• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (5075508)   Today's Articles (21)
For: Breaker RR. Prospects for riboswitch discovery and analysis. Mol Cell 2011;43:867-79. [PMID: 21925376 DOI: 10.1016/j.molcel.2011.08.024] [Citation(s) in RCA: 385] [Impact Index Per Article: 27.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2011] [Revised: 08/15/2011] [Accepted: 08/22/2011] [Indexed: 11/23/2022]
Number Cited by Other Article(s)
101
Dar D, Sorek R. High-resolution RNA 3'-ends mapping of bacterial Rho-dependent transcripts. Nucleic Acids Res 2019;46:6797-6805. [PMID: 29669055 PMCID: PMC6061677 DOI: 10.1093/nar/gky274] [Citation(s) in RCA: 71] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2018] [Accepted: 04/04/2018] [Indexed: 01/20/2023]  Open
102
Nikolaev Y, Ripin N, Soste M, Picotti P, Iber D, Allain FHT. Systems NMR: single-sample quantification of RNA, proteins and metabolites for biomolecular network analysis. Nat Methods 2019;16:743-749. [PMID: 31363225 PMCID: PMC6837886 DOI: 10.1038/s41592-019-0495-7] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2018] [Accepted: 06/17/2019] [Indexed: 12/14/2022]
103
Matsumoto S, Caliskan N, Rodnina MV, Murata A, Nakatani K. Small synthetic molecule-stabilized RNA pseudoknot as an activator for -1 ribosomal frameshifting. Nucleic Acids Res 2019;46:8079-8089. [PMID: 30085309 PMCID: PMC6144811 DOI: 10.1093/nar/gky689] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2017] [Accepted: 07/31/2018] [Indexed: 12/02/2022]  Open
104
Dwidar M, Seike Y, Kobori S, Whitaker C, Matsuura T, Yokobayashi Y. Programmable Artificial Cells Using Histamine-Responsive Synthetic Riboswitch. J Am Chem Soc 2019;141:11103-11114. [PMID: 31241330 DOI: 10.1021/jacs.9b03300] [Citation(s) in RCA: 72] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
105
Pavlova N, Kaloudas D, Penchovsky R. Riboswitch distribution, structure, and function in bacteria. Gene 2019;708:38-48. [PMID: 31128223 DOI: 10.1016/j.gene.2019.05.036] [Citation(s) in RCA: 70] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2019] [Revised: 05/12/2019] [Accepted: 05/20/2019] [Indexed: 10/26/2022]
106
Comparative Transcriptomic Profiling of Yersinia enterocolitica O:3 and O:8 Reveals Major Expression Differences of Fitness- and Virulence-Relevant Genes Indicating Ecological Separation. mSystems 2019;4:mSystems00239-18. [PMID: 31020044 PMCID: PMC6478967 DOI: 10.1128/msystems.00239-18] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2018] [Accepted: 02/27/2019] [Indexed: 01/16/2023]  Open
107
Atilho RM, Mirihana Arachchilage G, Greenlee EB, Knecht KM, Breaker RR. A bacterial riboswitch class for the thiamin precursor HMP-PP employs a terminator-embedded aptamer. eLife 2019;8:45210. [PMID: 30950790 PMCID: PMC6478431 DOI: 10.7554/elife.45210] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2019] [Accepted: 04/04/2019] [Indexed: 12/29/2022]  Open
108
Stav S, Atilho RM, Mirihana Arachchilage G, Nguyen G, Higgs G, Breaker RR. Genome-wide discovery of structured noncoding RNAs in bacteria. BMC Microbiol 2019;19:66. [PMID: 30902049 PMCID: PMC6429828 DOI: 10.1186/s12866-019-1433-7] [Citation(s) in RCA: 37] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2018] [Accepted: 03/07/2019] [Indexed: 12/15/2022]  Open
109
Eubanks CS, Zhao B, Patwardhan NN, Thompson RD, Zhang Q, Hargrove AE. Visualizing RNA Conformational Changes via Pattern Recognition of RNA by Small Molecules. J Am Chem Soc 2019;141:5692-5698. [DOI: 10.1021/jacs.8b09665] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
