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Larremore DB, Wilder B, Lester E, Shehata S, Burke JM, Hay JA, Milind T, Mina MJ, Parker R. Test sensitivity is secondary to frequency and turnaround time for COVID-19 surveillance. MEDRXIV : THE PREPRINT SERVER FOR HEALTH SCIENCES 2020:2020.06.22.20136309. [PMID: 32607516 PMCID: PMC7325181 DOI: 10.1101/2020.06.22.20136309] [Citation(s) in RCA: 150] [Impact Index Per Article: 37.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
The COVID-19 pandemic has created a public health crisis. Because SARS-CoV-2 can spread from individuals with pre-symptomatic, symptomatic, and asymptomatic infections, the re-opening of societies and the control of virus spread will be facilitated by robust surveillance, for which virus testing will often be central. After infection, individuals undergo a period of incubation during which viral titers are usually too low to detect, followed by an exponential viral growth, leading to a peak viral load and infectiousness, and ending with declining viral levels and clearance. Given the pattern of viral load kinetics, we model surveillance effectiveness considering test sensitivities, frequency, and sample-to-answer reporting time. These results demonstrate that effective surveillance depends largely on frequency of testing and the speed of reporting, and is only marginally improved by high test sensitivity. We therefore conclude that surveillance should prioritize accessibility, frequency, and sample-to-answer time; analytical limits of detection should be secondary.
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Affiliation(s)
- Daniel B. Larremore
- Department of Computer Science, University of Colorado Boulder
- BioFrontiers Institute, University of Colorado at Boulder
| | - Bryan Wilder
- Center for Research on Computation & Society, Harvard John A Paulson School of Engineering and Applied Sciences, Harvard University
| | - Evan Lester
- Medical Scientist Training Program, University of Colorado Anschutz Medical Campus
- Department of Biochemistry, University of Colorado Boulder
| | - Soraya Shehata
- Department of Molecular, Cellular and Developmental Biology, University of Colorado
- Medical Scientist Training Program, University of Colorado Anschutz Medical Campus
| | - James M. Burke
- Department of Biochemistry, University of Colorado Boulder
| | - James A. Hay
- Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard T.H. Chan School of Public Health
- Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health
| | - Tambe Milind
- Center for Research on Computation & Society, Harvard John A Paulson School of Engineering and Applied Sciences, Harvard University
| | - Michael J. Mina
- Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard T.H. Chan School of Public Health
- Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health
- Department of Pathology, Brigham and Women’s Hospital, Harvard Medical School
| | - Roy Parker
- BioFrontiers Institute, University of Colorado at Boulder
- Department of Molecular, Cellular and Developmental Biology, University of Colorado
- Department of Biochemistry, University of Colorado Boulder
- Howard Hughes Medical Institute
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52
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Nardone M, Cordone A, Petti S. Occupational COVID-19 risk to dental staff working in a public dental unit in the outbreak epicenter. Oral Dis 2020; 28 Suppl 1:878-890. [PMID: 32881190 DOI: 10.1111/odi.13632] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2020] [Revised: 08/14/2020] [Accepted: 08/27/2020] [Indexed: 12/15/2022]
Abstract
OBJECTIVE The management of the COVID-19 outbreak occurred in Lombardy (Italy) implied that non-COVID-19 health care was remodeled, limiting adequate resources in non-hospital public dental healthcare settings. This situation offered the opportunity to investigate the occupational COVID-19 risk to dental staff in public non-hospital dental units. METHODS An infection control protocol was designed for dental health care in the Territorial Health and Social Services Authority (ASST) "Melegnano and Martesana" (Milan). Since specific guidance from central authorities was lacking, information was gathered from international public health organizations. The probability to visit asymptomatic COVID-19-infected patients was estimated, and the occupational risk to dental staff was calculated. RESULTS The probability to visit asymptomatic patients passed from 1.2% (95% confidence interval -95 CI, 0.6%-2.5%) in the first period (20 February-15 March 2020) to 11.1% (95 CI, 5.8%-23.6%) in the second period (16 March-30 April). Dentists and dental assistants did not develop COVID-19, while one nurse did, the nature of her occupational risk was unclear, as nurses provided prevalently non-dental health care. The probabilities of developing COVID-19 per worked hour per person excluding and including this uncertain situation were 0.0% (95 CI, 0.0%-3.2%) and 0.9% (95 CI, 0.1%-4.7%). CONCLUSION Relatively simple infection control procedures were enough to control occupational COVID-19 risk during the outbreak.
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Affiliation(s)
- Michele Nardone
- Territorial Health and Social Services Authority (ASST) "Melegnano and Martesana", Milan, Italy
| | - Angelo Cordone
- Territorial Health and Social Services Authority (ASST) "Melegnano and Martesana", Milan, Italy
| | - Stefano Petti
- Department of Public Health and Infectious Diseases, Sapienza University, Rome, Italy
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Büchner N, Woehrle H, Dellweg D, Wiater A, Young P, Hein H, Randerath W. [Management of Diagnostic Procedures and Treatment of Sleep Related Breathing Disorders in the Context of the Coronavirus Pandemic - German Respiratory Society (DGP), German Sleep Society (DGSM)]. Pneumologie 2020; 74:571-581. [PMID: 32521554 PMCID: PMC7516352 DOI: 10.1055/a-1184-8442] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- N Büchner
- Medizinische Klinik I (Pneumologie, Schlaf- und Beatmungsmedizin), Helios Klinikum Duisburg GmbH, Duisburg
| | | | - D Dellweg
- Fachkrankenhaus Kloster Grafschaft GmbH, Akademisches Lehrkrankenhaus der Philipps-Universität Marburg, Schmallenberg Grafschaft
| | - A Wiater
- Deutsche Gesellschaft für Schlafforschung und Schlafmedizin, Schwalmstadt-Treysa
| | - P Young
- Medical Park, Neurologische Klinik Reithofpark, Bad Feilnbach
| | - H Hein
- Praxis und Schlaflabor für Innere Medizin, Pneumologie, Allergologie, Schlafmedizin, Reinbek
| | - W Randerath
- Klinik für Pneumologie, Krankenhaus Bethanien, Solingen
- Institut für Pneumologie an der Universität zu Köln, Köln
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Capano G. Policy design and state capacity in the COVID-19 emergency in Italy: if you are not prepared for the (un)expected, you can be only what you already are. POLICY & SOCIETY 2020; 39:326-344. [PMID: 35039724 PMCID: PMC8754691 DOI: 10.1080/14494035.2020.1783790] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
Italy was the first large epicentre of the COVID-19 pandemic in the Western world. Since the country has not had any serious experience with this kind of disease in recent decades, its response has been indicative of a first reaction to an (un)known and (un)expected event. At the same time, the Italian experience is an emblematic case of how a lack of specific preparedness measures drives a country to deal with this kind of crisis through a process in which the existing characteristics of the policy and political system, with all their pros and cons, prevail. This means that the existing country characteristics that affects policy design, state capacity, institutional arrangements and political games forge the process and content of the response. Based on this observation, this paper analyses the policy dynamics of the first four months of management of the COVID-19 outbreak in Italy, focusing on how the health and economic responses were designed and implemented.
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SARS-CoV-2 and cancer: Are they really partners in crime? Cancer Treat Rev 2020; 89:102068. [PMID: 32731090 PMCID: PMC7351667 DOI: 10.1016/j.ctrv.2020.102068] [Citation(s) in RCA: 56] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2020] [Revised: 06/29/2020] [Accepted: 07/01/2020] [Indexed: 12/15/2022]
Abstract
The outbreak of the SARS-CoV-2 pandemic has overwhelmed health care systems in many countries. The clinical presentation of the SARS-CoV-2 varies between a subclinical or flu-like syndrome to that of severe pneumonia with multi-organ failure and death. Initial reports have suggested that cancer patients may have a higher susceptibility to get infected by the SARS-CoV-2 virus but current evidence remains poor as it is biased by important confounders. Patients with ongoing or recent cancer treatment for advanced active disease, metastatic solid tumors and hematological malignancies are at higher risk of developing severe COVID-19 respiratory disease that requires hospitalization and have a poorer disease outcome compared to individuals without cancer. However it is not clear whether these are independent risk factors, or mainly driven by male gender, age, obesity, performance status, uncontrolled diabetes, cardiovascular disease and various other medical conditions. These often have a greater influence on the probability to die due to SARS-CoV-2 then cancer. Delayed diagnosis and suboptimal cancer management due to the pandemic results in disease upstaging and has considerable impact cancer on specific death rates. Surgery during the peak of the pandemic seems to increase mortality, but there is no convincing evidence that adjuvant systemic cancer therapy and radiotherapy are contraindicated, implicating that cancer treatment can be provided safely after individual risk/benefit assessment and some adaptive measures. Underlying immunosuppression, elevated cytokine levels, altered expression of the angiotensin converting enzyme (ACE-2) and TMPRSS2, and a prothrombotic status may fuel the effects of a SARS-CoV-2 in some cancer patients, but have the potential to be used as biomarkers for severe disease and therapeutic targets. The rapidly expanding literature on COVID-19 should be interpreted with care as it is often hampered by methodological and statistical flaws.
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Gringeri E, Gambato M, Furlanetto A, Ballo M, Nieddu E, Cillo U. Unchanged surgical management of patients with Cholangiocarcinoma during the COVID-19 pandemic. Dig Liver Dis 2020; 52:944-945. [PMID: 32646733 PMCID: PMC7336928 DOI: 10.1016/j.dld.2020.06.033] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/17/2020] [Revised: 06/19/2020] [Accepted: 06/21/2020] [Indexed: 12/11/2022]
Affiliation(s)
- Enrico Gringeri
- Hepatobiliary Surgery and Liver Transplantation, Padua University Hospital, 35100, Padua, Italy.
