Potential of plant beneficial bacteria and arbuscular mycorrhizal fungi in phytoremediation of metal-contaminated saline soils

Application of Cerium Dioxide Nanoparticles and Chromium-Resistant Bacteria Reduced Chromium Toxicity in Sunflower Plants

The continuous increase in the heavy metals concentration in the soil due to anthropogenic activities has become a global issue. The chromium, especially hexavalent chromium, is highly toxic for living organisms due to high mobility, solubility, and carcinogenic properties. Considering the beneficial role of nanoparticles and bacteria in alleviating the metal stress in plants, a study was carried out to evaluate the role of cerium dioxide (CeO₂) nanoparticles (NPs) and Staphylococcus aureus in alleviating the chromium toxicity in sunflower plants. Sunflower plants grown in chromium (Cr) contaminated soil (0, 25, and 50 mg kg^-1) were treated with CeO₂ nanoparticles (0, 25, and 50 mg L^-1) and S. aureus. The application of Cerium Dioxide Nanoparticles (CeO₂ NPs) significantly improved plant growth and biomass production, reduced oxidative stress, and enhanced the enzymatic activities in the sunflower plant grown under chromium stress. The application of S. aureus further enhanced the beneficial role of nanoparticles in alleviating metal-induced toxicity. The maximum improvement was noted in plants treated with both nanoparticles and S. aureus. The augmented application of CeO₂ NPs (50 mg l^-1) at Cr 50 mg kg^-1 increased the chl a contents from 1.2 to 2.0, chl b contents 0.5 to 0.8 and mg g^-1 FW, and decreased the leakage of the electrolyte from 121 to 104%. The findings proved that the application of CeO₂ nanoparticles and S. aureus could significantly ameliorate the metal-induced stress in sunflower plants. The findings from this study can provide new horizons for research in the application of nanoparticles in phytoremediation and bioremediation.

Plants-Microorganisms-Based Bioremediation for Heavy Metal Cleanup: Recent Developments, Phytoremediation Techniques, Regulation Mechanisms, and Molecular Responses

Rapid industrialization, mine tailings runoff, and agricultural activities are often detrimental to soil health and can distribute hazardous metal(loid)s into the soil environment, with harmful effects on human and ecosystem health. Plants and their associated microbes can be deployed to clean up and prevent environmental pollution. This green technology has emerged as one of the most attractive and acceptable practices for using natural processes to break down organic contaminants or accumulate and stabilize metal pollutants by acting as filters or traps. This review explores the interactions between plants, their associated microbiomes, and the environment, and discusses how they shape the assembly of plant-associated microbial communities and modulate metal(loid)s remediation. Here, we also overview microbe-heavy-metal(loid)s interactions and discuss microbial bioremediation and plants with advanced phytoremediation properties approaches that have been successfully used, as well as their associated biological processes. We conclude by providing insights into the underlying remediation strategies' mechanisms, key challenges, and future directions for the remediation of metal(loid)s-polluted agricultural soils with environmentally friendly techniques.

Different responses of bacteria and fungi to environmental variables and corresponding community assembly in Sb-contaminated soil

Bacterial communities in antimony (Sb) polluted soils have been well addressed, whereas the important players fungal communities are far less studied to date. Here, we report different responses of bacterial and fungal communities to Sb contamination and the ecological processes controlling their community assembly. Soil samples in the Xikuangshan mining area were collected and subjected to high through-put sequencing of 16S rRNA and ITS1 to investigate bacterial and fungal communities, respectively, along an Sb gradient. Sb speciation in the soil samples and other physicochemical parameters were analyzed as well. Bacterial communities were dominated by Deltaproteobacteria in the soil with highest Sb concentration, whereas Chloroflexi were dominant in the soil with lowest Sb concentration. Fungal communities in high-Sb soils were predominated by unclassified Fungi, whilst Leotiomycetes were dominant in low-Sb soil samples. Multivariate analysis indicated that Sb, pH and soil texture were the main drivers to strongly impact microbial communities. We further identified Sb-resistant microbial groups via correlation analysis. In total, 18 bacterial amplicon sequence variants (ASVs) were found to potentially involve in biogeochemical cycles such as Sb oxidation, sulfur oxidation or nitrate reduction, whereas 12 fungal ASVs were singled out for potential heavy metal resistance and plant growth promotion. Community assembly analysis revealed that variable selection contributed 100% to bacterial community assembly under acidic or high Sb concentration conditions, whereas homogeneous selection dominated fungal community assembly with a contribution over 78.9%. The community assembly of Sb-resistant microorganisms was mainly controlled by stochastic process. The results offer new insights into microbial ecology in Sb-contaminated soils, especially on the different responses of microbial communities under identical environmental stress and the different ecological processes underlining bacterial and fungal community assembly.

Practical limitations of bioaugmentation in treating heavy metal contaminated soil and role of plant growth promoting bacteria in phytoremediation as a promising alternative approach

Bioaugmentation, the addition of cultured microorganisms to enhance the currently existing microbial community, is an option to remediate contaminated areas. Several studies reported the success of the bioaugmentation method in treating heavy metal contaminated soil, but concerns related to the applicability of this method in real-scale application were raised. A comprehensive analysis of the mechanisms of heavy metal treatment by microbes (especially bacteria) and the concerns related to the possible application in the real scale were juxtaposed to show the weakness of the claim. This review proposes the use of bioaugmentation-assisted phytoremediation in treating heavy metal contaminated soil. The performance of bioaugmentation-assisted phytoremediation in treating heavy metal contaminated soil as well as the mechanisms of removal and interactions between plants and microbes are also discussed in detail. Bioaugmentation-assisted phytoremediation shows greater efficiencies and performs complete metal removal from soil compared with only bioaugmentation. Research related to selection of hyperaccumulator species, potential microbial species, analysis of interaction mechanisms, and potential usage of treating plant biomass after treatment are suggested as future research directions to enhance this currently proposed topic.

Plant-Mycorrhizal Fungi Interactions in Phytoremediation of Geogenic Contaminated Soils

Soil contamination by geogenic contaminants (GCs) represents an imperative environmental problem. Various soil remediation methods have been successfully employed to ameliorate the health risks associated with GCs. Phytoremediation is considered as an eco-friendly and economical approach to revegetate GC-contaminated soils. However, it is a very slow process, as plants take a considerable amount of time to gain biomass. Also, the process is limited only to the depth and surface area of the root. Inoculation of arbuscular mycorrhizal fungi (AMF) with remediating plants has been found to accelerate the phytoremediation process by enhancing plant biomass and their metal accumulation potential while improving the soil physicochemical and biological characteristics. Progress in the field application is hindered by a lack of understanding of complex interactions between host plant and AMF that contribute to metal detoxification/(im)mobilization/accumulation/translocation. Thus, this review is an attempt to reveal the underlying mechanisms of plant-AMF interactions in phytoremediation.

Response of Rhizosphere Microbial Community in High-PAH-Contaminated Soil Using Echinacea purpurea (L.) Moench

Under polycyclic aromatic hydrocarbon (PAH) pollution conditions (149.17–187.54 mg/kg), we had found the dominant flora of PAHs by observing the response of the soil microbial community after planting purple coneflower (Echinacea purpurea (L.) Moench). In this study, pot experiments were conducted in a growth chamber to explore the changes in the rhizosphere microbial community structure during remediation of heavily PAH-contaminated soil using purple coneflower (Echinacea purpurea (L.) Moench). The phospholipid fatty acid (PLFA) content in the soil was measured during four periods before and after planting, and the results showed that: (i) at 120 days, E. purpurea can regulate the microbial community structure but had no significant effect on soil microbial diversity, (ii) at 120 days, the number of PLFAs characterizing actinomycetes, bacteria, and fungi increased, and both Gram-negative bacteria and Arbuscular mycorrhizal fungi (AMF) were significant with the observed PLFA level (p < 0.05), and (iii) the results indicated that AMF and Gram-negative bacteria represent some of the main factors that can promote the degradation of PAHs. The results obtained in this work are important to future research on PAH-degradation-functional genes and degradation mechanisms of the selection of flora.

