1
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Panda S, Phan H, Dunietz EM, Brueggemeyer MT, Hota PK, Siegler MA, Jose A, Bhadra M, Solomon EI, Karlin KD. Intramolecular Phenolic H-Atom Abstraction by a N 3ArOH Ligand-Supported (μ-η 2:η 2-Peroxo)dicopper(II) Species Relevant to the Active Site Function of oxy-Tyrosinase. J Am Chem Soc 2024; 146:14942-14947. [PMID: 38775712 DOI: 10.1021/jacs.4c04402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2024]
Abstract
Synthetic side-on peroxide-bound dicopper(II) (SP) complexes are important for understanding the active site structure/function of many copper-containing enzymes. This work highlights the formation of new {CuII(μ-η2:η2-O22-)CuII} complexes (with electronic absorption and resonance Raman (rR) spectroscopic characterization) using tripodal N3ArOH ligands at -135 °C, which spontaneously participate in intramolecular phenolic H-atom abstraction (HAA). This results in the generation of bis(phenoxyl radical)bis(μ-OH)dicopper(II) intermediates, substantiated by their EPR/UV-vis/rR spectroscopic signatures and crystal structural determination of a diphenoquinone dicopper(I) complex derived from ligand para-C═C coupling. The newly observed chemistry in these ligand-Cu systems is discussed with respect to (a) our Cu-MeAN (tridentate N,N,N',N',N″-pentamethyldipropylenetriamine)-derived model SP species, which was unreactive toward exogenous monophenol addition (J. Am. Chem. Soc. 2012, 134, 8513-8524), emphasizing the impact of intramolecularly tethered ArOH groups, and (b) recent advances in understanding the mechanism of action of the tyrosinase (Ty) enzyme.
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Affiliation(s)
- Sanjib Panda
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Hai Phan
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Eleanor M Dunietz
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | | | - Pradip Kumar Hota
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Maxime A Siegler
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Anex Jose
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Mayukh Bhadra
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Edward I Solomon
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Kenneth D Karlin
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
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2
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Diao D, Baidiuk A, Chaussy L, De Assis Modenez I, Ribas X, Réglier M, Martin-Diaconescu V, Nava P, Simaan AJ, Martinez A, Colomban C. Light-Induced Reactivity Switch at O 2-Activating Bioinspired Copper(I) Complexes. JACS AU 2024; 4:1966-1974. [PMID: 38818064 PMCID: PMC11134348 DOI: 10.1021/jacsau.4c00184] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Revised: 03/28/2024] [Accepted: 03/29/2024] [Indexed: 06/01/2024]
Abstract
Using light to unveil unexplored reactivities of earth-abundant metal-oxygen intermediates is a formidable challenge, given the already remarkable oxidation ability of these species in the ground state. However, the light-induced reactivity of Cu-O2 intermediates still remains unexplored, due to the photoejection of O2 under irradiation. Herein, we describe a photoinduced reactivity switch of bioinspired O2-activating CuI complexes, based on the archetypal tris(2-pyridyl-methyl)amine (TPA) ligand. This report represents a key precedent for light-induced reactivity switch in Cu-O2 chemistry, obtained by positioning C-H substrates in close proximity of the active site. Open and caged CuI complexes displaying an internal aryl ether substrate were evaluated. Under light, a Cu-O2 mediated reaction takes place that induces a selective conversion of the internal aryl ether unit to a phenolate-CH2- moiety with excellent yields. This light-induced transformation displays high selectivity and allows easy postfunctionalization of TPA-based ligands for straightforward preparation of challenging heteroleptic structures. In the absence of light, O2 activation results in the standard oxidative cleavage of the covalently attached substrate. A reaction mechanism that supports a monomeric cupric-superoxide-dependent reactivity promoted by light is proposed on the basis of reactivity studies combined with (TD-) DFT calculations.
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Affiliation(s)
- Donglin Diao
- Aix
Marseille Univ, CNRS, Centrale Marseille, iSm2, 13013 Marseille, France
| | - Anna Baidiuk
- Aix
Marseille Univ, CNRS, Centrale Marseille, iSm2, 13013 Marseille, France
| | - Leo Chaussy
- Aix
Marseille Univ, CNRS, Centrale Marseille, iSm2, 13013 Marseille, France
| | | | - Xavi Ribas
- Institut
de Quimica Computacional i Catalisi (IQCC), Departament de Quimica, Universitat de Girona, Girona E-17003, Catalonia, Spain
| | - Marius Réglier
- Aix
Marseille Univ, CNRS, Centrale Marseille, iSm2, 13013 Marseille, France
| | | | - Paola Nava
- Aix
Marseille Univ, CNRS, Centrale Marseille, iSm2, 13013 Marseille, France
| | - A. Jalila Simaan
- Aix
Marseille Univ, CNRS, Centrale Marseille, iSm2, 13013 Marseille, France
| | - Alexandre Martinez
- Aix
Marseille Univ, CNRS, Centrale Marseille, iSm2, 13013 Marseille, France
| | - Cédric Colomban
- Aix
Marseille Univ, CNRS, Centrale Marseille, iSm2, 13013 Marseille, France
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3
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Hota PK, Jose A, Panda S, Dunietz EM, Herzog AE, Wojcik L, Le Poul N, Belle C, Solomon EI, Karlin KD. Coordination Variations within Binuclear Copper Dioxygen-Derived (Hydro)Peroxo and Superoxo Species; Influences upon Thermodynamic and Electronic Properties. J Am Chem Soc 2024; 146:13066-13082. [PMID: 38688016 PMCID: PMC11161030 DOI: 10.1021/jacs.3c14422] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/02/2024]
Abstract
Copper ion is a versatile and ubiquitous facilitator of redox chemical and biochemical processes. These include the binding of molecular oxygen to copper(I) complexes where it undergoes stepwise reduction-protonation. A detailed understanding of thermodynamic relationships between such reduced/protonated states is key to elucidate the fundamentals of the chemical/biochemical processes involved. The dicopper(I) complex [CuI2(BPMPO-)]1+ {BPMPOH = 2,6-bis{[(bis(2-pyridylmethyl)amino]methyl}-4-methylphenol)} undergoes cryogenic dioxygen addition; further manipulations in 2-methyltetrahydrofuran generate dicopper(II) peroxo [CuII2(BPMPO-)(O22-)]1+, hydroperoxo [CuII2(BPMPO-)(-OOH)]2+, and superoxo [CuII2(BPMPO-)(O2•-)]2+ species, characterized by UV-vis, resonance Raman and electron paramagnetic resonance (EPR) spectroscopies, and cold spray ionization mass spectrometry. An unexpected EPR spectrum for [CuII2(BPMPO-)(O2•-)]2+ is explained by the analysis of its exchange-coupled three-spin frustrated system and DFT calculations. A redox equilibrium, [CuII2(BPMPO-)(O22-)]1+ ⇄ [CuII2(BPMPO-)(O2•-)]2+, is established utilizing Me8Fc+/Cr(η6-C6H6)2, allowing for [CuII2(BPMPO-)(O2•-)]2+/[CuII2(BPMPO-)(O22-)]1+ reduction potential calculation, E°' = -0.44 ± 0.01 V vs Fc+/0, also confirmed by cryoelectrochemical measurements (E°' = -0.40 ± 0.01 V). 2,6-Lutidinium triflate addition to [CuII2(BPMPO-)(O22-)]1+ produces [CuII2(BPMPO-)(-OOH)]2+; using a phosphazene base, an acid-base equilibrium was achieved, pKa = 22.3 ± 0.7 for [CuII2(BPMPO-)(-OOH)]2+. The BDFEOO-H = 80.3 ± 1.2 kcal/mol, as calculated for [CuII2(BPMPO-)(-OOH)]2+; this is further substantiated by H atom abstraction from O-H substrates by [CuII2(BPMPO-)(O2•-)]2+ forming [CuII2(BPMPO-)(-OOH)]2+. In comparison to known analogues, the thermodynamic and spectroscopic properties of [CuII2(BPMPO-)] O2-derived adducts can be accounted for based on chelate ring size variations built into the BPMPO- framework and the resulting enhanced CuII-ion Lewis acidity.
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Affiliation(s)
- Pradip Kumar Hota
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Anex Jose
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Sanjib Panda
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Eleanor M Dunietz
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Austin E Herzog
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Laurianne Wojcik
- UMR CNRS 6521, Université de Bretagne Occidentale, 6 Avenue Le Gorgeu, CS 93837, Brest Cedex 3 29238, France
| | - Nicolas Le Poul
- UMR CNRS 6521, Université de Bretagne Occidentale, 6 Avenue Le Gorgeu, CS 93837, Brest Cedex 3 29238, France
| | - Catherine Belle
- Université Grenoble-Alpes, CNRS, DCM, UMR 5250, Grenoble 38058, France
| | - Edward I Solomon
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Kenneth D Karlin
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
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4
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Jomova K, Alomar SY, Alwasel SH, Nepovimova E, Kuca K, Valko M. Several lines of antioxidant defense against oxidative stress: antioxidant enzymes, nanomaterials with multiple enzyme-mimicking activities, and low-molecular-weight antioxidants. Arch Toxicol 2024; 98:1323-1367. [PMID: 38483584 DOI: 10.1007/s00204-024-03696-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/01/2024] [Accepted: 01/31/2024] [Indexed: 03/27/2024]
Abstract
Reactive oxygen species (ROS) and reactive nitrogen species (RNS) are well recognized for playing a dual role, since they can be either deleterious or beneficial to biological systems. An imbalance between ROS production and elimination is termed oxidative stress, a critical factor and common denominator of many chronic diseases such as cancer, cardiovascular diseases, metabolic diseases, neurological disorders (Alzheimer's and Parkinson's diseases), and other disorders. To counteract the harmful effects of ROS, organisms have evolved a complex, three-line antioxidant defense system. The first-line defense mechanism is the most efficient and involves antioxidant enzymes such as superoxide dismutase (SOD), catalase (CAT), and glutathione peroxidase (GPx). This line of defense plays an irreplaceable role in the dismutation of superoxide radicals (O2•-) and hydrogen peroxide (H2O2). The removal of superoxide radicals by SOD prevents the formation of the much more damaging peroxynitrite ONOO- (O2•- + NO• → ONOO-) and maintains the physiologically relevant level of nitric oxide (NO•), an important molecule in neurotransmission, inflammation, and vasodilation. The second-line antioxidant defense pathway involves exogenous diet-derived small-molecule antioxidants. The third-line antioxidant defense is ensured by the repair or removal of oxidized proteins and other biomolecules by a variety of enzyme systems. This review briefly discusses the endogenous (mitochondria, NADPH, xanthine oxidase (XO), Fenton reaction) and exogenous (e.g., smoking, radiation, drugs, pollution) sources of ROS (superoxide radical, hydrogen peroxide, hydroxyl radical, peroxyl radical, hypochlorous acid, peroxynitrite). Attention has been given to the first-line antioxidant defense system provided by SOD, CAT, and GPx. The chemical and molecular mechanisms of antioxidant enzymes, enzyme-related diseases (cancer, cardiovascular, lung, metabolic, and neurological diseases), and the role of enzymes (e.g., GPx4) in cellular processes such as ferroptosis are discussed. Potential therapeutic applications of enzyme mimics and recent progress in metal-based (copper, iron, cobalt, molybdenum, cerium) and nonmetal (carbon)-based nanomaterials with enzyme-like activities (nanozymes) are also discussed. Moreover, attention has been given to the mechanisms of action of low-molecular-weight antioxidants (vitamin C (ascorbate), vitamin E (alpha-tocopherol), carotenoids (e.g., β-carotene, lycopene, lutein), flavonoids (e.g., quercetin, anthocyanins, epicatechin), and glutathione (GSH)), the activation of transcription factors such as Nrf2, and the protection against chronic diseases. Given that there is a discrepancy between preclinical and clinical studies, approaches that may result in greater pharmacological and clinical success of low-molecular-weight antioxidant therapies are also subject to discussion.
