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For: Sundberg JP, Sundberg BA, Schofield P. Integrating mouse anatomy and pathology ontologies into a phenotyping database: tools for data capture and training. Mamm Genome 2008;19:413-9. [PMID: 18797968 PMCID: PMC2844541 DOI: 10.1007/s00335-008-9123-z] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2008] [Accepted: 05/23/2008] [Indexed: 01/27/2023]
Number Cited by Other Article(s)
1
Sundberg JP, Rice RH. Phenotyping mice with skin, hair, or nail abnormalities: A systematic approach and methodologies from simple to complex. Vet Pathol 2023;60:829-842. [PMID: 37191004 DOI: 10.1177/03009858231170329] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
2
Ruberte J, Schofield PN, Sundberg JP, Rodriguez-Baeza A, Carretero A, McKerlie C. Bridging mouse and human anatomies; a knowledge-based approach to comparative anatomy for disease model phenotyping. Mamm Genome 2023:10.1007/s00335-023-10005-4. [PMID: 37421464 PMCID: PMC10382392 DOI: 10.1007/s00335-023-10005-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2023] [Accepted: 06/13/2023] [Indexed: 07/10/2023]
3
Sundberg JP, Pratt CH, Goodwin LP, Silva KA, Kennedy VE, Potter CS, Dunham A, Sundberg BA, HogenEsch H. Keratinocyte-specific deletion of SHARPIN induces atopic dermatitis-like inflammation in mice. PLoS One 2020;15:e0235295. [PMID: 32687504 PMCID: PMC7371178 DOI: 10.1371/journal.pone.0235295] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2020] [Accepted: 06/12/2020] [Indexed: 12/30/2022]  Open
4
Elmore SA, Cardiff R, Cesta MF, Gkoutos GV, Hoehndorf R, Keenan CM, McKerlie C, Schofield PN, Sundberg JP, Ward JM. A Review of Current Standards and the Evolution of Histopathology Nomenclature for Laboratory Animals. ILAR J 2019;59:29-39. [PMID: 30476141 DOI: 10.1093/ilar/ily005] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2017] [Revised: 05/04/2018] [Indexed: 12/14/2022]  Open
5
Linn SC, Mustonen AM, Silva KA, Kennedy VE, Sundberg BA, Bechtold LS, Alghamdi S, Hoehndorf R, Schofield PN, Sundberg JP. Nail abnormalities identified in an ageing study of 30 inbred mouse strains. Exp Dermatol 2019;28:383-390. [PMID: 30074290 PMCID: PMC6360140 DOI: 10.1111/exd.13759] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2018] [Accepted: 07/27/2018] [Indexed: 11/27/2022]
6
Sundberg JP, Boyd K, Hogenesch H, Nikitin AY, Treuting PM, Ward JM. Training mouse pathologists: 16th annual workshop on the pathology of mouse models of human disease. Lab Anim (NY) 2018;47:38-40. [PMID: 29384517 DOI: 10.1038/laban.1399] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
7
Sundberg JP, Boyd K, Hogenesch H, Nikitin AY, Treuting PM, Ward JM. Training mouse pathologists: 15 years of workshops on the pathology of mouse models of human disease. Lab Anim (NY) 2017;46:204-206. [PMID: 28422111 DOI: 10.1038/laban.1256] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
8
Mouse genome-wide association study identifies polymorphisms on chromosomes 4, 11, and 15 for age-related cardiac fibrosis. Mamm Genome 2016;27:179-90. [PMID: 27126641 DOI: 10.1007/s00335-016-9634-y] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2015] [Accepted: 03/24/2016] [Indexed: 10/21/2022]
9
Treuting PM, Snyder JM, Ikeno Y, Schofield PN, Ward JM, Sundberg JP. The Vital Role of Pathology in Improving Reproducibility and Translational Relevance of Aging Studies in Rodents. Vet Pathol 2016;53:244-9. [PMID: 26792843 PMCID: PMC4835687 DOI: 10.1177/0300985815620629] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
10
Sundberg JP, Berndt A, Sundberg BA, Silva KA, Kennedy V, Smith RS, Cooper TK, Schofield PN. Approaches to Investigating Complex Genetic Traits in a Large-Scale Inbred Mouse Aging Study. Vet Pathol 2016;53:456-67. [PMID: 26936752 PMCID: PMC5297262 DOI: 10.1177/0300985815612556] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
11
