biophys Res Commun 1998; 248:200-3. [PMID: 9675111 DOI: 10.1006/bbrc.1998.8929] [Citation(s) in RCA: 57] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Synthetic genes are very useful in genetic and protein engineering. Here we propose a general method for construction of synthetic genes. Short oligonucleotides are joined through ligase chain reaction (LCR) in high stringency conditions to make "unit fragments" which are then fused to form a full-length gene sequence by polymerase chain reaction. The procedure is simple and accurate and does not place constraints on sequence and length. In this report, a recombinant leptin gene was synthesized according to the codon preference of Escherichia coli. Besides, a substitution of the only Met at position 54 for Leu and an addition of a Met at the N-terminus were introduced in the synthetic gene. The gene was cloned in the pQE-31 expression vector and was expressed in E. coli. A large amount of recombinant leptin containing 6 x His tag was produced and purified by Ni-NTA affinity column. Finally, intact leptin-L54 was released after removing the tag by CNBr cleavage at the Met residue.
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Xiao L, Xie WS, Yang FY. A method for uni-directional reconstitution of human erythrocyte glucose transporter. BIOCHEMISTRY AND MOLECULAR BIOLOGY INTERNATIONAL 1998; 44:1217-23. [PMID: 9623777 DOI: 10.1080/15216549800202312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
The glucose transporter of human erythrocytes (Glut1) was reconstituted into soybean phospholipid liposomes by a method of direct incorporation using the nonionic detergent n-octyl beta-D-glucopyranoside. The reconstituted proteoliposomes were proved to be intact and low ionic permeability. Freeze-fracture electron microscopy study showed that the diameter of the proteoliposomes was about 150 +/- 50 nm and the protein was randomly distributed. The kinetic parameters of the reconstituted transporter were: Km =16.23 mmol/L, Vmax = 34.48 nmol/sec x mg protein. Furthermore, about 90% of the glucose transporter in the reconstituted proteoliposomes were orientated inside-out. Until now it is a more efficient method for uni-directional reconstitution of Glut1 with good reproducibility and higher transport activity.
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Yang ZW, Yang FY. Sensitivity of Ca2+ transport of mitochondria to reactive oxygen species. Biosci Rep 1997; 17:557-67. [PMID: 9561301 DOI: 10.1023/a:1027316424985] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
The relationship between Ca2+ transport and energy transduction of myocardial mitochondria in the presence of reactive oxygen species was investigated. Following treatment with oxygen free radicals [superoxide(O2.-) or hydroxyl radical (.OH)], lipid free radicals in myocardial mitochondrial membrane could be detected by using the method of EPR spin trap. Simultaneously there were obvious alterations in the free Ca2+ ([Ca2+]m) in the mitochondrial matrix; the physical state of membrane lipid; the efficiency of oxidative phosphorylation (ADP/O); the value of the respiratory control ratio (RCR); and the membrane potential of the inner membrane of myocardial mitochondria. If the concentrations of reactive oxygen species were reduced by about 30%, the alterations in the physical state of the membrane lipid and energy transduction of myocardial mitochondria were not observed, but the changes in Ca2+ homeostasis remained. We conclude that Ca2+ transport by myocardial mitochondria is more sensitive to agents such as O2.- or OH, etc. than are oxidation phosphorylation and the respiratory chain.
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Yang FY, Wang LH, Yang XY, Tsui ZC, Tu YP. The role of ganglioside GM3 in the modulation of conformation and activity of sarcoplasmic reticulum Ca(2+)-ATPase. Biophys Chem 1997; 68:137-46. [PMID: 9468616 DOI: 10.1016/s0301-4622(97)00025-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Rabbit sarcoplasmic reticulum does contain trace amounts of gangliosides, and the main species is GM3. Incorporation of GM3 into the SR vesicles or addition of it to the soybean phospholipid used for reconstitution of proteoliposomes obviously increased ATP hydrolysis, as well as, Ca2+ uptake activity of sarcoplasmic reticulum Ca(2+)-ATPase. Conformation changes of Ca(2+)-ATPase induced by GM3 were also observed by circular dichroism, intrinsic fluorescence and fluorescence quenching measurements.
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