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Naito T, Ozawa Y, Tomoyasu M, Inagaki M, Fukue M, Sakai M, Yamamoto T, Ishikawa S, Onizuka M. Reply. Acta Physiol (Oxf) 2007. [DOI: 10.1111/j.1748-1716.2006.01647_2.x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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102
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Aoki N, Sakai M, Nakayama T, Fukuhara S, Ohta S, Kikuchi N, Oishi M, Kiuchi T, Nozaki K, Hashimoto N. u-SHARE: web-based decision support/risk communication tool for healthcare consumers with unruptured intracranial aneurysms. Stud Health Technol Inform 2007; 129:1012-6. [PMID: 17911868] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
PURPOSE Clinical management for unruptured intracranial aneurysms (UIA) is controversial and requires professional knowledge which is the main reason that patients have difficulty in making decisions. The purpose of this study is to develop a tool that aids healthcare consumers in making optimal shared decisions with decision analysis. METHODS The decision model and relevant data were derived from published literature. A web-based decision analytic tool was designed to provide a systematic guide for patients to understand favorable treatment options, intrinsic uncertainty, and critical factors for decision making. Twenty-nine testers evaluated content appropriateness, usability and clinical usefulness of the tool. RESULTS The decision analytic tool has been successfully implemented and evaluated. Testers generally judged the web-based decision analytic tool as functional and useful. Acceptance rate for decision analysis was higher in nonhealthcare professionals than health care professionals. CONCLUSIONS Our decision analytic tool was well accepted especially by healthcare consumers. The tool enables UIA patients to enhance their knowledge and understanding toward optimal shared decision making and can be an alternative "structured informed consent tool".
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Naito T, Ozawa Y, Tomoyasu M, Inagaki M, Fukue M, Sakai M, Yamamoto T, Ishikawa S, Onizuka M. New method for evaluation of lung lymph flow rate with intact lymphatics in anaesthetized sheep. Acta Physiol (Oxf) 2006; 188:139-49. [PMID: 16948801 DOI: 10.1111/j.1748-1716.2006.01608.x] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
AIM Lung lymph has commonly been studied using a lymph fistula created by tube cannulation into the efferent duct of the caudal mediastinal node in sheep. In this method, the tail region of the caudal mediastinal node is resected and the diaphragm is cauterized to exclude systemic lymph contamination, and cannulation is performed into one of the multiple efferent ducts originating from the caudal mediastinal node. Moreover, the pumping activity of lymphatics might be diminished by cannulation. Therefore, the purpose of the study was to evaluate the flow rate of lung lymph with maintenance of intact lymphatic networks around the caudal mediastinal node to the thoracic duct in sheep. METHODS An ultrasound transit-time flow meter was used to measure lung lymph flow. The thoracic duct was clamped just above the diaphragm and the flow probe was attached to the thoracic duct just after the last junction with an efferent duct from the caudal mediastinal node. The lung lymph flow rate was measured at baseline and under conditions of lung-oedema formation. RESULTS The baseline lung lymph flow rate in our model was three- to sixfold greater than values obtained with the cannulation method. With oedema-formation, the lung lymph flow rate was the same as that measured using cannulation. CONCLUSION The lung lymph flow was unexpectedly large under the conditions of the study, and our data suggest that the drainage effect of lymphatics is significant as a safety factor against pulmonary oedema formation.
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Itano T, Kawakami H, Kono T, Sakai M. Experimental induction of nocardiosis in yellowtail, Seriola quinqueradiata Temminck and Schlegel by artificial challenge. JOURNAL OF FISH DISEASES 2006; 29:529-34. [PMID: 16948702 DOI: 10.1111/j.1365-2761.2006.00748.x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
Challenge methods for inducing nocardiosis, caused by Nocardia seriolae in yellowtail, Seriola quinqueradiata, were evaluated. The first method involved intraperitoneal injection of 1.1 x 10(2), x 10(3) and x 10(4) cfu of N. seriolae; the second was by bath immersion with three different concentrations of bacterial suspension for 10 min; the third was by intradermal injection using a multipuncture device; the fourth was by oral administration using a tube; the fifth was based on the co-habitation of uninfected fish with others that had been artificially infected, i.e. intraperitoneally or by immersion for 10 min. The LD(50) values for the infection trials were 1.9 x 10(2) (intraperitoneal injection), 1.5 x 10(4) mL(-1) (immersion), 4.3 x 10(6) (intradermal injection) and 1.7 x 10(7) (oral administration). In the co-habitation challenge, mortalities were 70% and 50% in groups of non-infected fish mixed with fish infected by the i.p. injection and immersion methods, respectively. Fish challenged by intraperitoneal injection developed adhesions. Fish challenged by other methods did not show any gross clinical signs and moribund fish were similar to natural infection.
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Adler SS, Afanasiev S, Aidala C, Ajitanand NN, Akiba Y, Alexander J, Amirikas R, Aphecetche L, Aronson SH, Averbeck R, Awes TC, Azmoun R, Babintsev V, Baldisseri A, Barish KN, Barnes PD, Bassalleck B, Bathe S, Batsouli S, Baublis V, Bazilevsky A, Belikov S, Berdnikov Y, Bhagavatula S, Boissevain JG, Borel H, Borenstein S, Brooks ML, Brown DS, Bruner N, Bucher D, Buesching H, Bumazhnov V, Bunce G, Burward-Hoy JM, Butsyk S, Camard X, Chai JS, Chand P, Chang WC, Chernichenko S, Chi CY, Chiba J, Chiu M, Choi IJ, Choi J, Choudhury RK, Chujo T, Cianciolo V, Cobigo Y, Cole BA, Constantin P, d'Enterria D, David G, Delagrange H, Denisov A, Deshpande A, Desmond EJ, Devismes A, Dietzsch O, Drapier O, Drees A, du Rietz R, Durum A, Dutta D, Efremenko YV, El Chenawi K, Enokizono A, En'yo H, Esumi S, Ewell L, Fields DE, Fleuret F, Fokin SL, Fox BD, Fraenkel Z, Frantz JE, Franz A, Frawley AD, Fung SY, Garpman S, Ghosh TK, Glenn A, Gogiberidze G, Gonin M, Gosset J, Goto Y, Granier de Cassagnac R, Grau N, Greene SV, Grosse Perdekamp M, Guryn W, Gustafsson HA, Hachiya T, Haggerty JS, Hamagaki H, Hansen AG, Hartouni EP, Harvey M, Hayano R, Hayashi N, He X, Heffner M, Hemmick TK, Heuser JM, Hibino M, Hill JC, Holzmann W, Homma K, Hong B, Hoover A, Ichihara T, Ikonnikov VV, Imai K, Isenhower D, Ishihara M, Issah M, Isupov A, Jacak BV, Jang WY, Jeong Y, Jia J, Jinnouchi O, Johnson BM, Johnson SC, Joo KS, Jouan D, Kametani S, Kamihara N, Kang JH, Kapoor SS, Katou K, Kelly S, Khachaturov B, Khanzadeev A, Kikuchi J, Kim DH, Kim DJ, Kim DW, Kim E, Kim GB, Kim HJ, Kistenev E, Kiyomichi A, Kiyoyama K, Klein-Boesing C, Kobayashi H, Kochenda L, Kochetkov V, Koehler D, Kohama T, Kopytine M, Kotchetkov D, Kozlov A, Kroon PJ, Kuberg CH, Kurita K, Kuroki Y, Kweon MJ, Kwon Y, Kyle GS, Lacey R, Ladygin V, Lajoie JG, Lebedev A, Leckey S, Lee DM, Lee S, Leitch MJ, Li XH, Lim H, Litvinenko A, Liu MX, Liu Y, Maguire CF, Makdisi YI, Malakhov A, Manko VI, Mao Y, Martinez G, Marx MD, Masui H, Matathias F, Matsumoto T, McGaughey PL, Melnikov E, Messer F, Miake Y, Milan J, Miller TE, Milov A, Mioduszewski S, Mischke RE, Mishra GC, Mitchell JT, Mohanty AK, Morrison DP, Moss JM, Mühlbacher F, Mukhopadhyay D, Muniruzzaman M, Murata J, Nagamiya S, Nagle JL, Nakamura T, Nandi BK, Nara M, Newby J, Nilsson P, Nyanin AS, Nystrand J, O'Brien E, Ogilvie CA, Ohnishi H, Ojha ID, Okada K, Ono M, Onuchin V, Oskarsson A, Otterlund I, Oyama K, Ozawa K, Pal D, Palounek APT, Pantuev V, Papavassiliou V, Park J, Parmar A, Pate