1
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Mailhiot S, Mankinen O, Li J, Kharbanda Y, Telkki VV, Urbańczyk M. CAT on MOUSE: Control and automation of temperature for single-sided NMR instruments such as NMR-MOUSE. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2024; 62:252-258. [PMID: 37344254 DOI: 10.1002/mrc.5376] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2023] [Revised: 06/06/2023] [Accepted: 06/08/2023] [Indexed: 06/23/2023]
Abstract
Temperature-dependent experiments are a rapidly growing area of interest for low-field NMR. In this work, we present a new device for wide-range temperature control for single-sided NMR instruments. The presented device, called CAT, is simple to build, inexpensive, and easy to modify to accommodate different samples. We present the capabilities of the device using a freezing temperature study of acetic acid/water mixtures. Additionally, we present the stability of the device over long measurement times. We believe that by introducing such a device with an open-source design, we allow researchers to use it in a wide range of applications and to fully incorporate variable-temperature studies in the world of single-sided instruments.
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Affiliation(s)
| | - Otto Mankinen
- NMR Research Unit, University of Oulu, Oulu, Finland
| | - Jing Li
- NMR Research Unit, University of Oulu, Oulu, Finland
- NIMBE, CEA, CNRS, Université de Paris Saclay, CEA Saclay, Gif-sur-Yvette, France
| | - Yashu Kharbanda
- NMR Research Unit, University of Oulu, Oulu, Finland
- Laboratoire Navier (Ecole des Ponts ParisTech-Université Gustave Eiffel), Champs-sur-Marne, France
| | | | - Mateusz Urbańczyk
- Institute of Physical Chemistry, Polish Academy of Sciences, Warsaw, Poland
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2
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Chen B, Wu L, Chen Y, Fang Z, Huang Y, Yang Y, Lin E, Chen Z. GRIN-toolbox: A versatile and light toolbox for NMR inversion. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2023; 355:107553. [PMID: 37713763 DOI: 10.1016/j.jmr.2023.107553] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Revised: 09/06/2023] [Accepted: 09/07/2023] [Indexed: 09/17/2023]
Abstract
NMR technique serves as a powerful analytical tool with diverse applications in fields such as chemistry, biology, and material science. However, the effectiveness of NMR heavily relies on data post-processing which is often modeled as regularized inverse problem. Recently, we proposed the Generally Regularized INversion (GRIN) algorithm and demonstrated its effectiveness in NMR data processing. GRIN has been integrated as a friendly graphic user interface-based toolbox which was not detailed in the original paper. In this paper, to make GRIN more practically accessible to NMR practitioners, we focus on introducing the usage of GRIN-Toolbox with processing examples and the corresponding processing graphic interfaces, and the user manual is attached as Supplementary Material. GRIN-Toolbox is versatile and lightweight, where various kinds of data processing tasks can be completed with one click, including but not limited to diffusion-ordered spectroscopy processing, magnetic resonance imaging under-sampling reconstruction, Laplace (diffusion or relaxation) NMR inversion, spectrum denoising, etc. In addition, GRIN-Toolbox could be extended to more applications with user-designed inversion models and freely available at https://github.com/EricLin1993/GRIN.
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Affiliation(s)
- Bo Chen
- Department of Electronic Science, Fujian Provincial Key Laboratory of Plasma and Magnetic Resonance, State Key Laboratory of Physical Chemistry of Solid Surfaces, Xiamen University, Xiamen, Fujian 361005, China
| | - Liubin Wu
- Department of Electronic Science, Fujian Provincial Key Laboratory of Plasma and Magnetic Resonance, State Key Laboratory of Physical Chemistry of Solid Surfaces, Xiamen University, Xiamen, Fujian 361005, China
| | - Yida Chen
- Department of Electronic Science, Fujian Provincial Key Laboratory of Plasma and Magnetic Resonance, State Key Laboratory of Physical Chemistry of Solid Surfaces, Xiamen University, Xiamen, Fujian 361005, China
| | - Ze Fang
- Department of Electronic Science, Fujian Provincial Key Laboratory of Plasma and Magnetic Resonance, State Key Laboratory of Physical Chemistry of Solid Surfaces, Xiamen University, Xiamen, Fujian 361005, China
| | - Yuqing Huang
- Department of Electronic Science, Fujian Provincial Key Laboratory of Plasma and Magnetic Resonance, State Key Laboratory of Physical Chemistry of Solid Surfaces, Xiamen University, Xiamen, Fujian 361005, China
| | - Yu Yang
- Department of Electronic Science, Fujian Provincial Key Laboratory of Plasma and Magnetic Resonance, State Key Laboratory of Physical Chemistry of Solid Surfaces, Xiamen University, Xiamen, Fujian 361005, China
| | - Enping Lin
- Department of Electronic Science, Fujian Provincial Key Laboratory of Plasma and Magnetic Resonance, State Key Laboratory of Physical Chemistry of Solid Surfaces, Xiamen University, Xiamen, Fujian 361005, China.
| | - Zhong Chen
- Department of Electronic Science, Fujian Provincial Key Laboratory of Plasma and Magnetic Resonance, State Key Laboratory of Physical Chemistry of Solid Surfaces, Xiamen University, Xiamen, Fujian 361005, China.