| | - Martina Gambato
- Multivisceral Transplant Unit and Gastroenterology, Padua University Hospital, 35100, Padua, Italy
| | - Alessandro Furlanetto
- Hepatobiliary Surgery and Liver Transplantation, Padua University Hospital, 35100, Padua, Italy
| | - Mattia Ballo
- Hepatobiliary Surgery and Liver Transplantation, Padua University Hospital, 35100, Padua, Italy
| | - Eleonora Nieddu
- Hepatobiliary Surgery and Liver Transplantation, Padua University Hospital, 35100, Padua, Italy
| | - Umberto Cillo
- Hepatobiliary Surgery and Liver Transplantation, Padua University Hospital, 35100, Padua, Italy
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Appa A, Takahashi S, Rodriguez-Barraquer I, Chamie G, Sawyer A, Consortium CLIAHUB, Duarte E, Hakim J, Turcios K, Vinden J, Janson O, Manglik A, Peluso MJ, Deeks SG, Henrich TJ, Torres L, Rodgers M, Hackett J, Chiu C, Havlir D, Greenhouse B. Universal PCR and antibody testing demonstrate little to no transmission of SARS-CoV-2 in a rural community. MEDRXIV : THE PREPRINT SERVER FOR HEALTH SCIENCES 2020:2020.08.15.20175786. [PMID: 32839781 PMCID: PMC7444294 DOI: 10.1101/2020.08.15.20175786] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
BACKGROUND The absence of systematic surveillance for SARS-CoV-2 has curtailed accurate appraisal of transmission intensity. Our objective was to perform case detection of an entire rural community to quantify SARS-CoV-2 transmission using PCR and antibody testing. METHODS We conducted a cross-sectional survey of the prevalence and cumulative incidence of SARS-CoV-2 infection in the rural town of Bolinas, California (population 1,620), four weeks following shelter-in-place orders. Residents and county essential workers were tested between April 20th-24th, 2020. Prevalence by PCR and seroprevalence combining data from two forms of antibody testing were performed in parallel (Abbott ARCHITECT IgG to nucleocapsid protein and in-house IgG ELISA to the receptor binding domain). RESULTS Of 1,891 participants, 1,312 were confirmed Bolinas residents (>80% community ascertainment). Zero participants were PCR positive. Assuming 80% sensitivity, it would have been unlikely to observe these results (p<0.05) if there were >3 active infections in the community. Based on antibody results, estimated prevalence of prior infection was 0.16% (95% CrI: 0.02%, 0.46%). Seroprevalence estimates using only one of the two tests would have been higher, with greater uncertainty. The positive predictive value (PPV) of a positive result on both tests was 99.11% (95% CrI: 95.75%, 99.94%), compared to PPV 44.19%-63.32% (95% CrI range 3.25%-98.64%) if only one test was utilized. CONCLUSIONS Four weeks following shelter-in-place, active and prior SARS-CoV-2 infection in a rural Northern California community was extremely rare. In this low prevalence setting, use of two antibody tests increased the PPV and precision of seroprevalence estimates.
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Affiliation(s)
- Ayesha Appa
- University Of California San Francisco, San Francisco, CA, USA
| | - Saki Takahashi
- University Of California San Francisco, San Francisco, CA, USA
| | | | - Gabriel Chamie
- University Of California San Francisco, San Francisco, CA, USA
| | - Aenor Sawyer
- University Of California San Francisco, San Francisco, CA, USA
| | - CLIAHUB Consortium
- University Of California San Francisco, San Francisco, CA, USA
- Chan Zuckerberg Biohub, San Francisco, CA, USA
| | - Elias Duarte
- University Of California San Francisco, San Francisco, CA, USA
| | - Jill Hakim
- University Of California San Francisco, San Francisco, CA, USA
| | | | - Joanna Vinden
- University of California Berkeley, Berkeley, CA, USA
| | - Owen Janson
- University Of California San Francisco, San Francisco, CA, USA
| | - Aashish Manglik
- University Of California San Francisco, San Francisco, CA, USA
| | | | - Steven G. Deeks
- University Of California San Francisco, San Francisco, CA, USA
| | | | - Leonel Torres
- University Of California San Francisco, San Francisco, CA, USA
| | | | | | - Charles Chiu
- University Of California San Francisco, San Francisco, CA, USA
| | - Diane Havlir
- University Of California San Francisco, San Francisco, CA, USA
| | - Bryan Greenhouse
- University Of California San Francisco, San Francisco, CA, USA
- Chan Zuckerberg Biohub, San Francisco, CA, USA
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Wood J, Datta D, Hudson BL, Co K, Tepner S, Hardwick E, John CC. Prevalence of Asymptomatic SARS-CoV-2 Infection in Children and Adults in Marion County, Indiana. Cureus 2020; 12:e9794. [PMID: 32821637 PMCID: PMC7431292 DOI: 10.7759/cureus.9794] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2020] [Accepted: 08/16/2020] [Indexed: 11/05/2022] Open
Abstract
BACKGROUND AND OBJECTIVES Two community studies outside the US showed asymptomatic infection with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in adults, but not in children <10 years of age. In this study, we assessed the prevalence of asymptomatic SARS-CoV-2 infection in children and adults in Marion County, Indiana. METHODS Individuals living in Marion County with no symptoms of coronavirus 2019 disease (COVID-19) within seven days of enrollment were eligible for this cross-sectional household study. Study kits were delivered to the participant's residence for self-swabbing, picked up by the study team, and tested by polymerase chain reaction (PCR) for SAR-CoV-2 infection. RESULTS Five hundred eleven nasal swabs were collected from 119 children and 392 adults ≥18 years of age. One participant (seven years of age) tested positive, for an overall study prevalence of 0.2% (95% CI 0, 0.6%). The participant had no known contact with a person with SARS-CoV-2 infection, and five family members tested negative for infection. The child and family members all tested negative for infection 10 and 20 days after the first test, and none developed symptoms of COVID-19 for 20 days after testing. CONCLUSIONS Asymptomatic SARS-CoV-2 infection can occur in children <10 years with no known COVID-19 exposure. Large cohort studies should be conducted to determine prevalence of asymptomatic infection and risk of transmission from asymptomatic infection in children and adults over time.
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Affiliation(s)
- James Wood
- Pediatric Infectious Diseases, Indiana University School of Medicine, Indianapolis, USA
| | - Dibyadyuti Datta
- Pediatrics, Indiana University School of Medicine, Indianapolis, USA
| | - Brenda L Hudson
- Indiana Clinical and Translational Sciences Institute, Indiana University School of Medicine, Indianapolis, USA
| | - Katrina Co
- Pediatrics, Indiana University School of Medicine, Indianapolis, USA
| | - Sarah Tepner
- Pediatrics, Indiana University School of Medicine, Indianapolis, USA
| | - Emily Hardwick
- Indiana Clinical and Translational Sciences Institute, Indiana University School of Medicine, Indianapolis, USA
| | - Chandy C John
- Pediatrics, Indiana University School of Medicine, Indianapolis, USA
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Byrne AW, McEvoy D, Collins AB, Hunt K, Casey M, Barber A, Butler F, Griffin J, Lane EA, McAloon C, O'Brien K, Wall P, Walsh KA, More SJ. Inferred duration of infectious period of SARS-CoV-2: rapid scoping review and analysis of available evidence for asymptomatic and symptomatic COVID-19 cases. BMJ Open 2020; 10:e039856. [PMID: 32759252 DOI: 10.1101/2020.04.25.20079889] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 05/26/2023] Open
Abstract
OBJECTIVES Our objective was to review the literature on the inferred duration of the infectious period of COVID-19, caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus, and provide an overview of the variation depending on the methodological approach. DESIGN Rapid scoping review. Literature review with fixed search terms, up to 1 April 2020. Central tendency and variation of the parameter estimates for infectious period in (A) asymptomatic and (B) symptomatic cases from (1) virological studies (repeated testing), (2) tracing studies and (3) modelling studies were gathered. Narrative review of viral dynamics. INFORMATION SOURCES Search strategies developed and the following searched: PubMed, Google Scholar, MedRxiv and BioRxiv. Additionally, the Health Information Quality Authority (Ireland) viral load synthesis was used, which screened literature from PubMed, Embase, ScienceDirect, NHS evidence, Cochrane, medRxiv and bioRxiv, and HRB open databases. RESULTS There was substantial variation in the estimates, and how infectious period was inferred. One study provided approximate median infectious period for asymptomatic cases of 6.5-9.5 days. Median presymptomatic infectious period across studies varied over <1-4 days. Estimated mean time from symptom onset to two negative RT-PCR tests was 13.4 days (95% CI 10.9 to 15.8) but was shorter when studies included children or less severe cases. Estimated mean duration from symptom onset to hospital discharge or death (potential maximal infectious period) was 18.1 days (95% CI 15.1 to 21.0); time to discharge was on average 4 days shorter than time to death. Viral dynamic data and model infectious parameters were often shorter than repeated diagnostic data. CONCLUSIONS There are limitations of inferring infectiousness from repeated diagnosis, viral loads and viral replication data alone and also potential patient recall bias relevant to estimating exposure and symptom onset times. Despite this, available data provide a preliminary evidence base to inform models of central tendency for key parameters and variation for exploring parameter space and sensitivity analysis.
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Affiliation(s)
- Andrew William Byrne
- One-Health Scientific Support Unit, Government of Ireland Department of Agriculture Food and the Marine, Dublin, Ireland
| | - David McEvoy
- School of Public Health, Physiotherapy and Sports Science, University College Dublin, Dublin, Ireland
| | - Aine B Collins
- Centre for Veterinary Epidemiology and Risk Analysis, School of Veterinary Medicine, University College Dublin, Dublin, Ireland
- Government of Ireland Department of Agriculture Food and the Marine, Dublin, Ireland
| | - Kevin Hunt
- Centre for Food Safety, School of Biosystems and Food Engineering, University College Dublin, Dublin, Ireland
| | - Miriam Casey
- Centre for Veterinary Epidemiology and Risk Analysis, School of Veterinary Medicine, University College Dublin, Dublin, Ireland
| | - Ann Barber
- Centre for Veterinary Epidemiology and Risk Analysis, School of Veterinary Medicine, University College Dublin, Dublin, Ireland
| | - Francis Butler
- Centre for Food Safety, School of Biosystems and Food Engineering, University College Dublin, Dublin, Ireland
| | - John Griffin
- Government of Ireland Department of Agriculture Food and the Marine, Dublin, Ireland
| | - Elizabeth A Lane
- Centre for Veterinary Epidemiology and Risk Analysis, School of Veterinary Medicine, University College Dublin, Dublin, Ireland
- Government of Ireland Department of Agriculture Food and the Marine, Dublin, Ireland
| | - Conor McAloon
- School of Veterinary Medicine, University College Dublin, Dublin, Ireland
| | - Kirsty O'Brien
- Health Information and Quality Authority, Cork, Munster, Ireland
| | - Patrick Wall
- Department of Public Health, School of Public Health, Physiotherapy and Sports Science, University College Dublin, Dublin, Ireland
| | - Kieran A Walsh
- Health Information and Quality Authority, Cork, Munster, Ireland
| | - Simon J More
- Centre for Veterinary Epidemiology and Risk Analysis, School of Veterinary Medicine, University College Dublin, Dublin, Ireland
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Byrne AW, McEvoy D, Collins AB, Hunt K, Casey M, Barber A, Butler F, Griffin J, Lane EA, McAloon C, O'Brien K, Wall P, Walsh KA, More SJ. Inferred duration of infectious period of SARS-CoV-2: rapid scoping review and analysis of available evidence for asymptomatic and symptomatic COVID-19 cases. BMJ Open 2020; 10:e039856. [PMID: 32759252 PMCID: PMC7409948 DOI: 10.1136/bmjopen-2020-039856] [Citation(s) in RCA: 202] [Impact Index Per Article: 50.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/30/2020] [Revised: 07/06/2020] [Accepted: 07/10/2020] [Indexed: 12/13/2022] Open
Abstract
OBJECTIVES Our objective was to review the literature on the inferred duration of the infectious period of COVID-19, caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus, and provide an overview of the variation depending on the methodological approach. DESIGN Rapid scoping review. Literature review with fixed search terms, up to 1 April 2020. Central tendency and variation of the parameter estimates for infectious period in (A) asymptomatic and (B) symptomatic cases from (1) virological studies (repeated testing), (2) tracing studies and (3) modelling studies were gathered. Narrative review of viral dynamics. INFORMATION SOURCES Search strategies developed and the following searched: PubMed, Google Scholar, MedRxiv and BioRxiv. Additionally, the Health Information Quality Authority (Ireland) viral load synthesis was used, which screened literature from PubMed, Embase, ScienceDirect, NHS evidence, Cochrane, medRxiv and bioRxiv, and HRB open databases. RESULTS There was substantial variation in the estimates, and how infectious period was inferred. One study provided approximate median infectious period for asymptomatic cases of 6.5-9.5 days. Median presymptomatic infectious period across studies varied over <1-4 days. Estimated mean time from symptom onset to two negative RT-PCR tests was 13.4 days (95% CI 10.9 to 15.8) but was shorter when studies included children or less severe cases. Estimated mean duration from symptom onset to hospital discharge or death (potential maximal infectious period) was 18.1 days (95% CI 15.1 to 21.0); time to discharge was on average 4 days shorter than time to death. Viral dynamic data and model infectious parameters were often shorter than repeated diagnostic data. CONCLUSIONS There are limitations of inferring infectiousness from repeated diagnosis, viral loads and viral replication data alone and also potential patient recall bias relevant to estimating exposure and symptom onset times. Despite this, available data provide a preliminary evidence base to inform models of central tendency for key parameters and variation for exploring parameter space and sensitivity analysis.
