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For: del Prete MJ, Vernal R, Dolznig H, Müllner EW, Garcia-Sanz JA. Isolation of polysome-bound mRNA from solid tissues amenable for RT-PCR and profiling experiments. RNA 2007;13:414-21. [PMID: 17237355 PMCID: PMC1800518 DOI: 10.1261/rna.79407] [Citation(s) in RCA: 75] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Number Cited by Other Article(s)
51
An mRNA-derived noncoding RNA targets and regulates the ribosome. Mol Cell 2014;54:147-155. [PMID: 24685157 PMCID: PMC3988847 DOI: 10.1016/j.molcel.2014.02.024] [Citation(s) in RCA: 63] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2013] [Revised: 01/26/2014] [Accepted: 02/12/2014] [Indexed: 12/02/2022]
52
Deng X, Bashandy H, Ainasoja M, Kontturi J, Pietiäinen M, Laitinen RAE, Albert VA, Valkonen JPT, Elomaa P, Teeri TH. Functional diversification of duplicated chalcone synthase genes in anthocyanin biosynthesis of Gerbera hybrida. THE NEW PHYTOLOGIST 2014;201:1469-1483. [PMID: 24266452 DOI: 10.1111/nph.12610] [Citation(s) in RCA: 84] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2013] [Accepted: 10/17/2013] [Indexed: 05/19/2023]
53
Ingolia NT, Brar GA, Rouskin S, McGeachy AM, Weissman JS. Genome-wide annotation and quantitation of translation by ribosome profiling. CURRENT PROTOCOLS IN MOLECULAR BIOLOGY 2014;Chapter 4:4.18.1-4.18.19. [PMID: 23821443 DOI: 10.1002/0471142727.mb0418s103] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
54
Grimes BT, Sisay AK, Carroll HD, Cahoon AB. Deep sequencing of the tobacco mitochondrial transcriptome reveals expressed ORFs and numerous editing sites outside coding regions. BMC Genomics 2014;15:31. [PMID: 24433288 PMCID: PMC3898247 DOI: 10.1186/1471-2164-15-31] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2013] [Accepted: 01/13/2014] [Indexed: 11/24/2022]  Open
55
Shimazu T, Borjigin L, Katayama Y, Li M, Satoh T, Watanabe K, Kitazawa H, Roh SG, Aso H, Kazuo K, Suda Y, Sakuma A, Nakajo M, Suzuki K. Genetic selection for resistance to mycoplasmal pneumonia of swine (MPS) in the Landrace line influences the expression of soluble factors in blood after MPS vaccine sensitization. Anim Sci J 2013;85:365-73. [PMID: 24329865 DOI: 10.1111/asj.12158] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2013] [Accepted: 09/04/2013] [Indexed: 11/29/2022]
56
Kim J, Lee JN, Ye J, Hao R, DeBose-Boyd R, Ye J. Sufficient production of geranylgeraniol is required to maintain endotoxin tolerance in macrophages. J Lipid Res 2013;54:3430-7. [PMID: 24062519 PMCID: PMC3826689 DOI: 10.1194/jlr.m042549] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2013] [Revised: 09/19/2013] [Indexed: 12/19/2022]  Open
57
Yogev O, Williams VC, Hinits Y, Hughes SM. eIF4EBP3L acts as a gatekeeper of TORC1 in activity-dependent muscle growth by specifically regulating Mef2ca translational initiation. PLoS Biol 2013;11:e1001679. [PMID: 24143132 PMCID: PMC3797031 DOI: 10.1371/journal.pbio.1001679] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2013] [Accepted: 09/04/2013] [Indexed: 01/12/2023]  Open
58
Wang F, Xu Z, Zhou J, Lo WS, Lau CF, Nangle LA, Yang XL, Zhang M, Schimmel P. Regulated capture by exosomes of mRNAs for cytoplasmic tRNA synthetases. J Biol Chem 2013;288:29223-8. [PMID: 24003230 PMCID: PMC3795223 DOI: 10.1074/jbc.c113.490599] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2013] [Revised: 08/15/2013] [Indexed: 01/08/2023]  Open
59
Yángüez E, Castro-Sanz AB, Fernández-Bautista N, Oliveros JC, Castellano MM. Analysis of genome-wide changes in the translatome of Arabidopsis seedlings subjected to heat stress. PLoS One 2013;8:e71425. [PMID: 23977042 PMCID: PMC3747205 DOI: 10.1371/journal.pone.0071425] [Citation(s) in RCA: 75] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2013] [Accepted: 07/04/2013] [Indexed: 11/18/2022]  Open
60