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3
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Kharbanda Y, Urbańczyk M, Zhivonitko VV, Mailhiot S, Kettunen MI, Telkki VV. Sensitive, Efficient and Portable Analysis of Molecular Exchange Processes by Hyperpolarized Ultrafast NMR. Angew Chem Int Ed Engl 2022; 61:e202203957. [PMID: 35499690 PMCID: PMC9400989 DOI: 10.1002/anie.202203957] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2022] [Indexed: 11/08/2022]
Abstract
Molecular exchange processes are ubiquitous in nature. Here, we introduce a method to analyze exchange processes by using low-cost, portable, single-sided NMR instruments. The inherent magnetic field inhomogeneity of the single-sided instruments is exploited to achieve diffusion contrast of exchange sites and spatial encoding of 2D data. This so-called ultrafast diffusion exchange spectroscopy method shortens the experiment time by two to four orders of magnitude. Furthermore, because full 2D data are measured in a single scan (in a fraction of a second), the sensitivity of the experiment can be improved by several orders of magnitude using so-called nuclear spin hyperpolarization methods (in this case, dissolution dynamic nuclear polarization). As the first demonstration of the feasibility of the method in various applications, we show that the method enables quantification of intra- and extracellular exchange of water in a yeast cell suspension.
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Affiliation(s)
| | - Mateusz Urbańczyk
- Institute of Physical Chemistry, Polish Academy of Sciences, Warsaw, Poland
| | | | - Sarah Mailhiot
- NMR Research Unit, University of Oulu, Oulu, 90540, Finland
| | - Mikko I Kettunen
- Kuopio Biomedical Imaging Unit, A.I. Virtanen Institute for Molecular Sciences, University of Eastern Finland, Kuopio, Finland
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4
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Kharbanda Y, Urbańczyk M, Zhivonitko VV, Mailhiot S, Kettunen MI, Telkki V. Sensitive, Efficient and Portable Analysis of Molecular Exchange Processes by Hyperpolarized Ultrafast NMR. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202203957] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
| | - Mateusz Urbańczyk
- Institute of Physical Chemistry Polish Academy of Sciences Warsaw Poland
| | | | | | - Mikko I. Kettunen
- Kuopio Biomedical Imaging Unit A.I. Virtanen Institute for Molecular Sciences University of Eastern Finland Kuopio Finland
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5
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Robinson N, May EF, Johns ML. Low-Field Functional Group Resolved Nuclear Spin Relaxation in Mesoporous Silica. ACS APPLIED MATERIALS & INTERFACES 2021; 13:54476-54485. [PMID: 34743514 DOI: 10.1021/acsami.1c13934] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Solid-fluid interactions underpin the efficacy of functional porous materials across a diverse array of chemical reaction and separation processes. However, detailed characterization of interfacial phenomena within such systems is hampered by their optically opaque nature. Motivated by the need to bridge this capability gap, we report low-magnetic-field two-dimensional (2D) 1H nuclear spin relaxation measurements as a noninvasive probe of adsorbate identity and interfacial dynamics, exploring the relaxation characteristics exhibited by liquid hydrocarbon adsorbates confined to a model mesoporous silica. For the first time, we demonstrate the capacity of this approach in distinguishing functional group-specific relaxation phenomena across a diverse range of alcohols and carboxylic acids employed as solvents, reagents, and liquid hydrogen carriers, with distinct relaxation responses assigned to the alkyl and hydroxyl moieties of each confined liquid. Uniquely, this relaxation behavior is shown to correlate with adsorbate acidity, with the observed relationship rationalized on the basis of surface-adsorbate proton-exchange dynamics. Our results demonstrate that nuclear spin relaxation provides a molecular-level perspective on sorbent/sorbate interactions, motivating the exploration of such measurements as a unique probe of adsorbate identity within optically opaque porous media.
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Affiliation(s)
- Neil Robinson
- Department of Chemical Engineering, University of Western Australia, 35 Stirling Highway, Perth, WA 6009, Australia
| | - Eric F May
- Department of Chemical Engineering, University of Western Australia, 35 Stirling Highway, Perth, WA 6009, Australia
| | - Michael L Johns
- Department of Chemical Engineering, University of Western Australia, 35 Stirling Highway, Perth, WA 6009, Australia
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6
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Pietrzak M, Jopa S, Mames A, Urbańczyk M, Woźny M, Ratajczyk T. Recent Progress in Liquid State Electrochemistry Coupled with NMR Spectroscopy. ChemElectroChem 2021. [DOI: 10.1002/celc.202100724] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Mariusz Pietrzak
- Institute of Physical Chemistry Polish Academy of Sciences Kasprzaka 44/52 01-224 Warsaw Poland
| | - Sylwia Jopa
- Faculty of Chemistry University of Warsaw Pasteura 1 02-093 Warsaw Poland
| | - Adam Mames
- Institute of Physical Chemistry Polish Academy of Sciences Kasprzaka 44/52 01-224 Warsaw Poland
| | - Mateusz Urbańczyk
- Institute of Physical Chemistry Polish Academy of Sciences Kasprzaka 44/52 01-224 Warsaw Poland
- Centre of New Technologies University of Warsaw Banacha 2 C 02-097 Warsaw Poland
| | - Mateusz Woźny
- Institute of Organic Chemistry Polish Academy of Sciences Kasprzaka 44/52 01-224 Warsaw Poland
| | - Tomasz Ratajczyk
- Institute of Physical Chemistry Polish Academy of Sciences Kasprzaka 44/52 01-224 Warsaw Poland
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7
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Lin E, Bai Z, Yuan Y, Chen Z, Yang Y, Huang Y, Chen Z. A General Reconstruction Method for Multidimensional Sparse Sampling Nuclear Magnetic Resonance Spectroscopy. J Phys Chem Lett 2021; 12:10622-10630. [PMID: 34699231 DOI: 10.1021/acs.jpclett.1c03063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Multidimensional NMR spectroscopy provides a powerful tool for structure elucidation and dynamic analysis of complex samples, particularly for biological macromolecules. Multidimensional sparse sampling effectively accelerates NMR experiments while an efficient reconstruction method is generally required for unraveling spectra. Various reconstruction methods were proposed for pure Fourier NMR (only involving chemical shifts and J couplings detection). However, reconstruction concerned with Laplace-related NMR (i.e., involving relaxation or diffusion detection) is more challenging due to its ill-posed property. The existing Laplace-related NMR sparse sampling reconstruction methods suffer from poor resolution and possible artifacts in the resulting spectra owing to the pitfalls of the optimization algorithms. Herein, we propose a general approach for fast high-resolution reconstruction of multidimensional sparse sampling NMR, including pure Fourier, mixed Fourier-Laplace, and pure Laplace NMR, benefiting from the comprehensive sparse constraint and effective optimization algorithm and thus showing the promising prospects of multidimensional NMR.