A critical review on the phytoremediation of heavy metals from environment: Performance and challenges

Phytoremediation is an effective, green and economical technique. Different types of phytoremediation methods can be used for the reduction of heavy metal contaminations, such as phytoextraction, phytovolatilization, phytostabilization and phytofiltration. The biomass of plants and the bioavailability of heavy metals in soil are the key factors affecting the efficiency of phytoremediation. It's worth noting that the low remediation efficiency and the lack of effective disposal methods for contaminated biomass have limited its development and application. At present, biological, physical, chemical, agronomic and genetic approaches have been used to enhance phytoremediation. Disposal methods of contaminated biomass usually include pyrolysis, incineration, composting and compaction. They are effective, but are costly and have security problems. Improper disposal of contaminated biomass can lead to leaching of heavy metals. The leaching possibility of different forms of heavy metal in plants is different. Hence, it has great significance to explore the different forms of heavy metals in plants which can help to explore appropriate disposal methods. According to the challenges of phytoremediation, we put forward some views and recommendations for the sustainable and rapid development of phytoremediation technology.

Metallophores production by bacteria isolated from heavy metal-contaminated soil and sediment at Lerma-Chapala Basin

Environmental pollution as a result of heavy metals (HMs) is a worldwide problem and the implementation of eco-friendly remediation technologies is thus required. Metallophores, low molecular weight compounds, could have important biotechnological applications in the fields of agriculture, medicine, and bioremediation. This study aimed to isolate HM-resistant bacteria from soils and sediments of the Lerma-Chapala Basin and evaluated their abilities to produce metallophores and to promote plant growth. Bacteria from the Lerma-Chapala Basin produced metallophores for all the tested metal ions, presented a greater production of As³⁺ metallophores, and showed high HM resistance especially to Zn²⁺, As⁵⁺, and Ni²⁺. A total of 320 bacteria were isolated with 170 strains showing siderophores synthesis. Members of the Delftia and Pseudomonas genera showed above 92 percent siderophore units (psu) during siderophores production and hydroxamate proved to be the most common functional group among the analyzed siderophores. Our results provided evidence that Lerma-Chapala Basin bacteria and their metallophores could potentially be employed in bioremediation processes or may even have potential for applications in other biotechnological fields.

Effects of arbuscular mycorrhizal fungi on frond antimony enrichment, morphology, and proteomics in Pteris cretica var. nervosa during antimony phytoremediation

Pteris cretica var. nervosa is a dominant fern species found in antimony (Sb) mining areas, capable of forming symbiosis with arbuscular mycorrhizal fungi (AMF), especially with those members of the Glomus genus. Despite this fern's relevance and the potential contribution of mycorrhizal symbiosis to phytoremediation, the AMF's impact on P. var. nervosa phytoremediation of Sb remains unknown. Here, we exposed P. var. nervosa to different concentrations of Sb for 6 months. Our results showed that Sb reduced shoot biomass, enlarged the root/shoot ratio, and disrupted the fronds' intracellular structure. AMF inoculation, however, was able to moderate these phenotypic changes and increased the accumulation level of Sb in plants. From a proteomics analysis of this plant's fronds, a total of 283 proteins were identified. Notably, those proteins with catalytic function, carbon fixing and ATP metabolic function were highly enriched. K-means clustering demonstrated protein-changing patterns involved in multiple metabolic pathways during exposure to Sb. Further, these patterns can be moderated by AMF inoculation. Pearson correlations were used to assess the plant biomarkers-soil Sb relationships; This revealed a strong correlation between ribosome alteration and the root/shoot ratio when inoculated with AMF, and a positive correlation between photosynthesis proteins and chlorophyll (SPAD value). Our results indicate AMF could moderate the fronds impairment by maintaining the sufficient protein levels for ribosomal functioning, photosynthesis activity and to counter ROS production. We demonstrate the effective use of AMF associated with P. cretica var. nervosa for Sb phytoremediation and the potential of applying proteomics to better understand the mechanism behind this symbiotic plant physiological response.

Improving cadmium accumulation by Solanum nigrum L. via regulating rhizobacterial community and metabolic function with phosphate-solubilizing bacteria colonization

Soil cadmium (Cd) mobilized with phosphate-solubilizing bacteria (PSB), especially for strains effectively colonized in rhizosphere, is an important pathway for promoting its accumulation by Cd-hyperaccumulators. In this study, screened PSB strains, Acinetobacter pittii (AP) and Escherichia coli (EC), were used to evaluate their effects on Cd mobilization in rhizosphere, Cd accumulation by Solanum nigrum L., and rhizobacterial community and metabolic function under different colonization condition. Results indicated that AP or EC inoculated in soils significantly promoted plant growth, and simultaneously motivated Cd accumulation in S. nigrum L. by 119% and 88%, respectively, when compared with that of uninoculated treatment. Higher efficiency colonization of AP contributed to more organic acids (malic, l-proline, l-alanine, and γ-aminobutanoic) production in the rhizosphere soil and Cd accumulation by S. nigrum L., when compared with that of EC treatment. Taxonomic distribution and co-occurrence network analyses demonstrated that inoculation of AP or EC enriched dominant microbial taxa with plant growth promotion function and keystone taxa related to Cd mobilization in the rhizosphere soil, respectively. Inoculated strains up-regulated the expression of genes related to bacterial mobility, amino acid metabolism, and carbon metabolism among rhizobacterial community. Overall, this study provided a feasible method for soil Cd phytoremediation by promoting Cd mobilization with the enhancement of keystone taxa and organic acid secretion based on the high-efficiency colonization of PSB.

Modelling soil salinity effects on salt water uptake and crop growth using a modified denitrification-decomposition model: A phytoremediation approach

Soil salinization is a widespread problem affecting global food production. Phytoremediation is emerging as a viable and cost-effective technology to reclaim salt-affected soil. However, its efficiency is not clear due to the uncertainty of plant responses in saline soils. The main objective of this paper is to propose a phytoremediation dynamic model (PDM) for salt-affected soil within the process-based biogeochemical denitrification-decomposition (DNDC) model. The PDM represents two salinity processes of phytoremediation: plant salt uptake and salt-affected biomass growth. The salt-soil-plant interaction is simulated as a coupled mass balance equation of water and salt plant uptake. The salt extraction ability by plant is a combination of salt uptake efficiency (F) and transpiration rate. For water filled pore space (WFPS), the statistical measures RMSE, MAE, and R² during the calibration period are 2.57, 2.14, and 0.49, and they are 2.67, 2.34, and 0.56 during the validation period, respectively. For soil salinity, RMSE, MAE, and R² during the calibration period are 0.02, 0.02, and 0.92, and 0.06, 0.04, and 0.68 during the validation period, respectively, which are reasonably good for further scenario analysis. Over the four years, cumulative salt uptake varied based on weather conditions. At the optimal salt uptake efficiency (F = 20), cumulative salt uptake from soil was 16-90% for alfalfa, 11-70% for barley, and 10-80% for spring wheat. While at the lowest salt uptake efficiency (F = 40), cumulative salt uptake was nearly zero for all crops. Although barley has the highest peak transpiration flux, alfalfa and spring wheat have greater cumulative salt uptake because their peak transpiration fluxes occurred more frequently than in barley. For salt-tolerant crops biomass growth depends on their threshold soil salinity which determines their ability to take up salt without affecting biomass growth. In order to phytoremediate salt-affected soil, salt-tolerant crops having longer duration of crop physiological stages should be used, but their phytoremediation effectiveness will depend on weather conditions and the soil environment.

Recent Developments in Microbe-Plant-Based Bioremediation for Tackling Heavy Metal-Polluted Soils

Soil contamination with heavy metals (HMs) is a serious concern for the developing world due to its non-biodegradability and significant potential to damage the ecosystem and associated services. Rapid industrialization and activities such as mining, manufacturing, and construction are generating a huge quantity of toxic waste which causes environmental hazards. There are various traditional physicochemical techniques such as electro-remediation, immobilization, stabilization, and chemical reduction to clean the contaminants from the soil. However, these methods require high energy, trained manpower, and hazardous chemicals make these techniques costly and non-environment friendly. Bioremediation, which includes microorganism-based, plant-based, microorganism-plant associated, and other innovative methods, is employed to restore the contaminated soils. This review covers some new aspects and dimensions of bioremediation of heavy metal-polluted soils. The bioremediation potential of bacteria and fungi individually and in association with plants has been reviewed and critically examined. It is reported that microbes such as Pseudomonas spp., Bacillus spp., and Aspergillus spp., have high metal tolerance, and bioremediation potential up to 98% both individually and when associated with plants such as Trifolium repens, Helianthus annuus, and Vallisneria denseserrulata. The mechanism of microbe's detoxification of metals depends upon various aspects which include the internal structure, cell surface properties of microorganisms, and the surrounding environmental conditions have been covered. Further, factors affecting the bioremediation efficiency and their possible solution, along with challenges and future prospects, are also discussed.