SF, Peitzmann T, Peng JC, Peresedov V, Pinkenburg C, Pisani RP, Plasil F, Purschke ML, Purwar AK, Rak J, Ravinovich I, Read KF, Reuter M, Reygers K, Riabov V, Riabov Y, Roche G, Romana A, Rosati M, Rosnet P, Ryu SS, Sadler ME, Saito N, Sakaguchi T, Sakai M, Sakai S, Samsonov V, Sanfratello L, Santo R, Sato HD, Sato S, Sawada S, Schutz Y, Semenov V, Seto R, Shaw MR, Shea TK, Shibata TA, Shigaki K, Shiina T, Silva CL, Silvermyr D, Sim KS, Singh CP, Singh V, Sivertz M, Soldatov A, Soltz RA, Sondheim WE, Sorensen SP, Sourikova IV, Staley F, Stankus PW, Stenlund E, Stepanov M, Ster A, Stoll SP, Sugitate T, Sullivan JP, Takagui EM, Taketani A, Tamai M, Tanaka KH, Tanaka Y, Tanida K, Tannenbaum MJ, Tarján P, Tepe JD, Thomas TL, Tojo J, Torii H, Towell RS, Tserruya I, Tsuruoka H, Tuli SK, Tydesjö H, Tyurin N, van Hecke HW, Velkovska J, Velkovsky M, Veszprémi V, Villatte L, Vinogradov AA, Volkov MA, Vznuzdaev E, Wang XR, Watanabe Y, White SN, Wohn FK, Woody CL, Xie W, Yang Y, Yanovich A, Yokkaichi S, Young GR, Yushmanov IE, Zajc WA, Zhang C, Zhou S, Zhou SJ, Zolin L. Dense-medium modifications to jet-induced hadron pair distributions in Au+Au collisions at sqrt s NN=200 GeV. PHYSICAL REVIEW LETTERS 2006; 97:052301. [PMID: 17026095 DOI: 10.1103/physrevlett.97.052301] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2005] [Indexed: 05/12/2023]
Abstract
Azimuthal correlations of jet-induced high-p(T) charged hadron pairs are studied at midrapidity in Au+Au collisions at sqrt[s(NN)]=200 GeV. The distribution of jet-associated partner hadrons (1.0<p(T)<2.5 GeV/c) per trigger hadron (2.5<p(T)<4.0 GeV/c) is found to vary with collision centrality, in both shape and yield, indicating a significant effect of the nuclear collision medium on the jet fragmentation process.
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Shirota S, Yoshida T, Sakai M, Kim JI, Sugiura H, Oishi T, Nitta K, Tsuchiya K. Correlation between the expression level of c-maf and glutathione peroxidase-3 in c-maf -/- mice kidney and c-maf overexpressed renal tubular cells. Biochem Biophys Res Commun 2006; 348:501-6. [PMID: 16890189 DOI: 10.1016/j.bbrc.2006.07.111] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2006] [Accepted: 07/18/2006] [Indexed: 12/13/2022]
Abstract
Large mafs are transcriptional factors and members of the basic leucine zipper (b-Zip) superfamily. Since we previously identified expression of c-maf in mouse kidney, we presently investigated the mRNA expression profile in the kidney of c-maf gene knockout mice by using DNA microarray, and plasma glutathione peroxidase-3 (GPx3) was predominantly downregulated. We focused on the relation between the expression level of c-maf and GPx3 in vivo and in vitro. Since GPx3 is an antioxidant enzyme, oxidative stress was induced by exposing a culture cell derived from mouse renal tubules (mIMCD3) to hydrogen peroxide. Real-time PCR demonstrated that mRNA expression of both c-maf and GPx3 increased in parallel during exposure to oxidative stress in a time- and dose-dependent manner. Then, the mIMCD3 cells were transfected with c-maf-cDNA containing plasmid, which resulted in an increase in mRNA and protein expression of GPx3 compared with the control cells. Thus, c-maf may be transcriptional regulator of GPx3 expression and modulate the antioxidative pathway in the kidney.
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Tsurumi Y, Tamura K, Tanaka Y, Koide Y, Sakai M, Yabana M, Noda Y, Hashimoto T, Kihara M, Hirawa N, Toya Y, Kiuchi Y, Iwai M, Horiuchi M, Umemura S. Interacting molecule of AT1 receptor, ATRAP, is colocalized with AT1 receptor in the mouse renal tubules. Kidney Int 2006; 69:488-94. [PMID: 16514431 DOI: 10.1038/sj.ki.5000130] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
The renin-angiotensin system in the kidney plays a critical role in the regulation of renal hemodynamics and sodium handling through the activation of vascular, glomerular and tubular angiotensin II type 1 (AT1) receptor-mediated signaling. We previously cloned a molecule that specifically bound to the AT1 receptor and modulated AT1 receptor signaling in vitro, which we named ATRAP (for AT1 receptor-associated protein). The purpose of this study is to analyze the renal distribution of ATRAP and to examine whether ATRAP is co-expressed with the AT1 receptor in the mouse kidney. We performed in situ hybridization, Western blot analysis, and immunohistochemistry to investigate the expression of ATRAP mRNA and protein in the mouse kidney. The results of Western blot analysis revealed the ATRAP protein to be abundantly expressed in the kidney. Employing in situ hybridization and immunohistochemistry, we found that both ATRAP mRNA and the protein were widely distributed along the renal tubules from Bowman's capsules to the inner medullary collecting ducts. ATRAP mRNA was also detected in the glomeruli, vasculature, and interstitial cells. In all tubular cells, the ATRAP protein colocalized with the AT1 receptor. Finally, we found that the dietary salt depletion significantly decreased the renal expression of ATRAP as well as AT1 receptor. These findings show ATRAP to be abundantly and broadly distributed in nephron segments where the AT1 receptor is expressed. Furthermore, this is the first report demonstrating a substantial colocalization of ATRAP and AT1 receptor in vivo.
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MESH Headings
- Adaptor Proteins, Signal Transducing/analysis
- Adaptor Proteins, Signal Transducing/genetics
- Adaptor Proteins, Signal Transducing/physiology
- Animals
- Blotting, Western
- Diet, Sodium-Restricted
- Gene Expression Regulation/drug effects
- Immunohistochemistry
- In Situ Hybridization
- Kidney Glomerulus/chemistry
- Kidney Glomerulus/physiology
- Kidney Tubules/chemistry
- Kidney Tubules/physiology
- Male
- Mice
- Mice, Inbred C57BL
- RNA, Messenger/analysis
- RNA, Messenger/genetics
- Receptor, Angiotensin, Type 1/analysis
- Receptor, Angiotensin, Type 1/genetics
- Receptor, Angiotensin, Type 1/physiology
- Renin-Angiotensin System/physiology
- Signal Transduction
- Sodium/pharmacology
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Konishi Y, Aihara Y, Sakai M, Ogawa G, Fukubayashi T. Gamma loop dysfunction in the quadriceps femoris of patients who underwent anterior cruciate ligament reconstruction remains bilaterally. Scand J Med Sci Sports 2006; 17:393-9. [PMID: 16805784 DOI: 10.1111/j.1600-0838.2006.00573.x] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Purpose of this study was to investigate the effects of anterior cruciate ligament (ACL) repair on the gamma loop of the bilateral quadriceps femoris (QF). Maximal voluntary contraction (MVC) of knee extension and integrated electromyogram (I-EMG) of vastus medialis (VM), vastus lateralis (VL), and rectus femoris (RF) were examined in uninjured and injured limbs of 18 patients and 10 normal subjects, before and after 20-min vibration applied to the QF. Mean percentage changes were calculated as: (pre-vibration value-post-vibration value)/pre-vibration value x 100. Patients were divided into two groups: short-term-group (tested </=12 months after ACL repair, n=8), long-term-group (tested >/=18 months after ACL repair, n=10). Mean percentage changes of the four groups were compared with those of controls. Results indicated that changes of MVC and I-EMG on the uninjured and injured sides in short-term-group in response to vibration were significantly different from those of controls. There were no significant differences between uninjured sides in long-term and control groups. MVC and I-EMG of VM and RF of injured side in patients in the long-term-group in response to vibration were not different from those of controls. From these results, we concluded that this abnormality of the gamma loop in both injured and uninjured sides did not recover despite ACL reconstruction. However, the abnormality in uninjured side might recover >/=18 months after repair.