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Affiliation(s)
- Enping Lin
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Department of Electronic Science, Xiamen University, Xiamen, Fujian 361005, China
| | - Zhemin Bai
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Department of Electronic Science, Xiamen University, Xiamen, Fujian 361005, China
| | - Yifei Yuan
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Department of Electronic Science, Xiamen University, Xiamen, Fujian 361005, China
| | - Zhiwei Chen
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Department of Electronic Science, Xiamen University, Xiamen, Fujian 361005, China
| | - Yu Yang
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Department of Electronic Science, Xiamen University, Xiamen, Fujian 361005, China
| | - Yuqing Huang
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Department of Electronic Science, Xiamen University, Xiamen, Fujian 361005, China
| | - Zhong Chen
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Department of Electronic Science, Xiamen University, Xiamen, Fujian 361005, China
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8
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Telkki VV, Urbańczyk M, Zhivonitko V. Ultrafast methods for relaxation and diffusion. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2021; 126-127:101-120. [PMID: 34852922 DOI: 10.1016/j.pnmrs.2021.07.001] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2021] [Revised: 07/07/2021] [Accepted: 07/08/2021] [Indexed: 06/13/2023]
Abstract
Relaxation and diffusion NMR measurements offer an approach to studying rotational and translational motion of molecules non-invasively, and they also provide chemical resolution complementary to NMR spectra. Multidimensional experiments enable the correlation of relaxation and diffusion parameters as well as the observation of molecular exchange phenomena through relaxation or diffusion contrast. This review describes how to accelerate multidimensional relaxation and diffusion measurements significantly through spatial encoding. This so-called ultrafast Laplace NMR approach shortens the experiment time to a fraction and makes even single-scan experiments possible. Single-scan experiments, in turn, significantly facilitate the use of nuclear spin hyperpolarization methods to boost sensitivity. The ultrafast Laplace NMR method is also applicable with low-field, mobile NMR instruments, and it can be exploited in many disciplines. For example, it has been used in studies of the dynamics of fluids in porous materials, identification of intra- and extracellular metabolites in cancer cells, and elucidation of aggregation phenomena in atmospheric surfactant solutions.
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Affiliation(s)
| | - Mateusz Urbańczyk
- NMR Research Unit, University of Oulu, P.O. Box 3000, FIN-90014, Finland; Centre of New Technologies, University of Warsaw, Banacha 2c, 02-097 Warsaw, Poland
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9
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Tickner BJ, Zhivonitko VV, Telkki VV. Ultrafast Laplace NMR to study metal-ligand interactions in reversible polarisation transfer from parahydrogen. Phys Chem Chem Phys 2021; 23:16542-16550. [PMID: 34338685 PMCID: PMC8359933 DOI: 10.1039/d1cp02383g] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2021] [Accepted: 07/22/2021] [Indexed: 12/11/2022]
Abstract
Laplace Nuclear Magnetic Resonance (NMR) can determine relaxation parameters and diffusion constants, giving valuable information about molecular structure and dynamics. Information about relaxation times (T1 and T2) and the self-diffusion coefficient (D) can be extracted from exponentially decaying NMR signals by performing a Laplace transform, which is a different approach to traditional NMR involving Fourier transform of a free induction decay. Ultrafast Laplace NMR uses spatial encoding to collect the entire data set in just a single scan which provides orders of magnitude time savings. In this work we use ultrafast Laplace NMR D-T2 correlation sequences to measure key relaxation (T2) and diffusion (D) parameters of methanolic solutions containing pyridine. For the first time we combine this technique with the hyperpolarisation technique Signal Amplification By Reversible Exchange (SABRE), which employs an iridium catalyst to reversibly transfer polarisation from parahydrogen, to boost the 1H NMR signals of pyridine by up to 300-fold. We demonstrate use of ultrafast Laplace NMR to monitor changes in pyridine T2 and D associated with ligation to the iridium SABRE catalyst and kinetic isotope exchange reactions. The combined 1440-fold reduction in experiment time and 300-fold 1H NMR signal enhancement allow the determination of pyridine D coefficients and T2 values at 25 mM concentrations in just 3 seconds using SABRE hyperpolarised ultrafast Laplace NMR.