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Affiliation(s)
- Andrew William Byrne
- One-Health Scientific Support Unit, Government of Ireland Department of Agriculture Food and the Marine, Dublin, Ireland
| | - David McEvoy
- School of Public Health, Physiotherapy and Sports Science, University College Dublin, Dublin, Ireland
| | - Aine B Collins
- Centre for Veterinary Epidemiology and Risk Analysis, School of Veterinary Medicine, University College Dublin, Dublin, Ireland
- Government of Ireland Department of Agriculture Food and the Marine, Dublin, Ireland
| | - Kevin Hunt
- Centre for Food Safety, School of Biosystems and Food Engineering, University College Dublin, Dublin, Ireland
| | - Miriam Casey
- Centre for Veterinary Epidemiology and Risk Analysis, School of Veterinary Medicine, University College Dublin, Dublin, Ireland
| | - Ann Barber
- Centre for Veterinary Epidemiology and Risk Analysis, School of Veterinary Medicine, University College Dublin, Dublin, Ireland
| | - Francis Butler
- Centre for Food Safety, School of Biosystems and Food Engineering, University College Dublin, Dublin, Ireland
| | - John Griffin
- Government of Ireland Department of Agriculture Food and the Marine, Dublin, Ireland
| | - Elizabeth A Lane
- Centre for Veterinary Epidemiology and Risk Analysis, School of Veterinary Medicine, University College Dublin, Dublin, Ireland
- Government of Ireland Department of Agriculture Food and the Marine, Dublin, Ireland
| | - Conor McAloon
- School of Veterinary Medicine, University College Dublin, Dublin, Ireland
| | - Kirsty O'Brien
- Health Information and Quality Authority, Cork, Munster, Ireland
| | - Patrick Wall
- Department of Public Health, School of Public Health, Physiotherapy and Sports Science, University College Dublin, Dublin, Ireland
| | - Kieran A Walsh
- Health Information and Quality Authority, Cork, Munster, Ireland
| | - Simon J More
- Centre for Veterinary Epidemiology and Risk Analysis, School of Veterinary Medicine, University College Dublin, Dublin, Ireland
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Salzberger B, Buder F, Lampl B, Ehrenstein B, Hitzenbichler F, Hanses F. [Epidemiology of SARS-CoV-2 infection and COVID-19]. Internist (Berl) 2020; 61:782-788. [PMID: 32548652 PMCID: PMC7296906 DOI: 10.1007/s00108-020-00834-9] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a new β‑Coronavirus that was first detected in 2019 in Wuhan, China. In the ensuing months it has been transmitted worldwide. Here the authors present the current knowledge on the epidemiology of this virus. SARS-CoV‑2 replicates mainly in the upper and lower respiratory tract and is primarily transmitted by droplets from asymptomatic and symptomatic infected subjects. The estimate for the basic reproduction number (R) is currently between 2 and 3, while the incubation period is 6 (median, range 2-14) days. Although most infections are uncomplicated, 5-10% of cases develop pneumonia, which can lead to hospitalization, respiratory failure and multiorgan failure. Risk factors for a complicated disease course include age, hypertension, chronic cardiovascular and pulmonary disease and immunodeficiency. The overall case fatality rate is 1.4%, with the rate rising in the sixth decade of life. Nosocomial and infections in medical personnel have been reported. Drastic reductions in social contact have been implemented in many countries with outbreaks of SARS-CoV‑2, leading to rapid reductions in R. Which of the measures have been effective is still unknown.
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Affiliation(s)
- B Salzberger
- Abt. Krankenhaushygiene und Infektiologie, Universitätsklinikum Regensburg, Franz-Josef-Strauß-Allee 11, 93053, Regensburg, Deutschland.
| | - F Buder
- Abt. Krankenhaushygiene und Infektiologie, Universitätsklinikum Regensburg, Franz-Josef-Strauß-Allee 11, 93053, Regensburg, Deutschland
| | - B Lampl
- Sachgebiet Infektionsschutz und Hygiene, Gesundheitsamt Regensburg, Regensburg, Deutschland
| | - B Ehrenstein
- Klinik und Poliklinik für Rheumatologie und Klinische Immunologie, Fachklinikum Bad Abbach, Bad Abbach, Deutschland
| | - F Hitzenbichler
- Abt. Krankenhaushygiene und Infektiologie, Universitätsklinikum Regensburg, Franz-Josef-Strauß-Allee 11, 93053, Regensburg, Deutschland
| | - F Hanses
- Abt. Krankenhaushygiene und Infektiologie, Universitätsklinikum Regensburg, Franz-Josef-Strauß-Allee 11, 93053, Regensburg, Deutschland
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Goldstein E, Lipsitch M, Cevik M. On the effect of age on the transmission of SARS-CoV-2 in households, schools and the community. MEDRXIV : THE PREPRINT SERVER FOR HEALTH SCIENCES 2020:2020.07.19.20157362. [PMID: 32743609 PMCID: PMC7386533 DOI: 10.1101/2020.07.19.20157362] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
BACKGROUND There is limited information on the effect of age on the transmission of SARS-CoV-2 infection in different settings, including primary, secondary and high schools, households, and the whole community. We undertook a literature review of published studies/data on detection of SARS-CoV-2 infection in contacts of COVID-19 cases, as well as serological studies, and studies of infections in the school setting to examine those issues. RESULTS Our literature review presents evidence for significantly lower susceptibility to infection for children aged under 10 years compared to adults given the same exposure, for elevated susceptibility to infection in adults aged over 60y compared to younger/middle aged adults, and for the risk of SARS-CoV-2 infection associated with sleeping close to an infected individual. Published serological studies also suggest that younger adults (particularly those aged under 35y) often have high cumulative rates of SARS-CoV-2 infection in the community. Additionally, there is some evidence of robust spread of SARS-CoV-2 in secondary/high schools, and there appears to be more limited spread in primary schools. Some countries with relatively large class sizes in primary schools (e.g. Chile and Israel) reported sizeable outbreaks in some of those schools, though routes of transmission of infection to both students and staff are not clear from current reports. CONCLUSIONS Opening secondary/high schools is likely to contribute to the spread of SARS-CoV-2, and, if implemented, it should require both lower levels of community transmission and greater safeguards to reduce transmission. Compared to secondary/high schools, opening primary schools and daycare facilities may have a more limited effect on the spread of SARS-CoV-2 in the community, particularly under smaller class sizes and in the presence of mitigation measures. Efforts to avoid crowding in the classroom and other mitigation measures should be implemented, to the extent possible, when opening primary schools. Efforts should be undertaken to diminish the mixing in younger adults to mitigate the spread of the epidemic in the whole community.
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Affiliation(s)
- E Goldstein
- Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, United States
| | - M Lipsitch
- Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, United States
- Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, United States
| | - M Cevik
- Division of Infection and Global Health, School of Medicine, University of St Andrews, St Andrews, United Kingdom
- NHS Lothian Infection Service, Regional Infectious Diseases Unit, Western General Hospital, Edinburgh, United Kingdom
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63
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Chikina M, Pegden W. Modeling strict age-targeted mitigation strategies for COVID-19. PLoS One 2020; 15:e0236237. [PMID: 32706809 PMCID: PMC7380601 DOI: 10.1371/journal.pone.0236237] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2020] [Accepted: 07/01/2020] [Indexed: 01/15/2023] Open
Abstract
We use a simple SIR-like epidemic model integrating known age-contact patterns for the United States to model the effect of age-targeted mitigation strategies for a COVID-19-like epidemic. We find that, among strategies which end with population immunity, strict age-targeted mitigation strategies have the potential to greatly reduce mortalities and ICU utilization for natural parameter choices.
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Affiliation(s)
- Maria Chikina
- Department of Computation and Systems Biology, University of Pittsburgh, Pittsburgh, PA, United Status of America
| | - Wesley Pegden
- Department of Mathematical Sciences, Carnegie Mellon University, Pittsburgh, PA, United Status of America
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64
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Di Bari M, Balzi D, Carreras G, Onder G. Extensive Testing May Reduce COVID-19 Mortality: A Lesson From Northern Italy. Front Med (Lausanne) 2020; 7:402. [PMID: 32766267 PMCID: PMC7381134 DOI: 10.3389/fmed.2020.00402] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Accepted: 06/26/2020] [Indexed: 11/13/2022] Open
Abstract
The effects of different COVID-19 swab testing policies in Italy need investigation. We examined the relationship between the number of COVID-19 swab tests (per 10,000 population) performed from February 24 through March 27 and 7-day lagged COVID-19 mortality (per 10,000 population) in four regions of northern Italy. Lombardy, Piedmont, and initially, also Emilia-Romagna, which followed recommendations for limiting swab testing to symptomatic subjects requiring hospitalization, had a much steeper increase in mortality with increasing number of tests performed than Veneto, which applied a policy of broader testing. The relationship between tests performed and mortality declined in Emilia-Romagna in coincidence with a substantial increase in the number of tests performed on March 18. When the cumulative number of tests performed was regressed linearly toward lagged mortality in Lombardy and Veneto, the slope of the regression was 133 in Veneto and 10.4 tests per one death in Lombardy. These findings suggest that the strategy adopted in Veneto, similar to that in South Korea, was effective in containing COVID-19 epidemics and should be applied in other regions of Italy and countries in Europe.