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Itano T, Kawakami H, Kono T, Sakai M. Detection of fish nocardiosis by loop-mediated isothermal amplification. J Appl Microbiol 2006; 100:1381-7. [PMID: 16696687 DOI: 10.1111/j.1365-2672.2006.02872.x] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
AIMS Loop-mediated isothermal amplification (LAMP) is a novel method that amplifies DNA with high specificity and rapidity under isothermal conditions. In this study, using the LAMP method, a protocol for detecting Nocardia seriolae which is a causative agent of fish nocardiosis, was designed. METHODS AND RESULTS A set of four primers, two inner and two outer, were designed based on the sequence of the 16S-23S ribosomal RNA internal transcribed spacer region of N. seriolae. Time and temperature conditions for detection of N. seriolae were optimized for 60 min at 65 degrees C. Other fish pathogen was not amplified by this LAMP system. The detection of N. seriola using LAMP was found to be more sensitive than that by polymerase chain reaction. CONCLUSIONS LAMP is a highly sensitive and rapid diagnostic procedure for detection of N. seriolae. SIGNIFICANCE AND IMPACT OF THE STUDY LAMP is a useful diagnostic method for fish nocardiosis.
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110
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Adler SS, Afanasiev S, Aidala C, Ajitanand NN, Akiba Y, Alexander J, Amirikas R, Aphecetche L, Aronson SH, Averbeck R, Awes TC, Azmoun R, Babintsev V, Baldisseri A, Barish KN, Barnes PD, Bassalleck B, Bathe S, Batsouli S, Baublis V, Bazilevsky A, Belikov S, Berdnikov Y, Bhagavatula S, Boissevain JG, Borel H, Borenstein S, Brooks ML, Brown DS, Bruner N, Bucher D, Buesching H, Bumazhnov V, Bunce G, Burward-Hoy JM, Butsyk S, Camard X, Chai JS, Chand P, Chang WC, Chernichenko S, Chi CY, Chiba J, Chiu M, Choi IJ, Choi J, Choudhury RK, Chujo T, Cianciolo V, Cobigo Y, Cole BA, Constantin P, d'Enterria D, David G, Delagrange H, Denisov A, Deshpande A, Desmond EJ, Devismes A, Dietzsch O, Drapier O, Drees A, du Rietz R, Durum A, Dutta D, Efremenko YV, Chenawi KE, Enokizono A, En'yo H, Esumi S, Ewell L, Fields DE, Fleuret F, Fokin SL, Fox BD, Fraenkel Z, Frantz JE, Franz A, Frawley AD, Fung SY, Garpman S, Ghosh TK, Glenn A, Gogiberidze G, Gonin M, Gosset J, Goto Y, de Cassagnac RG, Grau N, Greene SV, Perdekamp MG, Guryn W, Gustafsson HA, Hachiya T, Haggerty JS, Hamagaki H, Hansen AG, Hartouni EP, Harvey M, Hayano R, Hayashi N, He X, Heffner M, Hemmick TK, Heuser JM, Hibino M, Hiejima H, Hill JC, Holzmann W, Homma K, Hong B, Hoover A, Ichihara T, Ikonnikov VV, Imai K, Isenhower D, Ishihara M, Issah M, Isupov A, Jacak BV, Jang WY, Jeong Y, Jia J, Jinnouchi O, Johnson BM, Johnson SC, Joo KS, Jouan D, Kametani S, Kamihara N, Kang JH, Kapoor SS, Katou K, Kelly S, Khachaturov B, Khanzadeev A, Kikuchi J, Kim DH, Kim DJ, Kim DW, Kim E, Kim GB, Kim HJ, Kistenev E, Kiyomichi A, Kiyoyama K, Klein-Boesing C, Kobayashi H, Kochenda L, Kochetkov V, Koehler D, Kohama T, Kopytine M, Kotchetkov D, Kozlov A, Kroon PJ, Kuberg CH, Kurita K, Kuroki Y, Kweon MJ, Kwon Y, Kyle GS, Lacey R, Ladygin V, Lajoie JG, Lebedev A, Leckey S, Lee DM, Lee S, Leitch MJ, Li XH, Lim H, Litvinenko A, Liu MX, Liu Y, Maguire CF, Makdisi YI, Malakhov A, Manko VI, Mao Y, Martinez G, Marx MD, Masui H, Matathias F, Matsumoto T, McGaughey PL, Melnikov E, Messer F, Miake Y, Milan J, Miller TE, Milov A, Mioduszewski S, Mischke RE, Mishra GC, Mitchell JT, Mohanty AK, Morrison DP, Moss JM, Mühlbacher F, Mukhopadhyay D, Muniruzzaman M, Murata J, Nagamiya S, Nagle JL, Nakamura T, Nandi BK, Nara M, Newby J, Nilsson P, Nyanin AS, Nystrand J, O'Brien E, Ogilvie CA, Ohnishi H, Ojha ID, Okada K, Ono M, Onuchin V, Oskarsson A, Otterlund I, Oyama K, Ozawa K, Pal D, Palounek APT, Pantuev V, Papavassiliou V, Park J, Parmar A, Pate SF, Peitzmann T, Peng JC, Peresedov V, Pinkenburg C, Pisani RP, Plasil F, Purschke ML, Purwar AK, Rak J, Ravinovich I, Read KF, Reuter M, Reygers K, Riabov V, Riabov Y, Roche G, Romana A, Rosati M, Rosnet P, Ryu SS, Sadler ME, Sahlmueller B, Saito N, Sakaguchi T, Sakai M, Sakai S, Samsonov V, Sanfratello L, Santo R, Sato HD, Sato S, Sawada S, Schutz Y, Semenov V, Seto R, Shaw MR, Shea TK, Shibata TA, Shigaki K, Shiina T, Silva CL, Silvermyr D, Sim KS, Singh CP, Singh V, Sivertz M, Soldatov A, Soltz RA, Sondheim WE, Sorensen SP, Sourikova IV, Staley F, Stankus PW, Stenlund E, Stepanov M, Ster A, Stoll SP, Sugitate T, Sullivan JP, Takagui EM, Taketani A, Tamai M, Tanaka KH, Tanaka Y, Tanida K, Tannenbaum MJ, Tarján P, Tepe JD, Thomas TL, Tojo J, Torii H, Towell RS, Tserruya I, Tsuruoka H, Tuli SK, Tydesjö H, Tyurin N, van Hecke HW, Velkovska J, Velkovsky M, Veszprémi V, Villatte L, Vinogradov AA, Volkov MA, Vznuzdaev E, Wang XR, Watanabe Y, White SN, Wohn FK, Woody CL, Xie W, Yang Y, Yanovich A, Yokkaichi S, Young GR, Yushmanov IE, Zajc WA, Zhang C, Zhou S, Zhou SJ, Zolin L. Common suppression pattern of eta and pi0 mesons at high transverse momentum in Au + Au collisions at square root S(NN) = 200 GeV. PHYSICAL REVIEW LETTERS 2006; 96:202301. [PMID: 16803168 DOI: 10.1103/physrevlett.96.202301] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2006] [Indexed: 05/10/2023]
Abstract
Inclusive transverse momentum spectra of eta mesons have been measured within p(T) = 2-10 GeV/c at midrapidity by the PHENIX experiment in Au + Au collisions at square root S(NN) = 200 GeV. In central Au+Au the eta yields are significantly suppressed compared to peripheral Au + Au, d + Au, and p + p yields scaled by the corresponding number of nucleon-nucleon collisions. The magnitude, centrality, and p(T) dependence of the suppression is common, within errors, for eta and pi0. The ratio of eta to pi0 spectra at high p(T) amounts to 0.40 < R(eta/pi)0 < 0.48 for the three systems, in agreement with the world average measured in hadronic and nuclear reactions and, at large scaled momentum, in e+e- collisions.