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Affiliation(s)
- Ben. J. Tickner
- NMR Research Unit, Faculty of Science, University of Oulu90014Finland
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10
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Chighine K, Léonce E, Boutin C, Desvaux H, Berthault P. 129Xe ultra-fast Z spectroscopy enables micromolar detection of biosensors on a 1 T benchtop spectrometer. MAGNETIC RESONANCE (GOTTINGEN, GERMANY) 2021; 2:409-420. [PMID: 37904767 PMCID: PMC10539730 DOI: 10.5194/mr-2-409-2021] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/18/2021] [Accepted: 05/31/2021] [Indexed: 11/01/2023]
Abstract
The availability of a benchtop nuclear magnetic resonance (NMR) spectrometer, of low cost and easily transportable, can allow detection of low quantities of biosensors, provided that hyperpolarized species are used. Here we show that the micromolar threshold can easily be reached by employing laser-polarized xenon and cage molecules reversibly hosting it. Indirect detection of caged xenon is made via chemical exchange, using ultra-fast Z spectroscopy based on spatio-temporal encoding. On this non-dedicated low-field spectrometer, several ideas are proposed to improve the signal.
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Affiliation(s)
- Kévin Chighine
- Nanosciences et Innovation pour les Matériaux, la Biomédecine et l'Energie, CEA, CNRS, Université Paris-Saclay, 91191, Gif-sur-Yvette, France
| | - Estelle Léonce
- Nanosciences et Innovation pour les Matériaux, la Biomédecine et l'Energie, CEA, CNRS, Université Paris-Saclay, 91191, Gif-sur-Yvette, France
| | - Céline Boutin
- Nanosciences et Innovation pour les Matériaux, la Biomédecine et l'Energie, CEA, CNRS, Université Paris-Saclay, 91191, Gif-sur-Yvette, France
| | - Hervé Desvaux
- Nanosciences et Innovation pour les Matériaux, la Biomédecine et l'Energie, CEA, CNRS, Université Paris-Saclay, 91191, Gif-sur-Yvette, France
| | - Patrick Berthault
- Nanosciences et Innovation pour les Matériaux, la Biomédecine et l'Energie, CEA, CNRS, Université Paris-Saclay, 91191, Gif-sur-Yvette, France
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11
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Lin E, Telkki VV, Lin X, Huang C, Zhan H, Yang Y, Huang Y, Chen Z. High-Resolution Reconstruction for Multidimensional Laplace NMR. J Phys Chem Lett 2021; 12:5085-5090. [PMID: 34028285 PMCID: PMC8397344 DOI: 10.1021/acs.jpclett.1c01022] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Accepted: 05/19/2021] [Indexed: 06/12/2023]
Abstract
As a perfect complement to conventional NMR that aims for chemical structure elucidation, Laplace NMR constitutes a powerful technique to study spin relaxation and diffusion, revealing information on molecular motions and spin interactions. Different from conventional NMR adopting Fourier transform to deal with the acquired data, Laplace NMR relies on specially designed signal processing and reconstruction algorithms resembling the inverse Laplace transform, and it generally faces severe challenges in cases where high spectral resolution and high spectral dimensionality are required. Herein, based on the tensor technique for high-dimensional problems and the sparsity assumption, we propose a general method for high-resolution reconstruction of multidimensional Laplace NMR data. We show that the proposed method can reconstruct multidimensional Laplace NMR spectra in a high-resolution manner for exponentially decaying relaxation and diffusion data acquired by commercial NMR instruments. Therefore, it would broaden the scope of multidimensional Laplace NMR applications.
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Affiliation(s)
- Enping Lin
- State
Key Laboratory of Physical Chemistry of Solid Surfaces, Xiamen University, Xiamen, Fujian 361005, China
| | - Ville-Veikko Telkki
- NMR
Research Unit, University of Oulu, P.O. Box 3000, Oulu FIN-90014, Finland
| | - Xiaoqing Lin
- State
Key Laboratory of Physical Chemistry of Solid Surfaces, Xiamen University, Xiamen, Fujian 361005, China
| | - Chengda Huang
- State
Key Laboratory of Physical Chemistry of Solid Surfaces, Xiamen University, Xiamen, Fujian 361005, China
| | - Haolin Zhan
- State
Key Laboratory of Physical Chemistry of Solid Surfaces, Xiamen University, Xiamen, Fujian 361005, China
| | - Yu Yang
- State
Key Laboratory of Physical Chemistry of Solid Surfaces, Xiamen University, Xiamen, Fujian 361005, China
| | - Yuqing Huang
- State
Key Laboratory of Physical Chemistry of Solid Surfaces, Xiamen University, Xiamen, Fujian 361005, China
| | - Zhong Chen
- State
Key Laboratory of Physical Chemistry of Solid Surfaces, Xiamen University, Xiamen, Fujian 361005, China
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12
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Urbańczyk M, Kharbanda Y, Mankinen O, Telkki VV. Accelerating Restricted Diffusion NMR Studies with Time-Resolved and Ultrafast Methods. Anal Chem 2020; 92:9948-9955. [PMID: 32551510 PMCID: PMC7439255 DOI: 10.1021/acs.analchem.0c01523] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
![]()
Restricted
diffusion of fluids in porous materials can be studied
by pulsed field gradient nuclear magnetic resonance (NMR) non-invasively
and without tracers. If the experiment is repeated many times with
varying diffusion delays, detailed information about pore sizes and
tortuosity can be recorded. However, the measurements are very time-consuming
because numerous repetitions are needed for gradient ramping and varying
diffusion delays. In this paper, we demonstrate two different strategies
for acceleration of the restricted diffusion NMR measurements: time-resolved
diffusion NMR and ultrafast Laplace NMR. The former is based on time-resolved
non-uniform sampling, while the latter relies on spatial encoding
of two-dimensional data. Both techniques allow similar 1–2
order of magnitude acceleration of acquisition, but they have different
strengths and weaknesses, which we discuss in detail. The feasibility
of the methods was proven by investigating restricted diffusion of
water inside tracheid cells of thermally modified pine wood.