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Affiliation(s)
- Mauro Di Bari
- Research Unit of Medicine of Aging, Department of Experimental and Clinical Medicine, University of Florence, Florence, Italy
- Unit of Geriatrics, Department of Medicine and Geriatrics, Azienda Ospedaliero-Universitaria Careggi, Florence, Italy
| | - Daniela Balzi
- Unit of Epidemiology, Department of Prevention, Azienda USL Toscana Centro, Florence, Italy
| | - Giulia Carreras
- Research Unit of Medicine of Aging, Department of Experimental and Clinical Medicine, University of Florence, Florence, Italy
| | - Graziano Onder
- Department of Cardiovascular, Endocrine-Metabolic Diseases and Aging, Istituto Superiore di Sanità, Rome, Italy
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65
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Siwiak M, Szczesny P, Siwiak M. From the index case to global spread: the global mobility based modelling of the COVID-19 pandemic implies higher infection rate and lower detection ratio than current estimates. PeerJ 2020; 8:e9548. [PMID: 32728498 PMCID: PMC7357567 DOI: 10.7717/peerj.9548] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2020] [Accepted: 06/24/2020] [Indexed: 12/28/2022] Open
Abstract
BACKGROUND Since the outbreak of the COVID-19 pandemic, multiple efforts of modelling of the geo-temporal transmissibility of the virus have been undertaken, but none describes the pandemic spread at the global level. The aim of this research is to provide a high-resolution global model of the pandemic that overcomes the problem of biased country-level data on the number of infected cases. To achieve this we propose a novel SIR-type metapopulation transmission model and a set of analytically derived model parameters. We used them to perform a simulation of the disease spread with help of the Global Epidemic and Mobility (GLEAM) framework embedding actual population densities, commute patterns and long-range travel networks. The simulation starts on 17 November 2019 with the index case (presymptomatic, yet infectious) in Wuhan, China, and results in an accurate prediction of the number of diagnosed cases after 154 days in multiple countries across five continents. In addition, the model outcome shows high compliance with the results of a random screening test conducted on pregnant women in the New York area. METHODS We have built a modified SIR metapopulation transmission model and parameterized it analytically either by setting the values of the parameters based on the literature, or by assuming their plausible values. We compared our results with the number of diagnosed cases in twenty selected countries, ones which provide reliable statistics but differ substantially in terms of strength and speed of undertaken Non-Drug Interventions. The obtained 95% confidence intervals for the predictions are in agreement with the empirical data. RESULTS The parameters that successfully model the pandemic are: the basic reproduction number R 0, 4.4; a latent non-infectious period of 1.1. days followed by 4.6 days of the presymptomatic infectious period; the probability of developing severe symptoms, 0.01; the probability of being diagnosed when presenting severe symptoms of 0.6; the probability of diagnosis for cases with mild symptoms or asymptomatic, 0.001. DISCUSSION Parameters that successfully reproduce the observed number of cases indicate that both R 0 and the prevalence of the virus might be underestimated. This is in concordance with the newest research on undocumented COVID-19 cases. Consequently, the actual mortality rate is putatively lower than estimated. Confirmation of the pandemic characteristic by further refinement of the model and screening tests is crucial for developing an effective strategy for the global epidemiological crisis.
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66
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Naughton SX, Raval U, Pasinetti GM. Potential Novel Role of COVID-19 in Alzheimer's Disease and Preventative Mitigation Strategies. J Alzheimers Dis 2020; 76:21-25. [PMID: 32538855 DOI: 10.3233/jad-200537] [Citation(s) in RCA: 78] [Impact Index Per Article: 19.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
There are a number of potential implications for the field of Alzheimer's disease (AD) stemming from the global spread of SARS-CoV-2. Neuroinflammation is known to be a prominent feature of neurodegeneration and plays a major role in AD pathology. Immune response and excessive inflammation in COVID-19 may also accelerate the progression of brain inflammatory neurodegeneration, and elderly individuals are more susceptible to severe outcomes after SARS-CoV-2 infection. Individuals with type 2 diabetes (T2D) are at an increased risk for AD as well as severe outcomes after SARS-CoV-2 infection. Genetic and socioeconomic factors influencing the rates of T2D, AD, and COVID-19 severity may create an exceptionally high-risk profile for certain demographics such as African Americans and Hispanic Americans. Type I interferon response plays an important role in both host response to viral infection, as well as AD pathology and may be a sensible therapeutic target in both AD and COVID-19.
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Affiliation(s)
- Sean X Naughton
- Department of Neurology, Mount Sinai School of Medicine, New York, NY, USA
| | - Urdhva Raval
- Department of Neurology, Mount Sinai School of Medicine, New York, NY, USA
| | - Giulio M Pasinetti
- Department of Neurology, Mount Sinai School of Medicine, New York, NY, USA.,James J. Peters Veterans Affairs Medical Center, Bronx, NY, USA
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67
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Kain MP, Childs ML, Becker AD, Mordecai EA. Chopping the tail: how preventing superspreading can help to maintain COVID-19 control. MEDRXIV : THE PREPRINT SERVER FOR HEALTH SCIENCES 2020:2020.06.30.20143115. [PMID: 32637966 PMCID: PMC7340192 DOI: 10.1101/2020.06.30.20143115] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Disease transmission is notoriously heterogeneous, and SARS-CoV-2 is no exception. A skewed distribution where few individuals or events are responsible for the majority of transmission can result in explosive, superspreading events, which produce rapid and volatile epidemic dynamics, especially early or late in epidemics. Anticipating and preventing superspreading events can produce large reductions in overall transmission rates. Here, we present a compartmental (SEIR) epidemiological model framework for estimating transmission parameters from multiple imperfectly observed data streams, including reported cases, deaths, and mobile phone-based mobility that incorporates individual-level heterogeneity in transmission using previous estimates for SARS-CoV-1 and SARS-CoV-2. We parameterize the model for COVID-19 epidemic dynamics by estimating a time-varying transmission rate that incorporates the impact of non-pharmaceutical intervention strategies that change over time, in five epidemiologically distinct settings---Los Angeles and Santa Clara Counties, California; Seattle (King County), Washington; Atlanta (Dekalb and Fulton Counties), Georgia; and Miami (Miami-Dade County), Florida. We find the effective reproduction number R E dropped below 1 rapidly following social distancing orders in mid-March, 2020 and remained there into June in Santa Clara County and Seattle, but climbed above 1 in late May in Los Angeles, Miami, and Atlanta, and has trended upward in all locations since April. With the fitted model, we ask: how does truncating the tail of the individual-level transmission rate distribution affect epidemic dynamics and control? We find interventions that truncate the transmission rate distribution while partially relaxing social distancing are broadly effective, with impacts on epidemic growth on par with the strongest population-wide social distancing observed in April, 2020. Given that social distancing interventions will be needed to maintain epidemic control until a vaccine becomes widely available, "chopping off the tail" to reduce the probability of superspreading events presents a promising option to alleviate the need for extreme general social distancing.
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Affiliation(s)
- Morgan P Kain
- Department of Biology, Stanford University, Stanford, CA, 94305, USA
- Natural Capital Project, Woods Institute for the Environment, Stanford University, Stanford, CA 94305, USA
| | - Marissa L Childs
- Emmett Interdisciplinary Program in Environment and Resources, Stanford University, Stanford, CA, 94305, USA
| | | | - Erin A Mordecai
- Department of Biology, Stanford University, Stanford, CA, 94305, USA
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68
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Stallmach A, Sturm A, Blumenstein I, Helwig U, Koletzko S, Lynen P, Schmidt C, Dignaß A, Kucharzik T. [Addendum to S3-Guidelines Crohn's disease and ulcerative colitis: Management of Patients with Inflammatory Bowel Disease in the COVID-19 Pandemic - open questions and answers]. ZEITSCHRIFT FUR GASTROENTEROLOGIE 2020; 58:672-692. [PMID: 32659830 PMCID: PMC7416209 DOI: 10.1055/a-1193-5475] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Die COVID-19-Pandemie ist ein weltweiter Ausbruch von neu aufgetretenen Infektionen mit dem SARS-CoV-2-Virus, von denen weltweit derzeit mehr als 10.670.000 Menschen erkrankt sind bzw. waren. In Deutschland leiden ca. 450.000 Patienten an einer chronisch entzündlichen Darmerkrankung; diese Patienten benötigen in der Regel eine kontinuierliche und kompetente Betreuung. Vor dem Hintergrund eines rasch zunehmenden Wissenszuwachses haben 68 Experten, die die derzeit gültigen Leitlinien der DGVS zum Morbus Crohn und zur Colitis ulcerosa erstellt haben, im Rahmen einer virtuellen Konferenz aktuelle und praxisnahe Empfehlungen formuliert, um die Versorgung von CED-Patienten zu verbessern. Diese adressieren das Infektionsrisiko einschließlich des Risikos für besondere Gruppen, den möglichen Verlauf der Erkrankung und die Konsequenzen für die medikamentöse und die operative Therapie der Grunderkrankung sowie allgemeine Maßnahmen zur Infektionsprävention und adjuvante Präventions- und Therapiemöglichkeiten.
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Affiliation(s)
- Andreas Stallmach
- Klinik für Innere Medizin IV (Gastroenterologie, Infektiologie und Hepatologie), Universitätsklinikum Jena, Jena
| | - Andreas Sturm
- Klinik für Innere Medizin, Schwerpunkt Gastroenterologie, DRK Kliniken Berlin | Westend, Berlin
| | - Irina Blumenstein
- Medizinische Klinik 1 (Gastroenterologie und Hepatologie, Pneumologie und Allergologie, Endokrinologie und Diabetologie sowie Ernährungsmedizin), Universitätsklinikum Frankfurt, Goethe-Universität, Frankfurt
| | - Ulf Helwig
- Internistische Praxengemeinschaft Oldenburg, Oldenburg
| | - Sibylle Koletzko
- Kinderklinik und Kinderpoliklinik im Dr. von Hauner Kinderspital, LMU Klinikum der Universität München, München
| | - Petra Lynen
- Deutsche Gesellschaft für Gastroenterologie, Verdauungs- und Stoffwechselerkrankungen, Berlin
| | - Carsten Schmidt
- Medizinische Klinik II (Gastroenterologie, Hepatologie, Endokrinologie, Diabetologie und Infektiologie), Klinikum Fulda, Universitätsmedizin Marburg - Campus Fulda, Fulda
| | - Axel Dignaß
- Medizinische Klinik I, Agaplesion Markus Krankenhaus, Frankfurt
| | - Torsten Kucharzik
- Klinik für Innere Medizin Gastroenterologie, Klinikum Lüneburg, Lüneburg
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69
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Evaluation of Aircraft Boarding Scenarios Considering Reduced Transmissions Risks. SUSTAINABILITY 2020. [DOI: 10.3390/su12135329] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
Air travel appears as particularly hazardous in a pandemic situation, since infected people can travel worldwide and could cause new breakouts in remote locations. The confined space conditions in the aircraft cabin necessitate a small physical distance between passengers and hence may boost virus transmissions. In our contribution, we implemented a transmission model in a virtual aircraft environment to evaluate the individual interactions between passengers during aircraft boarding and deboarding. Since no data for the transmission is currently available, we reasonably calibrated our model using a sample case from 2003. The simulation results show that standard boarding procedures create a substantial number of possible transmissions if a contagious passenger is present. The introduction of physical distances between passengers decreases the number of possible transmissions by approx. 75% for random boarding sequences, and could further decreased by more strict reduction of hand luggage items (less time for storage, compartment space is always available). If a second door is used for boarding and deboarding, the standard boarding times could be reached. Individual boarding strategies (by seat) could reduce the transmission potential to a minimum, but demand for complex pre-sorting of passengers. Our results also exhibit that deboarding consists of the highest transmission potential and only minor benefits from distance rules and hand luggage regulations.