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Affiliation(s)
- Klaudia Jomova
- Department of Chemistry, Faculty of Natural Sciences, Constantine The Philosopher University in Nitra, Nitra, 949 74, Slovakia
| | - Suliman Y Alomar
- Doping Research Chair, Zoology Department, College of Science, King Saud University, 11451, Riyadh, Saudi Arabia
| | - Saleh H Alwasel
- Zoology Department, College of Science, King Saud University, 11451, Riyadh, Saudi Arabia
| | - Eugenie Nepovimova
- Department of Chemistry, Faculty of Sciences, University of Hradec Kralove, 50005, Hradec Kralove, Czech Republic
| | - Kamil Kuca
- Department of Chemistry, Faculty of Sciences, University of Hradec Kralove, 50005, Hradec Kralove, Czech Republic
- Biomedical Research Center, University Hospital Hradec Kralove, Hradec Kralove, Czech Republic
| | - Marian Valko
- Faculty of Chemical and Food Technology, Slovak University of Technology, 812 37, Bratislava, Slovakia.
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5
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Osei MK, Mirzaei S, Mirzaei MS, Valles A, Hernández Sánchez R. Reversible dioxygen uptake at [Cu 4] clusters. Chem Sci 2024; 15:5327-5332. [PMID: 38577358 PMCID: PMC10988628 DOI: 10.1039/d3sc06390a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Accepted: 03/04/2024] [Indexed: 04/06/2024] Open
Abstract
Dioxygen binding solely through non-covalent interactions is rare. In living systems, dioxygen transport takes place via iron or copper-containing biological cofactors. Specifically, a reversible covalent interaction is established when O2 binds to the mono or polynuclear metal center. However, O2 stabilization in the absence of covalent bond formation is challenging and rarely observed. Here, we demonstrate a unique example of reversible non-covalent binding of dioxygen within the cavity of a well-defined synthetic all-Cu(i) tetracopper cluster.
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Affiliation(s)
- Manasseh Kusi Osei
- Department of Chemistry, Rice University 6100 Main St. Houston Texas USA
| | - Saber Mirzaei
- Department of Chemistry, Rice University 6100 Main St. Houston Texas USA
- Department of Chemistry, University of Pittsburgh 219 Parkman Ave. Pittsburgh Pennsylvania 15260 USA
| | - M Saeed Mirzaei
- Department of Chemistry, Rice University 6100 Main St. Houston Texas USA
| | - Agustin Valles
- Department of Chemistry, Rice University 6100 Main St. Houston Texas USA
| | - Raúl Hernández Sánchez
- Department of Chemistry, Rice University 6100 Main St. Houston Texas USA
- Department of Chemistry, University of Pittsburgh 219 Parkman Ave. Pittsburgh Pennsylvania 15260 USA
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6
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Zhang S, Goswami S, Schulz KHG, Gill K, Yin X, Hwang J, Wiese J, Jaffer I, Gil RR, Garcia-Bosch I. Regioselective Hydroxylation of Unsymmetrical Ketones Using Cu, H 2O 2, and Imine Directing Groups via Formation of an Electrophilic Cupric Hydroperoxide Core. J Org Chem 2024; 89:2622-2636. [PMID: 38324058 PMCID: PMC10877615 DOI: 10.1021/acs.joc.3c02647] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2023] [Revised: 01/16/2024] [Accepted: 01/23/2024] [Indexed: 02/08/2024]
Abstract
Herein, we describe the regioselective functionalization of unsymmetrical ketones using imine directing groups, Cu, and H2O2. The C-H hydroxylation of the substrate-ligands derived from 2-substituted benzophenones occurred exclusively at the γ-position of the unsubstituted ring due to the formation of only one imine stereoisomer. Conversely, the imines derived from 4-substituted benzophenones produced E/Z mixtures that upon reacting with Cu and H2O2 led to two γ-C-H hydroxylation products. Contrary to our initial hypothesis, the ratio of the hydroxylation products did not depend on the ratio of the E/Z isomers but on the electrophilicity of the reactive [LCuOOH]1+. A detailed mechanistic analysis suggests a fast isomerization of the imine substrate-ligand binding the CuOOH core before the rate-determining electrophilic aromatic hydroxylation. Varying the benzophenone substituents and/or introducing electron-donating and electron-withdrawing groups on the 4-position of pyridine of the directing group allowed for fine-tuning of the electrophilicity of the mononuclear [LCuOOH]1+ to reach remarkable regioselectivities (up to 91:9 favoring the hydroxylation of the electron-rich arene ring). Lastly, we performed the C-H hydroxylation of alkyl aryl ketones, and like in the unsymmetrical benzophenones, the regioselectivity of the transformations (sp3 vs sp2) could be controlled by varying the electronics of the substrate and/or the directing group.
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Affiliation(s)
- Shuming Zhang
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Sunipa Goswami
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Karl H. G. Schulz
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Karan Gill
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Xinyi Yin
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Jimin Hwang
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Jasmine Wiese
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Isabel Jaffer
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Roberto R. Gil
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Isaac Garcia-Bosch
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
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7
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Munzone A, Eijsink VGH, Berrin JG, Bissaro B. Expanding the catalytic landscape of metalloenzymes with lytic polysaccharide monooxygenases. Nat Rev Chem 2024; 8:106-119. [PMID: 38200220 DOI: 10.1038/s41570-023-00565-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/20/2023] [Indexed: 01/12/2024]
Abstract
Lytic polysaccharide monooxygenases (LPMOs) have an essential role in global carbon cycle, industrial biomass processing and microbial pathogenicity by catalysing the oxidative cleavage of recalcitrant polysaccharides. Despite initially being considered monooxygenases, experimental and theoretical studies show that LPMOs are essentially peroxygenases, using a single copper ion and H2O2 for C-H bond oxygenation. Here, we examine LPMO catalysis, emphasizing key studies that have shaped our comprehension of their function, and address side and competing reactions that have partially obscured our understanding. Then, we compare this novel copper-peroxygenase reaction with reactions catalysed by haem iron enzymes, highlighting the different chemistries at play. We conclude by addressing some open questions surrounding LPMO catalysis, including the importance of peroxygenase and monooxygenase reactions in biological contexts, how LPMOs modulate copper site reactivity and potential protective mechanisms against oxidative damage.
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Affiliation(s)
- Alessia Munzone
- UMR1163 Biodiversité et Biotechnologie Fongiques, INRAE, Aix Marseille University, Marseille, France
| | - Vincent G H Eijsink
- Faculty of Chemistry, Biotechnology, and Food Science, The Norwegian University of Life Sciences (NMBU), Ås, Norway
| | - Jean-Guy Berrin
- UMR1163 Biodiversité et Biotechnologie Fongiques, INRAE, Aix Marseille University, Marseille, France
| | - Bastien Bissaro
- UMR1163 Biodiversité et Biotechnologie Fongiques, INRAE, Aix Marseille University, Marseille, France.
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8
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Li S, Chen Z, Wang M, Yang F, Zhang S, Qiao C, Chu W, Yue W. Ultrasmall Cu 2O@His Nanozymes with RONS Scavenging Capability for Anti-inflammatory Therapy. ACS APPLIED MATERIALS & INTERFACES 2024; 16:3116-3125. [PMID: 38224533 DOI: 10.1021/acsami.3c15083] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/17/2024]
Abstract
High concentrations of reactive oxygen and nitrogen species (RONS) are key characteristics of inflammatory sites. Scavenging RONS at the site of inflammation is an effective therapeutic strategy. This study introduces ultrasmall Cu2O@His nanoparticles with RONS-scavenging ability for the treatment of inflammatory bowel disease (IBD) in mice. The strong coordination between the nitrogen atom in histidine (His) and copper enhances the dispersion and stability of Cu2O@His. Due to their small size and large surface area, Cu2O@His exhibits outstanding RONS-clearing ability. Importantly, Cu2O@His can target mitochondrial sites and repair damaged mitochondria. With excellent dispersion and scavenging RONS ability, Cu2O@His demonstrates good efficacy in treating mouse IBD. This work provides a new paradigm for developing nanozymes with an ultrasmall size and multiple scavenging RONS abilities.
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Affiliation(s)
- Shuaiwen Li
- Department of Chemistry, Key Laboratory of Biomedical Functional Materials, School of Science, China Pharmaceutical University, Nanjing 210009, People's Republic of China
| | - Zihui Chen
- Department of Chemistry, Key Laboratory of Biomedical Functional Materials, School of Science, China Pharmaceutical University, Nanjing 210009, People's Republic of China
| | - Minyu Wang
- Department of Pharmaceutical Microbiology, School of Life Science and Technology, China Pharmaceutical University, Nanjing 210009, People's Republic of China
| | - Feng Yang
- Department of Chemistry, Key Laboratory of Biomedical Functional Materials, School of Science, China Pharmaceutical University, Nanjing 210009, People's Republic of China
| | - Shuqi Zhang
- Department of Chemistry, Key Laboratory of Biomedical Functional Materials, School of Science, China Pharmaceutical University, Nanjing 210009, People's Republic of China
| | - Cairong Qiao
- Department of Chemistry, Key Laboratory of Biomedical Functional Materials, School of Science, China Pharmaceutical University, Nanjing 210009, People's Republic of China
| | - Weihua Chu
- Department of Pharmaceutical Microbiology, School of Life Science and Technology, China Pharmaceutical University, Nanjing 210009, People's Republic of China
| | - Wanqing Yue
- Department of Chemistry, Key Laboratory of Biomedical Functional Materials, School of Science, China Pharmaceutical University, Nanjing 210009, People's Republic of China
- Key Laboratory of Drug Quality Control and Pharmacovigilance (China Pharmaceutical University), Ministry of Education, Nanjing 210009, People's Republic of China
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9
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Mendieta A, Álvarez-Idaboy JR, Ugalde-Saldívar VM, Flores-Álamo M, Armenta A, Ferrer-Sueta G, Gasque L. Role of Imidazole and Chelate Ring Size in Copper Oxidation Catalysts: An Experimental and Theoretical Study. Inorg Chem 2023; 62:16677-16690. [PMID: 37792328 DOI: 10.1021/acs.inorgchem.3c01236] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/05/2023]
Abstract
In this work, the structural, solution, electrochemical, and catalytic properties of the complexes with ligands derived from imidazole and pyridines were studied. A comparative study of five bioinspired copper catalysts with or without coordinated imidazole and with different chelate ring sizes is presented. Catalytic efficiency on the oxidation of 3,5-di-tert-butylcatechol (DTBC) and ortho-aminophenol (OAP) in a MeOH/H2O medium was assessed by means of the Michaelis-Menten model. Catalysts comprising imidazole-containing ligands and/or a six-membered chelate ring proved to be more efficient in both oxidation reactions. Determination of stability constants and electrochemical parameters of the copper complexes supported the explanation of the catalytic behavior. A catalytic cycle similar for both reactions has been proposed. The results of density functional theory (DFT) free energy calculations for all five complexes and both catalytic reactions agree with the experimental results.