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Affiliation(s)
| | | | - Otto Mankinen
- NMR Research Unit, University of Oulu, 90014 Oulu, Finland.,Oulu Functional NeuroImaging Group, Research Unit of Medical Imaging, Physics and Technology, Medical Research Center Oulu, University of Oulu and Oulu University Hospital, 90029 Oulu, Finland
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13
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Abstract
The exchange of molecules between different physical or chemical environments due to diffusion or chemical transformations has a crucial role in a plethora of fundamental processes such as breathing, protein folding, chemical reactions and catalysis. Here, we introduce a method for a single-scan, ultrafast NMR analysis of molecular exchange based on the diffusion coefficient contrast. The method shortens the experiment time by one to four orders of magnitude. Consequently, it opens the way for high sensitivity quantification of important transient physical and chemical exchange processes such as in cellular metabolism. As a proof of principle, we demonstrate that the method reveals the structure of aggregates formed by surfactants relevant to aerosol research. Analysis of exchange processes is time consuming by two-dimensional exchange NMR spectroscopy. Here the authors demonstrate a single-scan ultrafast Laplace NMR approach based on spatial encoding to measure molecular diffusion, with an increase by a factor six in the sensitivity per unit time.
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14
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Zhivonitko VV, Ullah MS, Telkki VV. Nonlinear sampling in ultrafast Laplace NMR. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2019; 307:106571. [PMID: 31445478 DOI: 10.1016/j.jmr.2019.106571] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2019] [Revised: 08/09/2019] [Accepted: 08/09/2019] [Indexed: 06/10/2023]
Abstract
Ultrafast Laplace NMR (UF-LNMR) reduces the experiment time of multidimensional relaxation and diffusion measurements to a fraction. Here, we demonstrate a method for nonlinear (in this case logarithmic) sampling of the indirect dimension in UF-LNMR measurements. The method is based on the use of frequency-swept pulses with the frequency nonlinearly increasing with time. This leads to an optimized detection of exponential experimental data and significantly improved resolution of LNMR parameters.
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Affiliation(s)
| | - Md Sharif Ullah
- NMR Research Unit, University of Oulu, P.O. Box 3000, 90014 Oulu, Finland
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15
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Dumez JN. Spatial encoding and spatial selection methods in high-resolution NMR spectroscopy. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2018; 109:101-134. [PMID: 30527133 DOI: 10.1016/j.pnmrs.2018.08.001] [Citation(s) in RCA: 44] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2018] [Revised: 08/01/2018] [Accepted: 08/01/2018] [Indexed: 06/09/2023]
Abstract
A family of high-resolution NMR methods share the common concept of acquiring in parallel different sub-experiments in different spatial regions of the NMR tube. These spatial encoding and spatial selection methods were for the most part introduced independently from each other and serve different purposes, but they share common ingredients, often derived from magnetic resonance imaging, and they all benefit from a greatly improved time-efficiency. This review article provides a description of several spatial encoding and spatial selection methods, including single-scan multidimensional experiments (ultrafast 2D NMR, DOSY, Z spectroscopy, inversion recovery and Laplace NMR), pure shift and selective refocusing experiments (including Zangger-Sterk decoupling, G-SERF and PSYCHE), a Z filter, and fast-pulsing slice-selective experiments. Some key elements for spatial parallelisation are introduced and when possible a common framework is used for the analysis of each method. Sensitivity considerations are discussed, and a selection of applications is analysed to illustrate which questions can be answered thanks to spatial encoding and spatial selection methods, and discuss the perspectives for future developments and applications.
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Affiliation(s)
- Jean-Nicolas Dumez
- Institut de Chimie des Substances Naturelles, CNRS UPR2301, Univ. Paris Sud, Université Paris-Saclay, Avenue de la Terrasse, 91190 Gif-sur-Yvette, France.
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16
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Zhang G, Ahola S, Lerche MH, Telkki VV, Hilty C. Identification of Intracellular and Extracellular Metabolites in Cancer Cells Using 13C Hyperpolarized Ultrafast Laplace NMR. Anal Chem 2018; 90:11131-11137. [PMID: 30125087 PMCID: PMC6168181 DOI: 10.1021/acs.analchem.8b03096] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
![]()
Ultrafast
Laplace NMR (UF-LNMR), which is based on the spatial
encoding of multidimensional data, enables one to carry out 2D relaxation
and diffusion measurements in a single scan. Besides reducing the
experiment time to a fraction, it significantly facilitates the use
of nuclear spin hyperpolarization to boost experimental sensitivity,
because the time-consuming polarization step does not need to be repeated.
Here we demonstrate the usability of hyperpolarized UF-LNMR in the
context of cell metabolism, by investigating the conversion of pyruvate
to lactate in the cultures of mouse 4T1 cancer cells. We show that 13C ultrafast diffusion–T2 relaxation correlation measurements, with the sensitivity enhanced
by several orders of magnitude by dissolution dynamic nuclear polarization
(D-DNP), allows the determination of the extra- vs intracellular
location of metabolites because of their significantly different values
of diffusion coefficients and T2 relaxation
times. Under the current conditions, pyruvate was located predominantly
in the extracellular pool, while lactate remained primarily intracellular.