Sundberg JP, Silva KA, King LE, Pratt CH. Skin Diseases in Laboratory Mice: Approaches to Drug Target Identification and Efficacy Screening. Methods Mol Biol 2016;1438:199-224. [PMID: 27150092 PMCID: PMC5301944 DOI: 10.1007/978-1-4939-3661-8_12] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2023]
12
Berndt A, Ackert-Bicknell C, Silva KA, Kennedy VE, Sundberg BA, Cates JM, Schofield PN, Sundberg JP. Genetic determinants of fibro-osseous lesions in aged inbred mice. Exp Mol Pathol 2015;100:92-100. [PMID: 26589134 DOI: 10.1016/j.yexmp.2015.11.018] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2015] [Accepted: 11/12/2015] [Indexed: 12/12/2022]
13
Brayton CF, Treuting PM, Ward JM. Pathobiology of aging mice and GEM: background strains and experimental design. Vet Pathol 2014;49:85-105. [PMID: 22215684 DOI: 10.1177/0300985811430696] [Citation(s) in RCA: 120] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
14
Potter CS, Wang Z, Silva KA, Kennedy VE, Stearns TM, Burzenski L, Shultz LD, HogenEsch H, Sundberg JP. Chronic proliferative dermatitis in Sharpin null mice: development of an autoinflammatory disease in the absence of B and T lymphocytes and IL4/IL13 signaling. PLoS One 2014;9:e85666. [PMID: 24465642 PMCID: PMC3897490 DOI: 10.1371/journal.pone.0085666] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2013] [Accepted: 12/01/2013] [Indexed: 12/30/2022]  Open
15
Cardiff RD, Miller CH, Munn RJ, Galvez JJ. Structured reporting in anatomic pathology for coclinical trials: the caELMIR model. Cold Spring Harb Protoc 2014;2014:32-43. [PMID: 24173313 DOI: 10.1101/pdb.top078790] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
16
Schofield PN, Sundberg JP, Sundberg BA, McKerlie C, Gkoutos GV. The mouse pathology ontology, MPATH; structure and applications. J Biomed Semantics 2013;4:18. [PMID: 24033988 PMCID: PMC3851164 DOI: 10.1186/2041-1480-4-18] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2013] [Accepted: 08/19/2013] [Indexed: 12/18/2022]  Open
17
Berndt A, Sundberg BA, Silva KA, Kennedy VE, Richardson MA, Li Q, Bronson RT, Uitto J, Sundberg JP. Phenotypic characterization of the KK/HlJ inbred mouse strain. Vet Pathol 2013;51:846-57. [PMID: 24009271 DOI: 10.1177/0300985813501335] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
18
Retinoid metabolism is altered in human and mouse cicatricial alopecia. J Invest Dermatol 2012;133:325-33. [PMID: 23096705 PMCID: PMC3546159 DOI: 10.1038/jid.2012.393] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
19
Sundberg JP, HogenEsch H, Nikitin AY, Treuting PM, Ward JM. Training Mouse Pathologists: Ten Years of Workshops on the Pathology of Mouse Models of Human Disease. Toxicol Pathol 2012;40:823-5. [DOI: 10.1177/0192623312439123] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
20
Sundberg JP, Ward JM, HogenEsch H, Nikitin AY, Treuting PM, Macauley JB, Schofield PN. Training pathologists in mouse pathology. Vet Pathol 2012;49:393-7. [PMID: 20817889 PMCID: PMC3329931 DOI: 10.1177/0300985810381244] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
21
Cheng KC, Xin X, Clark DP, La Riviere P. Whole-animal imaging, gene function, and the Zebrafish Phenome Project. Curr Opin Genet Dev 2011;21:620-9. [PMID: 21963132 DOI: 10.1016/j.gde.2011.08.006] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2011] [Revised: 08/02/2011] [Accepted: 08/11/2011] [Indexed: 12/31/2022]
22
Berndt A, Cario CL, Silva KA, Kennedy VE, Harrison DE, Paigen B, Sundberg JP. Identification of fat4 and tsc22d1 as novel candidate genes for spontaneous pulmonary adenomas. Cancer Res 2011;71:5779-91. [PMID: 21764761 PMCID: PMC3165088 DOI: 10.1158/0008-5472.can-11-1418] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
23