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70
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Munro APS, Faust SN. Children are not COVID-19 super spreaders: time to go back to school. Arch Dis Child 2020; 105:618-619. [PMID: 32371442 DOI: 10.1136/archdischild-2020-319474] [Citation(s) in RCA: 118] [Impact Index Per Article: 29.5] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/23/2020] [Accepted: 04/28/2020] [Indexed: 12/18/2022]
Affiliation(s)
- Alasdair P S Munro
- NIHR Southampton Clinical Research Facility and NIHR Southampton Biomedical Research Centre, University Hospital Southampton NHS Foundation Trust, Southampton, Hampshire, UK .,Faculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, Hampshire, UK
| | - Saul N Faust
- NIHR Southampton Clinical Research Facility and NIHR Southampton Biomedical Research Centre, University Hospital Southampton NHS Foundation Trust, Southampton, Hampshire, UK.,Faculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, Hampshire, UK
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71
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Abstract
The first pediatric coronavirus disease 2019 (COVID-19) case was confirmed in Shenzhen, China on January 20, 2020. At the beginning of the outbreak, COVID-19 pneumonia was more common in adults than in children and adolescents, and the rate of confirmed pediatric cases was relatively lower. However, as screening tests and pathogen detection campaigns were initiated in more regions as the outbreak spread, the number of pediatric infection cases increased significantly. Currently, studies on pediatric COVID-19 are limited in the literature to case reports and case series, and a few epidemiological studies. COVID-19 has distinct characteristics in the pediatric population compared to adults; therefore, we need to better understand the characteristics of this disease in children. Discovering the characteristics of the pediatric COVID-19 disease is important for contributing to the diagnosis and treatment of the disease in this population. In this review, clinical characteristics, epidemiology, diagnosis, and management of pediatric COVID-19 pneumonia based on the recent literature are discussed. [Pediatr Ann. 2020;49(7):e319-e325.].
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72
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Covid-19 diffusion in a neurosurgical "clean" department: the asymptomatic Trojan horse. Acta Neurochir (Wien) 2020; 162:1507-1508. [PMID: 32383014 PMCID: PMC7205479 DOI: 10.1007/s00701-020-04386-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2020] [Accepted: 04/29/2020] [Indexed: 12/03/2022]
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73
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Keeley AJ, Evans CM, de Silva TI. Asymptomatic SARS-CoV-2 infection: the tip or the iceberg? Thorax 2020; 75:621-622. [DOI: 10.1136/thoraxjnl-2020-215337] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2020] [Accepted: 06/06/2020] [Indexed: 12/23/2022]
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74
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[Management of diagnostic procedures and treatment of sleep related breathing disorders in the context of the coronavirus pandemic]. SOMNOLOGIE 2020; 24:274-284. [PMID: 32837296 PMCID: PMC7306656 DOI: 10.1007/s11818-020-00253-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Bei der Erbringung schlafmedizinischer Leistungen im Zusammenhang mit der Corona-Pandemie sind besondere Aspekte zu berücksichtigen. Trotz aller vorbeugender Maßnahmen muss aufgrund der hohen Dunkelziffer mit SARS-CoV2-Kontakten im Schlaflabor gerechnet und entsprechende Vorkehrungen getroffen werden. Die Fortführung bzw. Wiederaufnahme schlafmedizinischer Leistungen unter den gebotenen Hygienemaßnahmen ist dennoch dringend anzustreben zur Vermeidung medizinischer und psychosozialer Komplikationen. Es gibt keine gesicherten Hinweise für eine Verschlechterung der COVID-19 durch eine CPAP-Therapie. Grundsätzlich kann die Anwendung einer Überdrucktherapie über verschiedene Maskensysteme mit der Bildung einer infektiösen Aerosolwolke einhergehen. Bei bestätigter Infektion mit SARS-CoV-2 sollte im ambulanten Umfeld eine vorbestehende Maskentherapie unter Einhaltung der Vorgaben des RKI zur häuslichen Isolierung fortgeführt werden, da eine Therapiebeendigung mit einer zusätzlichen kardiopulmonalen Belastung durch die unbehandelte schlafbezogene Atmungsstörung einhergeht. Mit geeigneter persönlicher Schutzausrüstung (Augenschutz, FFP2/FFP3-Maske, Kittel) kann eine PAP-Therapie nach jetzigem Kenntnisstand vom Personal ohne erhöhtes Infektionsrisiko durchgeführt werden. Dieses gemeinsame Positionspapier der Deutschen Gesellschaft für Pneumologie und Beatmungsmedizin (DGP) und der Deutschen Gesellschaft für Schlafmedizin (DGSM) beinhaltet konkrete Empfehlungen zur Durchführung schlafmedizinischer Diagnostik und Therapie im Umfeld der Corona-Pandemie.
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75
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Swift A. Easing lockdown for school children: why so contentious? Evid Based Nurs 2020; 23:65-67. [PMID: 32554400 DOI: 10.1136/ebnurs-2020-103320] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/04/2020] [Indexed: 11/03/2022]
Affiliation(s)
- Amelia Swift
- Nursing, University of Birmingham, Birmingham B15 2TT, UK
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76
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Crawford FW, Li ZR, Morozova O. COVID-19 projections for reopening Connecticut. MEDRXIV : THE PREPRINT SERVER FOR HEALTH SCIENCES 2020:2020.06.16.20126425. [PMID: 32588003 PMCID: PMC7310663 DOI: 10.1101/2020.06.16.20126425] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Key PointsClosure of schools and the statewide “Stay Safe, Stay Home” order have effectively reduced COVID-19 transmission in Connecticut, with model projections estimating incidence at about 1,300 new infections per day.If close interpersonal contact increases quickly in Connecticut following reopening on May 20, the state is at risk of a substantial increase of COVID-19 infections, hospitalizations, and deaths by late Summer 2020.Real-time metrics including case counts, hospitalizations, and deaths may fail to provide enough advance warning to avoid resurgence.Substantial uncertainty remains in our knowledge of cumulative COVID-19 incidence, the proportion of infected individuals who are asymptomatic, infectiousness of children, the effects of testing and contact tracing on isolation of infected individuals, and how contact patterns may change following reopening.
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Affiliation(s)
- Forrest W Crawford
- Department of Biostatistics, Yale School of Public Health
- Department of Statistics & Data Science, Yale University
- Department of Ecology & Evolutionary Biology, Yale University
- Yale School of Management
| | | | - Olga Morozova
- Department of Biostatistics, Yale School of Public Health
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77
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Antinori S, Torre A, Antinori C, Bonazzetti C, Sollima S, Ridolfo AL, Galli M. SARS-COV-2 infection: Across the border into the family. Travel Med Infect Dis 2020; 36:101784. [PMID: 32526371 PMCID: PMC7280111 DOI: 10.1016/j.tmaid.2020.101784] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2020] [Revised: 06/05/2020] [Accepted: 06/06/2020] [Indexed: 01/16/2023]
Affiliation(s)
- Spinello Antinori
- Luigi Sacco Department of Biomedical and Clinical Sciences, University of Milan, Italy; III Division of Infectious Diseases, Department of Infectious Diseases, Luigi Sacco Hospital, ASST Fatebenefratelli Sacco, Milan, Italy.
| | - Alessandro Torre
- III Division of Infectious Diseases, Department of Infectious Diseases, Luigi Sacco Hospital, ASST Fatebenefratelli Sacco, Milan, Italy
| | | | - Cecilia Bonazzetti
- Luigi Sacco Department of Biomedical and Clinical Sciences, University of Milan, Italy; III Division of Infectious Diseases, Department of Infectious Diseases, Luigi Sacco Hospital, ASST Fatebenefratelli Sacco, Milan, Italy
| | - Salvatore Sollima
- III Division of Infectious Diseases, Department of Infectious Diseases, Luigi Sacco Hospital, ASST Fatebenefratelli Sacco, Milan, Italy
| | - Anna Lisa Ridolfo
- III Division of Infectious Diseases, Department of Infectious Diseases, Luigi Sacco Hospital, ASST Fatebenefratelli Sacco, Milan, Italy
| | - Massimo Galli
- Luigi Sacco Department of Biomedical and Clinical Sciences, University of Milan, Italy; III Division of Infectious Diseases, Department of Infectious Diseases, Luigi Sacco Hospital, ASST Fatebenefratelli Sacco, Milan, Italy
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78
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Fantini MP, Reno C, Biserni GB, Savoia E, Lanari M. COVID-19 and the re-opening of schools: a policy maker's dilemma. Ital J Pediatr 2020; 46:79. [PMID: 32517815 PMCID: PMC7280677 DOI: 10.1186/s13052-020-00844-1] [Citation(s) in RCA: 49] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/28/2020] [Accepted: 05/31/2020] [Indexed: 01/06/2023] Open
Abstract
The epidemic of coronavirus disease 2019 (COVID-19) broke out in Wuhan, China, in December 2019 and rapidly spread across the world. In order to counter this epidemic, several countries put in place different restrictive measures, such as the school’s closure and a total lockdown. However, as the knowledge on the disease progresses, clinical evidence showed that children mainly have asymptomatic or mild disease and it has been suggested that they are also less likely to spread the virus. Moreover, the lockdown and the school closure could have negative consequences on children, affecting their social life, their education and their mental health. As many countries have already entered or are planning a phase of gradual lifting of the containment measures of social distancing, it seems plausible that the re-opening of nursery schools and primary schools could be considered a policy to be implemented at an early stage of recovery efforts, putting in place measures to do it safely, such as the maintenance of social distance, the reorganisation of classes into smaller groups, the provision of adequate sanitization of spaces, furniture and toys, the prompt identification of cases in the school environment and their tracing. Therefore, policy makers have the task of balancing pros and cons of the school re-opening strategy, taking into account psychological, educational and social consequences for children and their families. Another issue to be considered is represented by socio-economic disparities and inequalities which could be amplified by school’s closure.