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Affiliation(s)
- Alan Mendieta
- Facultad de Química, Universidad Nacional Autónoma de México, Avenida Universidad 3000, CDMX 04510, México
| | - Juan Raúl Álvarez-Idaboy
- Facultad de Química, Universidad Nacional Autónoma de México, Avenida Universidad 3000, CDMX 04510, México
| | - Víctor M Ugalde-Saldívar
- Facultad de Química, Universidad Nacional Autónoma de México, Avenida Universidad 3000, CDMX 04510, México
| | - Marcos Flores-Álamo
- Facultad de Química, Universidad Nacional Autónoma de México, Avenida Universidad 3000, CDMX 04510, México
| | - Alfonso Armenta
- Facultad de Química, Universidad Nacional Autónoma de México, Avenida Universidad 3000, CDMX 04510, México
| | - Gerardo Ferrer-Sueta
- Laboratorio de Fisicoquímica Biológica, Instituto de Química Biológica, Facultad de Ciencias, Universidad de la República, Iguá 4225, Montevideo, UY 11400, Uruguay
| | - Laura Gasque
- Facultad de Química, Universidad Nacional Autónoma de México, Avenida Universidad 3000, CDMX 04510, México
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10
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Nguyen BX, VandeVen W, MacNeil GA, Zhou W, Paterson AR, Walsby CJ, Chiang L. High-Valent Ni and Cu Complexes of a Tetraanionic Bis(amidateanilido) Ligand. Inorg Chem 2023; 62:15180-15194. [PMID: 37676794 DOI: 10.1021/acs.inorgchem.3c02358] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/09/2023]
Abstract
High-valent metal species are often invoked as intermediates during enzymatic and synthetic catalytic cycles. Anionic donors are often required to stabilize such high-valent states by forming strong bonds with the Lewis acidic metal centers while decreasing their oxidation potentials. In this report, we discuss the synthesis of two high-valent metal complexes [ML]+ in which the NiIII and CuIII centers are ligated by a new tetradentate, tetraanionic bis(amidateanilido) ligand. [ML]+, obtained via chemical oxidation of ML, exhibits UV-vis-NIR, EPR, and XANES spectra characteristic of square planar, high-valent MIII species, suggesting the locus of oxidation for both [ML]+ is predominantly metal-based. This is supported by theoretical analyses, which also support the observed visible transitions as ligand-to-metal charge transfer transitions characteristic of square planar, high-valent MIII species. Notably, [ML]+ can also be obtained via O2 oxidation of ML due to its remarkably negative oxidation potentials (CuL/[CuL]+: -1.16 V, NiL/[NiL]+: -1.01 V vs Fc/Fc+ in MeCN). This demonstrates the exceptionally strong donating nature of the tetraanionic bis(amidateanilido) ligation and its ability to stabilize high-valent metal centers..
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Affiliation(s)
- Bach X Nguyen
- Department of Chemistry, University of the Fraser Valley, Abbotsford, British Columbia V2S 7M8, Canada
- Department of Chemistry, Simon Fraser University, Burnaby, British Columba V5A 1S6, Canada
| | - Warren VandeVen
- Department of Chemistry, Simon Fraser University, Burnaby, British Columba V5A 1S6, Canada
| | - Gregory A MacNeil
- Department of Chemistry, Simon Fraser University, Burnaby, British Columba V5A 1S6, Canada
| | - Wen Zhou
- Department of Chemistry, Simon Fraser University, Burnaby, British Columba V5A 1S6, Canada
| | - Alisa R Paterson
- Canadian Light Source, 44 Innovation Boulevard, Saskatoon, Saskatchewan S7N 2 V3, Canada
| | - Charles J Walsby
- Department of Chemistry, Simon Fraser University, Burnaby, British Columba V5A 1S6, Canada
| | - Linus Chiang
- Department of Chemistry, University of the Fraser Valley, Abbotsford, British Columbia V2S 7M8, Canada
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11
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Hall K, Joseph C, Ayuso-Fernández I, Tamhankar A, Rieder L, Skaali R, Golten O, Neese F, Røhr ÅK, Jannuzzi SAV, DeBeer S, Eijsink VGH, Sørlie M. A Conserved Second Sphere Residue Tunes Copper Site Reactivity in Lytic Polysaccharide Monooxygenases. J Am Chem Soc 2023; 145:18888-18903. [PMID: 37584157 PMCID: PMC10472438 DOI: 10.1021/jacs.3c05342] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2023] [Indexed: 08/17/2023]
Abstract
Lytic polysaccharide monooxygenases (LPMOs) are powerful monocopper enzymes that can activate strong C-H bonds through a mechanism that remains largely unknown. Herein, we investigated the role of a conserved glutamine/glutamate in the second coordination sphere. Mutation of the Gln in NcAA9C to Glu, Asp, or Asn showed that the nature and distance of the headgroup to the copper fine-tune LPMO functionality and copper reactivity. The presence of Glu or Asp close to the copper lowered the reduction potential and decreased the ratio between the reduction and reoxidation rates by up to 500-fold. All mutants showed increased enzyme inactivation, likely due to changes in the confinement of radical intermediates, and displayed changes in a protective hole-hopping pathway. Electron paramagnetic resonance (EPR) and X-ray absorption spectroscopic (XAS) studies gave virtually identical results for all NcAA9C variants, showing that the mutations do not directly perturb the Cu(II) ligand field. DFT calculations indicated that the higher experimental reoxidation rate observed for the Glu mutant could be reconciled if this residue is protonated. Further, for the glutamic acid form, we identified a Cu(III)-hydroxide species formed in a single step on the H2O2 splitting path. This is in contrast to the Cu(II)-hydroxide and hydroxyl intermediates, which are predicted for the WT and the unprotonated glutamate variant. These results show that this second sphere residue is a crucial determinant of the catalytic functioning of the copper-binding histidine brace and provide insights that may help in understanding LPMOs and LPMO-inspired synthetic catalysts.
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Affiliation(s)
- Kelsi
R. Hall
- Faculty
of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), 1432, Ås, Norway
| | - Chris Joseph
- Max
Planck Institute for Chemical Energy Conversion, Stiftstraße 34-36, 45470 Mülheim an der Ruhr, Germany
| | - Iván Ayuso-Fernández
- Faculty
of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), 1432, Ås, Norway
| | - Ashish Tamhankar
- Max
Planck Institute for Chemical Energy Conversion, Stiftstraße 34-36, 45470 Mülheim an der Ruhr, Germany
| | - Lukas Rieder
- Institute
for Molecular Biotechnology, Graz University
of Technology, 8010, Graz, Austria
| | - Rannei Skaali
- Faculty
of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), 1432, Ås, Norway
| | - Ole Golten
- Faculty
of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), 1432, Ås, Norway
| | - Frank Neese
- Max-Planck-Institut
für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
| | - Åsmund K. Røhr
- Faculty
of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), 1432, Ås, Norway
| | - Sergio A. V. Jannuzzi
- Max
Planck Institute for Chemical Energy Conversion, Stiftstraße 34-36, 45470 Mülheim an der Ruhr, Germany
| | - Serena DeBeer
- Max
Planck Institute for Chemical Energy Conversion, Stiftstraße 34-36, 45470 Mülheim an der Ruhr, Germany
| | - Vincent G. H. Eijsink
- Faculty
of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), 1432, Ås, Norway
| | - Morten Sørlie
- Faculty
of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), 1432, Ås, Norway
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12
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Kim B, Karlin KD. Ligand-Copper(I) Primary O 2-Adducts: Design, Characterization, and Biological Significance of Cupric-Superoxides. Acc Chem Res 2023; 56:2197-2212. [PMID: 37527056 PMCID: PMC11152209 DOI: 10.1021/acs.accounts.3c00297] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/03/2023]
Abstract
In this Account, we overview and highlight synthetic bioinorganic chemistry focused on initial adducts formed from the reaction of reduced ligand-copper(I) coordination complexes with molecular oxygen, reactions that produce ligand-CuII(O2•-) complexes (O2•- ≡ superoxide anion). We provide mostly a historical perspective, starting in the Karlin research group in the 1980s, emphasizing the ligand design and ligand effects, structure, and spectroscopy of these O2 adducts and subsequent further reactivity with substrates, including the interaction with a second ligand-CuI complex to form binuclear species. The Account emphasizes the approach, evolution, and results obtained in the Karlin group, a synthetic bioinorganic research program inspired by the state of knowledge and insights obtained on enzymes possessing copper ion active sites which process molecular oxygen. These constitute an important biochemistry for all levels/types of organisms, bacteria, fungi, insects, and mammals, including humans.Copper is earth abundant, and its redox properties in complexes allow for facile CuII/CuI interconversions. Simple salts or coordination complexes have been well known to serve as oxidants for the stoichiometric or catalytic oxidation or oxygenation (i.e., O-atom insertion) of organic substrates. Thus, copper dioxygen- or peroxide-centered synthetic bioinorganic studies provide strong relevance and potential application to synthesis or even the development of cathodic catalysts for dioxygen reduction to hydrogen peroxide or water, as in fuel cells. The Karlin group's focus however was primarily oriented toward bioinorganic chemistry with the goal to provide fundamental insights into the nature of copper-dioxygen adducts and further reduced and/or protonated derivatives, species likely occurring in enzyme turnover or related in one or more aspects of formation, structure, spectroscopic properties, and scope of reactivity toward organic/biochemical substrates.Prior to this time, the 1980s, O2 adducts of redox-active first-row transition-metal ions focused on iron, such as the porphyrinate-Fe centers occurring in the oxygen carrier proteins myoglobin and hemoglobin and that determined to occur in cytochrome P-450 monooxygenase turnover. Deoxy (i.e., reduced Fe(II)) heme proteins react with O2, giving FeIII-superoxo complexes (preferably referred to by traditional biochemists as ferrous-oxy species). And, it was in the 1970s that great strides were made by synthetic chemists in generating hemes capable of forming O2 adducts, their physiochemical characterization providing critical insights to enzyme (bio)chemistry and providing ideas and important goals leading to countless person years of future research.
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Affiliation(s)
- Bohee Kim
- Department of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Kenneth D Karlin
- Department of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218, United States
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13
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Kulandaivel S, Lin CH, Yeh YC. A bioinspired copper-based coordination polymer for the detection of pheochromocytoma biomarkers. Talanta 2023; 255:124206. [PMID: 36563506 DOI: 10.1016/j.talanta.2022.124206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Revised: 12/15/2022] [Accepted: 12/17/2022] [Indexed: 12/23/2022]
Abstract
Oxidase-mimicking (catechol oxidase/laccase) nanozymes provide outstanding specificity in the detection of epinephrine (Epi) for the assessment of pheochromocytoma; however, epinephrine (Epi) and norepinephrine (NE) co-existing in the same systems will reduce the selectivity of the biosensor. In the current study, we synthesized copper-based coordination polymer (Cu-CP) nanozymes capable of accelerating the oxidation of Epi with high specificity. Furthermore, the Cu-CP is able to detect Epi over a wide linear range of 0.5-100 μM with a low detection limit of 0.36 μM while providing excellent stability and recyclability. Furthermore, we employed colorimetric and fluorescence signals for sequential detection of the coexistence of Epi and NE for use in tracking the treatment outcomes of patients with pheochromocytoma. Experiments using artificial urine further confirmed the efficacy of the proposed system.
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Affiliation(s)
| | - Chia-Her Lin
- Department of Chemistry, National Taiwan Normal University, Taipei, 116, Taiwan.
| | - Yi-Chun Yeh
- Department of Chemistry, National Taiwan Normal University, Taipei, 116, Taiwan.
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14
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Wu Y, Zhao C, Su Y, Shaik S, Lai W. Mechanistic Insight into Peptidyl-Cysteine Oxidation by the Copper-Dependent Formylglycine-Generating Enzyme. Angew Chem Int Ed Engl 2023; 62:e202212053. [PMID: 36545867 DOI: 10.1002/anie.202212053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2022] [Revised: 12/21/2022] [Accepted: 12/21/2022] [Indexed: 12/24/2022]
Abstract
The copper-dependent formylglycine-generating enzyme (FGE) catalyzes the oxygen-dependent oxidation of specific peptidyl-cysteine residues to formylglycine. Our QM/MM calculations provide a very likely mechanism for this transformation. The reaction starts with dioxygen binding to the tris-thiolate CuI center to form a triplet CuII -superoxide complex. The rate-determining hydrogen atom abstraction involves a triplet-singlet crossing to form a CuII -OOH species that couples with the substrate radical, leading to a CuI -alkylperoxo intermediate. This is accompanied by proton transfer from the hydroperoxide to the S atom of the substrate via a nearby water molecule. The subsequent O-O bond cleavage is coupled with the C-S bond breaking that generates the formylglycine and a CuII -oxyl complex. Moreover, our results suggest that the aldehyde oxygen of the final product originates from O2 , which will be useful for future experimental work.
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Affiliation(s)
- Yao Wu
- Key Laboratory of Advanced Light Conversion Materials and Biophotonics, Department of Chemistry, Renmin University of China, Beijing, 100872, China
| | - Cong Zhao
- Key Laboratory of Advanced Light Conversion Materials and Biophotonics, Department of Chemistry, Renmin University of China, Beijing, 100872, China
| | - Yanzhuang Su
- Key Laboratory of Advanced Light Conversion Materials and Biophotonics, Department of Chemistry, Renmin University of China, Beijing, 100872, China
| | - Sason Shaik
- Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem, 91904, Israel
| | - Wenzhen Lai
- Key Laboratory of Advanced Light Conversion Materials and Biophotonics, Department of Chemistry, Renmin University of China, Beijing, 100872, China
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15
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Interplay of electronic and geometric structure on Cu phenanthroline, bipyridine and derivative complexes, synthesis, characterization, and reactivity towards oxygen. Coord Chem Rev 2023. [DOI: 10.1016/j.ccr.2022.214943] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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16
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Aoun P, Nyssen N, Richard S, Zhurkin F, Jabin I, Colasson B, Reinaud O. Selective Metal-ion Complexation of a Biomimetic Calix[6]arene Funnel Cavity Functionalized with Phenol or Quinone. Chemistry 2023; 29:e202202934. [PMID: 36321640 PMCID: PMC10107959 DOI: 10.1002/chem.202202934] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2022] [Indexed: 11/06/2022]
Abstract
In the biomimetic context, many studies have evidenced the importance of the 1st and 2nd coordination sphere of a metal ion for controlling its properties. Here, we propose to evaluate a yet poorly explored aspect, which is the nature of the cavity that surrounds the metal labile site. Three calix[6]arene-based aza-ligands are compared, that differ only by the nature of cavity walls, anisole, phenol or quinone (LOMe , LOH and LQ ). Monitoring ligand exchange of their ZnII complexes evidenced important differences in the metal ion relative affinities for nitriles, halides or carboxylates. It also showed a possible sharp kinetic control on both, metal ion binding and ligand exchange. Hence, this study supports the observations reported on biological systems, highlighting that the substitution of an amino-acid residue of the enzyme active site, at remote distance of the metal ion, can have strong impacts on metal ion lability, substrate/product exchange or selectivity.
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Affiliation(s)
- Pamela Aoun
- Laboratoire de Chimie et de Biochimie Pharmacologiques et Toxicologiques, CNRS UMR 8601 Université Paris Cité, 45 Rue des Saints Pères, 75006, Paris, France
| | - Nicolas Nyssen
- Laboratoire de Chimie et de Biochimie Pharmacologiques et Toxicologiques, CNRS UMR 8601 Université Paris Cité, 45 Rue des Saints Pères, 75006, Paris, France.,Laboratoire de Chimie Organique, Université libre de Bruxelles (ULB), Avenue F. D. Roosevelt 50, CP160/06, B 1050, Brussels, Belgium
| | - Sarah Richard
- Laboratoire de Chimie et de Biochimie Pharmacologiques et Toxicologiques, CNRS UMR 8601 Université Paris Cité, 45 Rue des Saints Pères, 75006, Paris, France
| | - Fedor Zhurkin
- Laboratoire de Chimie et de Biochimie Pharmacologiques et Toxicologiques, CNRS UMR 8601 Université Paris Cité, 45 Rue des Saints Pères, 75006, Paris, France
| | - Ivan Jabin
- Laboratoire de Chimie Organique, Université libre de Bruxelles (ULB), Avenue F. D. Roosevelt 50, CP160/06, B 1050, Brussels, Belgium
| | - Benoit Colasson
- Laboratoire de Chimie et de Biochimie Pharmacologiques et Toxicologiques, CNRS UMR 8601 Université Paris Cité, 45 Rue des Saints Pères, 75006, Paris, France
| | - Olivia Reinaud
- Laboratoire de Chimie et de Biochimie Pharmacologiques et Toxicologiques, CNRS UMR 8601 Université Paris Cité, 45 Rue des Saints Pères, 75006, Paris, France
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17
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Kipouros I, Solomon EI. New mechanistic insights into coupled binuclear copper monooxygenases from the recent elucidation of the ternary intermediate of tyrosinase. FEBS Lett 2023; 597:65-78. [PMID: 36178078 PMCID: PMC9839588 DOI: 10.1002/1873-3468.14503] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2022] [Revised: 09/16/2022] [Accepted: 09/20/2022] [Indexed: 01/17/2023]
Abstract
Tyrosinase is the most predominant member of the coupled binuclear copper (CBC) protein family. The recent trapping and spectroscopic definition of the elusive catalytic ternary intermediate (enzyme/O2 /monophenol) of tyrosinase dictates a monooxygenation mechanism that revises previous proposals and involves cleavage of the μ-η2 :η2 -peroxide dicopper(II) O-O bond to accept the phenolic proton, followed by monophenolate coordination to copper concomitant with aromatic hydroxylation by the non-protonated μ-oxo. Here, we compare and contrast previously proposed and current mechanistic models for monophenol monooxygenation of tyrosinase. Next, we discuss how these recent insights provide new opportunities towards uncovering structure-function relationships in CBC enzymes, as well as understanding fundamental principles for O2 activation and reactivity by bioinorganic active sites.
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Affiliation(s)
| | - Edward I Solomon
- Department of Chemistry, Stanford University, CA, USA
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, CA, USA
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18
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Karmalkar DG, Larson VA, Malik DD, Lee YM, Seo MS, Kim J, Vasiliauskas D, Shearer J, Lehnert N, Nam W. Preparation and Characterization of a Formally Ni IV-Oxo Complex with a Triplet Ground State and Application in Oxidation Reactions. J Am Chem Soc 2022; 144:22698-22712. [PMID: 36454200 DOI: 10.1021/jacs.2c10196] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
Abstract
High-valent first-row transition-metal-oxo complexes are important intermediates in biologically and chemically relevant oxidative transformations of organic molecules and in the water splitting reaction in (artificial) photosynthesis. While high-valent Fe- and Mn-oxo complexes have been characterized in detail, much less is known about their analogues with late transition metals. In this study, we present the synthesis and detailed characterization of a unique mononuclear terminal Ni-O complex. This compound, [Ni(TAML)(O)(OH)]3-, is characterized by an intense charge-transfer (CT) band around 730 nm and has an St = 1 ground state, as determined by magnetic circular dichroism spectroscopy. From extended X-ray absorption fine structure (EXAFS), the Ni-O bond distance is 1.84 Å. Ni K edge XAS data indicate that the complex contains a Ni(III) center, which results from an unusually large degree of Ni-O π-bond inversion, with one hole located on the oxo ligand. The complex is therefore best described as a low-spin Ni(III) complex (S = 1/2) with a bound oxyl (O•-) ligand (S = 1/2), where the spins of Ni and oxyl are ferromagnetically coupled, giving rise to the observed St = 1 ground state. This bonding description is roughly equivalent to the presence of a Ni-O single (σ) bond. Reactivity studies show that [Ni(TAML)(O)(OH)]3- is a strong oxidant capable of oxidizing thioanisole and styrene derivatives with large negative ρ values in the Hammett plot, indicating its electrophilic nature. The intermediate also shows high reactivity in C-H bond activation of hydrocarbons with a kinetic isotope effect of 7.0(3) in xanthene oxidation.
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Affiliation(s)
- Deepika G Karmalkar
- Department of Chemistry and Nano Science, Ewha Womans University, Seoul 03760, Korea
| | - Virginia A Larson
- Department of Chemistry and Department of Biophysics, University of Michigan, Ann Arbor, Michigan 48109-1055, United States
| | - Deesha D Malik
- Department of Chemistry and Nano Science, Ewha Womans University, Seoul 03760, Korea
| | - Yong-Min Lee
- Department of Chemistry and Nano Science, Ewha Womans University, Seoul 03760, Korea
| | - Mi Sook Seo
- Department of Chemistry and Nano Science, Ewha Womans University, Seoul 03760, Korea
| | - Jin Kim
- Department of Chemistry and Nano Science, Ewha Womans University, Seoul 03760, Korea
| | - Dovydas Vasiliauskas
- Department of Chemistry, Trinity University, San Antonio, Texas 78212-7200, United States
| | - Jason Shearer
- Department of Chemistry, Trinity University, San Antonio, Texas 78212-7200, United States
| | - Nicolai Lehnert
- Department of Chemistry and Department of Biophysics, University of Michigan, Ann Arbor, Michigan 48109-1055, United States
| | - Wonwoo Nam
- Department of Chemistry and Nano Science, Ewha Womans University, Seoul 03760, Korea
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19
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Zhang Y, Li Z, Gao F, Ma Z, Li W, Gao X, Fan G. Two amino acid Cu (II)-MOFs via one-pot method: Exhibiting good catalytic effect on the thermal decomposition of ammonium perchlorate and hexogen. J SOLID STATE CHEM 2022. [DOI: 10.1016/j.jssc.2022.123551] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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20
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Nadarkhani S, Golchoubian H, Shirvan A. Synthesis, Crystal structure, and Chromotropism properties of Dihalo N-2-ethanolpicolylamine Copper(II). J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.134801] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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21
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Gamboa‐Ramirez S, Faure B, Réglier M, Simaan AJ, Orio M. Computational Insights of Selective Intramolecular O-atom Transfer Mediated by Bioinspired Copper Complexes. Chemistry 2022; 28:e202202206. [PMID: 36044615 PMCID: PMC9828472 DOI: 10.1002/chem.202202206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Indexed: 01/12/2023]
Abstract
The stereoselective copper-mediated hydroxylation of intramolecular C-H bonds from tridentate ligands is reinvestigated using DFT calculations. The computational study aims at deciphering the mechanism of C-H hydroxylation obtained after reaction of Cu(I) precursors with dioxygen, using ligands bearing either activated (L1 ) or non-activated (L2 ) C-H bonds. Configurational analysis allows rationalization of the experimentally observed regio- and stereoselectivity. The computed mechanism involves the formation of a side-on peroxide species (P) in equilibrium with the key intermediate bis-(μ-oxo) isomer (O) responsible for the C-H activation step. The P/O equilibrium yields the same activation barrier for the two complexes. However, the main difference between the two model complexes is observed during the C-H activation step, where the complex bearing the non-activated C-H bonds yields a higher energy barrier, accounting for the experimental lack of reactivity of this complex under those conditions.
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Affiliation(s)
- Stefani Gamboa‐Ramirez
- Aix Marseille Univ, CNRS Centrale Marseille, iSm2, UMR 731352 Av. Escadrille Normandie Niemen13013MarseilleFrance
| | - Bruno Faure
- Aix Marseille Univ, CNRS Centrale Marseille, iSm2, UMR 731352 Av. Escadrille Normandie Niemen13013MarseilleFrance
| | - Marius Réglier
- Aix Marseille Univ, CNRS Centrale Marseille, iSm2, UMR 731352 Av. Escadrille Normandie Niemen13013MarseilleFrance
| | - A. Jalila Simaan
- Aix Marseille Univ, CNRS Centrale Marseille, iSm2, UMR 731352 Av. Escadrille Normandie Niemen13013MarseilleFrance
| | - Maylis Orio
- Aix Marseille Univ, CNRS Centrale Marseille, iSm2, UMR 731352 Av. Escadrille Normandie Niemen13013MarseilleFrance
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22
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Li R, Khan FST, Tapia M, Hematian S. Oxygenation of copper(I) complexes containing fluorine tagged tripodal tetradentate chelates: significant ligand electronic effects. J COORD CHEM 2022. [DOI: 10.1080/00958972.2022.2107429] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2022]
Affiliation(s)
- Runzi Li
- Department of Chemistry and Biochemistry, University of North Carolina at Greensboro, Greensboro, NC, USA
| | - Firoz Shah Tuglak Khan
- Department of Chemistry and Biochemistry, University of North Carolina at Greensboro, Greensboro, NC, USA
| | - Marcos Tapia
- Department of Chemistry and Biochemistry, University of North Carolina at Greensboro, Greensboro, NC, USA
| | - Shabnam Hematian
- Department of Chemistry and Biochemistry, University of North Carolina at Greensboro, Greensboro, NC, USA
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23
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Borrego E, Tiessler-Sala L, Lázaro JJ, Caballero A, Pérez PJ, Lledós A. Direct Benzene Hydroxylation with Dioxygen Induced by Copper Complexes: Uncovering the Active Species by DFT Calculations. Organometallics 2022; 41:1892-1904. [PMID: 35936655 PMCID: PMC9344391 DOI: 10.1021/acs.organomet.2c00202] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
![]()
The direct oxidation of benzene into phenol using molecular
oxygen
at very mild temperatures can be promoted in the presence of the copper
complex TpBr3Cu(NCMe) in the homogeneous phase in the presence
of ascorbic acid as the source of protons and electrons. The stoichiometric
nature, relative to copper, of this transformation prompted a thorough
DFT study in order to understand the reaction pathway. As a result,
the dinuclear species TpBr3CuII(μ-O•)(μ-OH)CuIITpBr3 is proposed
as the relevant structure which is responsible for activating the
arene C–H bond leading to phenol formation.
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Affiliation(s)
- Elena Borrego
- Laboratorio de Catálisis Homogénea, Unidad Asociada al CSIC, CIQSO-Centro de Investigación en Química Sostenible and Departamento de Química, Universidad de Huelva, Huelva 21007, Spain
| | - Laura Tiessler-Sala
- Departament de Química, Universitat Autònoma de Barcelona, Cerdanyola del
Vallès, Barcelona 08193, Spain
| | - Jesus J. Lázaro
- Cepsa Research Center, Compañía Española de Petróleos S.A., Alcalá de Henares, Madrid 28850, Spain
| | - Ana Caballero
- Laboratorio de Catálisis Homogénea, Unidad Asociada al CSIC, CIQSO-Centro de Investigación en Química Sostenible and Departamento de Química, Universidad de Huelva, Huelva 21007, Spain
| | - Pedro J. Pérez
- Laboratorio de Catálisis Homogénea, Unidad Asociada al CSIC, CIQSO-Centro de Investigación en Química Sostenible and Departamento de Química, Universidad de Huelva, Huelva 21007, Spain
| | - Agustí Lledós
- Departament de Química, Universitat Autònoma de Barcelona, Cerdanyola del
Vallès, Barcelona 08193, Spain
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24
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Structural elucidation and cytotoxicity profile of neocuproine-Cu(II) and Cu(I)-based chemotherapeutic agents: Effect of picric acid-derived cocrystals. Polyhedron 2022. [DOI: 10.1016/j.poly.2022.115848] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
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25
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Broadband Dielectric Spectroscopic Detection of Ethanol: A Side-by-Side Comparison of ZnO and HKUST-1 MOFs as Sensing Media. CHEMOSENSORS 2022. [DOI: 10.3390/chemosensors10070241] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
The most common gas sensors are based on chemically induced changes in electrical resistivity and necessarily involve making imperfect electrical contacts to the sensing materials, which introduce errors into the measurements. We leverage thermal- and chemical-induced changes in microwave propagation characteristics (i.e., S-parameters) to compare ZnO and surface-anchored metal–organic-framework (HKUST-1 MOF) thin films as sensing materials for detecting ethanol vapor, a typical volatile organic compound (VOC), at low temperatures. We show that the microwave propagation technique can detect ethanol at relatively low temperatures (<100 °C), and afford new mechanistic insights that are inaccessible with the traditional dc-resistance-based measurements. In addition, the metrological technique avoids the inimical measurand distortions due to parasitic electrical effects inherent in the conductometric volatile organic compound detection.
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26
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Chen M, Ao W, Bai J, Li P, Wei W, Pang S, Yang X. Dual-emission fluorescent nanoprobe based on Ag nanoclusters for sensitive detection of Cu(II). NANOTECHNOLOGY 2022; 33:345501. [PMID: 35576900 DOI: 10.1088/1361-6528/ac6ff1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Accepted: 05/15/2022] [Indexed: 06/15/2023]
Abstract
Noble metal nanoclusters have attracted much attention because of their excellent fluorescence properties. In this work, we demonstrated a dual-emission fluorescent nanocomposite based on silver nanoclusters. First, we synthesized positively charged His-AgNCs, which emits intense blue light, and then Ag nanoclusters with stable red emission were synthesized using DHLA as the ligand. Thus a dual-emission fluorescent nanoprobe was successfully obtained through electrostatic self-assembly, with the advantages of good water solubility and excellent stability. Based on the intensity ratio of the two emission peaks, the nanoprobe can be used for selective and sensitive detection of copper ions, and presents a good linear relationship within a certain concentration range. In addition, we also designed a polymer film, and our dual-emission nanoprobe was successfully loaded onto it, which means that the visual detection of copper ions is possible. This indicates that our dual-emission fluorescent nanoprobe has potential application prospects in environmental analysis, medical diagnosis, biological detection, etc.
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Affiliation(s)
- Ming Chen
- School of Chemical Engineering, Advanced Institute of Materials Science, Changchun University of Technology, Changchun, 130012, People's Republic of China
| | - Wei Ao
- School of Chemical Engineering, Advanced Institute of Materials Science, Changchun University of Technology, Changchun, 130012, People's Republic of China
| | - Jinna Bai
- School of Chemical Engineering, Advanced Institute of Materials Science, Changchun University of Technology, Changchun, 130012, People's Republic of China
| | - Pengjun Li
- School of Chemical Engineering, Advanced Institute of Materials Science, Changchun University of Technology, Changchun, 130012, People's Republic of China
| | - Wei Wei
- School of Chemical Engineering, Advanced Institute of Materials Science, Changchun University of Technology, Changchun, 130012, People's Republic of China
| | - Shujie Pang
- School of Chemical Engineering, Advanced Institute of Materials Science, Changchun University of Technology, Changchun, 130012, People's Republic of China
| | - Xudong Yang
- School of Chemical Engineering, Advanced Institute of Materials Science, Changchun University of Technology, Changchun, 130012, People's Republic of China
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Theoretical perspective on mononuclear copper-oxygen mediated C–H and O–H activations: A comparison between biological and synthetic systems. CHINESE JOURNAL OF CATALYSIS 2022. [DOI: 10.1016/s1872-2067(21)63974-8] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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28
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Ferreira P, Fernandes P, Ramos M. The archaeal non-heme iron-containing Sulfur Oxygenase Reductase. Coord Chem Rev 2022. [DOI: 10.1016/j.ccr.2021.214358] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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29
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Rotärmel T, Becker J, Schindler S. Syntheses and investigation of metal complexes with macrocyclic polythioether ligands. Faraday Discuss 2022; 234:70-85. [PMID: 35171171 DOI: 10.1039/d1fd00062d] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Copper(I) complexes with the macrocyclic thioether ligands 1,4,8,11-tetrathiacyclotetradecane (tetrathiacyclam, 14-S4) and 1,8-dithia-4,11-diazacyclotetradecane (dithiacyclam, 14-N2S2) were synthesised and structurally characterised. While the copper(I) complexes showed no reactivity towards dioxygen, the formation of "dioxygen adduct complexes" could be spectroscopically detected with ozone using low temperature stopped-flow techniques. Furthermore, it was possible to synthesise and characterise iron(II) and cobalt(II) complexes with the tetrathiacyclam ligand. No "dioxygen adduct" intermediates were observed when these complexes were reacted with dioxygen or ozone. Depending on the reaction conditions, the coordination of the metal ions could be controlled (endo- vs. exo-coordination and cis- vs. trans-coordination) and in addition to mononuclear complexes, also coordination polymers were obtained.
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Affiliation(s)
- Thomas Rotärmel
- Institut für Anorganische und Analytische Chemie, Justus-Liebig-Universität Gießen, Heinrich-Buff-Ring 17, 35392 Gießen, Germany.
| | - Jonathan Becker
- Institut für Anorganische und Analytische Chemie, Justus-Liebig-Universität Gießen, Heinrich-Buff-Ring 17, 35392 Gießen, Germany.
| | - Siegfried Schindler
- Institut für Anorganische und Analytische Chemie, Justus-Liebig-Universität Gießen, Heinrich-Buff-Ring 17, 35392 Gießen, Germany.
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30
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Copper monooxygenase reactivity: Do consensus mechanisms accurately reflect experimental observations? J Inorg Biochem 2022; 231:111780. [DOI: 10.1016/j.jinorgbio.2022.111780] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2021] [Revised: 02/21/2022] [Accepted: 02/23/2022] [Indexed: 11/21/2022]
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31
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Petrillo A, Hoffmann A, Becker J, Herres‐Pawlis S, Schindler S. Copper Mediated Intramolecular vs. Intermolecular Oxygenations: The Spacer makes the Difference! Eur J Inorg Chem 2022. [DOI: 10.1002/ejic.202100970] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Alexander Petrillo
- Institute of Inorganic and Analytical Chemistry Justus-Liebig-University Giessen Heinrich-Buff-Ring 17 35392 Giessen Germany
| | - Alexander Hoffmann
- Institute of Inorganic Chemistry RWTH Aachen University Landoltweg 1a 52074 Aachen Germany
| | - Jonathan Becker
- Institute of Inorganic and Analytical Chemistry Justus-Liebig-University Giessen Heinrich-Buff-Ring 17 35392 Giessen Germany
| | - Sonja Herres‐Pawlis
- Institute of Inorganic Chemistry RWTH Aachen University Landoltweg 1a 52074 Aachen Germany
| | - Siegfried Schindler
- Institute of Inorganic and Analytical Chemistry Justus-Liebig-University Giessen Heinrich-Buff-Ring 17 35392 Giessen Germany
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32
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Bromberg Y, Aptekmann AA, Mahlich Y, Cook L, Senn S, Miller M, Nanda V, Ferreiro DU, Falkowski PG. Quantifying structural relationships of metal-binding sites suggests origins of biological electron transfer. SCIENCE ADVANCES 2022; 8:eabj3984. [PMID: 35030025 PMCID: PMC8759750 DOI: 10.1126/sciadv.abj3984] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2021] [Accepted: 11/22/2021] [Indexed: 06/07/2023]
Abstract
Biological redox reactions drive planetary biogeochemical cycles. Using a novel, structure-guided sequence analysis of proteins, we explored the patterns of evolution of enzymes responsible for these reactions. Our analysis reveals that the folds that bind transition metal–containing ligands have similar structural geometry and amino acid sequences across the full diversity of proteins. Similarity across folds reflects the availability of key transition metals over geological time and strongly suggests that transition metal–ligand binding had a small number of common peptide origins. We observe that structures central to our similarity network come primarily from oxidoreductases, suggesting that ancestral peptides may have also facilitated electron transfer reactions. Last, our results reveal that the earliest biologically functional peptides were likely available before the assembly of fully functional protein domains over 3.8 billion years ago.Thus, life is a special, very complex form of motion of matter, but this form did not always exist, and it is not separated from inorganic nature by an impassable abyss; rather, it arose from inorganic nature as a new property in the process of evolution of the world. We must study the history of this evolution if we want to solve the problem of the origin of life. [A. I. Oparin (1)]
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Affiliation(s)
- Yana Bromberg
- Department of Biochemistry and Microbiology, Rutgers University, 76 Lipman Dr, New Brunswick, NJ 08873, USA
| | - Ariel A. Aptekmann
- Department of Biochemistry and Microbiology, Rutgers University, 76 Lipman Dr, New Brunswick, NJ 08873, USA
| | - Yannick Mahlich
- Department of Biochemistry and Microbiology, Rutgers University, 76 Lipman Dr, New Brunswick, NJ 08873, USA
| | - Linda Cook
- Program in Applied and Computational Math, Princeton University, Princeton, NJ 08540, USA
| | - Stefan Senn
- Department of Biochemistry and Microbiology, Rutgers University, 76 Lipman Dr, New Brunswick, NJ 08873, USA
| | - Maximillian Miller
- Department of Biochemistry and Microbiology, Rutgers University, 76 Lipman Dr, New Brunswick, NJ 08873, USA
| | - Vikas Nanda
- Department of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, and Center for Advanced Biotechnology and Medicine, Rutgers University, Piscataway, NJ 08854, USA
| | - Diego U. Ferreiro
- Protein Physiology Lab, Departamento de Química Biológica, Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales (IQUIBICEN-CONICET), Universidad de Buenos Aires, Buenos Aires, Argentina
| | - Paul G. Falkowski
- Environmental Biophysics and Molecular Ecology Program, Department of Marine and Coastal Sciences, Rutgers University, New Brunswick, NJ 08901, USA
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33
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Davydov R, Herzog AE, Jodts RJ, Karlin KD, Hoffman BM. End-On Copper(I) Superoxo and Cu(II) Peroxo and Hydroperoxo Complexes Generated by Cryoreduction/Annealing and Characterized by EPR/ENDOR Spectroscopy. J Am Chem Soc 2022; 144:377-389. [PMID: 34981938 PMCID: PMC8785356 DOI: 10.1021/jacs.1c10252] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
In this report, we investigate the physical and chemical properties of monocopper Cu(I) superoxo and Cu(II) peroxo and hydroperoxo complexes. These are prepared by cryoreduction/annealing of the parent [LCuI(O2)]+ Cu(I) dioxygen adducts with the tripodal, N4-coordinating, tetradentate ligands L = PVtmpa, DMMtmpa, TMG3tren and are best described as [LCuII(O2•-)]+ Cu(II) complexes that possess end-on (η1-O2•-) superoxo coordination. Cryogenic γ-irradiation (77 K) of the EPR-silent parent complexes generates mobile electrons from the solvent that reduce the [LCuII(O2•-)]+ within the frozen matrix, trapping the reduced form fixed in the structure of the parent complex. Cryoannealing, namely progressively raising the temperature of a frozen sample in stages and then cooling back to low temperature at each stage for examination, tracks the reduced product as it relaxes its structure and undergoes chemical transformations. We employ EPR and ENDOR (electron-nuclear double resonance) as powerful spectroscopic tools for examining the properties of the states that form. Surprisingly, the primary products of reduction of the Cu(II) superoxo species are metastable cuprous superoxo [LCuI(O2•-)]+ complexes. During annealing to higher temperatures this state first undergoes internal electron transfer (IET) to form the end-on Cu(II) peroxo state, which is then protonated to form Cu(II)-OOH species. This is the first time these methods, which have been used to determine key details of metalloenzyme catalytic cycles and are a powerful tools for tracking PCET reactions, have been applied to copper coordination compounds.
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Affiliation(s)
- Roman Davydov
- Department of Chemistry, Northwestern University, Evanston, Illinois 60201, United States
| | - Austin E Herzog
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Richard J Jodts
- Department of Chemistry, Northwestern University, Evanston, Illinois 60201, United States
| | - Kenneth D Karlin
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Brian M Hoffman
- Department of Chemistry, Northwestern University, Evanston, Illinois 60201, United States
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34
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Chen CY, Tsai ML. Tris(Imidazolyl) Dicopper(I) Complex and its Reactivity to Exert Catalytic Oxidation of Sterically Hindered Phenol Substrates via a [Cu2O]2+ Core. Dalton Trans 2022; 51:2428-2443. [DOI: 10.1039/d1dt04084g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The Cu ion ligated with histidine residues is a common active site motif of various Cu-containing metalloenzymes exerting versatile catalytic oxidation reactions. Due to the scarce of structurally characterized biomimetic...
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35
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Sogahata K, Ozaki T, Igarashi Y, Naganuma Y, Liu C, Minami A, Oikawa H. Biosynthetic Studies of Phomopsins Unveil Posttranslational Installation of Dehydroamino Acids by UstYa Family Proteins. Angew Chem Int Ed Engl 2021; 60:25729-25734. [PMID: 34608734 DOI: 10.1002/anie.202111076] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2021] [Indexed: 12/29/2022]
Abstract
UstYa family proteins (DUF3328) are widely and specifically distributed in fungi. They are known to be involved in the biosynthesis of ribosomally synthesized and posttranslationally modified peptides (RiPPs) and nonribosomal peptides, and possibly catalyze various reactions, including oxidative cyclization and chlorination. In this study, we focused on phomopsin A, a fungal RiPP consisting of unique nonproteinogenic amino acids. Gene knockout experiments demonstrated that three UstYa homologues, phomYc, phomYd, and phomYe, are essential for the desaturation of amino acid moieties, showing unprecedented function among UstYa family proteins. Sequence similarity network analysis indicated that their amino acid sequences are highly diverged and that most remain uncharacterized, paving the way for genome mining of fungal metabolites with unique modifications.
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Affiliation(s)
- Kaho Sogahata
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
| | - Taro Ozaki
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
| | - Yuya Igarashi
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
| | - Yuka Naganuma
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
| | - Chengwei Liu
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
| | - Atsushi Minami
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
| | - Hideaki Oikawa
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
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36
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Duca G. Hydrogen Peroxide in Ecological and Environmental Chemistry. CHEMISTRY JOURNAL OF MOLDOVA 2021. [DOI: 10.19261/cjm.2021.918] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
This review paper is focused on the detailed consideration of the structure, properties and reactions of H2O2. The paper highlights the importance of revealing these processes’ mechanisms, since they have been insufficiently studied so far, or the related data have a fragmentary and incomplete character. A special attention is given to catalytic oxidation reactions, formation and properties of intermediates, their role in the natural environment.
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37
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Sogahata K, Ozaki T, Igarashi Y, Naganuma Y, Liu C, Minami A, Oikawa H. Biosynthetic Studies of Phomopsins Unveil Posttranslational Installation of Dehydroamino Acids by UstYa Family Proteins. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202111076] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Kaho Sogahata
- Department of Chemistry Faculty of Science Hokkaido University Sapporo 060-0810 Japan
| | - Taro Ozaki
- Department of Chemistry Faculty of Science Hokkaido University Sapporo 060-0810 Japan
| | - Yuya Igarashi
- Department of Chemistry Faculty of Science Hokkaido University Sapporo 060-0810 Japan
| | - Yuka Naganuma
- Department of Chemistry Faculty of Science Hokkaido University Sapporo 060-0810 Japan
| | - Chengwei Liu
- Department of Chemistry Faculty of Science Hokkaido University Sapporo 060-0810 Japan
| | - Atsushi Minami
- Department of Chemistry Faculty of Science Hokkaido University Sapporo 060-0810 Japan
| | - Hideaki Oikawa
- Department of Chemistry Faculty of Science Hokkaido University Sapporo 060-0810 Japan
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38
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Quek SY, Debnath S, Laxmi S, van Gastel M, Krämer T, England J. Sterically Stabilized End-On Superoxocopper(II) Complexes and Mechanistic Insights into Their Reactivity with O-H, N-H, and C-H Substrates. J Am Chem Soc 2021; 143:19731-19747. [PMID: 34783549 DOI: 10.1021/jacs.1c07837] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Instability of end-on superoxocopper(II) complexes, with respect to conversion to peroxo-bridged dicopper(II) complexes, has largely constrained their study to very low temperatures. This limits their kinetic capacity to oxidize substrates. In response, we have developed a series of bulky ligands, Ar3-TMPA (Ar = tpb, dpb, dtbpb), and used them to support copper(I) complexes that react with O2 to yield [CuII(η1-O2•-)(Ar3-TMPA)]+ species, which are stable against dimerization at all temperatures. Binding of O2 saturates at subambient temperatures and can be reversed by warming. The onset of oxygenation for the Ar = tpb and dpb systems is observed at 25 °C, and all three [CuII(η1-O2•-)(Ar3-TMPA)]+ complexes are stable against self-decay at temperatures of ≤-20 °C. This provides a wide temperature window for study of these complexes, which was exploited by performing extensive reaction kinetics measurements for [CuII(η1-O2•-)(tpb3-TMPA)]+ using a broad range of O-H, N-H, and C-H bond substrates. This includes correlation of second order rate constants (k2) versus oxidation potentials (Eox) for a range of phenols, construction of Eyring plots, and temperature-dependent kinetic isotope effect (KIE) measurements. The data obtained indicate that reaction with all substrates proceeds via H atom transfer (HAT), reaction with the phenols proceeds with significant charge transfer, and full tunneling of both H and D atoms occurs in the case of 1,2-diphenylhydrazine and 4-methoxy-2,6-di-tert-butylphenol. Oxidation of C-H bonds proved to be kinetically challenging, and whereas [CuII(η1-O2•-)(tpb3-TMPA)]+ can oxidize moderately strong O-H and N-H bonds, it is only able to oxidize very weak C-H bonds.
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Affiliation(s)
- Sebastian Y Quek
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, Singapore 637371, Singapore
| | - Suman Debnath
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, Singapore 637371, Singapore
| | - Shoba Laxmi
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, Singapore 637371, Singapore
| | - Maurice van Gastel
- Max-Planck-Institut für Kohlenforschung, Mülheim an der Ruhr D-45470, Germany
| | - Tobias Krämer
- Department of Chemistry, Maynooth University, Maynooth, Co. Kildare W23 F2H6, Ireland.,Hamilton Institute, Maynooth University, Maynooth, Co. Kildare W23 F2H6, Ireland
| | - Jason England
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, Singapore 637371, Singapore.,Department of Chemistry, University of Lincoln, Lincoln LN6 7TW, U.K
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39
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Battistella B, Warm K, Cula B, Lu B, Hildebrandt P, Kuhlmann U, Dau H, Mebs S, Ray K. The influence of secondary interactions on the [Ni(O 2)] + mediated aldehyde oxidation reactions. J Inorg Biochem 2021; 227:111668. [PMID: 34923388 DOI: 10.1016/j.jinorgbio.2021.111668] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2021] [Revised: 11/14/2021] [Accepted: 11/14/2021] [Indexed: 11/30/2022]
Abstract
A rate enhancement of one to two orders of magnitude can be obtained in the aldehyde deformylation reactions by replacing the -N(CH3) groups of [NiIII(O2)(Me4[12]aneN4)]+ (Me4[12]aneN4 = 1,4,7,10-tetramethyl-1,4,7,10-tetraazacyclododecane) and [NiIII(O2)(Me4[13]aneN4)]+ (Me4[13]aneN4 = 1,4,7,10-tetramethyl-1,4,7,10-tetraazacyclotridecane) complexes by -NH in [NiIII(O2)([12]aneN4)]+ (2; [12]aneN4 = 1,4,7,10-tetraazacyclododecane) and [NiIII(O2)([13]aneN4)]+ (4; [13]aneN4 = 1,4,7,10-tetraazacyclotridecane). Based on detailed spectroscopic, reaction-kinetics and theoretical investigations, the higher reactivities of 2 and 4 are attributed to the changes in the secondary-sphere interactions between the [NiIII(O2)]+ and [12]aneN4 or [13]aneN4 moieties, which open up an alternative electrophilic pathway for the aldehyde oxidation reaction. Identification of primary kinetic isotope effects on the reactivity and stability of 2 when the -NH groups of the [12]aneN4 ligand are deuterated may also suggest the presence of secondary interaction between the -NH groups of [12]aneN4 and [NiIII(O2)]+ moieties, although, such interactions are not obvious in the DFT calculated optimized structure at the employed level of theory.
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Affiliation(s)
- Beatrice Battistella
- Humboldt-Universität zu Berlin, Institut für Chemie, Brook-Taylor-Straße 2, 12489 Berlin, Germany
| | - Katrin Warm
- Humboldt-Universität zu Berlin, Institut für Chemie, Brook-Taylor-Straße 2, 12489 Berlin, Germany
| | - Beatrice Cula
- Humboldt-Universität zu Berlin, Institut für Chemie, Brook-Taylor-Straße 2, 12489 Berlin, Germany
| | - Bernd Lu
- Humboldt-Universität zu Berlin, Institut für Chemie, Brook-Taylor-Straße 2, 12489 Berlin, Germany
| | - Peter Hildebrandt
- Technische Universität Berlin, Institut für Chemie, Sekretariat PC 14, Straße des 17. Juni 135, 10623 Berlin, Germany
| | - Uwe Kuhlmann
- Technische Universität Berlin, Institut für Chemie, Sekretariat PC 14, Straße des 17. Juni 135, 10623 Berlin, Germany
| | - Holger Dau
- Freie Universität zu Berlin, Fachbereich Physik, Arnimallee 14, 14195 Berlin, Germany
| | - Stefan Mebs
- Freie Universität zu Berlin, Fachbereich Physik, Arnimallee 14, 14195 Berlin, Germany
| | - Kallol Ray
- Humboldt-Universität zu Berlin, Institut für Chemie, Brook-Taylor-Straße 2, 12489 Berlin, Germany.
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40
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Mechanistic Insight into the O–O Bond Activation by Manganese Corrole Complexes. Top Catal 2021. [DOI: 10.1007/s11244-021-01525-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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41
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Idhayadhulla A, Manilal A, Ahamed A, Alarifi S, Raman G. Potato Peels Mediated Synthesis of Cu(II)-nanoparticles from Tyrosinase Reacted with bis-( N-aminoethylethanolamine) (Tyr-Cu(II)-AEEA NPs) and Their Cytotoxicity against Michigan Cancer Foundation-7 Breast Cancer Cell Line. Molecules 2021; 26:molecules26216665. [PMID: 34771072 PMCID: PMC8588175 DOI: 10.3390/molecules26216665] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Revised: 10/15/2021] [Accepted: 10/28/2021] [Indexed: 11/16/2022] Open
Abstract
The synthesis of nanoparticles is most important in the context of cancer therapy, particularly copper nanoparticles, which are widely used. In this work, copper(II)-tyrosinase was isolated from potato peel powder. Copper nanoparticles (Tyr-Cu(II)-AEEA NPs) were synthesized via the reaction of tyrosinase with N-aminoethylethanolamine to produce Cu(II)-NPs and these were characterized by means of FT-IR, UV-Spectroscopy, XRD, SEM, TEM and a particle size analyzer. These Tyr-Cu(II)-AEEA NPs were tested as anticancer agents against MCF-7 breast cancer cells. Fluorescence microscopy and DNA fragmentation were also performed, which revealed the inhibiting potentials of Cu(II)-AEEA NPs and consequent cell death; Tyr-Cu(II)-AEEA NPs show potential cytotoxicity activity and this nano material could be contemplated as an anticancer medicament in future investigations.
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Affiliation(s)
- Akbar Idhayadhulla
- Research Department of Chemistry, Nehru Memorial College, Affiliated Bharathidasan University, Puthanamapatti 621007, Tamil Nadu, India
- Correspondence:
| | - Aseer Manilal
- Department of Medical Laboratory Science, College of Medicine and Health Sciences, Arba Minch University, Arba Minch P.O. Box No. 21, Ethiopia;
| | - Anis Ahamed
- Department of Botany & Microbiology, College of Sciences, King Saud University (KSU), P.O. Box 2455, Riyadh 11451, Saudi Arabia;
| | - Saud Alarifi
- Department of Zoology, College of Sciences, King Saud University (KSU), P.O. Box 2455, Riyadh 11451, Saudi Arabia;
| | - Gurusamy Raman
- Department of Life Science, Yeungnam University, Gyeongsan 38541, Gyeongbuk-do, Korea;
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42
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Jesse KA, Anferov SW, Collins KA, Valdez-Moreira JA, Czaikowski ME, Filatov AS, Anderson JS. Direct Aerobic Generation of a Ferric Hydroperoxo Intermediate Via a Preorganized Secondary Coordination Sphere. J Am Chem Soc 2021; 143:18121-18130. [PMID: 34698493 PMCID: PMC8569801 DOI: 10.1021/jacs.1c06911] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2021] [Indexed: 01/19/2023]
Abstract
Enzymes exert control over the reactivity of metal centers with precise tuning of the secondary coordination sphere of active sites. One particularly elegant illustration of this principle is in the controlled delivery of proton and electron equivalents in order to activate abundant but kinetically inert oxidants such as O2 for oxidative chemistry. Chemists have drawn inspiration from biology in designing molecular systems where the secondary coordination sphere can shuttle protons or electrons to substrates. However, a biomimetic activation of O2 requires the transfer of both protons and electrons, and molecular systems where ancillary ligands are designed to provide both of these equivalents are comparatively rare. Here, we report the use of a dihydrazonopyrrole (DHP) ligand complexed to Fe to perform exactly such a biomimetic activation of O2. In the presence of O2, this complex directly generates a high spin Fe(III)-hydroperoxo intermediate which features a DHP• ligand radical via ligand-based transfer of an H atom. This system displays oxidative reactivity and ultimately releases hydrogen peroxide, providing insight on how secondary coordination sphere interactions influence the evolution of oxidizing intermediates in Fe-mediated aerobic oxidations.
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Affiliation(s)
- Kate A. Jesse
- Department
of Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - Sophie W. Anferov
- Department
of Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - Kelsey A. Collins
- Department
of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | | | - Maia E. Czaikowski
- Department
of Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - Alexander S. Filatov
- Department
of Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - John S. Anderson
- Department
of Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
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43
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Xiang Y, Wang X, Song W, Du J, Yin X. Integrative Omics Analyses Reveal the Effects of Copper Ions on Salvianolic Acid Biosynthesis. FRONTIERS IN PLANT SCIENCE 2021; 12:746117. [PMID: 34745177 PMCID: PMC8567050 DOI: 10.3389/fpls.2021.746117] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/23/2021] [Accepted: 09/21/2021] [Indexed: 06/13/2023]
Abstract
Salvianolic acids, a group of secondary metabolites produced by Salvia miltiorrhiza, are widely used for treating cerebrovascular diseases. Copper is recognized as a necessary microelement and plays an essential role in plant growth. At present, the effect of copper on the biosynthesis of SalAs is unknown. Here, an integrated metabolomic and transcriptomic approach, coupled with biochemical analyses, was employed to dissect the mechanisms by which copper ions induced the biosynthesis of SalAs. In this study, we identified that a low concentration (5 μM) of copper ions could promote growth of S. miltiorrhiza and the biosynthesis of SalAs. Results of the metabolomics analysis showed that 160 metabolites (90 increased and 70 decreased) were significantly changed in S. miltiorrhiza treated with low concentration of copper ions. The differential metabolites were mainly involved in amino acid metabolism, the pentose phosphate pathway, and carbon fixation in photosynthetic organisms. The contents of chlorophyll a, chlorophyll b, and total chlorophyll were significantly increased in leaves of low concentration of copper-treated S. miltiorrhiza plants. Importantly, core SalA biosynthetic genes (laccases and rosmarinic acid synthase), SalA biosynthesis-related transcription factors (MYBs and zinc finger CCCH domain-containing protein 33), and chloroplast proteins-encoding genes (blue copper protein and chlorophyll-binding protein) were upregulated in the treated samples as indicated by a comprehensive transcriptomic analysis. Bioinformatics and enzyme activity analyses showed that laccase 20 contained copper-binding motifs, and its activity in low concentration of copper ions-treated S. miltiorrhiza was much higher than that in the control. Our results demonstrate that enhancement of copper ions of the accumulation of SalAs might be through regulating laccase 20, MYBs, and zinc finger transcription factors, and photosynthetic genes.
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Affiliation(s)
- Yaping Xiang
- State Key Laboratory of Natural Medicines, Department of Pharmacognosy, Institute of Pharmaceutical Science, China Pharmaceutical University, Nanjing, China
| | - Xiaoxiao Wang
- State Key Laboratory of Natural Medicines, Department of Pharmacognosy, Institute of Pharmaceutical Science, China Pharmaceutical University, Nanjing, China
| | - Wei Song
- State Key Laboratory of Natural Medicines, Department of Pharmacognosy, Institute of Pharmaceutical Science, China Pharmaceutical University, Nanjing, China
| | - Jinfa Du
- School of Traditional Chinese Pharmacy, China Pharmaceutical University, Nanjing, China
| | - Xiaojian Yin
- State Key Laboratory of Natural Medicines, Department of Pharmacognosy, Institute of Pharmaceutical Science, China Pharmaceutical University, Nanjing, China
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44
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Chidambaram S, Ali D, Alarifi S, Gurusamy R, Radhakrishnan S, Akbar I. Tyrosinase-mediated synthesis of larvicidal active 1,5-diphenyl pent-4-en-1-one derivatives against Culex quinquefasciatus and investigation of their ichthyotoxicity. Sci Rep 2021; 11:20730. [PMID: 34671085 PMCID: PMC8528871 DOI: 10.1038/s41598-021-98281-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2021] [Accepted: 08/30/2021] [Indexed: 12/02/2022] Open
Abstract
1,5-diphenylpent-4-en-1-one derivatives were synthesised using the grindstone method with Cu(II)-tyrosinase used as a catalyst. This method showed a high yield under mild reaction conditions. The synthesised compounds were identified by FTIR, 1H NMR, 13C NMR, mass spectrometry, and elemental analysis. In this study, a total of 17 compounds (1a-1q) were synthesised, and their larvicidal and antifeedant activities were evaluated. Compound 1i (1-(5-oxo-1,5-diphenylpent-1-en-3-yl)-3-(3-phenylallylidene)thiourea) was notably more active (LD50: 28.5 µM) against Culex quinquefasciatus than permethrin(54.6 µM) and temephos(37.9 µM), whereas compound 1i at 100 µM caused 0% mortality in Oreochromis mossambicus within 24 h in an antifeedant screening, with ichthyotoxicity determined as the death ratio (%) at 24 h. Compounds 1a, 1e, 1f, 1j, and 1k were found to be highly toxic, whereas 1i was not toxic in antifeedant screening. Compound 1i was found to possess a high larvicidal activity against C. quinquefasciatus and was non-toxic to non-target aquatic species. Molecular docking studies also supported the finding that 1i is a potent larvicide with higher binding energy than the control (- 10.0 vs. - 7.6 kcal/mol) in the 3OGN protein. Lead molecules are important for their larvicidal properties and application as insecticides.
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Affiliation(s)
- SathishKumar Chidambaram
- Research Department of Chemistry, Nehru Memorial College (Affiliated to Bharathidasan University), Puthanampatti, Tiruchchirappalli District, Tamil Nadu, 621007, India
| | - Daoud Ali
- Department of Zoology, College of Sciences, King Saud University (KSU), P.O. Box 2455, Riyadh, 11451, Saudi Arabia
| | - Saud Alarifi
- Department of Zoology, College of Sciences, King Saud University (KSU), P.O. Box 2455, Riyadh, 11451, Saudi Arabia
| | - Raman Gurusamy
- Department of Life Sciences, Yeungnam University, Gyeongsan, 38541, Gyeongsan-buk, South Korea
| | - SurendraKumar Radhakrishnan
- Research Department of Chemistry, Nehru Memorial College (Affiliated to Bharathidasan University), Puthanampatti, Tiruchchirappalli District, Tamil Nadu, 621007, India
| | - Idhayadhulla Akbar
- Research Department of Chemistry, Nehru Memorial College (Affiliated to Bharathidasan University), Puthanampatti, Tiruchchirappalli District, Tamil Nadu, 621007, India.