110
Atilho RM, Perkins KR, Breaker RR. Rare variants of the FMN riboswitch class in Clostridium difficile and other bacteria exhibit altered ligand specificity. RNA (NEW YORK, N.Y.) 2019;25:23-34. [PMID: 30287481 PMCID: PMC6298564 DOI: 10.1261/rna.067975.118] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2018] [Accepted: 10/02/2018] [Indexed: 05/10/2023]
111
Zhao JP, Zhu H, Guo XP, Sun YC. AU-Rich Long 3' Untranslated Region Regulates Gene Expression in Bacteria. Front Microbiol 2018;9:3080. [PMID: 30619162 PMCID: PMC6299119 DOI: 10.3389/fmicb.2018.03080] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2018] [Accepted: 11/29/2018] [Indexed: 12/02/2022]  Open
112
Li X, Chen F, Xiao J, Chou SH, Li X, He J. Genome-wide Analysis of the Distribution of Riboswitches and Function Analyses of the Corresponding Downstream Genes in Prokaryotes. Curr Bioinform 2018. [DOI: 10.2174/1574893613666180423145812] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
113
Warrier I, Ram-Mohan N, Zhu Z, Hazery A, Echlin H, Rosch J, Meyer MM, van Opijnen T. The Transcriptional landscape of Streptococcus pneumoniae TIGR4 reveals a complex operon architecture and abundant riboregulation critical for growth and virulence. PLoS Pathog 2018;14:e1007461. [PMID: 30517198 PMCID: PMC6296669 DOI: 10.1371/journal.ppat.1007461] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2018] [Revised: 12/17/2018] [Accepted: 11/07/2018] [Indexed: 11/21/2022]  Open
114
Advancement of Metabolic Engineering Assisted by Synthetic Biology. Catalysts 2018. [DOI: 10.3390/catal8120619] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]  Open
115
Breaker RR. Riboswitches and Translation Control. Cold Spring Harb Perspect Biol 2018;10:cshperspect.a032797. [PMID: 29844057 DOI: 10.1101/cshperspect.a032797] [Citation(s) in RCA: 145] [Impact Index Per Article: 20.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
116
Knittel V, Vollmer I, Volk M, Dersch P. Discovering RNA-Based Regulatory Systems for Yersinia Virulence. Front Cell Infect Microbiol 2018;8:378. [PMID: 30460205 PMCID: PMC6232918 DOI: 10.3389/fcimb.2018.00378] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2018] [Accepted: 10/05/2018] [Indexed: 12/26/2022]  Open
117
Goodson JR, Winkler WC. Processive Antitermination. Microbiol Spectr 2018;6:10.1128/microbiolspec.RWR-0031-2018. [PMID: 30191803 PMCID: PMC7323004 DOI: 10.1128/microbiolspec.rwr-0031-2018] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2018] [Indexed: 01/27/2023]  Open
118
Peselis A, Serganov A. ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands. Nat Chem Biol 2018;14:887-894. [PMID: 30120360 PMCID: PMC6263941 DOI: 10.1038/s41589-018-0114-4] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2018] [Accepted: 07/02/2018] [Indexed: 12/20/2022]
119
Synthetic Gene Regulation in Cyanobacteria. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2018;1080:317-355. [DOI: 10.1007/978-981-13-0854-3_13] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
120
Kesherwani M, N H V K, Velmurugan D. Conformational Dynamics of thiM Riboswitch To Understand the Gene Regulation Mechanism Using Markov State Modeling and the Residual Fluctuation Network Approach. J Chem Inf Model 2018;58:1638-1651. [PMID: 29939019 DOI: 10.1021/acs.jcim.8b00155] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