Citric acid and AMF inoculation combination-assisted phytoextraction of vanadium (V) by Medicago sativa in V mining contaminated soil

The use of citric acid (CA) chelator to facilitate metal bioavailability is a promising approach for the phytoextraction of heavy metal contaminants. However, the role of the CA chelator associated with arbuscular mycorrhizal fungi (AMF) inoculation on phytoextraction of vanadium (V) has not been studied. Therefore, in this study, a greenhouse pot experiment was conducted to evaluate the combined effect of CA chelator and AMF inoculation on growth performance and V phytoextraction of plants in V-contaminated soil. The experiment was performed via CA (at 0, 5, and 10 mM kg^-1 soil levels) application alone or in combination with AMF inoculation by Medicago sativa Linn. (M. sativa). Plant biomass, root mycorrhizal colonization, P and V accumulation, antioxidant enzyme activity in plants, and soil chemical speciation of V were evaluated. Results depicted (1) a marked decline in plant biomass and root mycorrhizal colonization in 5- and 10-mM CA treatments which were accompanied by a significant increased V accumulation in plant tissues. The effects could be attributed to the enhanced acid-soluble V fraction transferring from the reducible fraction. (2) The presence of CA significantly enhanced P acquisition while the P/V concentration ratio in plant shoots and roots decreased, owing to the increased V translocation from soil to plant. (3) In both CA-treated soil, AMF-plant symbiosis significantly improved dry weight (31.4-73.3%) and P content (37.3-122.5%) in shoots and roots of M. sativa. The combined treatments also showed markedly contribution in reduction of malondialdehyde (MDA) content (12.8-16.2%) and higher antioxidants (SOD, POD, and CAT) activities in the leaves. This suggests their combination could promote growth performance and stimulate antioxidant response to alleviate V stress induced by CA chelator. (4) Taken together, 10 mM kg^-1 CA application and AMF inoculation combination exhibited a higher amount of extracted V both in plant shoots and roots. Thus, citric acid-AMF-plant symbiosis provides a novel remediation strategy for in situ V phytoextraction by M. sativa in V-contaminated soil.

Alleviation of salinity and metal stress using plant growth-promoting rhizobacteria isolated from semiarid Moroccan copper-mine soils

Phytoremediation is an eco-friendly method for rehabilitation of mine tailing. Some heavy metals and salt-tolerant plant growth-promoting rhizobacteria (PGPR) could be beneficial in alleviating soil salinity and heavy metal stress during plant growth. The aim of this work is to select PGPR that could be used in phytoremediation process. Twenty-nine rhizobacteria are examined for their ability to grow at increasing concentrations of NaCl, Zn, Pb, Cu, and Cd. The results showed that seventeen rhizobacteria displayed high salinity and metal tolerance up to 100 g L^-1 of NaCl, 5 mM of Cd, 9 mM of Pb, 10 mM of Zn, and 6 mM of Cu. Moreover, almost all tested bacteria maintained their PGP traits under 10% of NaCl and multi-metal stress. Based on seedling bioassay under metallic and salt stress, using Peganum harmala L. and Lactuca sativa L., beneficial effects of seed inoculation with bacterial consortia (Mesorhizobium tamadayense, Enterobacter xiangfangensis, Pseudomonas azotifigens, and Streptomyces caelestis) have been observed in terms of root and shoot elongation. Our results show that the stress-tolerant consortium used has a great potential to sustain plants establishment in heavily disturbed soils.

Microbe-assisted phytoremediation of environmental pollutants and energy recycling in sustainable agriculture

The perception of phytoremediation is efficiently utilized as an eco-friendly practice of green plants combating and cleaning up the stressed environment without harming it. The industrial revolution was followed by the green revolution which fulfilled the food demands of the growing population caused an increase in yield per unit area in crop production, but it also increased the use of synthetic fertilizers in agriculture. Globally, the intensive use of inorganic fertilizers in agriculture has led to serious health problems and irreversible environmental damage. Biofertilizers improve the growth of the plant and can be applied as an alternative to chemical/synthetic fertilizers. Cyanobacteria, bacteria, and fungi are known as some of the principal microbe groups used to produce biofertilizers that form symbiotic associations with plants. Microorganisms perform a key role in phosphate solubilization and mobilization, nitrogen fixation, nutrient management, biotic elicitors and probiotics, and pollution management (biodegradation agents), specifically bacteria which also help in atmospheric nitrogen fixation and are thus available for the growth of the plant. Management or biodegradation of hazardous chemical residues and heavy metals produced by a huge number of large-scale industries should be given primary importance to be transformed by various bacterial strains, fungi, algae. Currently, modern omics technologies such as metagenomic, transcriptomic, and proteomic are being used to develop strategies for studying the ecology of microorganisms, as well as their use in environmental monitoring and bioremediation. This review briefly discusses some of the major groups of microorganisms that can perform different functions responsible for plant health, crop production, phytoremediation and also focus on the omics techniques reportedly used in environmental monitoring to tackle the pollution load.

Evaluation of phytoremediation capability of French marigold (Tagetes patula) and African marigold (Tagetes erecta) under heavy metals contaminated soils

The pot experiment was conducted to explore the phytoremediation potential of two different marigold species grown in heavy metals contaminated red, black, alluvial, recent river clay, sewage irrigated, sewage sludge, and garden soil. Different soil types were treated uniformly with lead (20 mg Pb kg^-1 soil), cadmium (5 mg Cd kg^-1 soil), chromium (30 mg Cr kg^-1 soil) and nickel (10 mg Ni kg^-1 soil). Completely randomized design (CRD) was used with three replications. African marigold (Tagetes erecta) recorded ∼89.4% more dry matter yield over French marigold (Tagetes patula) when grown under metals treated soils. Both the marigold species were highly effective for removing Cd and Ni from contaminated soils (TF >1) however, Ni (TF ∼14.9) was more efficiently accumulated by T. patula and Cd (TF ∼12.1) by T. erecta. Higher biomass yield in T. erecta resulted higher accumulation of heavy metals (except Cr) compared to T. patula. Assessment of contamination factor (CF) and geo-accumulation index (I_geo) of heavy metals indicates that post-harvest soils had moderate to high degree of contamination by different metals, Cr being the highest. It may be concluded that T. erecta was more efficient in extracting heavy metals from different heavy metals contaminated soils.Novelty statement Contamination of land with heavy metals poses severe environmental threats. Physical and chemical remediation techniques are generally used for remediating metals contaminated sites. These methods are cost-intensive and therefore, commercially non-viable, besides being disruptive in nature and causing deterioration of soil. Alternatively, bio-remediation techniques are cost-effective and environment friendly. Among the various phytoremediation techniques, hyperaccumulator plants are most commonly used for the remediation of the contaminated sites. It has been found that different species of the same plant (marigold) differ in their ability to accumulate metals under various contaminated soils having different properties. Thus, this experiment provided an unique opportunity to investigate the effect of various soil properties on metal accumulation efficacy of marigold under metal-spiked soils. Marigold plants can grow rapidly by developing a robust root system which helps them to survive under contaminated soil environment. Thus, marigold being ornamental plant could be used to decontaminate polluted sites while providing ornamental value and may serve as a source of commercially valuable products extracting metals from biomass by way of incineration. However, meager information is available about the usage of various marigold species for phytoremediation of heavy metals under different metal-polluted soils. In the current experiment, we intend to evaluate the potential use of two different marigold species (Tagetes patula and Tagetes erecta) in remediating heavy metals under nine soils of different nature spiked with metals and assessing heavy metals pollution load indexes in these polluted soils.

Partial overlap of fungal communities associated with nettle and poplar roots when co-occurring at a trace metal contaminated site

Stinging nettle (Urtica dioica L.) raises growing interest in phytomanagement because it commonly grows under poplar Short Rotation Coppices (SRC) set up at trace-metal (TM) contaminated sites and provides high-quality herbaceous fibres. The mycobiome of this non-mycorhizal plant and its capacity to adapt to TM-contaminated environments remains unknown. This study aimed at characterizing the mycobiome associated with nettle and poplar roots co-occurring at a TM-contaminated site. Plant root barcoding using the fungi-specific ITS1F-ITS2 primers and Illumina MiSeq technology revealed that nettle and poplar had distinct root fungal communities. The nettle mycobiome was dominated by Pezizomycetes from known endophytic taxa and from the supposedly saprotrophic genus Kotlabaea (which was the most abundant). Several ectomycorrhizal fungi such as Inocybe (Agaricomycetes) and Tuber (Pezizomycetes) species were associated with the poplar roots. Most of the Pezizomycetes taxa were present in the highly TM-contaminated area whereas Agaricomycetes tended to be reduced. Despite being a known non-mycorrhizal plant, nettle was associated with a significant proportion of ectomycorrhizal OTU (9.7%), suggesting some connexions between the poplar and the nettle root mycobiomes. Finally, our study raised the interest in reconsidering the fungal networking beyond known mycorrhizal interactions.

Deciphering the dynamics of glomalin and heavy metals in soils contaminated with hazardous municipal solid wastes

Heavy metals (HMs) accumulation in the soils poses risks towards the environment and health. Glomalin related soil protein (GRSP) produced by arbuscular mycorrhizal fungi (AMF) has metal-sorption and soil aggregation properties and is critical in the survival of plants and AMF. For the first time, this study attempted to examine the GRSP mediated bio-stabilization of HMs in soils contaminated with municipal solid wastes (MSW). The content and interrelationship of GRSP and HMs, along with soil physicochemical properties were studied in 20 different soil samples from the dumping site. Higher amount of GRSP indicated potential bio-stabilization of HMs at some sites. GRSP exhibited weak positive correlation with essential (Zn, Cu) and toxic HMs (Cd, Ni). Cr and Mn were possibly sequestered in AMF structures and thus found to be negatively correlated with GRSP. The positive correlation observed between GRSP and soil nutrients like N, P and soil organic carbon (SOC) indicating potential of AMF-GRSP in sustaining soil health. Results revealed that AMF residing at contaminated sites produced higher amount of GRSP potentially to bio-stabilize the HMs, and reduce their bioavailability and also facilitate SOC sequestration.

Application of floating treatment wetlands for stormwater runoff: A critical review of the recent developments with emphasis on heavy metals and nutrient removal

Floating treatment wetlands (FTWs) are increasingly gaining popularity due to a set of valuable features like wastewater remediation under varied conditions, ecosystem quality preservation, landscape conservation, and aesthetic benefits. FTW is a phyto-technology in which macrophytes grow on a floating raft with their roots in permanent contact with water and remove pollutants via several physicochemical-biological processes. FTW is highly capable of overcoming technical and operational challenges that come way in stormwater treatment due to the erratic nature of hydrologic and input pollutant loads because this innovative buoyant hydroponic design can move up and down with fluctuating water levels in the stormwater pond and can treat highly variable flows. Plants and biofilms attached to the roots hanging beneath the floating mat play a pivotal role in FTWs. The present review encompasses the concept of FTWs, their structural designs, relevance in stormwater management, and mechanism of plant uptake for pollutant removal. The role of FTWs to remove heavy metals and nutrients is also critically analyzed. Understanding hydraulics and other parameters of FTW is vital to effective design. Hence, the role of vegetation coverage, vegetation type, sorption media, aeration frequency, and intensity, and plant density to enhance system efficiency is also highlighted. Due to their operational flexibility and environmentally friendly working with no additional burden on existing urban land use, FTWs entice broad international interest and offer a coherent solution for stormwater management. MAIN FINDINGS: The review delivers state-of-the-art analysis of the current understanding of hydraulics and other parameters of FTWs, and associated mechanisms to enhance the treatment efficiency of FTWs for nutrients and heavy metals removal.

Isolation and characterization of salt-tolerant bacteria with plant growth-promoting activities from saline agricultural fields of Haryana, India

Background

Soil salinity has been one of the biggest hurdles in achieving better crop yield and quality. Plant growth-promoting rhizobacteria (PGPR) are the symbiotic heterogeneous bacteria that play an important role in the recycling of plant nutrients through phytostimulation and phytoremediation. In this study, bacterial isolates were isolated from salt-polluted soil of Jhajjar and Panipat districts of Haryana, India. The potential salt-tolerant bacteria were screened for their PGPR activities such as phosphate solubilization, hydrogen cyanide (HCN), indole acetic acid (IAA) and ammonia production. The molecular characterization of potent isolates with salt tolerance and PGPR activity was done by 16S rDNA sequencing.

Results

Eighteen soil samples from saline soils of Haryana state were screened for salt-tolerant bacteria. The bacterial isolates were analyzed for salt tolerance ranging from 2 to 10%. Thirteen isolates were found salt tolerant at varied salt concentrations. Isolates HB6P2 and HB6J2 showed maximum tolerance to salts at 10% followed by HB4A1, HB4N3 and HB8P1. All the salt-tolerant bacterial isolates showed HCN production with maximum production by HB6J2. Phosphate solubilization was demonstrated by three isolates viz., HB4N3, HB6P2 and HB6J2. IAA production was maximum in HB4A1 (15.89) and HB6P2 (14.01) and least in HB4N3 (8.91). Ammonia production was maximum in HB6P2 (12.3) and least in HB8P1 (6.2). Three isolates HB6J2, HB8P1 and HB4N3 with significant salt tolerance, and PGPR ability were identified through sequencing of amplified 16SrRNA gene and were found to be Bacillus paramycoides, Bacillus amyloliquefaciens and Bacillus pumilus, respectively.

Conclusions

The salt-tolerant plant growth-promoting rhizobacteria (PGPR) isolated from saline soil can be used to overcome the detrimental effects of salt stress on plants, with beneficial effects of physiological functions of plants such as growth and yield, and overcome disease resistance. Therefore, application of microbial inoculants to alleviate stresses and enhance yield in plants could be a low cost and environmental friendly option for the management of saline soil for better crop productivity.

Supplementary Information

The online version contains supplementary material available at 10.1186/s43141-021-00186-3.

Plant-Microbiome Crosstalk: Dawning from Composition and Assembly of Microbial Community to Improvement of Disease Resilience in Plants

Plants host diverse but taxonomically structured communities of microorganisms, called microbiome, which colonize various parts of host plants. Plant-associated microbial communities have been shown to confer multiple beneficial advantages to their host plants, such as nutrient acquisition, growth promotion, pathogen resistance, and environmental stress tolerance. Systematic studies have provided new insights into the economically and ecologically important microbial communities as hubs of core microbiota and revealed their beneficial impacts on the host plants. Microbiome engineering, which can improve the functional capabilities of native microbial species under challenging agricultural ambiance, is an emerging biotechnological strategy to improve crop yield and resilience against variety of environmental constraints of both biotic and abiotic nature. This review highlights the importance of indigenous microbial communities in improving plant health under pathogen-induced stress. Moreover, the potential solutions leading towards commercialization of proficient bioformulations for sustainable and improved crop production are also described.

Arbuscular Mycorrhizal Fungi Increase Pb Uptake of Colonized and Non-Colonized Medicago truncatula Root and Deliver Extra Pb to Colonized Root Segment

Arbuscular mycorrhizal (AM) fungi establish symbiosis and improve the lead (Pb) tolerance of host plants. The AM plants accumulate more Pb in roots than their non-mycorrhizal counterparts. However, the direct and long-term impact of AM fungi on plant Pb uptake has been rarely reported. In this study, AM fungus (Rhizophagus irregularis) colonized and non-colonized roots of Medicago truncatula were separated by a split-root system, and their differences in responding to Pb application were compared. The shoot biomass accumulation and transpiration were increased after R. irregularis inoculation, whereas the biomass of both colonized and non-colonized roots was decreased. Lead application in the non-colonized root compartment increased the R. irregularis colonization rate and up-regulated the relative expressions of MtPT4 and MtBCP1 in the colonized root compartments. Rhizophagus irregularis inoculation increased Pb uptake in both colonized and non-colonized roots, and R. irregularis transferred Pb to the colonized root segment. The Pb transferred through the colonized root segment had low mobility and might be sequestrated and compartmented in the root by R. irregularis. The Pb uptake of roots might follow water flow, which is facilitated by MtPIP2. The quantification of Pb transfer via the mycorrhizal pathway and the involvement of MtPIP2 deserve further study.

Green remediation of toxic metals contaminated mining soil using bacterial consortium and Brassica juncea

Microorganism-assisted phytoremediation is being developed as an efficient green approach for management of toxic metals contaminated soils and mitigating the potential human health risk. The capability of plant growth promoting Actinobacteria (Streptomyces pactum Act12 - ACT) and Firmicutes (Bacillus subtilis and Bacillus licheniformis - BC) in mono- and co-applications (consortium) to improve soil properties and enhance phytoextraction of Cd, Cu, Pb, and Zn by Brassica juncea (L.) Czern. was studied here for the first time in both incubation and pot experiments. The predominant microbial taxa were Proteobacteria, Actinobacteria and Bacteroidetes, which are important lineages for maintaining soil ecological activities. The consortium improved the levels of alkaline phosphatase, β-D glucosidase, dehydrogenase, sucrase and urease (up to 33%) as compared to the control. The bacterial inoculum also triggered increases in plant fresh weight, pigments and antioxidants. The consortium application enhanced significantly the metals bioavailability (DTPA extractable) and mobilization (acid soluble fraction), relative to those in the unamended soil; therefore, significantly improved the metals uptake by roots and shoots. The phytoextraction indices indicated that B. juncea is an efficient accumulator of Cd and Zn. Overall, co-application of ACT and BC can be an effective solution for enhancing phytoremediation potential and thus reducing the potential human health risk from smelter-contaminated soil. Field studies may further credit the understanding of consortium interactions with soil and different plant systems in remediating multi-metal contaminated environments.

Efficiency of bacteria and bacterial assisted phytoremediation of heavy metals: An update

The aim of this review to address the plant-associated bacteria to enhance the phytoremediation efficiency of the heavy metals from polluted sites and it is also highlighted advances for the application in wastewater treatment. Plant-associated bacteria have potential to encourage the plant growth and resistance under stress conditions. Such bacteria could enhance plant growth by controlling growth hormone, nutrition security, producing siderophore, secondary metabolites, and improving the antioxidant enzymes system. This review also explores the concepts and applications of bacteria assisted phytoremediation, addressing aspects that affect phytoremediation and pathways for restoration. Significant review issues relating to production and application of bacteria for improvement of bioremediation were established and presented for possible future research. Bacteria assisted phytoremediation is cost-effective strategy and metal sequestration mechanism that hold high metal biosorption capacities. This also takes into consideration the current state of technology implementations and proposals for prospective clean-up studies.

Effects of the Combinations of Rhizobacteria, Mycorrhizae, and Seaweed, and Supplementary Irrigation on Growth and Yield in Wheat Cultivars

Wheat is a staple food consumed by the majority of people in the world and its production needs to be doubled to feed the growing population. On the other hand, global wheat productivity is greatly affected due to drought and low fertility of soil under arid and semi-arid regions. Application of supplementary irrigation and plant growth-promoting rhizobacteria (PGPR) has been suggested as sustainable measures to combat drought stress and to improve soil fertility and, hence, crop yield. This research was undertaken to study the effect of supplementary irrigation together with a combination of various PGPR on the growth and yield of two wheat cultivars, namely Sardari and Sirvan. The results of variance analysis (mean of squares) showed that the effect of irrigation, cultivar, and irrigation and biofertilizer and irrigation on height, spike length, seed/spike, and numbers of spikes/m², 1000-seed weight, and grain yield were significant at 1% probability level. The effect of cultivar and irrigation interactions showed that the highest grain yield was obtained in a treatment with two additional irrigations in Sirvan cultivar (5015.0 kg/ha) and Sardari (4838.9 kg/ha) as compared to the 3598 kg/ha and 3598.3 kg/h grain yield in Sirvan and Sardari cultivars with similar treatment, but without irrigation, i.e., dryland farming. Drought conditions significantly affected the wheat grain yield while supplementary irrigation resulted in 39.38% and 34.48% higher yields in Sirvan and Sardari cultivars.

Enhanced reduction of lead bioavailability in phosphate mining wasteland soil by a phosphate-solubilizing strain of Pseudomonas sp., LA, coupled with ryegrass (Lolium perenne L.) and sonchus (Sonchus oleraceus L.)

Due to ecologically unsustainable mining strategies, there remain large areas of phosphate mining wasteland contaminated with accumulated lead (Pb). In this study, a Pb-resistant phosphate-solubilizing strain of Pseudomonas sp., LA, isolated from phosphate mining wasteland, was coupled with two species of native plants, ryegrass (Lolium perenne L.) and sonchus (Sonchus oleraceus L.), for use in enhancing the reduction of bioavailable Pb in soil from a phosphate mining wasteland. The effect of PbCO₃ solubilization by Pseudomonas sp. strain LA was evaluated in solution culture. It was found that strain LA could attain the best solubilization effect on insoluble Pb when the PbCO₃ concentration was 1% (w/v). Pot experiments were carried out to investigate the potential of remediation by ryegrass and sonchus in phosphate mining wastelands with phosphate rock application and phosphate-solubilizing bacteria inoculation. Compared to the control group without strain LA inoculation, the biomass and length of ryegrass and sonchus were markedly increased, available P and Pb in roots increased by 22.2%-325% and 23.3%-368%, respectively, and available P and Pb in above-ground parts increased by 4.44%-388% and 1.67%-303%, respectively, whereas available Pb in soil decreased by 14.1%-27.3%. These results suggest that the combination of strain LA and plants is a bioremediation strategy with considerable potential and could help solve the Pb-contamination problem in phosphate mining wastelands.

Dark septate endophytes isolated from non-hyperaccumulator plants can increase phytoextraction of Cd and Zn by the hyperaccumulator Noccaea caerulescens

Dark septate endophytes (DSEs) can improve plant stress tolerance by promoting growth and affecting element accumulation. Due to its ability to accumulate high Cd, Zn, and Ni concentrations in its shoots, Noccaea caerulescens is considered a promising candidate for phytoextraction in the field. However, the ability of DSEs to improve trace element (TE) phytoextraction with N. caerulescens has not yet been studied. The aim of this study was therefore to determine the ability of five DSE strains, previously isolated from poplar roots collected at different TE-contaminated sites, to improve plant development, mineral nutrient status, and metal accumulation by N. caerulescens during a pot experiment using two soils differing in their level of TE contamination. Microscopic observations revealed that the tested DSE strains effectively colonised the roots of N. caerulescens. In the highly contaminated (HC) soil, a threefold increase in root biomass was found in plants inoculated with the Leptodontidium sp. Pr30 strain compared to that in the non-inoculated condition; however, the plant nutrient status was not affected. In contrast, the two strains Phialophora mustea Pr27 and Leptodontidium sp. Me07 had positive effects on the mineral nutrient status of plants without significantly modifying their biomass. Compared to non-inoculated plants cultivated on HC soil, Pr27- and Pr30-inoculated plants extracted more Zn (+ 30%) and Cd (+ 90%), respectively. In conclusion, we demonstrated that the responses of N. caerulescens to DSE inoculation ranged from neutral to beneficial and we identified two strains (i.e. Leptodontidium sp. (Pr30) and Phialophora mustea (Pr27)) isolated from poplar that appeared promising as they increased the amounts of Zn and Cd extracted by improving plant growth and/or TE accumulation by N. caerulescens. These results generate interest in further characterising the DSEs that naturally colonise N. caerulescens and testing their ability to improve phytoextraction.

Silencing MdGH3-2/12 in apple reduces cadmium resistance via the regulation of AM colonization

Arbuscular mycorrhizal fungi (AMF) can form a symbiotic relationship with most terrestrial plant roots, promote plant growth, and heavy metal (HM) tolerance and thus plays a crucial role in phytoremediation. However, research on the relationship between colonization level and HM tolerance is limited. In this study, apple (Malus domestica) Gretchen Hagen3 genes MdGH3-2/12 silencing plants were treated with four AMF and Cd combination treatments to determine AMF colonization levels, biomass, Cd accumulation, photosynthesis, fluorescence, reactive oxygen species (ROS) and antioxidant substance accumulation, and Cd uptake, transport and detoxification gene expression levels. Results indicate the greater sensitivity of transgenic plants under AMF inoculation and Cd treatment compared with wild type (WT) via lower AMF colonization levels, biomass accumulation, photosynthetic parameters, and the accumulation and clearance homeostasis of ROS, as well as lower detoxification expression levels and higher Cd uptake and transport expression levels. Our study essentially demonstrates that MdGH3-2/12 plays an important role in Cd stress tolerance by regulating AM colonization in apple.

Endophytic Bacillus altitudinis WR10 alleviates Cu toxicity in wheat by augmenting reactive oxygen species scavenging and phenylpropanoid biosynthesis

Soil copper (Cu) pollution severely stunts crops growth and limits sustainable agri-food production. Many microbes are widely used for remediation of polluted soil, including Cu pollution. In this study, the potential of an endophytic Bacillus altitudinis WR10 to protect wheat from Cu stress and the molecular mechanisms were investigated using hydroponic model. The Cu resistance assay showed B. altitudinis WR10 can resist up to 2 mM Cu and remove about 74% Cu in medium after 24 h of fermentation. Co-culture study demonstrated WR10 increased roots length and dry weight in wheat seedlings under 50 μM Cu. These results indicated that WR10 was a Cu-resistant strain and reduced Cu toxicity in wheat. Transcriptome data and biochemical tests of wheat roots indicated that WR10 alleviated Cu toxicity through enhancing peroxidases (PODs) gene expression and activity to remove excess hydrogen peroxide (H₂O₂) and down-regulating glutathione S-transferases (GSTs) to increase glutathione (GSH) level. Moreover, enrichment and pathway analysis indicated WR10 regulated the expression of genes involved in phenylpropanoid biosynthesis, which may improve phenolic acids accumulation for protecting plant cells from Cu toxicity. Overall, this study revealed that B. altitudinis WR10 alleviated Cu toxicity in wheat via augmenting reactive oxygen species scavenging and phenylpropanoid biosynthesis.

Phytoremediation: a sustainable environmental technology for heavy metals decontamination

Toxic metal contamination of soil is a major environmental hazard. Chemical methods for heavy metal's (HMs) decontamination such as heat treatment, electroremediation, soil replacement, precipitation and chemical leaching are generally very costly and not be applicable to agricultural lands. However, many strategies are being used to restore polluted environments. Among these, phytoremediation is a promising method based on the use of hyper-accumulator plant species that can tolerate high amounts of toxic HMs present in the environment/soil. Such a strategy uses green plants to remove, degrade, or detoxify toxic metals. Five types of phytoremediation technologies have often been employed for soil decontamination: phytostabilization, phytodegradation, rhizofiltration, phytoextraction and phytovolatilization. Traditional phytoremediation method presents some limitations regarding their applications at large scale, so the application of genetic engineering approaches such as transgenic transformation, nanoparticles addition and phytoremediation assisted with phytohormones, plant growth-promoting bacteria and AMF inoculation has been applied to ameliorate the efficacy of plants as candidates for HMs decontamination. In this review, aspects of HMs toxicity and their depollution procedures with focus on phytoremediation are discussed. Last, some recent innovative technologies for improving phytoremediation are highlighted.

Arbuscular mycorrhizal fungi-induced mitigation of heavy metal phytotoxicity in metal contaminated soils: A critical review

The heavy metal pollution is a worldwide problem and has received a serious concern for the ecosystem and human health. In the last decade, remediation of the agricultural polluted soil has attracted great attention. Phytoremediation is one of the technologies that effectively alleviate heavy metal toxicity, however, this technique is limited to many factors contributing to low plant growth rate and nature of metal toxicities. Arbuscular mycorrhizal fungi (AMF) assisted alleviation of heavy metal phytotoxicity is a cost-effective and environment-friendly strategy. AMF have a symbiotic relationship with the host plant. The bidirectional exchange of resources is a hallmark and also a functional necessity in mycorrhizal symbiosis. During the last few years, a significant progress in both physiological and molecular mechanisms regarding roles of AMF in the alleviation of heavy metals (HMs) toxicities in plants, acquisition of nutrients, and improving plant performance under toxic conditions of HMs has been well studied. This review summarized the current knowledge regarding AMF assisted remediation of heavy metals and some of the strategies used by mycorrhizal fungi to cope with stressful environments. Moreover, this review provides the information of both molecular and physiological responses of mycorrhizal plants as well as AMF to heavy metal stress which could be helpful for exploring new insight into the mechanisms of HMs remediation by utilizing AMF.

Restoring the plant productivity of heavy metal-contaminated soil using phosphate sludge, marble waste, and beneficial microorganisms

Assisted natural remediation (ANR) has been highlighted as a promising, less expensive, and environmentally friendly solution to remediate soil contaminated with heavy metals. We tested the effects of three amendments (10% compost, C; 5 or 15% phosphate sludge, PS5 and PS15; and 5 or 15% marble waste, MW5 and MW15) in combination with microorganism inoculation (rhizobacteria consortium alone, mycorrhizae alone, and the two in-combination) on alfalfa in contaminated soil. Plant concentrations of Zn, Cu, and Pb were measured, along with proline and malondialdehyde production. The microbiological and physicochemical properties of the mining soil were evaluated. Application of the amendments allowed germination and promoted growth. Inoculation with the rhizobacteria consortium and/or mycorrhizae stimulated plant growth. PS and MW stimulated the production of proline. Inoculation of alfalfa with the rhizobacteria-mycorrhizae mixture and the application of MW allowed the safe cultivation of the legume, as shown by the low concentrations of metals in plant shoots. Zn and Pb concentrations were below the limits recommended for animal grazing and accumulated essentially in roots. Soil analyses showed the positive effect of the amendments on the soil physicochemical properties. All treatments increased soil pH (around 7), total organic carbon, and assimilable phosphorus content. Notably, an important decrease in soluble heavy metals concentrations was observed. Overall, our findings revealed that the applied treatments reduced the risk of metal-polluted soils limiting plant growth. The ANR has great potential for success in the restoration of polymetallic and acidic mining soils using the interaction between alfalfa, microorganisms, and organo-mineral amendments.

Role of plant growth promoting rhizobacteria in the alleviation of lead toxicity to Pisum sativum L

Plant-microbe interaction is a significant tool to tackle heavy metals problem in the soil. A pot trial was conducted to evaluate the efficiency of lead tolerant rhizobacteria in improving pea growth under Pb stress. Lead sulfate (PbSO4) was used for spiking (250, 500, and 750 mg kg-1). Results indicated that inoculation with Pb-tolerant PGPR strain not only alleviated the harmful impacts of Pb on plant growth but also immobilized it in the soil. PGPR in the presence of Pb at concentrations of 0, 250, 500 and 750 mg kg-1, increased shoot and root lengths by 21, 15, 18% and 72, 80, 84%, respectively, than uninoculated control. Moreover, fresh biomass of shoots and roots were also increased by 51, 45, 35% and 57, 101, 139% respectively, at Pb concentrations of 250, 500 and 750 mg kg-1. In addition, PGPR inoculation also reduced Pb concentration in the roots and shoots by 57, 55, 49% and 70, 56 and 58% respectively, than uninoculated control. So, PGPR proved to be an efficient option for reducing Pb mobility and can be effectively used for its phytostabilization. Novelty statementLead (Pb) is highly noxious and second most toxic element in the nature having high persistence. It ranks 1st in the priority list of hazardous substances and causes adverse effects after its entry into the living system. So, its remediation is inevitable. Plant growth promoting rhizobacteria (PGPR) possess the potential to not only survive under stressed environments, but also promote plant growth on account of their different plant growth promoting mechanisms.Most researchers have worked on its bioaccumulation in plant body. This study however, used pea as a test crop and caused Pb phytostabilization and thereby, suppressed its entry in the above-ground plant parts.

Drought and Salinity Stress Responses and Microbe-Induced Tolerance in Plants

Drought and salinity are among the most important environmental factors that hampered agricultural productivity worldwide. Both stresses can induce several morphological, physiological, biochemical, and metabolic alterations through various mechanisms, eventually influencing plant growth, development, and productivity. The responses of plants to these stress conditions are highly complex and depend on other factors, such as the species and genotype, plant age and size, the rate of progression as well as the intensity and duration of the stresses. These factors have a strong effect on plant response and define whether mitigation processes related to acclimation will occur or not. In this review, we summarize how drought and salinity extensively affect plant growth in agriculture ecosystems. In particular, we focus on the morphological, physiological, biochemical, and metabolic responses of plants to these stresses. Moreover, we discuss mechanisms underlying plant-microbe interactions that confer abiotic stress tolerance.

Influence of plant beneficial Stenotrophomonas rhizophila strain CASB3 on the degradation of diuron-contaminated saline soil and improvement of Lactuca sativa growth

Diuron is one of the major hazardous pollutants which posses severe risk to the environment and human healthiness. On the other hand, salinity is the most severe environmental stressor that limits crop productivity. Therefore, it is required to address this co-existing abiotic stresses in agricultural soil. Plant growth-promoting rhizobacteria have gained an engaging role in the degradation of pesticides in agricultural soil. However, their role against the restoration of diuron-contaminated saline soil is still not known. Thus, in this study, diuron-degrading, salinity-tolerant Stenotrophomonas rhizophila strain CASB3 was isolated and characterized. Strain CASB3 showed important PGP traits under normal and diuron or salt stresses. Complete degradation of 10-50 mg L-1 diuron in the aqueous medium under normal and salinity stress conditions was achieved within 48-120 h and 48-192 h, respectively. A unique pathway for diuron biodegradation was proposed based on GC-MS analysis. In a greenhouse study, CASB3 inoculated into diuron-contaminated saline soil efficiently degraded diuron (50 mg kg-1) by 94% in 42 days and simultaneously resulted in an enhancement of root-shoot length (47.22-63.41%), fresh-dry biomass (136.36-156.66%), and photosynthetic pigments (36.93-92.28%) in Lactuca sativa plants. These results suggest the strain CASB3 could be used as a bioresource for the reclamation of diuron-contaminated saline soils.

Molecular biological methods in environmental engineering

Microbes are sensitive to environmental changes and can respond in a short time. Genomics, proteomics, transcriptomics, metabolomics, and multigroup association are used to characterize the composition, function, and metabolism of microorganisms, and to evaluate the environment according to the changes in microorganisms, which has important reference and guiding significance of environmental monitoring, management, and repair. In this paper, the application of molecular biological methods to study environmental microorganisms in the fields of wastewater treatment, pollution control, soil improvement, and environmental monitoring in 2019 is reviewed.

Arbuscular mycorrhiza and Aspergillus terreus inoculation along with compost amendment enhance the phytoremediation of Cr-rich technosol by Solanum lycopersicum under field conditions

Chromium (Cr) contamination is a potential threat to the agricultural soil. Arbuscular mycorrhizal (AM) fungi have potential to remediate the heavy metal polluted soils. It was hypothesized that Cr phytoremediation potentiality of AM fungi could be enhanced in combination with saprophytic filamentous fungi and soil amendment. Tomato plants were raised in Cr polluted technosol amended with compost, inoculated with mixed-culture of AM fungi and Aspergillus terreus. It was found that, triple treatment (soil amendment with compost along with AM fungi and A. terreus inoculation) enhanced biomass production (up to 315%), fruit setting (up to 49%), photosynthetic pigments (up to 214%) and carbohydrate content (up to 400%) whereas reduced the proline (up to 76.5%), catalase (up to 34.2%), peroxidase (up to 58.9%) and root membrane permeability (up to 74.2%). The effect of AM fungi with compost amendment was additive, while it was synergistic with A. terreus. AM fungi enhanced the extraction of Cr from the substrate, but retained in the mycorrhizal root, thereby reduced the translocation into shoot and in fruit, Cr translocation was undetectable. At the end of experiment Cr content in the substrate was significantly decreased (up to 37.9%). Soil amendment with compost along with AM fungi and A. terreus inoculation can be used for reclamation of Cr polluted soils at field scale.

An overview on heavy metal resistant microorganisms for simultaneous treatment of multiple chemical pollutants at co-contaminated sites, and their multipurpose application

Anthropogenic imbalance of chemical pollutants in environment raises serious threat to all life forms. Contaminated sites often possess multiple heavy metals and other types of pollutants. Elimination of chemical pollutants at co-contaminated sites is imperative for the safe ecosystem functions, and simultaneous removal approach is an attractive scheme for their remediation. Different conventional techniques have been applied as concomitant treatment solution but fall short at various parameters. In parallel, use of microorganisms offers an innovative, cost effective and ecofriendly approach for simultaneous treatment of various chemical pollutants. However, microbiostasis due to harmful effects of heavy metals or other contaminants is a serious bottleneck facing remediation practices in co-contaminated sites. But certain microorganisms have unique mechanisms to resist heavy metals, and can act on different noxious wastes. Considering this significant, my review provides information on different heavy metal resistant microorganisms for bioremediation of different chemical pollutants, and other assistance. In this favour, the integrated approach of simultaneous treatment of multiple heavy metals and other environmental contaminants using different heavy metal resistant microorganisms is summarized. Further, the discussion also intends toward the use of heavy metal resistant microorganisms associated with industrial and environmental applications, and healthcare. PREFACE: Simultaneous treatment of multiple chemical pollutants using microorganisms is relatively a new approach. Therefore, this subject was not well received for review before. Also, multipurpose application of heavy metal microorganisms has certainly not considered for review. In this regard, this review attempts to gather information on recent progress on studies on different heavy metal resistant microorganisms for their potential of treatment of co-contaminated sites, and multipurpose application.

Growing food in polluted soils: A review of risks and opportunities associated with combined phytoremediation and food production (CPFP)

Innumerable private households and small-scale producers currently operate on polluted soils. Phytoremediation is one of the most cost-effective remediation options but as a stand-alone technology, it is often not lucrative enough to make it appealing for farmers, especially in economically vulnerable regions. Economic incentives are crucial for remediation projects to materialise and synergies can be obtained by integrating phytoremediation with other profitable activities including food production. This review aims to synthesise state-of-the-art scientific data to provide a general understanding of opportunities and risks for sustainable remediation of agricultural soil by the use of combined phytoremediation and food production (CPFP). The results show that strategies based on CPFP may be appropriate options for most pollutants in virtually all climatic or socioeconomic contexts but a number of challenges need to be surpassed. The challenges include remediation-technological issues such as undeveloped post-harvest technology and inadequate soil governance. The need for remediation solutions for polluted fields is increasingly urgent since many farmers currently operate on polluted land and the scarcity of soil resources as the human population continuously increases will inevitably force more farmers to cultivate in contaminated areas. We conclude that, although large scale CPFP has not yet reached technological maturity, appropriate combinations of soil types, plant species/cultivars, and agronomic practices together with thorough monitoring of the pollutants' pathways can potentially allow for safe food production on polluted soil that restricts the transfer of a number of pollutants to the food chain while the soil pool of pollutants is gradually reduced.

The plant-growth promoting bacteria promote cadmium uptake by inducing a hormonal crosstalk and lateral root formation in a hyperaccumulator plant Sedum alfredii

Plant growth-promoting bacteria (PGPB) that inhabit hyperaccumulating plants assist cadmium (Cd) absorption, but the underlying mechanism has not been comprehensively studied. For this reason, we combined the fluorescence imaging, and transcriptomic and metabolomic methods in a Cd hyperaccumulator, Sedum alfredii, inoculated or not with PGPB Pseudomonas fluorescens. The results showed that the newly emerged lateral roots, that were heavily colonized by P. fluorescens, are the main entry for Cd influx in S. alfredii. Inoculation with P. fluorescens promoted a lateral root formation of its host plant, leading to a higher Cd phytoremediation efficiency. Furthermore, the plant transcriptome revealed that 146 plant hormone related genes were significantly up-regulated by the bacterial inoculation, with 119 of them showing a complex interaction, which suggests that a hormonal crosstalk participated root development. The targeted metabolomics analysis showed that P. fluorescens inoculation significantly increased indole acetic acid concentration and significantly decreased concentrations of abscisic acid, brassinolide, trans-zeatin, ethylene and jasmonic acid in S. alfredii roots, thereby inducing lateral root emergence. Altogether, our results highlight the importance of PGPB-induced lateral root formation for the increased Cd uptake in a hyperaccumulating plant.

Plant Microbiome Engineering: Expected Benefits for Improved Crop Growth and Resilience

Plant-associated microbiomes can boost plant growth or control pathogens. Altering the microbiome by inoculation with a consortium of plant growth-promoting rhizobacteria (PGPR) can enhance plant development and mitigate against pathogens as well as abiotic stresses. Manipulating the plant holobiont by microbiome engineering is an emerging biotechnological strategy to improve crop yields and resilience. Indirect approaches to microbiome engineering include the use of soil amendments or selective substrates, and direct approaches include inoculation with specific probiotic microbes, artificial microbial consortia, and microbiome breeding and transplantation. We highlight why and how microbiome services could be incorporated into traditional agricultural practices and the gaps in knowledge that must be answered before these approaches can be commercialized in field applications.

Integration of earthworms and arbuscular mycorrhizal fungi into phytoremediation of cadmium-contaminated soil by Solanum nigrum L

Arbuscular mycorrhizal fungi (AMF) and earthworms independently enhance plant growth, heavy metal (HM) tolerance, and HM uptake, thus they are potential key factors in phytoremediation. However, few studies have investigated their interactions in HM phytoextraction by hyperaccumulators. This study highlights the independent and interactive effects of earthworms and AMF on Solanum nigrum. Plants inoculated with either AMF or earthworms exhibited ameliorated growth via enhancement of productivity, metal tolerance, and phosphorus (P) acquisition. Co-inoculation with both had more pronounced effects on plant biomass and P acquisition in shoots, but not in roots, and in Cd-polluted soils it significantly promoted (P < 0.05) shoot biomass (20.7-134.6 %) and P content (20.4-112.0 %). AMF and earthworms increased Cd accumulation in plant tissues, but only AMF affected Cd partitioning between shoots and roots. Although AMF decreased root-to-shoot translocation of Cd at high Cd levels, this was counterbalanced by earthworms. Both AMF and its combination with earthworms enhanced Cd phytoavailability by altering Cd chemical fractions and decreasing pH. Co-inoculation increased Cd removal amounts up to 149.3 % in 120 mg kg^-1 Cd-spiked soils. Interactions between the two organisms were synergistic in Cd phytoextraction. Thus, earthworm-AMF-plant symbiosis potentially plays an essential role in phytoremediation of HM-polluted soils.

Bacterial Augmented Floating Treatment Wetlands for Efficient Treatment of Synthetic Textile Dye Wastewater

Floating treatment wetland (FTW) is an innovative, cost effective and environmentally friendly option for wastewater treatment. The dyes in textile wastewater degrade water quality and pose harmful effects to living organisms. In this study, FTWs, vegetated with Phragmites australis and augmented with specific bacteria, were used to treat dye-enriched synthetic effluent. Three different types of textile wastewater were synthesized by adding three different dyes in tap water separately. The FTWs were augmented with three pollutants degrading and plant growth promoting bacterial strains (i.e., Acinetobacter junii strain NT-15, Rhodococcus sp. strain NT-39, and Pseudomonas indoloxydans strain NT-38). The water samples were analyzed for pH, electrical conductivity (EC), total dissolved solid (TDS), total suspended solids (TSS), chemical oxygen demand (COD), biological oxygen demand (BOD), color, bacterial survival and heavy metals (Cr, Ni, Mn, Zn, Pb and Fe). The results indicated that the FTWs removed pollutants and color from the treated water; however, the inoculated bacteria in combination with plants further enhanced the remediation potential of floating wetlands. In FTWs with P. australis and augmented with bacterial inoculum, pH, EC, TDS, TSS, COD, BOD and color of dyes were significantly reduced as compared to only vegetated and non-vegetated floating treatment wetlands without bacterial inoculation. Similarly, the FTWs application successfully removed the heavy metal from the treated dye-enriched wastewater, predominately by FTWs inoculated with bacterial strains. The bacterial augmented vegetated FTWs, in the case of dye 1, reduced the concentration of Cu, Ni, Zn, Fe, Mn and Pb by 75%, 73.3%, 86.9%, 75%, 70% and 76.7%, respectively. Similarly, the bacterial inoculation to plants in the case of dye 2 achieved 77.5% (Cu), 73.3% (Ni), 83.3% (Zn), 77.5% (Fe), 66.7% (Mn) and 73.3% (Pb) removal rates. Likewise in the case of dye 3, which was treated with plants and inoculated bacteria, the metals removal rates were 77.5%, 73.3%, 89.7%, 81.0%, 70% and 65.5% for Cu, Ni, Zn, Fe, Mn and Pb, respectively. The inoculated bacteria showed persistence in water, in roots and in shoots of the inoculated plants. The bacteria also reduced the dye-induced toxicity and promoted plant growth for all three dyes. The overall results suggested that FTW could be a promising technology for the treatment of dye-enriched textile effluent. Further research is needed in this regard before making it commercially applicable.

Bacteria from native soil in combination with arbuscular mycorrhizal fungi augment wheat yield and biofortification

Plant growth promoting bacteria (PGPB) have been used to enhance crop productivity. The effect of native PGPB and arbuscular mycorrhizal (AM) fungi in combination on wheat yield, biofortification and soil enzymatic activity is a relatively unexplored area. Twenty seven bacterial isolates from three different soils were characterized for their plant growth promoting traits. A total of three native and five non-native bacteria were used with and without arbuscular mycorrhizal (AM) fungi in an open greenhouse pot experiment with two wheat varieties to evaluate their effect on wheat yield, nutrient uptake, and soil health parameters. Wheat plants subjected to native PGPB (CP4) (Bacillus subtilis) and AM fungi treatment gave the best results with reference to macronutrient (nitrogen and phosphorus), micronutrient (iron and zinc) content in wheat grains and yield-related parameters, including thousand grain weight, number of grains per spike and total tillers per plant in both wheat cultivars. Treatment with CP4 and CP4 plus AM fungi enhanced total chlorophyll in wheat leaves indicating higher photosynthetic activity. Significant improvement in soil health-related parameters, including soil organic matter and dehydrogenase activity, was observed. Significant correlation among grain yield-related parameters, nutrient enhancement, and soil health parameters was observed in PGPB and AM fungi treated plants, especially HD-3086. These results provide a roadmap for utilizing native PGPB and AM fungi for enhancing wheat production in Punjab state of India and exploring their utility in other parts of the country with different soil and environmental conditions.

Interactions of soil metals with glomalin-related soil protein as soil pollution bioindicators in mangrove wetland ecosystems

Through binding of mineral particles and elements, glomalin-related soil protein (GRSP) plays a critical role in sustaining terrestrial soil quality and contributes to the fate of elements from terrestrial to aquatic ecosystems. There is little knowledge, however, of the metal sequestration patterns of GRSP in both terrestrial and aquatic soils, and this limits progress in understanding how environmental conditions influence GRSP characteristics. Here, we employed microcosm experiments to determine the molecular composition of original GRSP derived from three arbuscular mycorrhizal fungi, Glomus intraradices, Glomus versiforme and Acaulospora laevis. To gain insight into the metal sequestration patterns of environmental GRSP, we investigated major subtropical and tropical mangrove wetlands in southern China. GRSP-bound metals were significantly and positively correlated with total metals, and the metal binding contributed to the metal sequestration of mangrove soils. Fourier-transform infrared spectroscopy results showed that original- and environmental GRSP fractions contained hydroxyl, carboxyl, amide and carbonyl functional groups, which enhanced metal binding. Environmental process had no effect on the type of functional groups of the GRSP, while it significantly changed the relative content of the functional groups. The infrared fingerprint analyses of original- and environmental GRSP revealed field-specific, however, no taxon-specific characteristics of GRSP. Biostatistical analysis of the GRSP molecular composition further revealed that the soil pollution sources regulated the ratios of functional group contents associated with hydrocarbons, proteins, polysaccharides and nucleic acids. By GRSP infrared fingerprints coupled with multivariate analyses, we developed a technique for source identification of heavy metal pollution, giving more reliable evidence about contributing sources.

Drought and Salinity Stress Responses and Microbe-Induced Tolerance in Plants

Drought and salinity are among the most important environmental factors that hampered agricultural productivity worldwide. Both stresses can induce several morphological, physiological, biochemical, and metabolic alterations through various mechanisms, eventually influencing plant growth, development, and productivity. The responses of plants to these stress conditions are highly complex and depend on other factors, such as the species and genotype, plant age and size, the rate of progression as well as the intensity and duration of the stresses. These factors have a strong effect on plant response and define whether mitigation processes related to acclimation will occur or not. In this review, we summarize how drought and salinity extensively affect plant growth in agriculture ecosystems. In particular, we focus on the morphological, physiological, biochemical, and metabolic responses of plants to these stresses. Moreover, we discuss mechanisms underlying plant-microbe interactions that confer abiotic stress tolerance.