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For: Pesce L, Cozzolino M, Lanzanò L, Diaspro A, Bianchini P. Measuring expansion from macro- to nanoscale using NPC as intrinsic reporter. J Biophotonics 2019;12:e201900018. [PMID: 30980601 PMCID: PMC7065622 DOI: 10.1002/jbio.201900018] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/15/2019] [Revised: 03/20/2019] [Accepted: 03/21/2019] [Indexed: 05/22/2023]
Number Cited by Other Article(s)
1
Chowdhury R, Mimoso T, Chouaib AA, Mougios N, Krah D, Opazo F, Köster S, Rizzoli SO, Shaib AH. Microtubules as a versatile reference standard for expansion microscopy. Commun Biol 2025;8:499. [PMID: 40140540 PMCID: PMC11947214 DOI: 10.1038/s42003-025-07967-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2024] [Accepted: 03/19/2025] [Indexed: 03/28/2025]  Open
2
Langner E, Puapatanakul P, Pudlowski R, Alsabbagh DY, Miner JH, Horani A, Dutcher SK, Brody SL, Wang JT, Suleiman HY, Mahjoub MR. Ultrastructure expansion microscopy (U-ExM) of mouse and human kidneys for analysis of subcellular structures. Cytoskeleton (Hoboken) 2024;81:618-638. [PMID: 38715433 PMCID: PMC11540979 DOI: 10.1002/cm.21870] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2024] [Revised: 04/11/2024] [Accepted: 04/22/2024] [Indexed: 05/21/2024]
3
Pesce L, Ricci P, Sportelli G, Belcari N, Sancataldo G. Expansion and Light-Sheet Microscopy for Nanoscale 3D Imaging. SMALL METHODS 2024;8:e2301715. [PMID: 38461540 DOI: 10.1002/smtd.202301715] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Revised: 02/10/2024] [Indexed: 03/12/2024]
4
Hümpfer N, Thielhorn R, Ewers H. Expanding boundaries - a cell biologist's guide to expansion microscopy. J Cell Sci 2024;137:jcs260765. [PMID: 38629499 PMCID: PMC11058692 DOI: 10.1242/jcs.260765] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/19/2024]  Open
5
Langner E, Puapatanakul P, Pudlowski R, Alsabbagh DY, Miner JH, Horani A, Dutcher SK, Brody SL, Wang JT, Suleiman HY, Mahjoub MR. Ultrastructure expansion microscopy (U-ExM) of mouse and human kidneys for analysis of subcellular structures. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.02.16.580708. [PMID: 38405695 PMCID: PMC10889020 DOI: 10.1101/2024.02.16.580708] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/27/2024]
6
Theiss M, Hériché JK, Russell C, Helekal D, Soppitt A, Ries J, Ellenberg J, Brazma A, Uhlmann V. Simulating structurally variable nuclear pore complexes for microscopy. Bioinformatics 2023;39:btad587. [PMID: 37756700 PMCID: PMC10570993 DOI: 10.1093/bioinformatics/btad587] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Revised: 09/08/2023] [Accepted: 09/22/2023] [Indexed: 09/29/2023]  Open
7
Wen G, Leen V, Rohand T, Sauer M, Hofkens J. Current Progress in Expansion Microscopy: Chemical Strategies and Applications. Chem Rev 2023;123:3299-3323. [PMID: 36881995 DOI: 10.1021/acs.chemrev.2c00711] [Citation(s) in RCA: 24] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/09/2023]
8
Hawkins TJ, Robson JL, Cole B, Bush SJ. Expansion Microscopy of Plant Cells (PlantExM). Methods Mol Biol 2023;2604:127-142. [PMID: 36773230 DOI: 10.1007/978-1-0716-2867-6_10] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/12/2023]
9
Truckenbrodt S. Expansion Microscopy: Super-Resolution Imaging with Hydrogels. Anal Chem 2023;95:3-32. [PMID: 36625105 DOI: 10.1021/acs.analchem.2c04921] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
10
Capitini C, Pesce L, Fani G, Mazzamuto G, Genovese M, Franceschini A, Paoli P, Pieraccini G, Zasloff M, Chiti F, Pavone FS, Calamai M. Studying the trafficking of labeled trodusquemine and its application as nerve marker for light-sheet and expansion microscopy. FASEB J 2022;36:e22655. [PMID: 36421008 PMCID: PMC9827910 DOI: 10.1096/fj.202201276r] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2022] [Revised: 10/27/2022] [Accepted: 11/01/2022] [Indexed: 11/25/2022]
11