121
Zhang JL, Wang D, Liang YW, Zhong WY, Ming ZH, Tang DJ, Tang JL. The Gram-negative phytopathogen Xanthomonas campestris pv. campestris employs a 5'UTR as a feedback controller to regulate methionine biosynthesis. MICROBIOLOGY-SGM 2018;164:1146-1155. [PMID: 30024369 PMCID: PMC6230763 DOI: 10.1099/mic.0.000690] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
122
Sun T, Li S, Song X, Diao J, Chen L, Zhang W. Toolboxes for cyanobacteria: Recent advances and future direction. Biotechnol Adv 2018;36:1293-1307. [DOI: 10.1016/j.biotechadv.2018.04.007] [Citation(s) in RCA: 78] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2018] [Revised: 04/09/2018] [Accepted: 04/26/2018] [Indexed: 12/20/2022]
123
Schwenk S, Moores A, Nobeli I, McHugh TD, Arnvig KB. Cell-wall synthesis and ribosome maturation are co-regulated by an RNA switch in Mycobacterium tuberculosis. Nucleic Acids Res 2018;46:5837-5849. [PMID: 29618088 PMCID: PMC6009663 DOI: 10.1093/nar/gky226] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2017] [Revised: 03/11/2018] [Accepted: 03/15/2018] [Indexed: 01/16/2023]  Open
124
Nichols PJ, Henen MA, Born A, Strotz D, Güntert P, Vögeli B. High-resolution small RNA structures from exact nuclear Overhauser enhancement measurements without additional restraints. Commun Biol 2018;1:61. [PMID: 30271943 PMCID: PMC6123705 DOI: 10.1038/s42003-018-0067-x] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2018] [Accepted: 05/09/2018] [Indexed: 11/29/2022]  Open
125
Abduljalil JM. Bacterial riboswitches and RNA thermometers: Nature and contributions to pathogenesis. Noncoding RNA Res 2018;3:54-63. [PMID: 30159440 PMCID: PMC6096418 DOI: 10.1016/j.ncrna.2018.04.003] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2018] [Revised: 04/10/2018] [Accepted: 04/10/2018] [Indexed: 12/31/2022]  Open
126
Xie H, Zhan H, Gao Q, Li J, Zhou Q, Chen Z, Liu Y, Ding M, Xiao H, Liu Y, Huang W, Cai Z. Synthetic artificial "long non-coding RNAs" targeting oncogenic microRNAs and transcriptional factors inhibit malignant phenotypes of bladder cancer cells. Cancer Lett 2018;422:94-106. [PMID: 29501702 DOI: 10.1016/j.canlet.2018.02.038] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2017] [Revised: 02/13/2018] [Accepted: 02/26/2018] [Indexed: 02/05/2023]
127
Cai Y, Xia M, Dong H, Qian Y, Zhang T, Zhu B, Wu J, Zhang D. Engineering a vitamin B12 high-throughput screening system by riboswitch sensor in Sinorhizobium meliloti. BMC Biotechnol 2018;18:27. [PMID: 29751749 PMCID: PMC5948670 DOI: 10.1186/s12896-018-0441-2] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2017] [Accepted: 04/30/2018] [Indexed: 12/23/2022]  Open
128
Inuzuka S, Kakizawa H, Nishimura KI, Naito T, Miyazaki K, Furuta H, Matsumura S, Ikawa Y. Recognition of cyclic-di-GMP by a riboswitch conducts translational repression through masking the ribosome-binding site distant from the aptamer domain. Genes Cells 2018;23:435-447. [PMID: 29693296 DOI: 10.1111/gtc.12586] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2017] [Accepted: 03/18/2018] [Indexed: 12/31/2022]
129
Findeiß S, Hammer S, Wolfinger MT, Kühnl F, Flamm C, Hofacker IL. In silico design of ligand triggered RNA switches. Methods 2018;143:90-101. [PMID: 29660485 DOI: 10.1016/j.ymeth.2018.04.003] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2017] [Revised: 03/06/2018] [Accepted: 04/06/2018] [Indexed: 02/06/2023]  Open