Contrary to the small flip angle diffusion methods reported in the
literature, the UF-LNMR method does not require several scans with
varying gradient strength, and it provides a combined diffusion and T2 contrast. Furthermore, the ultrafast concept
can be extended to various other multidimensional LNMR experiments,
which will provide detailed information about the dynamics and exchange
processes of cell metabolites.
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Affiliation(s)
- Guannan Zhang
- Department of Chemistry , Texas A&M University , 3255 TAMU, College Station , Texas 77843 , United States
| | - Susanna Ahola
- NMR Research Unit, Faculty of Science , University of Oulu , P.O. Box 3000, 90014 Oulu , Finland
| | - Mathilde H Lerche
- Department of Electrical Engineering, Center for Hyperpolarization in Magnetic Resonance , Technical University of Denmark , Building 349, DK-2800 Kgs Lyngby , Denmark
| | - Ville-Veikko Telkki
- NMR Research Unit, Faculty of Science , University of Oulu , P.O. Box 3000, 90014 Oulu , Finland
| | - Christian Hilty
- Department of Chemistry , Texas A&M University , 3255 TAMU, College Station , Texas 77843 , United States
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17
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King JN, Fallorina A, Yu J, Zhang G, Telkki VV, Hilty C, Meldrum T. Probing molecular dynamics with hyperpolarized ultrafast Laplace NMR using a low-field, single-sided magnet. Chem Sci 2018; 9:6143-6149. [PMID: 30090302 PMCID: PMC6053973 DOI: 10.1039/c8sc01329b] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2018] [Accepted: 06/27/2018] [Indexed: 11/21/2022] Open
Abstract
Laplace NMR (LNMR) offers deep insights on diffusional and rotational motion of molecules. The so-called "ultrafast" approach, based on spatial data encoding, enables one to carry out a multidimensional LNMR experiment in a single scan, providing from 10 to 1000-fold acceleration of the experiment. Here, we demonstrate the feasibility of ultrafast diffusion-T2 relaxation correlation (D-T2) measurements with a mobile, low-field, relatively low-cost, single-sided NMR magnet. We show that the method can probe a broad range of diffusion coefficients (at least from 10-8 to 10-12 m2 s-1) and reveal multiple components of fluids in heterogeneous materials. The single-scan approach is demonstrably compatible with nuclear spin hyperpolarization techniques because the time-consuming hyperpolarization process does not need to be repeated. Using dynamic nuclear polarization (DNP), we improved the NMR sensitivity of water molecules by a factor of 105 relative to non-hyperpolarized NMR in the 0.3 T field of the single-sided magnet. This enabled us to acquire a D-T2 map in a single, 22 ms scan, despite the low field and relatively low mole fraction (0.003) of hyperpolarized water. Consequently, low-field, hyperpolarized ultrafast LNMR offers significant prospects for advanced, mobile, low-cost and high-sensitivity chemical and medical analysis.
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Affiliation(s)
- Jared N King
- Department of Chemistry , The College of William & Mary , Williamsburg , Virginia 23187-8795 , USA .
| | - Alfredo Fallorina
- Department of Chemistry , The College of William & Mary , Williamsburg , Virginia 23187-8795 , USA .
| | - Justin Yu
- Department of Chemistry , The College of William & Mary , Williamsburg , Virginia 23187-8795 , USA .
| | - Guannan Zhang
- Department of Chemistry , Texas A&M University , 3255 TAMU , College Station , Texas 77843 , USA
| | - Ville-Veikko Telkki
- NMR Research Unit , Faculty of Science , University of Oulu , 90014 Oulu , Finland
| | - Christian Hilty
- Department of Chemistry , Texas A&M University , 3255 TAMU , College Station , Texas 77843 , USA
| | - Tyler Meldrum
- Department of Chemistry , The College of William & Mary , Williamsburg , Virginia 23187-8795 , USA .
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18
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Telkki VV. Hyperpolarized Laplace NMR. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2018; 56:619-632. [PMID: 29441608 DOI: 10.1002/mrc.4722] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2017] [Revised: 01/24/2018] [Accepted: 01/31/2018] [Indexed: 06/08/2023]
Abstract
Laplace nuclear magnetic resonance (NMR), dealing with NMR relaxation and diffusion experiments, reveals details of molecular motion and provides chemical resolution complementary to NMR spectra. Laplace NMR has witnessed a great progress in past decades due to the development of methodology and signal processing, and it has lots of extremely interesting applications in various fields, including chemistry, biochemistry, geology, archaeology, and medicine. The aim of this minireview is to give a pedagogically oriented overview of Laplace NMR. It does not provide a full literature review of the field, but, instead, it elucidate the benefits and features of Laplace NMR methods through few selected examples. The minireview describes also recent progress in multidimensional Laplace NMR and Laplace inversion methods. Furthermore, the potential of modern hyperpolarization methods as well as ultrafast approach to increase the sensitivity and time-efficiency of the Laplace NMR experiments is highlighted.
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19
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Javed MA, Ahola S, Håkansson P, Mankinen O, Aslam MK, Filippov A, Shah FU, Glavatskih S, Antzutkin ON, Telkki VV. Structure and dynamics elucidation of ionic liquids using multidimensional Laplace NMR. Chem Commun (Camb) 2018; 53:11056-11059. [PMID: 28948273 DOI: 10.1039/c7cc05493a] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
We demonstrate the ability of multidimensional Laplace NMR (LNMR), comprising relaxation and diffusion experiments, to reveal essential information about microscopic phase structures and dynamics of ionic liquids that is not observable using conventional NMR spectroscopy or other techniques.