Faulkner EL, Pike JA, Densham RM, Garlick E, Thomas SG, Neely RK, Morris JR. Imaging nanoscale nuclear structures with expansion microscopy. J Cell Sci 2022;135:276027. [PMID: 35748225 PMCID: PMC9450888 DOI: 10.1242/jcs.259009] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Accepted: 06/21/2022] [Indexed: 11/20/2022]  Open
12
Pesce L, Scardigli M, Gavryusev V, Laurino A, Mazzamuto G, Brady N, Sancataldo G, Silvestri L, Destrieux C, Hof PR, Costantini I, Pavone FS. 3D molecular phenotyping of cleared human brain tissues with light-sheet fluorescence microscopy. Commun Biol 2022;5:447. [PMID: 35551498 PMCID: PMC9098858 DOI: 10.1038/s42003-022-03390-0] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Accepted: 04/21/2022] [Indexed: 12/17/2022]  Open
13
Li H, Warden AR, He J, Shen G, Ding X. Expansion microscopy with ninefold swelling (NIFS) hydrogel permits cellular ultrastructure imaging on conventional microscope. SCIENCE ADVANCES 2022;8:eabm4006. [PMID: 35507653 PMCID: PMC9067917 DOI: 10.1126/sciadv.abm4006] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
14
Sun Y, Zhang Z, Bing T, Liu J, Li W, Liu X, Zhang N, Shu Y, Wang J, Shangguan D. Aptamer-Based Cell Nucleus Imaging via Expansion Microscopy. Anal Chem 2022;94:6044-6049. [PMID: 35380789 DOI: 10.1021/acs.analchem.2c00773] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
15
Amodio A, Cassani M, Mummolo L, Cortez-Jugo C, Bhangu SK, Symons J, Ahlenstiel CL, Forte G, Ricci F, Kelleher AD, Lewin SR, Cavalieri F, Caruso F. Nanoscale probing and imaging of HIV-1 RNA in cells with a chimeric LNA-DNA sensor. NANOSCALE 2022;14:3049-3061. [PMID: 35142755 DOI: 10.1039/d1nr08418f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
16
Damstra HGJ, Mohar B, Eddison M, Akhmanova A, Kapitein LC, Tillberg PW. Visualizing cellular and tissue ultrastructure using Ten-fold Robust Expansion Microscopy (TREx). eLife 2022;11:73775. [PMID: 35179128 PMCID: PMC8887890 DOI: 10.7554/elife.73775] [Citation(s) in RCA: 88] [Impact Index Per Article: 29.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2021] [Accepted: 01/30/2022] [Indexed: 12/18/2022]  Open
17
Ferri G, Pesce L, Tesi M, Marchetti P, Cardarelli F. β-Cell Pathophysiology: A Review of Advanced Optical Microscopy Applications. Int J Mol Sci 2021;22:ijms222312820. [PMID: 34884624 PMCID: PMC8657725 DOI: 10.3390/ijms222312820] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2021] [Revised: 11/24/2021] [Accepted: 11/24/2021] [Indexed: 11/30/2022]  Open
18
Scardigli M, Pesce L, Brady N, Mazzamuto G, Gavryusev V, Silvestri L, Hof PR, Destrieux C, Costantini I, Pavone FS. Comparison of Different Tissue Clearing Methods for Three-Dimensional Reconstruction of Human Brain Cellular Anatomy Using Advanced Imaging Techniques. Front Neuroanat 2021;15:752234. [PMID: 34867215 PMCID: PMC8632656 DOI: 10.3389/fnana.2021.752234] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2021] [Accepted: 10/13/2021] [Indexed: 01/29/2023]  Open
19
Gorilak P, Pružincová M, Vachova H, Olšinová M, Schmidt Cernohorska M, Varga V. Expansion microscopy facilitates quantitative super-resolution studies of cytoskeletal structures in kinetoplastid parasites. Open Biol 2021;11:210131. [PMID: 34465213 PMCID: PMC8437234 DOI: 10.1098/rsob.210131] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]  Open
20
Campbell LA, Pannoni KE, Savory NA, Lal D, Farris S. Protein-retention expansion microscopy for visualizing subcellular organelles in fixed brain tissue. J Neurosci Methods 2021;361:109285. [PMID: 34242703 PMCID: PMC8370715 DOI: 10.1016/j.jneumeth.2021.109285] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Revised: 06/29/2021] [Accepted: 07/05/2021] [Indexed: 11/21/2022]
21
Gallagher BR, Zhao Y. Expansion microscopy: A powerful nanoscale imaging tool for neuroscientists. Neurobiol Dis 2021;154:105362. [PMID: 33813047 PMCID: PMC8600979 DOI: 10.1016/j.nbd.2021.105362] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2020] [Revised: 03/26/2021] [Accepted: 03/31/2021] [Indexed: 01/13/2023]  Open
22