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Affiliation(s)
- Maria Pia Fantini
- Department of Biomedical and Neuromotor Sciences, Alma Mater Studiorum - University of Bologna, 40126, Bologna, Italy
| | - Chiara Reno
- Department of Biomedical and Neuromotor Sciences, Alma Mater Studiorum - University of Bologna, 40126, Bologna, Italy.
| | - Giovanni Battista Biserni
- Department of Pediatric Emergency Unit, S. Orsola Hospital, Department of Medical and Surgical Sciences, Alma Mater Studiorum - University of Bologna, 40138, Bologna, Italy
| | - Elena Savoia
- Emergency Preparedness Research Evaluation & Practice Program Harvard T.H. Chan School of Public Health, Boston, MA, 02115, USA
| | - Marcello Lanari
- Department of Pediatric Emergency Unit, S. Orsola Hospital, Department of Medical and Surgical Sciences, Alma Mater Studiorum - University of Bologna, 40138, Bologna, Italy
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79
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Fiore VG, DeFelice N, Glicksberg BS, Perl O, Shuster A, Kulkarni K, O’Brien M, Pisauro MA, Chung D, Gu X. Containment of future waves of COVID-19: simulating the impact of different policies and testing capacities for contact tracing, testing, and isolation. MEDRXIV : THE PREPRINT SERVER FOR HEALTH SCIENCES 2020:2020.06.05.20123372. [PMID: 32577688 PMCID: PMC7302294 DOI: 10.1101/2020.06.05.20123372] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
We used multi-agent simulations to estimate the testing capacity required to find and isolate a number of infections sufficient to break the chain of transmission of SARS-CoV-2. Depending on the mitigation policies in place, a daily capacity between 0.7 to 3.6 tests per thousand was required to contain the disease. However, if contact tracing and testing efficacy dropped below 60% (e.g. due to false negatives or reduced tracing capability), the number of infections kept growing exponentially, irrespective of any testing capacity. Under these conditions, the population's geographical distribution and travel behaviour could inform sampling policies to aid a successful containment.
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Affiliation(s)
- Vincenzo G. Fiore
- Icahn School of Medicine at Mount Sinai, Department of Psychiatry, 1 Gustave L. Levy Pl, New York, NY 10029
| | - Nicholas DeFelice
- Icahn School of Medicine at Mount Sinai, Department of Environmental Medicine and Public Health, 1 Gustave L. Levy Pl, New York, NY 10029
| | - Benjamin S. Glicksberg
- Icahn School of Medicine at Mount Sinai, Department of Genetics and Genomic Sciences, 1 Gustave L. Levy Pl, New York, NY 10029
- Icahn School of Medicine at Mount Sinai, Hasso Plattner Institute for Digital Health at Mount Sinai, 770 Lexington Ave, 14 Floor, New York, NY 10065
| | - Ofer Perl
- Icahn School of Medicine at Mount Sinai, Department of Psychiatry, 1 Gustave L. Levy Pl, New York, NY 10029
| | - Anastasia Shuster
- Icahn School of Medicine at Mount Sinai, Department of Psychiatry, 1 Gustave L. Levy Pl, New York, NY 10029
| | - Kaustubh Kulkarni
- Icahn School of Medicine at Mount Sinai, Department of Psychiatry, 1 Gustave L. Levy Pl, New York, NY 10029
| | - Madeline O’Brien
- Icahn School of Medicine at Mount Sinai, Department of Psychiatry, 1 Gustave L. Levy Pl, New York, NY 10029
| | - M. Andrea Pisauro
- Wellcome Centre for Integrative Neuroimaging, University of Oxford, Department of Experimental Psychology, New Radcliffe House, Walton St, Oxford OX2 6GG
| | - Dongil Chung
- Ulsan National Institute of Science and Technology, Department of Human Factors Engineering, 50 UNIST-gil, Ulsan, South Korea
| | - Xiaosi Gu
- Icahn School of Medicine at Mount Sinai, Department of Psychiatry, 1 Gustave L. Levy Pl, New York, NY 10029
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80
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Leclerc QJ, Fuller NM, Knight LE, Funk S, Knight GM. What settings have been linked to SARS-CoV-2 transmission clusters? Wellcome Open Res 2020; 5:83. [PMID: 32656368 PMCID: PMC7327724 DOI: 10.12688/wellcomeopenres.15889.2] [Citation(s) in RCA: 207] [Impact Index Per Article: 51.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/01/2020] [Indexed: 02/02/2023] Open
Abstract
Background: Concern about the health impact of novel coronavirus SARS-CoV-2 has resulted in widespread enforced reductions in people's movement ("lockdowns"). However, there are increasing concerns about the severe economic and wider societal consequences of these measures. Some countries have begun to lift some of the rules on physical distancing in a stepwise manner, with differences in what these "exit strategies" entail and their timeframes. The aim of this work was to inform such exit strategies by exploring the types of indoor and outdoor settings where transmission of SARS-CoV-2 has been reported to occur and result in clusters of cases. Identifying potential settings that result in transmission clusters allows these to be kept under close surveillance and/or to remain closed as part of strategies that aim to avoid a resurgence in transmission following the lifting of lockdown measures. Methods: We performed a systematic review of available literature and media reports to find settings reported in peer reviewed articles and media with these characteristics. These sources are curated and made available in an editable online database. Results: We found many examples of SARS-CoV-2 clusters linked to a wide range of mostly indoor settings. Few reports came from schools, many from households, and an increasing number were reported in hospitals and elderly care settings across Europe. Conclusions: We identified possible places that are linked to clusters of COVID-19 cases and could be closely monitored and/or remain closed in the first instance following the progressive removal of lockdown restrictions. However, in part due to the limits in surveillance capacities in many settings, the gathering of information such as cluster sizes and attack rates is limited in several ways: inherent recall bias, biased media reporting and missing data.
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Affiliation(s)
- Quentin J. Leclerc
- Department of Infectious Disease Epidemiology, Faculty of Epidemiology and Population Health, London School of Hygiene & Tropical Medicine, London, UK
- Centre for Mathematical Modelling of Infectious Diseases, London School of Hygiene & Tropical Medicine, London, UK
| | - Naomi M. Fuller
- Department of Infectious Disease Epidemiology, Faculty of Epidemiology and Population Health, London School of Hygiene & Tropical Medicine, London, UK
- Centre for Mathematical Modelling of Infectious Diseases, London School of Hygiene & Tropical Medicine, London, UK
| | | | - CMMID COVID-19 Working Group
- Department of Infectious Disease Epidemiology, Faculty of Epidemiology and Population Health, London School of Hygiene & Tropical Medicine, London, UK
- Centre for Mathematical Modelling of Infectious Diseases, London School of Hygiene & Tropical Medicine, London, UK
- GP registrar, Brecon Surgery, Gwent Deanery, UK
| | - Sebastian Funk
- Department of Infectious Disease Epidemiology, Faculty of Epidemiology and Population Health, London School of Hygiene & Tropical Medicine, London, UK
- Centre for Mathematical Modelling of Infectious Diseases, London School of Hygiene & Tropical Medicine, London, UK
| | - Gwenan M. Knight
- Department of Infectious Disease Epidemiology, Faculty of Epidemiology and Population Health, London School of Hygiene & Tropical Medicine, London, UK
- Centre for Mathematical Modelling of Infectious Diseases, London School of Hygiene & Tropical Medicine, London, UK
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81
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Li X, Xu W, Dozier M, He Y, Kirolos A, Theodoratou E. The role of children in transmission of SARS-CoV-2: A rapid review. J Glob Health 2020; 10:011101. [PMID: 32612817 PMCID: PMC7323934 DOI: 10.7189/jogh.10.011101] [Citation(s) in RCA: 83] [Impact Index Per Article: 20.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
Abstract
BACKGROUND Understanding the role of children in the transmission of SARS-CoV-2 is urgently required given its policy implications in relation to the reopening of schools and intergenerational contacts. METHODS We conducted a rapid review of studies that investigated the role of children in the transmission of SARS-CoV-2. We synthesized evidence for four categories: 1) studies reporting documented cases of SARS-CoV-2 transmission by infected children; 2) studies presenting indirect evidence on the potential of SARS-CoV-2 transmission by (both symptomatic and asymptomatic) children; 3) studies reporting cluster outbreaks of COVID-19 in schools; 4) studies estimating the proportions of children infected by SARS-CoV-2, and reported results narratively. RESULTS A total of 16 unique studies were included for narrative synthesis. There is limited evidence detailing transmission of SARS-CoV-2 from infected children. We found two studies that reported a 3-month-old whose parents developed symptomatic COVID-19 seven days after caring for the infant and two children who may have contracted COVID-19 from the initial cases at a school in New South Wales. In addition, we identified six studies presenting indirect evidence on the potential for SARS-CoV-2 transmission by children, three of which found prolonged virus shedding in stools. There is little data on the transmission of SARS-CoV-2 in schools. We identified only two studies reporting outbreaks of COVID-19 in school settings and one case report of a child attending classes but not infecting any other pupils or staff. Lastly, we identified six studies estimating the proportion of children infected; data from population-based studies in Iceland, Italy, South Korea, Netherlands, California and a hospital-based study in the UK suggest children may be less likely to be infected. CONCLUSIONS Preliminary results from population-based and school-based studies suggest that children may be less frequently infected or infect others, however current evidence is limited. Prolonged faecal shedding observed in studies highlights the potentially increased risk of faeco-oral transmission in children. Further seroprevalence studies (powered adequately for the paediatric population) are urgently required to establish whether children are in fact less likely to be infected compared to adults. NOTE We plan to update this rapid review as new data becomes available. These updates are available at https://www.ed.ac.uk/usher/uncover/completed-uncover-reviews.
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Affiliation(s)
- Xue Li
- Centre for Global Health, Usher Institute, University of Edinburgh, Edinburgh, UK
| | - Wei Xu
- Centre for Global Health, Usher Institute, University of Edinburgh, Edinburgh, UK
| | - Marshall Dozier
- College of Medicine and Veterinary Medicine, University of Edinburgh, Edinburgh, UK
| | - Yazhou He
- Centre for Global Health, Usher Institute, University of Edinburgh, Edinburgh, UK
| | - Amir Kirolos
- Centre for Global Health, Usher Institute, University of Edinburgh, Edinburgh, UK
- Department of Clinical Infection, Microbiology & Immunology, Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool, Liverpool, UK
| | - Evropi Theodoratou
- Centre for Global Health, Usher Institute, University of Edinburgh, Edinburgh, UK
- Cancer Research UK Edinburgh Centre, Medical Research Council Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, UK
| | - on behalf of UNCOVER
- Centre for Global Health, Usher Institute, University of Edinburgh, Edinburgh, UK
- College of Medicine and Veterinary Medicine, University of Edinburgh, Edinburgh, UK
- Department of Clinical Infection, Microbiology & Immunology, Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool, Liverpool, UK
- Cancer Research UK Edinburgh Centre, Medical Research Council Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, UK
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82
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Peto J, Carpenter J, Smith GD, Duffy S, Houlston R, Hunter DJ, McPherson K, Pearce N, Romer P, Sasieni P, Turnbull C. Weekly COVID-19 testing with household quarantine and contact tracing is feasible and would probably end the epidemic. ROYAL SOCIETY OPEN SCIENCE 2020; 7:200915. [PMID: 32742705 PMCID: PMC7353981 DOI: 10.1098/rsos.200915] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2020] [Accepted: 06/11/2020] [Indexed: 05/06/2023]
Abstract
The COVID-19 epidemic can probably be ended and normal life restored, perhaps quite quickly, by weekly SARS-CoV-2 RNA testing together with household quarantine and systematic contact tracing. Isolated outbreaks could then be contained by contact tracing, supplemented if necessary by temporary local reintroduction of population testing or lockdown. Leading public health experts have recommended that this should be tried in a demonstration project in which a medium-sized city introduces weekly testing and lifts lockdown completely. The idea was not considered by the groups whose predictions have guided UK policy, so we have examined the statistical case for such a study. The combination of regular testing with strict household quarantine, which was not analysed in their models, has remarkable power to reduce transmission to the community from other household members as well as providing earlier diagnosis and facilitating rapid contact tracing.
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Affiliation(s)
- Julian Peto
- Faculty of Epidemiology and Population Health, London School of Hygiene and Tropical Medicine, London, UK
| | - James Carpenter
- Faculty of Epidemiology and Population Health, London School of Hygiene and Tropical Medicine, London, UK
| | - George Davey Smith
- Bristol Population Health Science Institute, Bristol University, Bristol, UK
| | - Stephen Duffy
- Wolfson Institute of Preventive Medicine, Queen Mary University of London, London, UK
| | - Richard Houlston
- Division of Genetics and Epidemiology, Institute of Cancer Research, London, UK
| | - David J. Hunter
- Nuffield Department of Population Health, Oxford University, Oxford, UK
| | | | - Neil Pearce
- Faculty of Epidemiology and Population Health, London School of Hygiene and Tropical Medicine, London, UK
| | - Paul Romer
- Stern School of Business, New York University, New York, USA
| | - Peter Sasieni
- School of Cancer and Pharmaceutical Sciences, King's College London, London, UK
| | - Clare Turnbull
- Division of Genetics and Epidemiology, Institute of Cancer Research, London, UK
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83
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Italian Public Health Response to the COVID-19 Pandemic: Case Report from the Field, Insights and Challenges for the Department of Prevention. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2020; 17:ijerph17103666. [PMID: 32456072 PMCID: PMC7277676 DOI: 10.3390/ijerph17103666] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 04/22/2020] [Revised: 05/15/2020] [Accepted: 05/16/2020] [Indexed: 10/26/2022]
Abstract
: The coronavirus disease (COVID-19) outbreak is rapidly progressing globally, and Italy, as one of the main pandemic hotspots, may provide some hard lessons for other countries. In this paper, we summarize the current organizational capacity and provide a pragmatic and narrative account of strategies and activities implemented by the Department of Prevention (Dipartimento di Prevenzione)-the regional entity of the Local Health Authority of the Italian National Health Service in charge of public health-since the beginning of the outbreak. We conduct a preliminary analysis of general strengths, weaknesses, opportunities, and threats (SWOT) of the response strategies from a local perspective. Furthermore, we provide firsthand insights on future directions and priorities to manage this unprecedented pandemic. Our case report gives a qualitative view of the healthcare response, based on the experience of frontline professionals, with the aim to generate hypotheses about factors which may promote or hinder the prevention and management of a pandemic locally. We highlight the importance of a public health approach for responding to COVID-19 and reshaping healthcare systems.
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84
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Frontera A, Cianfanelli L, Vlachos K, Landoni G, Cremona G. Severe air pollution links to higher mortality in COVID-19 patients: The "double-hit" hypothesis. J Infect 2020; 81:255-259. [PMID: 32447007 PMCID: PMC7240268 DOI: 10.1016/j.jinf.2020.05.031] [Citation(s) in RCA: 179] [Impact Index Per Article: 44.8] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2020] [Revised: 05/05/2020] [Accepted: 05/06/2020] [Indexed: 12/11/2022]
Abstract
OBJECTIVES In areas of SARS-CoV-2 outbreak worldwide mean air pollutants concentrations vastly exceed the maximum limits. Chronic exposure to air pollutants have been associated with lung ACE-2 over-expression which is known to be the main receptor for SARS-CoV-2. The aim of this study was to analyse the relationship between air pollutants concentration (PM 2.5 and NO2) and COVID-19 outbreak, in terms of transmission, number of patients, severity of presentation and number of deaths. METHODS COVID-19 cases, ICU admissions and mortality rate were correlated with severity of air pollution in the Italian regions. RESULTS The highest number of COVID-19 cases were recorded in the most polluted regions with patients presenting with more severe forms of the disease requiring ICU admission. In these regions, mortality was two-fold higher than the other regions. CONCLUSIONS From the data available we propose a "double-hit hypothesis": chronic exposure to PM 2.5 causes alveolar ACE-2 receptor overexpression. This may increase viral load in patients exposed to pollutants in turn depleting ACE-2 receptors and impairing host defences. High atmospheric NO2 may provide a second hit causing a severe form of SARS-CoV-2 in ACE-2 depleted lungs resulting in a worse outcome.
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Affiliation(s)
- Antonio Frontera
- IRCCS San Raffaele Scientific Institute, Via Olgettina 60, Milan, Italy.
| | | | | | - Giovanni Landoni
- IRCCS San Raffaele Scientific Institute, Via Olgettina 60, Milan, Italy; Vita-Salute San Raffaele University of Milan, Italy.
| | - George Cremona
- IRCCS San Raffaele Scientific Institute, Via Olgettina 60, Milan, Italy.
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85
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De Natale G, Ricciardi V, De Luca G, De Natale D, Di Meglio G, Ferragamo A, Marchitelli V, Piccolo A, Scala A, Somma R, Spina E, Troise C. The COVID-19 Infection in Italy: A Statistical Study of an Abnormally Severe Disease. J Clin Med 2020; 9:jcm9051564. [PMID: 32455807 PMCID: PMC7291160 DOI: 10.3390/jcm9051564] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2020] [Revised: 05/05/2020] [Accepted: 05/19/2020] [Indexed: 01/04/2023] Open
Abstract
We statistically investigate the Coronavirus Disease 19 (COVID-19) pandemic, which became particularly invasive in Italy in March 2020. We show that the high apparent lethality or case fatality ratio (CFR) observed in Italy, as compared with other countries, is likely biased by a strong underestimation of the number of infection cases. To give a more realistic estimate of the lethality of COVID-19, we use the actual (March 2020) estimates of the infection fatality ratio (IFR) of the pandemic based on the minimum observed CFR and analyze data obtained from the Diamond Princess cruise ship, a good representation of a "laboratory" case-study from an isolated system in which all the people have been tested. From such analyses, we derive more realistic estimates of the real extent of the infection as well as more accurate indicators of how fast the infection propagates. We then isolate the dominant factors causing the abnormal severity of the disease in Italy. Finally, we use the death count-the only data estimated to be reliable enough-to predict the total number of people infected and the interval of time when the infection in Italy could end.
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Affiliation(s)
- Giuseppe De Natale
- INGV, Osservatorio Vesuviano, 80124 Naples, Italy; (R.S.); (C.T.)
- CNR-INO, 80078 Pozzuoli, Italy
- Correspondence: ; Tel.: +39-081-6108510
| | - Valerio Ricciardi
- Dipartimento di Medicina Sperimentale, Università della Campania ‘L.Vanvitelli’, 80138 Naples, Italy;
- Istituto Nazionale di Fisica Nucleare—Sezione di Napoli, 80126 Naples, Italy
| | - Gabriele De Luca
- Department of Physics, University of Zurich, 8057 Zurich, Switzerland;
| | - Dario De Natale
- CoronaVerus, 80136 Naples, Italy; (D.D.N.); (G.D.M.); (A.F.); (A.P.)
| | | | - Antonio Ferragamo
- CoronaVerus, 80136 Naples, Italy; (D.D.N.); (G.D.M.); (A.F.); (A.P.)
| | - Vito Marchitelli
- Department of Mobility, Public Works, Ecology, Env, Puglia Region Government, 70100 Bari, Italy;
| | - Andrea Piccolo
- CoronaVerus, 80136 Naples, Italy; (D.D.N.); (G.D.M.); (A.F.); (A.P.)
| | - Antonio Scala
- Department of Physics ”Ettore Pancini”, Università degli Studi di Napoli “Federico II”, 80126 Naples, Italy;
| | - Renato Somma
- INGV, Osservatorio Vesuviano, 80124 Naples, Italy; (R.S.); (C.T.)
- CNR-IRISS, 80134 Naples, Italy
| | - Emanuele Spina
- Department of Neurosciences, Reproductive and Odontostomatology, Università degli Studi di Napoli “Federico II”, 80131 Naples, Italy;
| | - Claudia Troise
- INGV, Osservatorio Vesuviano, 80124 Naples, Italy; (R.S.); (C.T.)
- CNR-INO, 80078 Pozzuoli, Italy
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86
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De Natale G, Ricciardi V, De Luca G, De Natale D, Di Meglio G, Ferragamo A, Marchitelli V, Piccolo A, Scala A, Somma R, Spina E, Troise C. The COVID-19 Infection in Italy: A Statistical Study of an Abnormally Severe Disease. J Clin Med 2020; 9:jcm9051564. [PMID: 32455807 DOI: 10.20944/preprints202004.0049.v1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2020] [Revised: 05/05/2020] [Accepted: 05/19/2020] [Indexed: 05/28/2023] Open
Abstract
We statistically investigate the Coronavirus Disease 19 (COVID-19) pandemic, which became particularly invasive in Italy in March 2020. We show that the high apparent lethality or case fatality ratio (CFR) observed in Italy, as compared with other countries, is likely biased by a strong underestimation of the number of infection cases. To give a more realistic estimate of the lethality of COVID-19, we use the actual (March 2020) estimates of the infection fatality ratio (IFR) of the pandemic based on the minimum observed CFR and analyze data obtained from the Diamond Princess cruise ship, a good representation of a "laboratory" case-study from an isolated system in which all the people have been tested. From such analyses, we derive more realistic estimates of the real extent of the infection as well as more accurate indicators of how fast the infection propagates. We then isolate the dominant factors causing the abnormal severity of the disease in Italy. Finally, we use the death count-the only data estimated to be reliable enough-to predict the total number of people infected and the interval of time when the infection in Italy could end.