130
Kraft CE, Angert ER. Competition for vitamin B1 (thiamin) structures numerous ecological interactions. QUARTERLY REVIEW OF BIOLOGY 2018;92:151-68. [PMID: 29562121 DOI: 10.1086/692168] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
131
Phylogenomic and comparative analysis of the distribution and regulatory patterns of TPP riboswitches in fungi. Sci Rep 2018;8:5563. [PMID: 29615754 PMCID: PMC5882874 DOI: 10.1038/s41598-018-23900-7] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2017] [Accepted: 03/20/2018] [Indexed: 01/01/2023]  Open
132
Koirala D, Shelke SA, Dupont M, Ruiz S, DasGupta S, Bailey LJ, Benner SA, Piccirilli JA. Affinity maturation of a portable Fab-RNA module for chaperone-assisted RNA crystallography. Nucleic Acids Res 2018;46:2624-2635. [PMID: 29309709 PMCID: PMC5861428 DOI: 10.1093/nar/gkx1292] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2017] [Revised: 12/13/2017] [Accepted: 12/28/2017] [Indexed: 12/13/2022]  Open
133
Rizvi NF, Howe JA, Nahvi A, Klein DJ, Fischmann TO, Kim HY, McCoy MA, Walker SS, Hruza A, Richards MP, Chamberlin C, Saradjian P, Butko MT, Mercado G, Burchard J, Strickland C, Dandliker PJ, Smith GF, Nickbarg EB. Discovery of Selective RNA-Binding Small Molecules by Affinity-Selection Mass Spectrometry. ACS Chem Biol 2018;13:820-831. [PMID: 29412640 DOI: 10.1021/acschembio.7b01013] [Citation(s) in RCA: 68] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
134
Kan J, An L, Wu Y, Long J, Song L, Fang R, Jia Y. A dual role for proline iminopeptidase in the regulation of bacterial motility and host immunity. MOLECULAR PLANT PATHOLOGY 2018;19:2011-2024. [PMID: 29517846 PMCID: PMC6638124 DOI: 10.1111/mpp.12677] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2017] [Revised: 03/06/2018] [Accepted: 03/06/2018] [Indexed: 05/07/2023]
135
Sherlock ME, Sudarsan N, Stav S, Breaker RR. Tandem riboswitches form a natural Boolean logic gate to control purine metabolism in bacteria. eLife 2018;7:e33908. [PMID: 29504937 PMCID: PMC5912903 DOI: 10.7554/elife.33908] [Citation(s) in RCA: 55] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2017] [Accepted: 03/04/2018] [Indexed: 12/28/2022]  Open
136
Greenlee EB, Stav S, Atilho RM, Brewer KI, Harris KA, Malkowski SN, Mirihana Arachchilage G, Perkins KR, Sherlock ME, Breaker RR. Challenges of ligand identification for the second wave of orphan riboswitch candidates. RNA Biol 2018;15:377-390. [PMID: 29135333 PMCID: PMC5927730 DOI: 10.1080/15476286.2017.1403002] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2017] [Revised: 10/25/2017] [Accepted: 10/30/2017] [Indexed: 12/18/2022]  Open
137
Singh P, Kumar N, Jethva M, Yadav S, Kumari P, Thakur A, Kushwaha HR. Riboswitch regulation in cyanobacteria is independent of their habitat adaptations. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2018;24:315-324. [PMID: 29515325 PMCID: PMC5834989 DOI: 10.1007/s12298-018-0504-9] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2017] [Revised: 12/13/2017] [Accepted: 01/02/2018] [Indexed: 01/17/2024]
138
Churkin A, Retwitzer MD, Reinharz V, Ponty Y, Waldispühl J, Barash D. Design of RNAs: comparing programs for inverse RNA folding. Brief Bioinform 2018;19:350-358. [PMID: 28049135 PMCID: PMC6018860 DOI: 10.1093/bib/bbw120] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]  Open
139