Zhu C, Wang A, Chen L, Guo L, Ye J, Chen Q, Wang Q, Yao G, Xia Q, Cai T, Guo J, Yang Z, Sun Z, Xu Y, Lu G, Zhang Z, Cao J, Liu Y, Xu H. Measurement of expansion factor and distortion for expansion microscopy using isolated renal glomeruli as landmarks. JOURNAL OF BIOPHOTONICS 2021;14:e202100001. [PMID: 33856738 DOI: 10.1002/jbio.202100001] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/01/2021] [Revised: 03/14/2021] [Accepted: 04/08/2021] [Indexed: 06/12/2023]
23
Büttner M, Lagerholm CB, Waithe D, Galiani S, Schliebs W, Erdmann R, Eggeling C, Reglinski K. Challenges of Using Expansion Microscopy for Super-resolved Imaging of Cellular Organelles. Chembiochem 2021;22:686-693. [PMID: 33049107 PMCID: PMC7894168 DOI: 10.1002/cbic.202000571] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2020] [Revised: 10/07/2020] [Indexed: 12/26/2022]
24
Zhao J, Lai HM, Qi Y, He D, Sun H. Current Status of Tissue Clearing and the Path Forward in Neuroscience. ACS Chem Neurosci 2021;12:5-29. [PMID: 33326739 DOI: 10.1021/acschemneuro.0c00563] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]  Open
25
Bianchini P, Pesce L, Diaspro A. Expansion microscopy at the nanoscale: The nuclear pore complex as a fiducial landmark. Methods Cell Biol 2020;161:275-295. [PMID: 33478693 DOI: 10.1016/bs.mcb.2020.07.001] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
26
Edwards SJ, Carannante V, Kuhnigk K, Ring H, Tararuk T, Hallböök F, Blom H, Önfelt B, Brismar H. High-Resolution Imaging of Tumor Spheroids and Organoids Enabled by Expansion Microscopy. Front Mol Biosci 2020;7:208. [PMID: 33195398 PMCID: PMC7543521 DOI: 10.3389/fmolb.2020.00208] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2020] [Accepted: 07/29/2020] [Indexed: 12/12/2022]  Open
27
Jacquemet G, Carisey AF, Hamidi H, Henriques R, Leterrier C. The cell biologist's guide to super-resolution microscopy. J Cell Sci 2020;133:133/11/jcs240713. [PMID: 32527967 DOI: 10.1242/jcs.240713] [Citation(s) in RCA: 85] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]  Open
28
Enhanced expansion microscopy to measure nanoscale structural and biochemical remodeling in single cells. Methods Cell Biol 2020;161:147-180. [PMID: 33478687 DOI: 10.1016/bs.mcb.2020.04.019] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
29
Faulkner EL, Thomas SG, Neely RK. An introduction to the methodology of expansion microscopy. Int J Biochem Cell Biol 2020;124:105764. [PMID: 32407880 DOI: 10.1016/j.biocel.2020.105764] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2020] [Revised: 04/30/2020] [Accepted: 05/03/2020] [Indexed: 01/21/2023]
30
Vanheusden M, Vitale R, Camacho R, Janssen KPF, Acke A, Rocha S, Hofkens J. Fluorescence Photobleaching as an Intrinsic Tool to Quantify the 3D Expansion Factor of Biological Samples in Expansion Microscopy. ACS OMEGA 2020;5:6792-6799. [PMID: 32258914 PMCID: PMC7114699 DOI: 10.1021/acsomega.0c00118] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/10/2020] [Accepted: 03/05/2020] [Indexed: 05/06/2023]
31
Lanzanò L. Counting the Components of Protein Complexes in the Nuclear Envelope. Biophys J 2020;118:989-990. [PMID: 32017890 DOI: 10.1016/j.bpj.2020.01.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2019] [Revised: 01/07/2020] [Accepted: 01/09/2020] [Indexed: 11/28/2022]  Open
32
Thevathasan JV, Kahnwald M, Cieśliński K, Hoess P, Peneti SK, Reitberger M, Heid D, Kasuba KC, Hoerner SJ, Li Y, Wu YL, Mund M, Matti U, Pereira PM, Henriques R, Nijmeijer B, Kueblbeck M, Sabinina VJ, Ellenberg J, Ries J. Nuclear pores as versatile reference standards for quantitative superresolution microscopy. Nat Methods 2019;16:1045-1053. [PMID: 31562488 PMCID: PMC6768092 DOI: 10.1038/s41592-019-0574-9] [Citation(s) in RCA: 205] [Impact Index Per Article: 34.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2019] [Accepted: 08/14/2019] [Indexed: 12/18/2022]
33
Molecular organization of mammalian meiotic chromosome axis revealed by expansion STORM microscopy. Proc Natl Acad Sci U S A 2019;116:18423-18428. [PMID: 31444302 DOI: 10.1073/pnas.1902440116] [Citation(s) in RCA: 78] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]  Open
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