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Fujii N, Shimmyo Y, Sakai M, Sadakane Y, Nakamura T, Morimoto Y, Kinouchi T, Goto Y, Lampi K. Age-related changes of alpha-crystallin aggregate in human lens. Amino Acids 2006; 32:87-94. [PMID: 16699822 DOI: 10.1007/s00726-006-0303-4] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2005] [Accepted: 02/16/2006] [Indexed: 11/25/2022]
Abstract
Lens alpha-crystallin, composed of two subunits alpha A- and alpha B-crystallin, forms large aggregates in the lens of the eye. The present study investigated the aggregate of human lens alpha-crystallin from elderly and young donors. Recombinant alpha A- and alpha B-crystallins in molar ratios of alpha A to alpha B at 1:1, corresponding to the aged sample, were also studied in detail. We found by ultra-centrifugation analysis that the alpha-crystallin aggregate from elderly donors was large and heterogeneous with an average sedimentation coefficient of 30 S and a range of 20-60 S at 37 degrees C. This was higher compared to the young samples that had an average sedimentation coefficient of 17 S. The sedimentation coefficients of recombinant alpha A- and alpha B-crystallins were approximately 12 S and 15 S, respectively. Even when recombinant alpha-crystallins were mixed in molar ratios equivalent to those found in vivo, similar S values as the native aged alpha-crystallin aggregates were not obtained. Changes in the self-association of alpha-crystallin aggregate were correlated to changes in chaperone activity. Alpha-crystallin from young donors, and recombinant alpha A- and alpha B-crystallin and their mixtures showed chaperone activity, which was markedly lost in samples from the aged alpha-crystallin aggregates.
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Sakai M, Shimokawa T, Kobayashi T, Matsushima S, Yamada Y, Nakamura Y, Furukawa Y. Elevated expression of C10orf3 (chromosome 10 open reading frame 3) is involved in the growth of human colon tumor. Oncogene 2006; 25:480-6. [PMID: 16170351 DOI: 10.1038/sj.onc.1209051] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
After analysing gene-expression profiles of colon cancers on a cDNA microarray containing cDNAs corresponding to 23 040 human genes, we focused on a gene annotated as C10orf3 (chromosome 10 open reading frame 3), whose expression was elevated in colorectal cancers (CRC) as well as in tumors arising in the stomach, lung, pancreas, and breast. The gene encodes a putative 464-amino-acid protein containing a domain known as AAA (ATPases associated with a variety of cellular activities). Western blot analysis using an antibody to the gene product confirmed that the protein was overexpressed in nine of the 15 clinical cancer tissues examined, compared to corresponding noncancerous epithelial cells. A subsequent proteomics analysis revealed that C10orf3 product associated with the product of tumor susceptibility gene 101 (TSG101), and that C10orf3 downregulated TSG101 in a post-transcriptional manner. Expression of short interfering RNA in cells derived from CRC caused significant decreases in C10orf3 expression and inhibited growth of the transfected cells, which was associated with increased apoptotic cells. These data suggest that elevated C10orf3 expression might play an essential role in the growth of cancer cells, and that suppression of C10orf3-mediated signal transduction may be a novel therapeutic strategy to a wide range of human tumors.
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Sakai M, Fonseca ESM, Dagli MLZ, Palermo-Neto J. Diazepam effects on Ehrlich tumor growth and macrophage activity in mice. Life Sci 2006; 78:1777-83. [PMID: 16257421 DOI: 10.1016/j.lfs.2005.08.015] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2005] [Accepted: 08/11/2005] [Indexed: 11/23/2022]
Abstract
Besides the central gabaergic receptors described for benzodiazepines, peripheral type binding sites (PBR) were also identified for these molecules in endocrine steroidogenic tissues, immune organs and cells, such as macrophages and lymphocytes. PBR activation was reported to decrease innate immunity and host defense. The present experiment was designed to analyze the effects of diazepam on Ehrlich tumor growth, and on macrophage activity of Ehrlich tumor bearing mice. Results showed that diazepam (3.0 mg/kg/day, for 7 days) increased the number of Ehrlich tumor cells and the volume of tumor-induced ascitic fluid. These effects were not observed after smaller doses of diazepam, suggesting a dose-dependant effect. Furthermore, our results show that 3.0 mg/kg of diazepam, administered daily, for 2 days, decreased (1) the number of peritoneal leukocytes retrieved after injection of the Ehrlich tumor, (2) the percents of macrophage spreading, and (3) the levels of macrophage NO production. Diazepam (3.0 mg/kg/day for 2 days) had no effect on macrophage phagocytosis or on H2O2 production. The present data is discussed based on a direct and/or indirect action of diazepam. Particularly, our findings might be due to a direct effect of diazepam on PBRs present on macrophages and tumor cells, or could still be mediated by PBR stimulation within the hypothalamus-pituitary-adrenal (HPA) axis.
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Linghu H, Tsuda M, Makino Y, Sakai M, Watanabe T, Ichihara S, Sawa H, Nagashima K, Mochizuki N, Tanaka S. Involvement of adaptor protein Crk in malignant feature of human ovarian cancer cell line MCAS. Oncogene 2006; 25:3547-56. [PMID: 16491127 DOI: 10.1038/sj.onc.1209398] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Signaling adaptor protein Crk regulates cell motility and growth through its targets Dock180 and C3G, those are the guanine-nucleotide exchange factors (GEFs) for small GTPases Rac and Rap, respectively. Recently, overexpression of Crk has been reported in various human cancers. To define the role for Crk in human cancer cells, Crk expression was targeted in the human ovarian cancer cell line MCAS through RNA interference, resulting in the establishment of three Crk knockdown cell lines. These cell lines exhibited disorganized actin fibers, reduced number of focal adhesions, and abolishment of lamellipodia formation. Decreased Rac activity was demonstrated by pull-down assay and FRET-based time-lapse microscopy, in association with suppression of both motility and invasion by phagokinetic track assay and transwell assay in these cells. Furthermore, Crk knockdown cells exhibited slow growth rates in culture and suppressed anchorage-dependent growth in soft agar. Tumor forming potential in nude mice was attenuated, and intraperitoneal dissemination was not observed when Crk knockdown cells were injected into the peritoneal cavity. These results suggest that the Crk is a key component of focal adhesion and involved in cell growth, invasion, and dissemination of human ovarian cancer cell line MCAS.
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Kumashiro M, Tsuji Y, Sakai M. Genitalic autogrooming: a self-filling trash collection system in crickets. Naturwissenschaften 2006; 93:92-6. [PMID: 16465501 DOI: 10.1007/s00114-005-0068-8] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2005] [Accepted: 10/27/2005] [Indexed: 11/28/2022]
Abstract
Insects groom almost all parts of the body surface with their legs and mouth parts. However, some body regions are difficult to reach and keep clean. One is the genital chamber located in the last abdominal segment in males which houses the phallic complex for copulation and production of the spermatophore. In the male cricket, foreign substances can enter the genital chamber when it is opened during copulation and spermatophore formation. Moreover, the dorsal pouch and ventral lobes of the phallic complex, which mould the attachment plate, tube, and ampulla of the spermatophore, are inevitably soiled as a result of spermatophore production. We found a unique cleaning system in which foreign substances accumulated during copulation and spermatophore debris left in the dorsal pouch after copulation are quickly removed and collected in special pockets in the genital chamber. This trash is collected by undulation of the genital chamber's membranous floor which is entirely covered by small scales ( approximately 10 microm) similar to those in the ovipositor of female crickets. This self-filling trash collecting system may be used in some other insects which produce the spermatophore in a similar manner to that of crickets.