Ethanolamine Utilization in Bacteria. mBio 2018;9:mBio.00066-18. [PMID: 29463652 PMCID: PMC5821096 DOI: 10.1128/mbio.00066-18] [Citation(s) in RCA: 104] [Impact Index Per Article: 14.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
140
Mirihana Arachchilage G, Sherlock ME, Weinberg Z, Breaker RR. SAM-VI RNAs selectively bind S-adenosylmethionine and exhibit similarities to SAM-III riboswitches. RNA Biol 2018;15:371-378. [PMID: 29106323 DOI: 10.1080/15476286.2017.1399232] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
141
Moon MH, Hilimire TA, Sanders AM, Schneekloth JS. Measuring RNA-Ligand Interactions with Microscale Thermophoresis. Biochemistry 2018;57:4638-4643. [PMID: 29327580 DOI: 10.1021/acs.biochem.7b01141] [Citation(s) in RCA: 67] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
142
Gong S, Wang Y, Wang Z, Sun Y, Zhang W. Folding behaviors of purine riboswitch aptamers. ACTA ACUST UNITED AC 2018. [DOI: 10.1007/s11859-018-1292-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
143
Studying Parasite Gene Function and Interaction Through Ribozymes and Riboswitches Design Mechanism. Synth Biol (Oxf) 2018. [DOI: 10.1007/978-981-10-8693-9_4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]  Open
144
Li X, Mei H, Chen F, Tang Q, Yu Z, Cao X, Andongma BT, Chou SH, He J. Transcriptome Landscape of Mycobacterium smegmatis. Front Microbiol 2017;8:2505. [PMID: 29326668 PMCID: PMC5741613 DOI: 10.3389/fmicb.2017.02505] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2017] [Accepted: 12/01/2017] [Indexed: 11/13/2022]  Open
145
Genetic regulation mechanism of the yjdF riboswitch. J Theor Biol 2017;439:152-159. [PMID: 29223402 DOI: 10.1016/j.jtbi.2017.12.007] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2017] [Revised: 12/05/2017] [Accepted: 12/06/2017] [Indexed: 01/08/2023]
146
Tandon P, Jin Q, Huang L. A promising approach to enhance microalgae productivity by exogenous supply of vitamins. Microb Cell Fact 2017;16:219. [PMID: 29183381 PMCID: PMC5706373 DOI: 10.1186/s12934-017-0834-2] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2017] [Accepted: 11/21/2017] [Indexed: 12/22/2022]  Open
147
Stamatopoulou V, Apostolidi M, Li S, Lamprinou K, Papakyriakou A, Zhang J, Stathopoulos C. Direct modulation of T-box riboswitch-controlled transcription by protein synthesis inhibitors. Nucleic Acids Res 2017;45:10242-10258. [PMID: 28973457 PMCID: PMC5622331 DOI: 10.1093/nar/gkx663] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2017] [Accepted: 07/18/2017] [Indexed: 11/14/2022]  Open
148
Arif A, Yao P, Terenzi F, Jia J, Ray PS, Fox PL. The GAIT translational control system. WILEY INTERDISCIPLINARY REVIEWS-RNA 2017;9. [PMID: 29152905 PMCID: PMC5815886 DOI: 10.1002/wrna.1441] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/31/2017] [Revised: 07/12/2017] [Accepted: 07/31/2017] [Indexed: 01/19/2023]
149
Gong S, Wang Y, Wang Z, Zhang W. Computational Methods for Modeling Aptamers and Designing Riboswitches. Int J Mol Sci 2017;18:E2442. [PMID: 29149090 PMCID: PMC5713409 DOI: 10.3390/ijms18112442] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2017] [Revised: 11/12/2017] [Accepted: 11/14/2017] [Indexed: 02/04/2023]  Open
150
Mok WWK, Brynildsen MP. An Orphan Riboswitch Unveils Guanidine Regulation in Bacteria. Mol Cell 2017;65:205-206. [PMID: 28107646 DOI: 10.1016/j.molcel.2017.01.001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
PrevPage 3 of 8 1234578Next
© 2004-2025 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA