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For: Li W, Ruf S, Bock R. Constancy of organellar genome copy numbers during leaf development and senescence in higher plants. Mol Genet Genomics 2006;275:185-92. [PMID: 16308694 DOI: 10.1007/s00438-005-0075-7] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2005] [Accepted: 10/27/2005] [Indexed: 10/25/2022]
Number Cited by Other Article(s)
1
Li M, Zheng Y, Cui D, Du Y, Zhang D, Sun W, Du H, Zhang Z. GIF1 controls ear inflorescence architecture and floral development by regulating key genes in hormone biosynthesis and meristem determinacy in maize. BMC PLANT BIOLOGY 2022;22:127. [PMID: 35303806 PMCID: PMC8932133 DOI: 10.1186/s12870-022-03517-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2021] [Accepted: 03/07/2022] [Indexed: 05/30/2023]
2
Edwards DM, Røyrvik EC, Chustecki JM, Giannakis K, Glastad RC, Radzvilavicius AL, Johnston IG. Avoiding organelle mutational meltdown across eukaryotes with or without a germline bottleneck. PLoS Biol 2021;19:e3001153. [PMID: 33891583 PMCID: PMC8064548 DOI: 10.1371/journal.pbio.3001153] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2020] [Accepted: 02/23/2021] [Indexed: 11/25/2022]  Open
3
Duan S, Hu L, Dong B, Jin HL, Wang HB. Signaling from Plastid Genome Stability Modulates Endoreplication and Cell Cycle during Plant Development. Cell Rep 2021;32:108019. [PMID: 32783941 DOI: 10.1016/j.celrep.2020.108019] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2019] [Revised: 04/08/2020] [Accepted: 07/20/2020] [Indexed: 01/10/2023]  Open
4
Ruhlman TA, Jansen RK. Plastid Genomes of Flowering Plants: Essential Principles. Methods Mol Biol 2021;2317:3-47. [PMID: 34028761 DOI: 10.1007/978-1-0716-1472-3_1] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
5
Lim LWK, Chung HH, Hussain H. Organellar genome copy number variations and integrity across different organs, growth stages, phenotypes and main localities of sago palm (Metroxylon sagu Rottboll) in Sarawak, Malaysia. GENE REPORTS 2020. [DOI: 10.1016/j.genrep.2020.100808] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
6
Lefèvre E, Gardner CM, Gunsch CK. A novel PCR-clamping assay reducing plant host DNA amplification significantly improves prokaryotic endo-microbiome community characterization. FEMS Microbiol Ecol 2020;96:5850752. [PMID: 32490528 DOI: 10.1093/femsec/fiaa110] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2020] [Accepted: 06/01/2020] [Indexed: 11/12/2022]  Open
7
Greiner S, Golczyk H, Malinova I, Pellizzer T, Bock R, Börner T, Herrmann RG. Chloroplast nucleoids are highly dynamic in ploidy, number, and structure during angiosperm leaf development. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020;102:730-746. [PMID: 31856320 DOI: 10.1111/tpj.14658] [Citation(s) in RCA: 39] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2019] [Revised: 11/20/2019] [Accepted: 12/10/2019] [Indexed: 05/19/2023]
8
Su X, Liu Y, Lv T, Ren Z. Characterization of the Complete Chloroplast Genome of an Endemic Perennial Grass Orinus intermedius and Its Phylogenetic Analysis in Poaceae. CYTOL GENET+ 2019. [DOI: 10.3103/s0095452719050128] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
9
Johnston IG. Tension and Resolution: Dynamic, Evolving Populations of Organelle Genomes within Plant Cells. MOLECULAR PLANT 2019;12:764-783. [PMID: 30445187 DOI: 10.1016/j.molp.2018.11.002] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2018] [Revised: 10/25/2018] [Accepted: 11/07/2018] [Indexed: 06/09/2023]
10
Yoshizumi T, Oikawa K, Chuah JA, Kodama Y, Numata K. Selective Gene Delivery for Integrating Exogenous DNA into Plastid and Mitochondrial Genomes Using Peptide-DNA Complexes. Biomacromolecules 2018;19:1582-1591. [PMID: 29601191 DOI: 10.1021/acs.biomac.8b00323] [Citation(s) in RCA: 56] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
11
Strehle MM, Purfeerst E, Christensen AC. A rapid and efficient method for enriching mitochondrial DNA from plants. MITOCHONDRIAL DNA PART B-RESOURCES 2018;3:239-242. [PMID: 33474130 PMCID: PMC7800896 DOI: 10.1080/23802359.2018.1438856] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
12
Danilova MN, Kudryakova NV, Doroshenko AS, Zabrodin DA, Rakhmankulova ZF, Oelmüller R, Kusnetsov VV. Opposite roles of the Arabidopsis cytokinin receptors AHK2 and AHK3 in the expression of plastid genes and genes for the plastid transcriptional machinery during senescence. PLANT MOLECULAR BIOLOGY 2017;93:533-546. [PMID: 28150126 DOI: 10.1007/s11103-016-0580-6] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2016] [Accepted: 12/14/2016] [Indexed: 06/06/2023]
13
Oldenburg DJ, Bendich AJ. DNA maintenance in plastids and mitochondria of plants. FRONTIERS IN PLANT SCIENCE 2015;6:883. [PMID: 26579143 PMCID: PMC4624840 DOI: 10.3389/fpls.2015.00883] [Citation(s) in RCA: 109] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2015] [Accepted: 10/05/2015] [Indexed: 05/02/2023]
14
Raven JA. Implications of mutation of organelle genomes for organelle function and evolution. JOURNAL OF EXPERIMENTAL BOTANY 2015;66:5639-50. [PMID: 26077836 DOI: 10.1093/jxb/erv298] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
15
Ma J, Li XQ. Organellar genome copy number variation and integrity during moderate maturation of roots and leaves of maize seedlings. Curr Genet 2015;61:591-600. [PMID: 25782449 DOI: 10.1007/s00294-015-0482-1] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2014] [Revised: 03/01/2015] [Accepted: 03/03/2015] [Indexed: 01/30/2023]
16
Kumar RA, Oldenburg DJ, Bendich AJ. Changes in DNA damage, molecular integrity, and copy number for plastid DNA and mitochondrial DNA during maize development. JOURNAL OF EXPERIMENTAL BOTANY 2014;65:6425-39. [PMID: 25261192 PMCID: PMC4246179 DOI: 10.1093/jxb/eru359] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
17
Oldenburg DJ, Rowan BA, Kumar RA, Bendich AJ. On the fate of plastid DNA molecules during leaf development: response to the Golczyk et al. Commentary. THE PLANT CELL 2014;26:855-61. [PMID: 24668748 PMCID: PMC4001397 DOI: 10.1105/tpc.113.121772] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2013] [Revised: 03/05/2014] [Accepted: 03/11/2014] [Indexed: 05/18/2023]
18
Golczyk H, Greiner S, Wanner G, Weihe A, Bock R, Börner T, Herrmann RG. Chloroplast DNA in mature and senescing leaves: a reappraisal. THE PLANT CELL 2014;26:847-54. [PMID: 24668747 PMCID: PMC4001396 DOI: 10.1105/tpc.113.117465] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2013] [Revised: 10/07/2013] [Accepted: 03/11/2014] [Indexed: 05/04/2023]
19
Ruhlman TA, Jansen RK. The plastid genomes of flowering plants. Methods Mol Biol 2014;1132:3-38. [PMID: 24599844 DOI: 10.1007/978-1-62703-995-6_1] [Citation(s) in RCA: 122] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
20
Development-Dependent Changes in the Amount and Structural Organization of Plastid DNA. PLASTID DEVELOPMENT IN LEAVES DURING GROWTH AND SENESCENCE 2013. [DOI: 10.1007/978-94-007-5724-0_11] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
21
Udy DB, Belcher S, Williams-Carrier R, Gualberto JM, Barkan A. Effects of reduced chloroplast gene copy number on chloroplast gene expression in maize. PLANT PHYSIOLOGY 2012;160:1420-31. [PMID: 22977281 PMCID: PMC3490597 DOI: 10.1104/pp.112.204198] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2012] [Accepted: 09/12/2012] [Indexed: 05/18/2023]
22
Tang LY, Matsushima R, Sakamoto W. Mutations defective in ribonucleotide reductase activity interfere with pollen plastid DNA degradation mediated by DPD1 exonuclease. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2012;70:637-49. [PMID: 22239102 DOI: 10.1111/j.1365-313x.2012.04904.x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
23
Kumar RA, Bendich AJ. Distinguishing authentic mitochondrial and plastid DNAs from similar DNA sequences in the nucleus using the polymerase chain reaction. Curr Genet 2011;57:287-95. [PMID: 21541695 DOI: 10.1007/s00294-011-0342-6] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2011] [Revised: 04/07/2011] [Accepted: 04/15/2011] [Indexed: 10/18/2022]
24
Zheng Q, Oldenburg DJ, Bendich AJ. Independent effects of leaf growth and light on the development of the plastid and its DNA content in Zea species. JOURNAL OF EXPERIMENTAL BOTANY 2011;62:2715-30. [PMID: 21266496 DOI: 10.1093/jxb/erq441] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
25
Matsushima R, Tang LY, Zhang L, Yamada H, Twell D, Sakamoto W. A conserved, Mg²+-dependent exonuclease degrades organelle DNA during Arabidopsis pollen development. THE PLANT CELL 2011;23:1608-24. [PMID: 21521697 PMCID: PMC3101548 DOI: 10.1105/tpc.111.084012] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2011] [Revised: 04/01/2011] [Accepted: 04/11/2011] [Indexed: 05/18/2023]
26
Rauwolf U, Golczyk H, Greiner S, Herrmann RG. Variable amounts of DNA related to the size of chloroplasts III. Biochemical determinations of DNA amounts per organelle. Mol Genet Genomics 2010;283:35-47. [PMID: 19911199 PMCID: PMC2799680 DOI: 10.1007/s00438-009-0491-1] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2009] [Accepted: 09/28/2009] [Indexed: 11/30/2022]
27
Evans IM, Rus AM, Belanger EM, Kimoto M, Brusslan JA. Dismantling of Arabidopsis thaliana mesophyll cell chloroplasts during natural leaf senescence. PLANT BIOLOGY (STUTTGART, GERMANY) 2010;12:1-12. [PMID: 20653883 PMCID: PMC4383266 DOI: 10.1111/j.1438-8677.2009.00206.x] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
28
Sakamoto W, Uno Y, Zhang Q, Miura E, Kato Y. Arrested differentiation of proplastids into chloroplasts in variegated leaves characterized by plastid ultrastructure and nucleoid morphology. PLANT & CELL PHYSIOLOGY 2009;50:2069-2083. [PMID: 19755395 DOI: 10.1093/pcp/pcp127] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
29
Gray BN, Ahner BA, Hanson MR. Extensive homologous recombination between introduced and native regulatory plastid DNA elements in transplastomic plants. Transgenic Res 2009;18:559-72. [PMID: 19184502 DOI: 10.1007/s11248-009-9246-3] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2008] [Accepted: 01/12/2009] [Indexed: 11/26/2022]
30
Valkov VT, Scotti N, Kahlau S, Maclean D, Grillo S, Gray JC, Bock R, Cardi T. Genome-wide analysis of plastid gene expression in potato leaf chloroplasts and tuber amyloplasts: transcriptional and posttranscriptional control. PLANT PHYSIOLOGY 2009;150:2030-44. [PMID: 19493969 PMCID: PMC2719133 DOI: 10.1104/pp.109.140483] [Citation(s) in RCA: 78] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2009] [Accepted: 05/28/2009] [Indexed: 05/19/2023]
31
Rowan BA, Oldenburg DJ, Bendich AJ. A multiple-method approach reveals a declining amount of chloroplast DNA during development in Arabidopsis. BMC PLANT BIOLOGY 2009;9:3. [PMID: 19128504 PMCID: PMC2632658 DOI: 10.1186/1471-2229-9-3] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2008] [Accepted: 01/07/2009] [Indexed: 05/18/2023]
32
Rowan BA, Bendich AJ. The loss of DNA from chloroplasts as leaves mature: fact or artefact? JOURNAL OF EXPERIMENTAL BOTANY 2009;60:3005-10. [PMID: 19454766 DOI: 10.1093/jxb/erp158] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
33
Bock R, Timmis JN. Reconstructing evolution: gene transfer from plastids to the nucleus. Bioessays 2008;30:556-66. [PMID: 18478535 DOI: 10.1002/bies.20761] [Citation(s) in RCA: 125] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
34
Coordination of gene expression between organellar and nuclear genomes. Nat Rev Genet 2008;9:383-95. [PMID: 18368053 PMCID: PMC4854206 DOI: 10.1038/nrg2348] [Citation(s) in RCA: 472] [Impact Index Per Article: 27.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
35
Zentgraf U, Hemleben V. Molecular Cell Biology: Are Reactive Oxygen Species Regulators of Leaf Senescence? PROGRESS IN BOTANY 2008. [DOI: 10.1007/978-3-540-72954-9_5] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
36
Sakamoto W, Miyagishima SY, Jarvis P. Chloroplast biogenesis: control of plastid development, protein import, division and inheritance. THE ARABIDOPSIS BOOK 2008;6:e0110. [PMID: 22303235 PMCID: PMC3243408 DOI: 10.1199/tab.0110] [Citation(s) in RCA: 109] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
37
Zoschke R, Liere K, Börner T. From seedling to mature plant: arabidopsis plastidial genome copy number, RNA accumulation and transcription are differentially regulated during leaf development. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2007;50:710-22. [PMID: 17425718 DOI: 10.1111/j.1365-313x.2007.03084.x] [Citation(s) in RCA: 132] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
38
DNA replication, recombination, and repair in plastids. CELL AND MOLECULAR BIOLOGY OF PLASTIDS 2007. [DOI: 10.1007/4735_2007_0231] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
39
Bock R. Structure, function, and inheritance of plastid genomes. CELL AND MOLECULAR BIOLOGY OF PLASTIDS 2007. [DOI: 10.1007/4735_2007_0223] [Citation(s) in RCA: 144] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
40
Oldenburg DJ, Rowan BA, Zhao L, Walcher CL, Schleh M, Bendich AJ. Loss or retention of chloroplast DNA in maize seedlings is affected by both light and genotype. PLANTA 2006;225:41-55. [PMID: 16941116 DOI: 10.1007/s00425-006-0329-6] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2006] [Accepted: 05/20/2006] [Indexed: 05/10/2023]
41
Lung B, Zemann A, Madej MJ, Schuelke M, Techritz S, Ruf S, Bock R, Hüttenhofer A. Identification of small non-coding RNAs from mitochondria and chloroplasts. Nucleic Acids Res 2006;34:3842-52. [PMID: 16899451 PMCID: PMC1557801 DOI: 10.1093/nar/gkl448] [Citation(s) in RCA: 126] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2006] [Revised: 06/12/2006] [Accepted: 06/12/2006] [Indexed: 12/31/2022]  Open
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