Colak D, Ji SJ, Porse BT, Jaffrey SR. Regulation of axon guidance by compartmentalized nonsense-mediated mRNA decay. Cell 2013;153:1252-65. [PMID: 23746841 PMCID: PMC3685487 DOI: 10.1016/j.cell.2013.04.056] [Citation(s) in RCA: 150] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2012] [Revised: 03/05/2013] [Accepted: 04/30/2013] [Indexed: 12/13/2022]
61
Shimazu T, Borjigin L, Katayama Y, Li M, Satoh T, Watanabe K, Kitazawa H, Roh SG, Aso H, Katoh K, Suda Y, Sakuma A, Nakajo M, Suzuki K. Immunological characterization of peripheral blood leukocytes using vaccine for mycoplasmal pneumonia of swine (MPS) in swine line selected for resistance to MPS. Anim Sci J 2013;84:683-92. [PMID: 23607374 DOI: 10.1111/asj.12058] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2012] [Accepted: 01/21/2013] [Indexed: 01/22/2023]
62
Takahashi T, Suzuki H, Imai T, Shibata S, Tabuchi Y, Tsuchimoto K, Okano H, Hibi T. Musashi-1 post-transcriptionally enhances phosphotyrosine-binding domain-containing m-Numb protein expression in regenerating gastric mucosa. PLoS One 2013;8:e53540. [PMID: 23308249 PMCID: PMC3537613 DOI: 10.1371/journal.pone.0053540] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2012] [Accepted: 11/30/2012] [Indexed: 01/12/2023]  Open
63
The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments. Nat Protoc 2012;7:1534-50. [PMID: 22836135 DOI: 10.1038/nprot.2012.086] [Citation(s) in RCA: 944] [Impact Index Per Article: 72.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
64
López-Pelaéz M, Fumagalli S, Sanz C, Herrero C, Guerra S, Fernandez M, Alemany S. Cot/tpl2-MKK1/2-Erk1/2 controls mTORC1-mediated mRNA translation in Toll-like receptor-activated macrophages. Mol Biol Cell 2012;23:2982-92. [PMID: 22675026 PMCID: PMC3408424 DOI: 10.1091/mbc.e12-02-0135] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]  Open
65
He Q, Peng J, Yan F, Lin L, Lu Y, Zheng H, Chen H, Chen J. Intron retention and 3'-UTR analysis of Arabidopsis Dicer-like 2 transcripts. Mol Biol Rep 2012;39:3271-80. [PMID: 21698366 DOI: 10.1007/s11033-011-1095-5] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2010] [Accepted: 06/15/2011] [Indexed: 12/24/2022]
66
Ribosomal deficiencies in Diamond-Blackfan anemia impair translation of transcripts essential for differentiation of murine and human erythroblasts. Blood 2011;119:262-72. [PMID: 22058113 DOI: 10.1182/blood-2011-06-358200] [Citation(s) in RCA: 139] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
67
Thornley JA, Trask HW, Ringelberg CS, Ridley CJA, Wang S, Sal-Lari RC, Moore JH, Korc M, Tomlinson CR. SMAD4-dependent polysome RNA recruitment in human pancreatic cancer cells. Mol Carcinog 2011;51:771-82. [PMID: 22965423 DOI: 10.1002/mc.20845] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2011] [Revised: 06/29/2011] [Accepted: 07/22/2011] [Indexed: 11/08/2022]
68
Nicola JP, Nazar M, Serrano-Nascimento C, Goulart-Silva F, Sobrero G, Testa G, Nunes MT, Muñoz L, Miras M, Masini-Repiso AM. Iodide transport defect: functional characterization of a novel mutation in the Na+/I- symporter 5'-untranslated region in a patient with congenital hypothyroidism. J Clin Endocrinol Metab 2011;96:E1100-7. [PMID: 21565787 DOI: 10.1210/jc.2011-0349] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/12/2023]
69
de Lucas-Cerrillo AM, Maldifassi MC, Arnalich F, Renart J, Atienza G, Serantes R, Cruces J, Sánchez-Pacheco A, Andrés-Mateos E, Montiel C. Function of partially duplicated human α77 nicotinic receptor subunit CHRFAM7A gene: potential implications for the cholinergic anti-inflammatory response. J Biol Chem 2010;286:594-606. [PMID: 21047781 DOI: 10.1074/jbc.m110.180067] [Citation(s) in RCA: 104] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]  Open
70
Pond AC, Herschkowitz JI, Schwertfeger KL, Welm B, Zhang Y, York B, Cardiff RD, Hilsenbeck S, Perou CM, Creighton CJ, Lloyd RE, Rosen JM. Fibroblast growth factor receptor signaling dramatically accelerates tumorigenesis and enhances oncoprotein translation in the mouse mammary tumor virus-Wnt-1 mouse model of breast cancer. Cancer Res 2010;70:4868-79. [PMID: 20501844 PMCID: PMC3005245 DOI: 10.1158/0008-5472.can-09-4404] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
71
Ceppi M, Clavarino G, Gatti E, Schmidt EK, de Gassart A, Blankenship D, Ogola G, Banchereau J, Chaussabel D, Pierre P. Ribosomal protein mRNAs are translationally-regulated during human dendritic cells activation by LPS. Immunome Res 2009;5:5. [PMID: 19943945 PMCID: PMC2788525 DOI: 10.1186/1745-7580-5-5] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2009] [Accepted: 11/27/2009] [Indexed: 11/10/2022]  Open
72
Cai X, Yuan ZM. Stochastic modeling and simulation of the p53-MDM2/MDMX loop. J Comput Biol 2009;16:917-33. [PMID: 19580521 PMCID: PMC3148126 DOI: 10.1089/cmb.2008.0231] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]  Open
73
Wu Q, Zhang L, Law PY, Wei LN, Loh HH. Long-term morphine treatment decreases the association of mu-opioid receptor (MOR1) mRNA with polysomes through miRNA23b. Mol Pharmacol 2009;75:744-50. [PMID: 19144786 PMCID: PMC2684920 DOI: 10.1124/mol.108.053462] [Citation(s) in RCA: 68] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2008] [Accepted: 01/14/2009] [Indexed: 11/22/2022]  Open
74
Martín-Villar E, Yurrita MM, Fernández-Muñoz B, Quintanilla M, Renart J. Regulation of podoplanin/PA2.26 antigen expression in tumour cells. Involvement of calpain-mediated proteolysis. Int J Biochem Cell Biol 2008;41:1421-9. [PMID: 19146981 DOI: 10.1016/j.biocel.2008.12.010] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2008] [Revised: 12/05/2008] [Accepted: 12/14/2008] [Indexed: 01/20/2023]
75
Vernal R, Leon R, Herrera D, Garcia-Sanz JA, Silva A, Sanz M. Variability in the response of human dendritic cells stimulated withPorphyromonas gingivalisorAggregatibacter actinomycetemcomitans. J Periodontal Res 2008;43:689-97. [DOI: 10.1111/j.1600-0765.2007.01073.x] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
76
Wu Q, Law PY, Wei LN, Loh HH. Post-transcriptional regulation of mouse mu opioid receptor (MOR1) via its 3' untranslated region: a role for microRNA23b. FASEB J 2008;22:4085-95. [PMID: 18716031 PMCID: PMC2614608 DOI: 10.1096/fj.08-108175] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2008] [Accepted: 07/24/2008] [Indexed: 11/11/2022]
77
Expression of proinflammatory cytokines in osteoarthritis of the temporomandibular joint. Arch Oral Biol 2008;53:910-5. [DOI: 10.1016/j.archoralbio.2008.04.004] [Citation(s) in RCA: 95] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2008] [Revised: 03/20/2008] [Accepted: 04/17/2008] [Indexed: 02/03/2023]
78
Ebralidze AK, Guibal FC, Steidl U, Zhang P, Lee S, Bartholdy B, Jorda MA, Petkova V, Rosenbauer F, Huang G, Dayaram T, Klupp J, O'Brien KB, Will B, Hoogenkamp M, Borden KLB, Bonifer C, Tenen DG. PU.1 expression is modulated by the balance of functional sense and antisense RNAs regulated by a shared cis-regulatory element. Genes Dev 2008;22:2085-92. [PMID: 18676813 DOI: 10.1101/gad.1654808] [Citation(s) in RCA: 153] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
79
Shimokawa T, Tostar U, Lauth M, Palaniswamy R, Kasper M, Toftgård R, Zaphiropoulos PG. Novel human glioma-associated oncogene 1 (GLI1) splice variants reveal distinct mechanisms in the terminal transduction of the hedgehog signal. J Biol Chem 2008;283:14345-54. [PMID: 18378682 PMCID: PMC2386930 DOI: 10.1074/jbc.m800299200] [Citation(s) in RCA: 64] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2008] [Revised: 03/21/2008] [Indexed: 01/12/2023]  Open
80
Alternative RNA splicing produces multiple forms of c-Myb with unique transcriptional activities. Mol Cell Biol 2008;28:2091-101. [PMID: 18195038 DOI: 10.1128/mcb.01870-07] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
81
Diaz-Guerra E, Vernal R, del Prete MJ, Silva A, Garcia-Sanz JA. CCL2 Inhibits the Apoptosis Program Induced by Growth Factor Deprivation, Rescuing Functional T Cells. THE JOURNAL OF IMMUNOLOGY 2007;179:7352-7. [DOI: 10.4049/jimmunol.179.11.7352] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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