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20
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Blümich B, Singh K. Desktop NMR and Its Applications From Materials Science To Organic Chemistry. Angew Chem Int Ed Engl 2017; 57:6996-7010. [PMID: 29230908 DOI: 10.1002/anie.201707084] [Citation(s) in RCA: 56] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2017] [Indexed: 12/19/2022]
Abstract
NMR spectroscopy is an indispensable method of analysis in chemistry, which until recently suffered from high demands for space, high costs for acquisition and maintenance, and operational complexity. This has changed with the introduction of compact NMR spectrometers suitable for small-molecule analysis on the chemical workbench. These spectrometers contain permanent magnets giving rise to proton NMR frequencies between 40 and 80 MHz. The enabling technology is to make small permanent magnets with homogeneous fields. Tabletop instruments with inhomogeneous fields have been in use for over 40 years for characterizing food and hydrogen-containing materials by relaxation and diffusion measurements. Related NMR instruments measure these parameters in the stray field outside the magnet. They are used to inspect the borehole walls of oil wells and to test objects nondestructively. The state-of-the-art of NMR spectroscopy, imaging and relaxometry with compact instruments is reviewed.
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Affiliation(s)
- Bernhard Blümich
- Institut für Technische und Makromolekulare Chemie, RWTH Aachen University, Aachen, Germany
| | - Kawarpal Singh
- Institut für Technische und Makromolekulare Chemie, RWTH Aachen University, Aachen, Germany
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21
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Blümich B, Singh K. NMR mit Tischgeräten und deren Anwendungen von der Materialwissenschaft bis zur organischen Chemie. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201707084] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Bernhard Blümich
- Institut für Technische und Makromolekulare Chemie; RWTH Aachen University; Aachen Deutschland
| | - Kawarpal Singh
- Institut für Technische und Makromolekulare Chemie; RWTH Aachen University; Aachen Deutschland
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22
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Ahola S, Mankinen O, Telkki VV. Ultrafast NMR diffusion measurements exploiting chirp spin echoes. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2017; 55:341-347. [PMID: 27726201 DOI: 10.1002/mrc.4540] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2016] [Revised: 09/30/2016] [Accepted: 10/07/2016] [Indexed: 06/06/2023]
Abstract
Standard diffusion NMR measurements require the repetition of the experiment multiple times with varying gradient strength or diffusion delay. This makes the experiment time-consuming and restricts the use of hyperpolarized substances to boost sensitivity. We propose a novel single-scan diffusion experiment, which is based on spatial encoding of two-dimensional data, employing the spin-echoes created by two successive adiabatic frequency-swept chirp π pulses. The experiment is called ultrafast pulsed-field-gradient spin-echo (UF-PGSE). We present a rigorous derivation of the echo amplitude in the UF-PGSE experiment, justifying the theoretical basis of the method. The theory reveals also that the standard analysis of experimental data leads to a diffusion coefficient value overestimated by a few per cent. Although the overestimation is of the order of experimental error and thus insignificant in many practical applications, we propose that it can be compensated by a bipolar gradient version of the experiment, UF-BP-PGSE, or by corresponding stimulated-echo experiment, UF-BP-pulsed-field-gradient stimulated-echo. The latter also removes the effect of uniform background gradients. The experiments offer significant prospects for monitoring fast processes in real time as well as for increasing the sensitivity of experiments by several orders of magnitude by nuclear spin hyperpolarization. Furthermore, they can be applied as basic blocks in various ultrafast multidimensional Laplace NMR experiments. Copyright © 2016 John Wiley & Sons, Ltd.
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Affiliation(s)
- Susanna Ahola
- NMR Research Unit, University of Oulu, POBox 3000, FIN-90014, Oulu, Finland
| | - Otto Mankinen
- NMR Research Unit, University of Oulu, POBox 3000, FIN-90014, Oulu, Finland
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23
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Barskiy DA, Coffey AM, Nikolaou P, Mikhaylov DM, Goodson BM, Branca RT, Lu GJ, Shapiro MG, Telkki VV, Zhivonitko VV, Koptyug IV, Salnikov OG, Kovtunov KV, Bukhtiyarov VI, Rosen MS, Barlow MJ, Safavi S, Hall IP, Schröder L, Chekmenev EY. NMR Hyperpolarization Techniques of Gases. Chemistry 2017; 23:725-751. [PMID: 27711999 PMCID: PMC5462469 DOI: 10.1002/chem.201603884] [Citation(s) in RCA: 109] [Impact Index Per Article: 15.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2016] [Indexed: 01/09/2023]
Abstract
Nuclear spin polarization can be significantly increased through the process of hyperpolarization, leading to an increase in the sensitivity of nuclear magnetic resonance (NMR) experiments by 4-8 orders of magnitude. Hyperpolarized gases, unlike liquids and solids, can often be readily separated and purified from the compounds used to mediate the hyperpolarization processes. These pure hyperpolarized gases enabled many novel MRI applications including the visualization of void spaces, imaging of lung function, and remote detection. Additionally, hyperpolarized gases can be dissolved in liquids and can be used as sensitive molecular probes and reporters. This Minireview covers the fundamentals of the preparation of hyperpolarized gases and focuses on selected applications of interest to biomedicine and materials science.