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Adler SS, Afanasiev S, Aidala C, Ajitanand NN, Akiba Y, Alexander J, Amirikas R, Aphecetche L, Aronson SH, Averbeck R, Awes TC, Azmoun R, Babintsev V, Baldisseri A, Barish KN, Barnes PD, Bassalleck B, Bathe S, Batsouli S, Baublis V, Bazilevsky A, Belikov S, Berdnikov Y, Bhagavatula S, Boissevain JG, Borel H, Borenstein S, Brooks ML, Brown DS, Bruner N, Bucher D, Buesching H, Bumazhnov V, Bunce G, Burward-Hoy JM, Butsyk S, Camard X, Chai JS, Chand P, Chang WC, Chernichenko S, Chi CY, Chiba J, Chiu M, Choi IJ, Choi J, Choudhury RK, Chujo T, Cianciolo V, Cobigo Y, Cole BA, Constantin P, d'Enterria D, David G, Delagrange H, Denisov A, Deshpande A, Desmond EJ, Devismes A, Dietzsch O, Drapier O, Drees A, du Rietz R, Durum A, Dutta D, Efremenko YV, El Chenawi K, Enokizono A, En'yo H, Esumi S, Ewell L, Fields DE, Fleuret F, Fokin SL, Fox BD, Fraenkel Z, Frantz JE, Franz A, Frawley AD, Fung SY, Garpman S, Ghosh TK, Glenn A, Gogiberidze G, Gonin M, Gosset J, Goto Y, de Cassagnac RG, Grau N, Greene SV, Perdekamp MG, Guryn W, Gustafsson HA, Hachiya T, Haggerty JS, Hamagaki H, Hansen AG, Hartouni EP, Harvey M, Hayano R, Hayashi N, He X, Heffner M, Hemmick TK, Heuser JM, Hibino M, Hill JC, Holzmann W, Homma K, Hong B, Hoover A, Ichihara T, Ikonnikov VV, Imai K, Isenhower D, Ishihara M, Issah M, Isupov A, Jacak BV, Jang WY, Jeong Y, Jia J, Jinnouchi O, Johnson BM, Johnson SC, Joo KS, Jouan D, Kametani S, Kamihara N, Kang JH, Kapoor SS, Katou K, Kelly S, Khachaturov B, Khanzadeev A, Kikuchi J, Kim DH, Kim DJ, Kim DW, Kim E, Kim GB, Kim HJ, Kistenev E, Kiyomichi A, Kiyoyama K, Klein-Boesing C, Kobayashi H, Kochenda L, Kochetkov V, Koehler D, Kohama T, Kopytine M, Kotchetkov D, Kozlov A, Kroon PJ, Kuberg CH, Kurita K, Kuroki Y, Kweon MJ, Kwon Y, Kyle GS, Lacey R, Ladygin V, Lajoie JG, Lebedev A, Leckey S, Lee DM, Lee S, Leitch MJ, Li XH, Lim H, Litvinenko A, Liu MX, Liu Y, Maguire CF, Makdisi YI, Malakhov A, Manko VI, Mao Y, Martinez G, Marx MD, Masui H, Matathias F, Matsumoto T, McGaughey PL, Melnikov E, Messer F, Miake Y, Milan J, Miller TE, Milov A, Mioduszewski S, Mischke RE, Mishra GC, Mitchell JT, Mohanty AK, Morrison DP, Moss JM, Mühlbacher F, Mukhopadhyay D, Muniruzzaman M, Murata J, Nagamiya S, Nagle JL, Nakamura T, Nandi BK, Nara M, Newby J, Nilsson P, Nyanin AS, Nystrand J, O'Brien E, Ogilvie CA, Ohnishi H, Ojha ID, Okada K, Ono M, Onuchin V, Oskarsson A, Otterlund I, Oyama K, Ozawa K, Pal D, Palounek APT, Pantuev V, Papavassiliou V, Park J, Parmar A, Pate SF, Peitzmann T, Peng JC, Peresedov V, Pinkenburg C, Pisani RP, Plasil F, Purschke ML, Purwar AK, Rak J, Ravinovich I, Read KF, Reuter M, Reygers K, Riabov V, Riabov Y, Roche G, Romana A, Rosati M, Rosnet P, Ryu SS, Sadler ME, Saito N, Sakaguchi T, Sakai M, Sakai S, Samsonov V, Sanfratello L, Santo R, Sato HD, Sato S, Sawada S, Schutz Y, Semenov V, Seto R, Shaw MR, Shea TK, Shibata TA, Shigaki K, Shiina T, Silva CL, Silvermyr D, Sim KS, Singh CP, Singh V, Sivertz M, Soldatov A, Soltz RA, Sondheim WE, Sorensen SP, Sourikova IV, Staley F, Stankus PW, Stenlund E, Stepanov M, Ster A, Stoll SP, Sugitate T, Sullivan JP, Takagui EM, Taketani A, Tamai M, Tanaka KH, Tanaka Y, Tanida K, Tannenbaum MJ, Tarján P, Tepe JD, Thomas TL, Tojo J, Torii H, Towell RS, Tserruya I, Tsuruoka H, Tuli SK, Tydesjö H, Tyurin N, van Hecke HW, Velkovska J, Velkovsky M, Veszprémi V, Villatte L, Vinogradov AA, Volkov MA, Vznuzdaev E, Wang XR, Watanabe Y, White SN, Wohn FK, Woody CL, Xie W, Yang Y, Yanovich A, Yokkaichi S, Young GR, Yushmanov IE, Zajc WA, Zhang C, Zhou S, Zhou SJ, Zolin L. Single electrons from heavy-flavor decays in collisions at. PHYSICAL REVIEW LETTERS 2006; 96:032001. [PMID: 16486684 DOI: 10.1103/physrevlett.96.032001] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2005] [Indexed: 05/06/2023]
Abstract
The invariant differential cross section for inclusive electron production in p+p collisions at [FORMULA: SEE TEXT] has been measured by the PHENIX experiment at the BNL Relativistic Heavy Ion Collider over the transverse momentum range 0.4<or=pT<OR=5.0 GeV/c in the central rapidity region ([FORMULA: SEE TEXT]). The contribution to the inclusive electron spectrum from semileptonic decays of hadrons carrying heavy flavor, i.e., charm quarks or, at high , bottom quarks, is determined via three independent methods. The resulting electron spectrum from heavy-flavor decays is compared to recent leading and next-to-leading order perturbative QCD calculations. The total cross section of charm quark-antiquark pair production is determined to be [FORMULA: SEE TEXT].
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Adler SS, Afanasiev S, Aidala C, Ajitanand NN, Akiba Y, Alexander J, Amirikas R, Aphecetche L, Aronson SH, Averbeck R, Awes TC, Azmoun R, Babintsev V, Baldisseri A, Barish KN, Barnes PD, Bassalleck B, Bathe S, Batsouli S, Baublis V, Bazilevsky A, Belikov S, Berdnikov Y, Bhagavatula S, Boissevain JG, Borel H, Borenstein S, Brooks ML, Brown DS, Bruner N, Bucher D, Buesching H, Bumazhnov V, Bunce G, Burward-Hoy JM, Butsyk S, Camard X, Chai JS, Chand P, Chang WC, Chernichenko S, Chi CY, Chiba J, Chiu M, Choi IJ, Choi J, Choudhury RK, Chujo T, Cianciolo V, Cobigo Y, Cole BA, Constantin P, d'Enterria D, David G, Delagrange H, Denisov A, Deshpande A, Desmond EJ, Devismes A, Dietzsch O, Drapier O, Drees A, du Rietz R, Durum A, Dutta D, Efremenko YV, El Chenawi K, Enokizono A, En'yo H, Esumi S, Ewell L, Fields DE, Fleuret F, Fokin SL, Fox BD, Fraenkel Z, Frantz JE, Franz A, Frawley AD, Fung SY, Garpman S, Ghosh TK, Glenn A, Gogiberidze G, Gonin M, Gosset J, Goto Y, de Cassagnac RG, Grau N, Greene SV, Perdekamp MG, Guryn W, Gustafsson HA, Hachiya T, Haggerty JS, Hamagaki H, Hansen AG, Hartouni EP, Harvey M, Hayano R, Hayashi N, He X, Heffner M, Hemmick TK, Heuser JM, Hibino M, Hill JC, Holzmann W, Homma K, Hong B, Hoover A, Ichihara T, Ikonnikov VV, Imai K, Isenhower D, Ishihara M, Issah M, Isupov A, Jacak BV, Jang WY, Jeong Y, Jia J, Jinnouchi O, Johnson BM, Johnson SC, Joo KS, Jouan D, Kametani S, Kamihara N, Kaneta M, Kang JH, Kapoor SS, Katou K, Kelly S, Khachaturov B, Khanzadeev A, Kikuchi J, Kim DH, Kim DJ, Kim DW, Kim E, Kim GB, Kim HJ, Kistenev E, Kiyomichi A, Kiyoyama K, Klein-Boesing C, Kobayashi H, Kochenda L, Kochetkov V, Koehler D, Kohama T, Kopytine M, Kotchetkov D, Kozlov A, Kroon PJ, Kuberg CH, Kurita K, Kuroki Y, Kweon MJ, Kwon Y, Kyle GS, Lacey R, Ladygin V, Lajoie JG, Lebedev A, Leckey S, Lee DM, Lee S, Leitch MJ, Li XH, Lim H, Litvinenko A, Liu MX, Liu Y, Maguire CF, Makdisi YI, Malakhov A, Manko VI, Mao Y, Martinez G, Marx MD, Masui H, Matathias F, Matsumoto T, McGaughey PL, Melnikov E, Messer F, Miake Y, Milan J, Miller TE, Milov A, Mioduszewski S, Mischke RE, Mishra GC, Mitchell JT, Mohanty AK, Morrison DP, Moss JM, Mühlbacher F, Mukhopadhyay D, Muniruzzaman M, Murata J, Nagamiya S, Nagle JL, Nakamura T, Nandi BK, Nara M, Newby J, Nilsson P, Nyanin AS, Nystrand J, O'Brien E, Ogilvie CA, Ohnishi H, Ojha ID, Okada K, Ono M, Onuchin V, Oskarsson A, Otterlund I, Oyama K, Ozawa K, Pal D, Palounek APT, Pantuev V, Papavassiliou V, Park J, Parmar A, Pate SF, Peitzmann T, Peng JC, Peresedov V, Pinkenburg C, Pisani RP, Plasil F, Purschke ML, Purwar AK, Rak J, Ravinovich I, Read KF, Reuter M, Reygers K, Riabov V, Riabov Y, Roche G, Romana A, Rosati M, Rosnet P, Ryu SS, Sadler ME, Saito N, Sakaguchi T, Sakai M, Sakai S, Samsonov V, Sanfratello L, Santo R, Sato HD, Sato S, Sawada S, Schutz Y, Semenov V, Seto R, Shaw MR, Shea TK, Shibata TA, Shigaki K, Shiina T, Silva CL, Silvermyr D, Sim KS, Singh CP, Singh V, Sivertz M, Soldatov A, Soltz RA, Sondheim WE, Sorensen SP, Sourikova IV, Staley F, Stankus PW, Stenlund E, Stepanov M, Ster A, Stoll SP, Sugitate T, Sullivan JP, Takagui EM, Taketani A, Tamai M, Tanaka KH, Tanaka Y, Tanida K, Tannenbaum MJ, Tarján P, Tepe JD, Thomas TL, Tojo J, Torii H, Towell RS, Tserruya I, Tsuruoka H, Tuli SK, Tydesjö H, Tyurin N, van Hecke HW, Velkovska J, Velkovsky M, Veszprémi V, Villatte L, Vinogradov AA, Volkov MA, Vznuzdaev E, Wang XR, Watanabe Y, White SN, Wohn FK, Woody CL, Xie W, Yang Y, Yanovich A, Yokkaichi S, Young GR, Yushmanov IE, Zajc WA, Zhang C, Zhou S, Zhou SJ, Zolin L. Measurement of identified and inclusive photon second-harmonic parameter and implications for direct photon production in [FORMULA: SEE TEXT] Au+Au. PHYSICAL REVIEW LETTERS 2006; 96:032302. [PMID: 16486688 DOI: 10.1103/physrevlett.96.032302] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2005] [Indexed: 05/06/2023]
Abstract
The azimuthal distribution of identified pi0 and inclusive photons has been measured in [FORMULA: SEE TEXT] Au+Au collisions with the PHENIX experiment at the Relativistic Heavy-Ion Collider (RHIC). The second-harmonic parameter (nu2) was measured to describe the observed anisotropy of the azimuthal distribution. The measured inclusive photon is consistent with the value expected for the photons from hadron decay and is also consistent with the lack of direct photon signal over the measured pT range 1-6 GeV/c. An attempt is made to extract nu2 of direct photons.
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Adler SS, Afanasiev S, Aidala C, Ajitanand NN, Akiba Y, Alexander J, Amirikas R, Aphecetche L, Aronson SH, Averbeck R, Awes TC, Azmoun R, Babintsev V, Baldisseri A, Barish KN, Barnes PD, Bassalleck B, Bathe S, Batsouli S, Baublis V, Bazilevsky A, Belikov S, Berdnikov Y, Bhagavatula S, Boissevain JG, Borel H, Borenstein S, Brooks ML, Brown DS, Bruner N, Bucher D, Buesching H, Bumazhnov V, Bunce G, Burward-Hoy JM, Butsyk S, Camard X, Chai JS, Chand P, Chang WC, Chernichenko S, Chi CY, Chiba J, Chiu M, Choi IJ, Choi J, Choudhury RK, Chujo T, Cianciolo V, Cobigo Y, Cole BA, Constantin P, d'Enterria D, David G, Delagrange H, Denisov A, Deshpande A, Desmond EJ, Devismes A, Dietzsch O, Drapier O, Drees A, du Rietz R, Durum A, Dutta D, Efremenko YV, Egdemir J, El Chenawi K, Enokizono A, En'yo H, Esumi S, Ewell L, Fields DE, Fleuret F, Fokin SL, Fox BD, Fraenkel Z, Frantz JE, Franz A, Frawley AD, Fung SY, Garpman S, Ghosh TK, Glenn A, Gogiberidze G, Gonin M, Gosset J, Goto Y, Granier de Cassagnac R, Grau N, Greene SV, Grosse Perdekamp M, Guryn W, Gustafsson HA, Hachiya T, Haggerty JS, Hamagaki H, Hansen AG, Hartouni EP, Harvey M, Hayano R, Hayashi N, He X, Heffner M, Hemmick TK, Heuser JM, Hibino M, Hill JC, Holzmann W, Homma K, Hong B, Hoover A, Ichihara T, Ikonnikov VV, Imai K, Isenhower D, Ishihara M, Issah M, Isupov A, Jacak BV, Jang WY, Jeong Y, Jia J, Jinnouchi O, Johnson BM, Johnson SC, Joo KS, Jouan D, Kametani S, Kamihara N, Kang JH, Kapoor SS, Katou K, Kelly S, Khachaturov B, Khanzadeev A, Kikuchi J, Kim DH, Kim DJ, Kim DW, Kim E, Kim GB, Kim HJ, Kistenev E, Kiyomichi A, Kiyoyama K, Klein-Boesing C, Kobayashi H, Kochenda L, Kochetkov V, Koehler D, Kohama T, Kopytine M, Kotchetkov D, Kozlov A, Kroon PJ, Kuberg CH, Kurita K, Kuroki Y, Kweon MJ, Kwon Y, Kyle GS, Lacey R, Ladygin V, Lajoie JG, Lebedev A, Leckey S, Lee DM, Lee S, Leitch MJ, Li XH, Lim H, Litvinenko A, Liu MX, Liu Y, Maguire CF, Makdisi YI, Malakhov A, Manko VI, Mao Y, Martinez G, Marx MD, Masui H, Matathias F, Matsumoto T, McGaughey PL, Melnikov E, Messer F, Miake Y, Milan J, Miller TE, Milov A, Mioduszewski S, Mischke RE, Mishra GC, Mitchell JT, Mohanty AK, Morrison DP, Moss JM, Mühlbacher F, Mukhopadhyay D, Muniruzzaman M, Murata J, Nagamiya S, Nagle JL, Nakamura T, Nandi BK, Nara M, Newby J, Nilsson P, Nyanin AS, Nystrand J, O'Brien E, Ogilvie CA, Ohnishi H, Ojha ID, Okada K, Ono M, Onuchin V, Oskarsson A, Otterlund I, Oyama K, Ozawa K, Pal D, Palounek APT, Pantuev V, Papavassiliou V, Park J, Parmar A, Pate SF, Peitzmann T, Peng JC, Peresedov V, Pinkenburg C, Pisani RP, Plasil F, Purschke ML, Purwar AK, Rak J, Ravinovich I, Read KF, Reuter M, Reygers K, Riabov V, Riabov Y, Roche G, Romana A, Rosati M, Rosnet P, Ryu SS, Sadler ME, Saito N, Sakaguchi T, Sakai M, Sakai S, Samsonov V, Sanfratello L, Santo R, Sato HD, Sato S, Sawada S, Schutz Y, Semenov V, Seto R, Shaw MR, Shea TK, Shibata TA, Shigaki K, Shiina T, Silva CL, Silvermyr D, Sim KS, Singh CP, Singh V, Sivertz M, Soldatov A, Soltz RA, Sondheim WE, Sorensen SP, Sourikova IV, Staley F, Stankus PW, Stenlund E, Stepanov M, Ster A, Stoll SP, Sugitate T, Sullivan JP, Takagui EM, Taketani A, Tamai M, Tanaka KH, Tanaka Y, Tanida K, Tannenbaum MJ, Tarján P, Tepe JD, Thomas TL, Tojo J, Torii H, Towell RS, Tserruya I, Tsuruoka H, Tuli SK, Tydesjö H, Tyurin N, van Hecke HW, Velkovska J, Velkovsky M, Veszprémi V, Villatte L, Vinogradov AA, Volkov MA, Vznuzdaev E, Wang XR, Watanabe Y, White SN, Wohn FK, Woody CL, Xie W, Yang Y, Yanovich A, Yokkaichi S, Young GR, Yushmanov IE, Zajc WA, Zhang C, Zhou S, Zhou SJ, Zolin L. Nuclear modification of electron spectra and implications for heavy quark energy loss in Au+Au collisions at [FORMULA: SEE TEXT]. PHYSICAL REVIEW LETTERS 2006; 96:032301. [PMID: 16486687 DOI: 10.1103/physrevlett.96.032301] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2005] [Indexed: 05/06/2023]
Abstract
The PHENIX experiment has measured midrapidity ([FORMULA: SEE TEXT]) transverse momentum spectra ([FORMULA: SEE TEXT]) of electrons as a function of centrality in Au+Au collisions at [FORMULA: SEE TEXT]. Contributions from photon conversions and from light hadron decays, mainly Dalitz decays of pi0 and eta mesons, were removed. The resulting nonphotonic electron spectra are primarily due to the semileptonic decays of hadrons carrying heavy quarks. Nuclear modification factors were determined by comparison to nonphotonic electrons in p+p collisions. A significant suppression of electrons at high pT is observed in central Au+Au collisions, indicating substantial energy loss of heavy quarks.
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Furukawa M, Kawamoto T, Noshiro M, Honda KK, Sakai M, Fujimoto K, Honma S, Honma K, Hamada T, Kato Y. Clock gene expression in the submandibular glands. J Dent Res 2005; 84:1193-7. [PMID: 16304453 DOI: 10.1177/154405910508401219] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022] Open
Abstract
Clock genes, which mediate molecular circadian rhythms, are expressed in a circadian fashion in the suprachiasmatic nucleus and in various peripheral tissues. To establish a molecular basis for circadian regulation in the salivary glands, we examined expression profiles of clock-related genes and salivary gland-characteristic genes. Clock-related genes-including Per1, Per2, Cry1, Bmal1, Dec1, Dec2, Dbp, and Reverbalpha-showed robust circadian expression rhythms in the submandibular glands in 12:12-hour light-dark conditions. In addition, a robust circadian rhythm was observed in amylase 1 mRNA levels, whereas the expression of other salivary-gland-characteristic genes examined was not rhythmic. The Clock mutation resulted in increased or decreased mRNA levels of Per2, Bmal1, Dec1, Dec2, and Dbp, and in Cry1-/- background, Cry2 disruption also increased or decreased mRNA levels of these clock-related genes and the amylase 1 gene. These findings indicate that the Clock- and Cry-dependent molecular clock system is active in the salivary glands.
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Adler SS, Afanasiev S, Aidala C, Ajitanand NN, Akiba Y, Alexander J, Amirikas R, Aphecetche L, Aronson SH, Averbeck R, Awes TC, Azmoun R, Babintsev V, Baldisseri A, Barish KN, Barnes PD, Bassalleck B, Bathe S, Batsouli S, Baublis V, Bauer F, Bazilevsky A, Belikov S, Berdnikov Y, Bhagavatula S, Boissevain JG, Borel H, Borenstein S, Brooks ML, Brown DS, Bruner N, Bucher D, Buesching H, Bumazhnov V, Bunce G, Burward-Hoy JM, Butsyk S, Camard X, Chai JS, Chand P, Chang WC, Chernichenko S, Chi CY, Chiba J, Chiu M, Choi IJ, Choi J, Choudhury RK, Chujo T, Cianciolo V, Cobigo Y, Cole BA, Constantin P, d'Enterria D, David G, Delagrange H, Denisov A, Deshpande A, Desmond EJ, Devismes A, Dietzsch O, Drapier O, Drees A, Drees KA, du Rietz R, Durum A, Dutta D, Efremenko YV, El Chenawi K, Enokizono A, En'yo H, Esumi S, Ewell L, Fields DE, Fleuret F, Fokin SL, Fox BD, Fraenkel Z, Frantz JE, Franz A, Frawley AD, Fung SY, Garpman S, Ghosh TK, Glenn A, Gogiberidze G, Gonin M, Gosset J, Goto Y, Granier de Cassagnac R, Grau N, Greene SV, Grosse Perdekamp M, Guryn W, Gustafsson HA, Hachiya T, Haggerty JS, Hamagaki H, Hansen AG, Hartouni EP, Harvey M, Hayano R, Hayashi N, He X, Heffner M, Hemmick TK, Heuser JM, Hibino M, Hill JC, Holzmann W, Homma K, Hong B, Hoover A, Ichihara T, Ikonnikov VV, Imai K, Isenhower D, Ishihara M, Issah M, Isupov A, Jacak BV, Jang WY, Jeong Y, Jia J, Jinnouchi O, Johnson BM, Johnson SC, Joo KS, Jouan D, Kametani S, Kamihara N, Kang JH, Kapoor SS, Katou K, Kelly S, Khachaturov B, Khanzadeev A, Kikuchi J, Kim DH, Kim DJ, Kim DW, Kim E, Kim GB, Kim HJ, Kistenev E, Kiyomichi A, Kiyoyama K, Klein-Boesing C, Kobayashi H, Kochenda L, Kochetkov V, Koehler D, Kohama T, Kopytine M, Kotchetkov D, Kozlov A, Kroon PJ, Kuberg CH, Kurita K, Kuroki Y, Kweon MJ, Kwon Y, Kyle GS, Lacey R, Ladygin V, Lajoie JG, Lebedev A, Leckey S, Lee DM, Lee S, Leitch MJ, Li XH, Lim H, Litvinenko A, Liu MX, Liu Y, Maguire CF, Makdisi YI, Malakhov A, Manko VI, Mao Y, Martinez G, Marx MD, Masui H, Matathias F, Matsumoto T, McGaughey PL, Melnikov E, Messer F, Miake Y, Milan J, Miller TE, Milov A, Mioduszewski S, Mischke RE, Mishra GC, Mitchell JT, Mohanty AK, Morrison DP, Moss JM, Mühlbacher F, Mukhopadhyay D, Muniruzzaman M, Murata J, Nagamiya S, Nagle JL, Nakamura T, Nandi BK, Nara M, Newby J, Nilsson P, Nyanin AS, Nystrand J, O'Brien E, Ogilvie CA, Ohnishi H, Ojha ID, Okada K, Ono M, Onuchin V, Oskarsson A, Otterlund I, Oyama K, Ozawa K, Pal D, Palounek APT, Pantuev V, Papavassiliou V, Park J, Parmar A, Pate SF, Peitzmann T, Peng JC, Peresedov V, Pinkenburg C, Pisani RP, Plasil F, Purschke ML, Purwar AK, Rak J, Ravinovich I, Read KF, Reuter M, Reygers K, Riabov V, Riabov Y, Roche G, Romana A, Rosati M, Rosnet P, Ryu SS, Sadler ME, Saito N, Sakaguchi T, Sakai M, Sakai S, Samsonov V, Sanfratello L, Santo R, Sato HD, Sato S, Sawada S, Schutz Y, Semenov V, Seto R, Shaw MR, Shea TK, Shibata TA, Shigaki K, Shiina T, Silva CL, Silvermyr D, Sim KS, Singh CP, Singh V, Sivertz M, Soldatov A, Soltz RA, Sondheim WE, Sorensen SP, Sourikova IV, Staley F, Stankus PW, Stenlund E, Stepanov M, Ster A, Stoll SP, Sugitate T, Sullivan JP, Takagui EM, Taketani A, Tamai M, Tanaka KH, Tanaka Y, Tanida K, Tannenbaum MJ, Tarján P, Tepe JD, Thomas TL, Tojo J, Torii H, Towell RS, Tserruya I, Tsuruoka H, Tuli SK, Tydesjö H, Tyurin N, van Hecke HW, Velkovska J, Velkovsky M, Veszprémi V, Villatte L, Vinogradov AA, Volkov MA, Vznuzdaev E, Wang XR, Watanabe Y, White SN, Wohn FK, Woody CL, Xie W, Yang Y, Yanovich A, Yokkaichi S, Young GR, Yushmanov IE, Zajc WA, Zhang C, Zhou S, Zhou SJ, Zolin L. Measurement of transverse single-spin asymmetries for midrapidity production of neutral pions and charged hadrons in polarized p + p collisions at square root(s) = 200 GeV. PHYSICAL REVIEW LETTERS 2005; 95:202001. [PMID: 16384048 DOI: 10.1103/physrevlett.95.202001] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2005] [Indexed: 05/05/2023]
Abstract
Transverse single-spin asymmetries to probe the transverse-spin structure of the proton have been measured for neutral pions and nonidentified charged hadrons from polarized proton-proton collisions at midrapidity and square root(s) = 200 GeV. The data cover a transverse momentum (pT) range 1.0-5.0 GeV/c for neutral pions and 0.5-5.0 GeV/c for charged hadrons, at a Feynman-x value of approximately zero. The asymmetries seen in this previously unexplored kinematic region are consistent with zero within errors of a few percent. In addition, the inclusive charged hadron cross section at midrapidity from 0.5 < pT < 7.0 GeV/c is presented and compared to next-to-leading order perturbative QCD (pQCD) calculations. Successful description of the unpolarized cross section above approximately 2 GeV/c suggests that pQCD is applicable in the interpretation of the asymmetry results in the relevant kinematic range.
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Sakai M, Masai E, Asami H, Sugiyama K, Kimbara K, Fukuda M. Diversity of 2,3-dihydroxybiphenyl dioxygenase genes in a strong PCB degrader, Rhodococcus sp. strain RHA1. J Biosci Bioeng 2005; 93:421-7. [PMID: 16233225 DOI: 10.1016/s1389-1723(02)80078-0] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2001] [Accepted: 02/08/2002] [Indexed: 11/17/2022]
Abstract
Two 2,3-dihydroxybiphenyl (23DHBP) dioxygenase genes, bphC1 and etbC involved in the degradation of polychlorinated biphenyl(s) (PCBs) have been isolated and characterized from a strong PCB degrader, Rhodococcus sp. RHA1. In this study, four new 23DHBP dioxygenase genes, designated as bphC2, bphC3, bphC4, and bphC5 were isolated from RHA1, and their nucleotide sequences were determined. Based on amino acid sequence similarities, all of the newly isolated bphC genes could be categorized into type I along with BphC1 and EtbC [Eltis, L.D. and Bolin, J.T., J. Bacteriol., 178, 5930-5937 (1996)]. Six bphC genes, including bphC1, etbC, and four new genes, were expressed in Escherichia coli to determine their substrate specificity. The activities of BphC2, BphC3, BphC4, and BphC5 were found to be specific to 23DHBP, while BphC1 and EtbC exhibited activities towards compounds other than 23DHBP, including catechol (CAT) and 3-methylcatechol (3MC). RNA slot blot hybridization analysis indicated that only bphC5 was transcribed among the newly isolated bphC in RHA1 cells grown on biphenyl and ethylbenzene. The nucleotide sequence of the flanking region of each bphC revealed a homolog of the 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate (HOPD) hydrolase gene, bphD, just upstream of bphC5. The bphC5 and putative bphD genes may constitute an operon and play a role in the degradation of biphenyl and PCBs together with bphC1 and etbC. In contrast, the bphC2, bphC3, and bphC4 genes may not be involved in biphenyl and PCB degradation.
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Suenaga H, Nishi A, Watanabe T, Sakai M, Furukawa K. Engineering a hybrid pseudomonad to acquire 3,4-dioxygenase activity for polychlorinated biphenyls. J Biosci Bioeng 2005; 87:430-5. [PMID: 16232495 DOI: 10.1016/s1389-1723(99)80090-5] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/1998] [Accepted: 12/21/1998] [Indexed: 11/23/2022]
Abstract
We constructed a hybrid strain that acquired 3,4-dioxygenase activity for polychlorinated biphenyls (PCBs). This strain, KF707-D34, possessed a chimeric biphenyl dioxygenase gene, of which a portion of bphA1 (coding for a large subunit of biphenyl dioxygenase) of Pseudomonas pseudoalcaligenes KF707 was replaced with that of a PCB-degrader, Burkholderia cepacia LB400 by homologous recombination. KF707-D34 retained the ability to degrade 4,4'-dichlorobiphenyl via 2,3-dioxygenation in a fashion identical to that of KF707 and gained novel capability to degrade 2,5,4'-trichlorobiphenyl and 2,5,2',5'-tetrachlorobiphenyl via 3,4-dioxygenation in a fashion identical to that of LB400. Sequence analysis of bphA1 from KF707-D34 revealed that three nucleotides in the 3'-terminal region of KF707 bphA1 were changed to correspond to those in LB400 bphA1. The resulting BphA1 protein in KF707-D34 was changed at position 376 from threonine (Thr) to asparagine (Asn). The results demonstrate that a minor alteration of the amino acid sequence in BphA1 improved the PCB degradation capability in biphenyl-utilizing bacteria.
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Savan R, Kono T, Itami T, Sakai M. Loop-mediated isothermal amplification: an emerging technology for detection of fish and shellfish pathogens. JOURNAL OF FISH DISEASES 2005; 28:573-81. [PMID: 16302951 PMCID: PMC7197467 DOI: 10.1111/j.1365-2761.2005.00670.x] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Fish and shellfish diseases are a constant threat to the sustainability and economic viability of aquaculture. Early diagnosis plays a vital role in management of fish and shellfish diseases. Traditionally, various biochemical and serological tests have been used for fish disease diagnosis. However, the time and expertise required for such diagnoses makes it difficult for aquaculturists to easily adopt them under production conditions. Polymerase chain reaction and probe-based nucleic acid detection have become increasingly popular in fish and shellfish diagnostics. Recently, a novel technique called loop-mediated isothermal amplification (LAMP) has been developed, which is highly sensitive and rapid. LAMP has been used for the detection of bacterial, viral, fungal and parasitic diseases in both animal and plants. In aquaculture, LAMP-based detection of pathogens like Edwardsiella tarda, E. ictaluri, Nocardia seriolae, Tetracapsuloides bryosalmonae, white spot syndrome virus and infectious haematopoietic necrosis virus have been reported. In this review, the application of LAMP for the detection of aquaculture-associated pathogens is discussed.
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Oba H, Yagishita A, Terada H, Barkovich AJ, Kutomi K, Yamauchi T, Furui S, Shimizu T, Uchigata M, Matsumura K, Sonoo M, Sakai M, Takada K, Harasawa A, Takeshita K, Kohtake H, Tanaka H, Suzuki S. New and reliable MRI diagnosis for progressive supranuclear palsy. Neurology 2005; 64:2050-5. [PMID: 15985570 DOI: 10.1212/01.wnl.0000165960.04422.d0] [Citation(s) in RCA: 226] [Impact Index Per Article: 11.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
OBJECTIVE To evaluate the area of the midbrain and pons on mid-sagittal MRI in patients with progressive supranuclear palsy (PSP), Parkinson disease (PD), and multiple-system atrophy of the Parkinson type (MSA-P), compare these appearances and values with those of normal control subjects, and establish diagnostic MRI criteria for the diagnosis of PSP. METHODS The authors prospectively studied MRI of 21 patients with PSP, 23 patients with PD, 25 patients with MSA-P, and 31 age-matched normal control subjects. The areas of the midbrain tegmentum and the pons were measured on mid-sagittal MRI using the display tools of a workstation. The ratio of the area of the midbrain to the area of the pons was also evaluated in all subjects. RESULTS The average midbrain area of the patients with PSP (56.0 mm2) was significantly smaller than that of the patients with PD (103.0 mm2) and MSA-P (97.2 mm2) and that of the age-matched control group (117.7 mm2). The values of the area of the midbrain showed no overlap between patients with PSP and patients with PD or normal control subjects. However, patients with MSA-P showed some overlap of the values of individual areas with values from patients with PSP. The ratio of the area of the midbrain to the area of pons in the patients with PSP (0.124) was significantly smaller than that in those with PD (0.208) and MSA-P (0.266) and in normal control subjects (0.237). Use of the ratio allowed differentiation between the PSP group and the MSA-P group. CONCLUSION The area of the midbrain on mid-sagittal MRI can differentiate PSP from PD, MSA-P, and normal aging.
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Maruyama H, Watari T, Miura T, Sakai M, Takahashi T, Koie H, Yamaya Y, Asano K, Edamura K, Sato T, Tanaka S, Hasegawa A, Tokuriki M. Plasma thrombinantithrombin complex concentrations in dogs with malignant tumours. Vet Rec 2005; 156:839-40. [PMID: 15980137 DOI: 10.1136/vr.156.26.839] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
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