Sundberg JP, Berndt A, Sundberg BA, Silva KA, Kennedy V, Bronson R, Yuan R, Paigen B, Harrison D, Schofield PN. The mouse as a model for understanding chronic diseases of aging: the histopathologic basis of aging in inbred mice. PATHOBIOLOGY OF AGING & AGE RELATED DISEASES 2011;1:PBA-1-7179. [PMID: 22953031 PMCID: PMC3417678 DOI: 10.3402/pba.v1i0.7179] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/07/2011] [Revised: 04/28/2011] [Accepted: 04/29/2011] [Indexed: 11/30/2022]
24
Schofield PN, Dubus P, Klein L, Moore M, McKerlie C, Ward JM, Sundberg JP. Pathology of the laboratory mouse: an International Workshop on Challenges for High Throughput Phenotyping. Toxicol Pathol 2011;39:559-62. [PMID: 21444746 DOI: 10.1177/0192623311399789] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
25
Yuan R, Peters LL, Paigen B. Mice as a mammalian model for research on the genetics of aging. ILAR J 2011;52:4-15. [PMID: 21411853 PMCID: PMC3074346 DOI: 10.1093/ilar.52.1.4] [Citation(s) in RCA: 98] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]  Open
26
Nguyen N, Judd LM, Kalantzis A, Whittle B, Giraud AS, van Driel IR. Random mutagenesis of the mouse genome: a strategy for discovering gene function and the molecular basis of disease. Am J Physiol Gastrointest Liver Physiol 2011;300:G1-11. [PMID: 20947703 PMCID: PMC3774088 DOI: 10.1152/ajpgi.00343.2010] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
27
Powell JA, Allen J, Sutter NB. DOG-SPOT database for comprehensive management of dog genetic research data. SOURCE CODE FOR BIOLOGY AND MEDICINE 2010;5:10. [PMID: 21159202 PMCID: PMC3009958 DOI: 10.1186/1751-0473-5-10] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/22/2010] [Accepted: 12/15/2010] [Indexed: 11/25/2022]
28
Schofield PN, Gruenberger M, Sundberg JP. Pathbase and the MPATH ontology. Community resources for mouse histopathology. Vet Pathol 2010;47:1016-20. [PMID: 20587689 PMCID: PMC3038412 DOI: 10.1177/0300985810374845] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
29
Sundberg JP, Schofield PN. Commentary: mouse genetic nomenclature. Standardization of strain, gene, and protein symbols. Vet Pathol 2010;47:1100-4. [PMID: 20685919 PMCID: PMC3039125 DOI: 10.1177/0300985810374837] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
30
Gkoutos GV, Mungall C, Dolken S, Ashburner M, Lewis S, Hancock J, Schofield P, Kohler S, Robinson PN. Entity/quality-based logical definitions for the human skeletal phenome using PATO. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2010;2009:7069-72. [PMID: 19964203 DOI: 10.1109/iembs.2009.5333362] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
31
Robinson PN, Mundlos S. The human phenotype ontology. Clin Genet 2010;77:525-34. [PMID: 20412080 DOI: 10.1111/j.1399-0004.2010.01436.x] [Citation(s) in RCA: 212] [Impact Index Per Article: 14.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
32
Sundberg JP, Silva KA, McPhee C, King LE. Skin diseases in laboratory mice: approaches to drug target identification and efficacy screening. Methods Mol Biol 2010;602:193-213. [PMID: 20012400 DOI: 10.1007/978-1-60761-058-8_12] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
33
Brown SDM, Wurst W, Kühn R, Hancock JM. The functional annotation of mammalian genomes: the challenge of phenotyping. Annu Rev Genet 2009;43:305-33. [PMID: 19689210 DOI: 10.1146/annurev-genet-102108-134143] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
34
Sundberg BA, Schofield PN, Gruenberger M, Sundberg JP. A data-capture tool for mouse pathology phenotyping. Vet Pathol 2009;46:1230-40. [PMID: 19605915 PMCID: PMC2879151 DOI: 10.1354/vp.09-vp-0002-s-fl] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
35
A mouse by any other name ... J Invest Dermatol 2009;129:1599-601. [PMID: 19521404 DOI: 10.1038/jid.2009.81] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
36
Sundberg JP, Ward JM, Schofield P. Where's the mouse info? Vet Pathol 2009;46:1241-4. [PMID: 19605899 DOI: 10.1354/vp.09-vp-0042-s-com] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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