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Affiliation(s)
- Danila A Barskiy
- Department of Radiology, Department of Biomedical Engineering, Department of Physics, Vanderbilt-Ingram Cancer Center (VICC), Vanderbilt University Institute of Imaging Science (VUIIS), Vanderbilt University, Nashville, TN, 37232, USA
| | - Aaron M Coffey
- Department of Radiology, Department of Biomedical Engineering, Department of Physics, Vanderbilt-Ingram Cancer Center (VICC), Vanderbilt University Institute of Imaging Science (VUIIS), Vanderbilt University, Nashville, TN, 37232, USA
| | - Panayiotis Nikolaou
- Department of Radiology, Department of Biomedical Engineering, Department of Physics, Vanderbilt-Ingram Cancer Center (VICC), Vanderbilt University Institute of Imaging Science (VUIIS), Vanderbilt University, Nashville, TN, 37232, USA
| | | | - Boyd M Goodson
- Southern Illinois University, Department of Chemistry and Biochemistry, Materials Technology Center, Carbondale, IL, 62901, USA
| | - Rosa T Branca
- Department of Physics and Astronomy, Biomedical Research Imaging Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA
| | - George J Lu
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA, 91125, USA
| | - Mikhail G Shapiro
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA, 91125, USA
| | | | - Vladimir V Zhivonitko
- International Tomography Center SB RAS, 630090, Novosibirsk, Russia
- Novosibirsk State University, Pirogova St. 2, 630090, Novosibirsk, Russia
| | - Igor V Koptyug
- International Tomography Center SB RAS, 630090, Novosibirsk, Russia
- Novosibirsk State University, Pirogova St. 2, 630090, Novosibirsk, Russia
| | - Oleg G Salnikov
- International Tomography Center SB RAS, 630090, Novosibirsk, Russia
- Novosibirsk State University, Pirogova St. 2, 630090, Novosibirsk, Russia
| | - Kirill V Kovtunov
- International Tomography Center SB RAS, 630090, Novosibirsk, Russia
- Novosibirsk State University, Pirogova St. 2, 630090, Novosibirsk, Russia
| | - Valerii I Bukhtiyarov
- Boreskov Institute of Catalysis SB RAS, 5 Acad. Lavrentiev Pr., 630090, Novosibirsk, Russia
| | - Matthew S Rosen
- MGH/A.A. Martinos Center for Biomedical Imaging, Boston, MA, 02129, USA
| | - Michael J Barlow
- Respiratory Medicine Department, Queen's Medical Centre, University of Nottingham Medical School, Nottingham, NG7 2UH, UK
| | - Shahideh Safavi
- Respiratory Medicine Department, Queen's Medical Centre, University of Nottingham Medical School, Nottingham, NG7 2UH, UK
| | - Ian P Hall
- Respiratory Medicine Department, Queen's Medical Centre, University of Nottingham Medical School, Nottingham, NG7 2UH, UK
| | - Leif Schröder
- Molecular Imaging, Department of Structural Biology, Leibniz-Institut für Molekulare Pharmakologie (FMP), 13125, Berlin, Germany
| | - Eduard Y Chekmenev
- Department of Radiology, Department of Biomedical Engineering, Department of Physics, Vanderbilt-Ingram Cancer Center (VICC), Vanderbilt University Institute of Imaging Science (VUIIS), Vanderbilt University, Nashville, TN, 37232, USA
- Russian Academy of Sciences, 119991, Moscow, Russia
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24
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Williamson NH, Röding M, Galvosas P, Miklavcic SJ, Nydén M. Obtaining T1-T2 distribution functions from 1-dimensional T1 and T2 measurements: The pseudo 2-D relaxation model. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2016; 269:186-195. [PMID: 27344611 DOI: 10.1016/j.jmr.2016.06.009] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2016] [Revised: 06/14/2016] [Accepted: 06/15/2016] [Indexed: 06/06/2023]
Abstract
We present the pseudo 2-D relaxation model (P2DRM), a method to estimate multidimensional probability distributions of material parameters from independent 1-D measurements. We illustrate its use on 1-D T1 and T2 relaxation measurements of saturated rock and evaluate it on both simulated and experimental T1-T2 correlation measurement data sets. Results were in excellent agreement with the actual, known 2-D distribution in the case of the simulated data set. In both the simulated and experimental case, the functional relationships between T1 and T2 were in good agreement with the T1-T2 correlation maps from the 2-D inverse Laplace transform of the full 2-D data sets. When a 1-D CPMG experiment is combined with a rapid T1 measurement, the P2DRM provides a double-shot method for obtaining a T1-T2 relationship, with significantly decreased experimental time in comparison to the full T1-T2 correlation measurement.
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Affiliation(s)
- Nathan H Williamson
- Future Industries Institute, University of South Australia, Mawson Lakes, SA 5095, Australia.
| | - Magnus Röding
- SP Food and Bioscience, Frans Perssons väg 6, 402 29 Göteborg, Sweden; School of Energy and Resources, UCL Australia, University College London, 220 Victoria Square, Adelaide, SA 5000, Australia.
| | - Petrik Galvosas
- MacDiarmid Institute for Advanced Materials and Nanotechnology, School of Chemical and Physical Sciences, Victoria University of Wellington, PO Box 600, Wellington, New Zealand.
| | - Stanley J Miklavcic
- Phenomics and Bioinformatics Research Centre, School of Information Technology and Mathematical Sciences, University of South Australia, Mawson Lakes, SA 5095, Australia.
| | - Magnus Nydén
- School of Energy and Resources, UCL Australia, University College London, 220 Victoria Square, Adelaide, SA 5000, Australia.
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