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Affiliation(s)
- Giuseppe De Natale
- INGV, Osservatorio Vesuviano, 80124 Naples, Italy
- CNR-INO, 80078 Pozzuoli, Italy
| | - Valerio Ricciardi
- Dipartimento di Medicina Sperimentale, Università della Campania 'L.Vanvitelli', 80138 Naples, Italy
- Istituto Nazionale di Fisica Nucleare-Sezione di Napoli, 80126 Naples, Italy
| | - Gabriele De Luca
- Department of Physics, University of Zurich, 8057 Zurich, Switzerland
| | | | | | | | - Vito Marchitelli
- Department Mobility, Pub. Works, Ecology, Env, Puglia Region Government, 70100 Bari, Italy
| | | | - Antonio Scala
- Department of Physics "Ettore Pancini", Università degli Studi di Napoli "Federico II", 80126 Naples, Italy
| | - Renato Somma
- INGV, Osservatorio Vesuviano, 80124 Naples, Italy
- CNR-IRISS, 80134 Naples, Italy
| | - Emanuele Spina
- Department of Neurosciences, Reproductive and Odontostomatology, Università degli Studi di Napoli "Federico II", 80131 Naples, Italy
| | - Claudia Troise
- INGV, Osservatorio Vesuviano, 80124 Naples, Italy
- CNR-INO, 80078 Pozzuoli, Italy
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87
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Childs ML, Kain MP, Kirk D, Harris M, Couper L, Nova N, Delwel I, Ritchie J, Mordecai EA. The impact of long-term non-pharmaceutical interventions on COVID-19 epidemic dynamics and control. MEDRXIV : THE PREPRINT SERVER FOR HEALTH SCIENCES 2020:2020.05.03.20089078. [PMID: 32511583 PMCID: PMC7276010 DOI: 10.1101/2020.05.03.20089078] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
Non-pharmaceutical interventions to combat COVID-19 transmission have worked to slow the spread of the epidemic but can have high socio-economic costs. It is critical we understand the efficacy of non-pharmaceutical interventions to choose a safe exit strategy. Many current models are not suitable for assessing exit strategies because they do not account for epidemic resurgence when social distancing ends prematurely (e.g., statistical curve fits) nor permit scenario exploration in specific locations. We developed an SEIR-type mechanistic epidemiological model of COVID-19 dynamics to explore temporally variable non-pharmaceutical interventions. We provide an interactive tool and code to estimate the transmission parameter, β, and the effective reproduction number, R eff . We fit the model to Santa Clara County, California, where an early epidemic start date and early shelter-in-place orders could provide a model for other regions. As of April 22, 2020, we estimate an R eff of 0.982 (95% CI: 0.849 - 1.107) in Santa Clara County. After June 1 (the end-date for Santa Clara County shelter-in-place as of April 27), we estimate a shift to partial social distancing, combined with rigorous testing and isolation of symptomatic individuals, is a viable alternative to indefinitely maintaining shelter-in-place. We also estimate that if Santa Clara County had waited one week longer before issuing shelter-in-place orders, 95 additional people would have died by April 22 (95% CI: 7 - 283). Given early life-saving shelter-in-place orders in Santa Clara County, longer-term moderate social distancing and testing and isolation of symptomatic individuals have the potential to contain the size and toll of the COVID-19 pandemic in Santa Clara County, and may be effective in other locations.
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Affiliation(s)
- Marissa L. Childs
- Emmett Interdisciplinary Program in Environment and Resources, Stanford University, Stanford, CA, 94305, USA
| | - Morgan P. Kain
- Department of Biology, Stanford University, Stanford, CA, 94305, USA
- Natural Capital Project, Woods Institute for the Environment, Stanford University, Stanford, CA 94305, USA
| | - Devin Kirk
- Department of Biology, Stanford University, Stanford, CA, 94305, USA
- Department of Zoology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
| | - Mallory Harris
- Department of Biology, Stanford University, Stanford, CA, 94305, USA
| | - Lisa Couper
- Department of Biology, Stanford University, Stanford, CA, 94305, USA
| | - Nicole Nova
- Department of Biology, Stanford University, Stanford, CA, 94305, USA
| | - Isabel Delwel
- Department of Biology, Stanford University, Stanford, CA, 94305, USA
| | - Jacob Ritchie
- Department of Computer Science, Stanford University, Stanford, CA, 94305, USA
| | - Erin A. Mordecai
- Department of Biology, Stanford University, Stanford, CA, 94305, USA
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88
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Leclerc QJ, Fuller NM, Knight LE, Funk S, Knight GM. What settings have been linked to SARS-CoV-2 transmission clusters? Wellcome Open Res 2020; 5:83. [PMID: 32656368 PMCID: PMC7327724 DOI: 10.12688/wellcomeopenres.15889.1] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/27/2020] [Indexed: 02/02/2023] Open
Abstract
Background: Concern about the health impact of novel coronavirus SARS-CoV-2 has resulted in widespread enforced reductions in people's movement ("lockdowns"). However, there are increasing concerns about the severe economic and wider societal consequences of these measures. Some countries have begun to lift some of the rules on physical distancing in a stepwise manner, with differences in what these "exit strategies" entail and their timeframes. The aim of this work was to inform such exit strategies by exploring the types of indoor and outdoor settings where transmission of SARS-CoV-2 has been reported to occur and result in clusters of cases. Identifying potential settings that result in transmission clusters allows these to be kept under close surveillance and/or to remain closed as part of strategies that aim to avoid a resurgence in transmission following the lifting of lockdown measures. Methods: We performed a systematic review of available literature and media reports to find settings reported in peer reviewed articles and media with these characteristics. These sources are curated and made available in an editable online database. Results: We found many examples of SARS-CoV-2 clusters linked to a wide range of mostly indoor settings. Few reports came from schools, many from households, and an increasing number were reported in hospitals and elderly care settings across Europe. Conclusions: We identified possible places that are linked to clusters of COVID-19 cases and could be closely monitored and/or remain closed in the first instance following the progressive removal of lockdown restrictions. However, in part due to the limits in surveillance capacities in many settings, the gathering of information such as cluster sizes and attack rates is limited in several ways: inherent recall bias, biased media reporting and missing data.
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Affiliation(s)
- Quentin J. Leclerc
- Department of Infectious Disease Epidemiology, Faculty of Epidemiology and Population Health, London School of Hygiene & Tropical Medicine, London, UK
- Centre for Mathematical Modelling of Infectious Diseases, London School of Hygiene & Tropical Medicine, London, UK
| | - Naomi M. Fuller
- Department of Infectious Disease Epidemiology, Faculty of Epidemiology and Population Health, London School of Hygiene & Tropical Medicine, London, UK
- Centre for Mathematical Modelling of Infectious Diseases, London School of Hygiene & Tropical Medicine, London, UK
| | | | - CMMID COVID-19 Working Group
- Department of Infectious Disease Epidemiology, Faculty of Epidemiology and Population Health, London School of Hygiene & Tropical Medicine, London, UK
- Centre for Mathematical Modelling of Infectious Diseases, London School of Hygiene & Tropical Medicine, London, UK
- GP registrar, Brecon Surgery, Gwent Deanery, UK
| | - Sebastian Funk
- Department of Infectious Disease Epidemiology, Faculty of Epidemiology and Population Health, London School of Hygiene & Tropical Medicine, London, UK
- Centre for Mathematical Modelling of Infectious Diseases, London School of Hygiene & Tropical Medicine, London, UK
| | - Gwenan M. Knight
- Department of Infectious Disease Epidemiology, Faculty of Epidemiology and Population Health, London School of Hygiene & Tropical Medicine, London, UK
- Centre for Mathematical Modelling of Infectious Diseases, London School of Hygiene & Tropical Medicine, London, UK
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Spinelli FR, Ceccarelli F, Di Franco M, Conti F. Response to 'Is there a future for hydroxychloroquine/chloroquine in prevention of SARS-CoV-2 infection (COVID-19)?' by Moiseev et al. Ann Rheum Dis 2020; 80:e20. [PMID: 32345618 DOI: 10.1136/annrheumdis-2020-217636] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2020] [Revised: 04/23/2020] [Accepted: 04/23/2020] [Indexed: 12/12/2022]
Affiliation(s)
- Francesca Romana Spinelli
- Dipartimento di Scienze Cliniche, Internistiche, Anestesiologiche e Cardiovascolari-Reumatologia, Sapienza University of Rome, Roma, Italy
| | - Fulvia Ceccarelli
- Dipartimento di Scienze Cliniche, Internistiche, Anestesiologiche e Cardiovascolari-Reumatologia, Sapienza University of Rome, Roma, Italy
| | - Manuela Di Franco
- Dipartimento di Scienze Cliniche, Internistiche, Anestesiologiche e Cardiovascolari-Reumatologia, Sapienza University of Rome, Roma, Italy
| | - Fabrizio Conti
- Dipartimento di Scienze Cliniche, Internistiche, Anestesiologiche e Cardiovascolari-Reumatologia, Sapienza University of Rome, Roma, Italy
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90
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Affiliation(s)
- Antonio Crisafulli
- Department of Medical Sciences and Public Health, University of Cagliari, Cagliari, Italy
| | - Pasquale Pagliaro
- Department of Clinical and Biological Science, University of Torino, Torino, Italy
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91
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Ansumali S, Kaushal S, Kumar A, Prakash MK, Vidyasagar M. Modelling a pandemic with asymptomatic patients, impact of lockdown and herd immunity, with applications to SARS-CoV-2. ANNUAL REVIEWS IN CONTROL 2020; 50:432-447. [PMID: 33071595 PMCID: PMC7546280 DOI: 10.1016/j.arcontrol.2020.10.003] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2020] [Revised: 09/30/2020] [Accepted: 10/05/2020] [Indexed: 05/15/2023]
Abstract
The SARS-CoV-2 is a type of coronavirus that has caused the pandemic known as the Coronavirus Disease of 2019, or COVID-19. In traditional epidemiological models such as SEIR (Susceptible, Exposed, Infected, Removed), the exposed group E does not infect the susceptible group S. A distinguishing feature of COVID-19 is that, unlike with previous viral diseases, there is a distinct "asymptomatic" group A, which does not show any symptoms, but can nevertheless infect others, at the same rate as infected symptomatic patients. This situation is captured in a model known as SAIR (Susceptible, Asymptomatic, Infected, Removed), introduced in Robinson and Stillianakis (2013). The dynamical behavior of the SAIR model is quite different from that of the SEIR model. In this paper, we use Lyapunov theory to establish the global asymptotic stabililty of the SAIR model, both without and with vital dynamics. Then we develop compartmental SAIR models to cater to the migration of population across geographic regions, and once again establish global asymptotic stability. Next, we go beyond long-term asymptotic analysis and present methods for estimating the parameters in the SAIR model. We apply these estimation methods to data from several countries including India, and demonstrate that the predicted trajectories of the disease closely match actual data. We show that "herd immunity" (defined as the time when the number of infected persons is maximum) can be achieved when the total of infected, symptomatic and asymptomatic persons is as low as 25% of the population. Previous estimates are typically 50% or higher. We also conclude that "lockdown" as a way of greatly reducing inter-personal contact has been very effective in checking the progress of the disease.
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Affiliation(s)
- Santosh Ansumali
- Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore, India
| | - Shaurya Kaushal
- Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore, India
| | - Aloke Kumar
- Indian Institute of Science, Bangalore, India
| | - Meher K Prakash
- Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore, India
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