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45
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Warm K, Tripodi G, Andris E, Mebs S, Kuhlmann U, Dau H, Hildebrandt P, Roithová J, Ray K. Spektroskopische Charakterisierung eines reaktiven [Cu
2
(μ‐OH)
2
]
2+
Intermediates in Cu/TEMPO‐katalysierten aeroben Alkoholoxidationen. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202108442] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Katrin Warm
- Institut für Chemie Humboldt-Universität zu Berlin Brook-Taylor-Straße 2 12489 Berlin Deutschland
| | | | - Erik Andris
- Radboud University Heyendaalseweg 135 6525 AJ Nijmegen Niederlande
- Institute of Organic Chemistry and Biochemistry Czech Academy of Sciences Flemingovo náměstí 2 16610 Prague Czech Republic
| | - Stefan Mebs
- Institut für Physik Freie Universität Berlin Arnimallee 14 14195 Berlin Deutschland
| | - Uwe Kuhlmann
- Institut für Chemie, Fakultät II Technische Universität Berlin Straße des 17. Juni 135 10623 Berlin Deutschland
| | - Holger Dau
- Institut für Physik Freie Universität Berlin Arnimallee 14 14195 Berlin Deutschland
| | - Peter Hildebrandt
- Institut für Chemie, Fakultät II Technische Universität Berlin Straße des 17. Juni 135 10623 Berlin Deutschland
| | - Jana Roithová
- Radboud University Heyendaalseweg 135 6525 AJ Nijmegen Niederlande
| | - Kallol Ray
- Institut für Chemie Humboldt-Universität zu Berlin Brook-Taylor-Straße 2 12489 Berlin Deutschland
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46
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Warm K, Tripodi G, Andris E, Mebs S, Kuhlmann U, Dau H, Hildebrandt P, Roithová J, Ray K. Spectroscopic Characterization of a Reactive [Cu 2 (μ-OH) 2 ] 2+ Intermediate in Cu/TEMPO Catalyzed Aerobic Alcohol Oxidation Reaction. Angew Chem Int Ed Engl 2021; 60:23018-23024. [PMID: 34309168 PMCID: PMC8518518 DOI: 10.1002/anie.202108442] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Revised: 07/16/2021] [Indexed: 12/23/2022]
Abstract
CuI/TEMPO (TEMPO=2,2,6,6‐tetramethylpiperidinyloxyl) catalyst systems are versatile catalysts for aerobic alcohol oxidation reactions to selectively yield aldehydes. However, several aspects of the mechanism are yet unresolved, mainly because of the lack of identification of any reactive intermediates. Herein, we report the synthesis and characterization of a dinuclear [L12Cu2]2+ complex 1, which in presence of TEMPO can couple the catalytic 4 H+/4 e− reduction of O2 to water to the oxidation of benzylic and aliphatic alcohols. The mechanisms of the O2‐reduction and alcohol oxidation reactions have been clarified by the spectroscopic detection of the reactive intermediates in the gas and condensed phases, as well as by kinetic studies on each step in the catalytic cycles. Bis(μ‐oxo)dicopper(III) (2) and bis(μ‐hydroxo)dicopper(II) species 3 are shown as viable reactants in oxidation catalysis. The present study provides deep mechanistic insight into the aerobic oxidation of alcohols that should serve as a valuable foundation for ongoing efforts dedicated towards the understanding of transition‐metal catalysts involving redox‐active organic cocatalysts.
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Affiliation(s)
- Katrin Warm
- Institut für Chemie, Humboldt-Universität zu Berlin, Brook-Taylor-Straße 2, 12489, Berlin, Germany
| | - Guilherme Tripodi
- Radboud University, Heyendaalseweg 135, 6525, AJ, Nijmegen, Netherlands
| | - Erik Andris
- Radboud University, Heyendaalseweg 135, 6525, AJ, Nijmegen, Netherlands.,Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo náměstí 2, 16610, Prague, Czech Republic
| | - Stefan Mebs
- Institut für Physik, Freie Universität Berlin, Arnimallee 14, 14195, Berlin, Germany
| | - Uwe Kuhlmann
- Institut für Chemie, Fakultät II, Technische Universität Berlin, Straße des 17. Juni 135, 10623, Berlin, Germany
| | - Holger Dau
- Institut für Physik, Freie Universität Berlin, Arnimallee 14, 14195, Berlin, Germany
| | - Peter Hildebrandt
- Institut für Chemie, Fakultät II, Technische Universität Berlin, Straße des 17. Juni 135, 10623, Berlin, Germany
| | - Jana Roithová
- Radboud University, Heyendaalseweg 135, 6525, AJ, Nijmegen, Netherlands
| | - Kallol Ray
- Institut für Chemie, Humboldt-Universität zu Berlin, Brook-Taylor-Straße 2, 12489, Berlin, Germany
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47
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Chen QC, Fridman N, Tumanskii B, Gross Z. A chromophore-supported structural and functional model of dinuclear copper enzymes, for facilitating mechanism of action studies. Chem Sci 2021; 12:12445-12450. [PMID: 34603675 PMCID: PMC8480325 DOI: 10.1039/d1sc02593g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2021] [Accepted: 08/09/2021] [Indexed: 11/25/2022] Open
Abstract
Type III dicopper centres are the heart of the reactive sites of enzymes that catalyze the oxidation of catechols. Numerous synthetic model complexes have been prepared to uncover the fundamental chemistry involved in these processes, but progress is still lagging much behind that for heme enzymes. One reason is that the latter gain very much from the informative spectroscopic features of their porphyrin-based metal-chelating ligand. We now introduce sapphyrin-chelated dicopper complexes and show that they may be isolated in different oxidation states and coordination geometries, with distinctive colors and electronic spectra due to the heme-like ligands. The dicopper(i) complex 1-Cu2 was characterized by 1H and 19F NMR spectroscopy of the metal-chelating sapphyrin, the oxygenated dicopper(ii) complex 1-Cu2O2 by EPR, and crystallographic data was obtained for the tetracopper(ii)-bis-sapphyrin complex [1-Cu2O2]2. This uncovered a non-heme [Cu4(OH)4]4− cluster, held together with the aid of two sapphyrin ligands, with structural features reminiscent of those of catechol oxidase. Biomimetic activity was demonstrated by the 1-Cu2O2 catalyzed aerobic oxidation of catechol to quinone; the sapphyrin ligand aided very much in gaining information about reactive intermediates and the rate-limiting step of the reaction. Di-copper chelation by sapphyrin facilitates reaction mechanism investigations and characterization of reactive intermediates regarding biomimetic catechol oxidation.![]()
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Affiliation(s)
- Qiu-Cheng Chen
- Schulich Faculty of Chemistry, Technion-Israel Institute of Technology Haifa 32000 Israel
| | - Natalia Fridman
- Schulich Faculty of Chemistry, Technion-Israel Institute of Technology Haifa 32000 Israel
| | - Boris Tumanskii
- Schulich Faculty of Chemistry, Technion-Israel Institute of Technology Haifa 32000 Israel
| | - Zeev Gross
- Schulich Faculty of Chemistry, Technion-Israel Institute of Technology Haifa 32000 Israel
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48
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Jodts RJ, Ross MO, Koo CW, Doan PE, Rosenzweig AC, Hoffman BM. Coordination of the Copper Centers in Particulate Methane Monooxygenase: Comparison between Methanotrophs and Characterization of the Cu C Site by EPR and ENDOR Spectroscopies. J Am Chem Soc 2021; 143:15358-15368. [PMID: 34498465 DOI: 10.1021/jacs.1c07018] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
In nature, methane is oxidized to methanol by two enzymes, the iron-dependent soluble methane monooxygenase (sMMO) and the copper-dependent particulate MMO (pMMO). While sMMO's diiron metal active site is spectroscopically and structurally well-characterized, pMMO's copper sites are not. Recent EPR and ENDOR studies have established the presence of two monocopper sites, but the coordination environment of only one has been determined, that within the PmoB subunit and denoted CuB. Moreover, this recent work only focused on a type I methanotrophic pMMO, while previous observations of the type II enzyme were interpreted in terms of the presence of a dicopper site. First, this report shows that the type II Methylocystis species strain Rockwell pMMO, like the type I pMMOs, contains two monocopper sites and that its CuB site has a coordination environment identical to that of type I enzymes. As such, for the full range of pMMOs this report completes the refutation of prior and ongoing suggestions of multicopper sites. Second, and of primary importance, EPR/ENDOR measurements (a) for the first time establish the coordination environment of the spectroscopically observed site, provisionally denoted CuC, in both types of pMMO, thereby (b) establishing the assignment of this site observed by EPR to the crystallographically observed metal-binding site in the PmoC subunit. Finally, these results further indicate that CuC is the likely site of biological methane oxidation by pMMO, a conclusion that will serve as a foundation for proposals regarding the mechanism of this reaction.
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Affiliation(s)
- Richard J Jodts
- Departments of Chemistry and Molecular Biosciences, Northwestern University, Evanston, Illinois 60208, United States
| | - Matthew O Ross
- Departments of Chemistry and Molecular Biosciences, Northwestern University, Evanston, Illinois 60208, United States
| | - Christopher W Koo
- Departments of Chemistry and Molecular Biosciences, Northwestern University, Evanston, Illinois 60208, United States
| | - Peter E Doan
- Departments of Chemistry and Molecular Biosciences, Northwestern University, Evanston, Illinois 60208, United States
| | - Amy C Rosenzweig
- Departments of Chemistry and Molecular Biosciences, Northwestern University, Evanston, Illinois 60208, United States
| | - Brian M Hoffman
- Departments of Chemistry and Molecular Biosciences, Northwestern University, Evanston, Illinois 60208, United States
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49
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Zhong X, Bouchey CJ, Kabir E, Tolman WB. Using a monocopper-superoxo complex to prepare multicopper-peroxo species relevant to proposed enzyme intermediates. J Inorg Biochem 2021; 222:111498. [PMID: 34120095 PMCID: PMC9835715 DOI: 10.1016/j.jinorgbio.2021.111498] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2021] [Revised: 05/29/2021] [Accepted: 05/29/2021] [Indexed: 01/16/2023]
Abstract
With the goal of generating a (peroxo)tricopper species analogous to the Peroxy Intermediate proposed for multicopper oxidases, solutions of the copper-superoxide complex [K(Krypt)][LCuO2] (L = N,N'-bis(2,6-diisopropylphenyl)-2,6-pyridinedicarboxamide, Krypt = 4,7,13,16,21,24-hexaoxa-1,10-diazabicyclo[8.8.8]hexacosane) were reacted with the dicopper(I) complex [(TPBN)Cu2(MeCN)2][PF6]2 at -70 °C (TPBN = N,N,N',N'-tetrakis-(2-pyridylmethyl)-1,4-diaminobutane). A metastable intermediate formed, which on the basis of UV-vis, EPR, and resonance Raman spectroscopy was proposed to derive from reaction of two equivalents of the copper-superoxide with one equivalent of the dicopper(I) complex to yield a complex with two (peroxo)dicopper moieties rather than the desired (peroxo)tricopper PI model. A similar intermediate formed upon reaction of [K(Krypt)][LCuO2] with [(BPMA)Cu(MeCN)][PF6] (BPMA = N,N-bis(2-pyridylmethyl)-methyl-amine), which contained the same donor set as provided by TPBN. Comparison of resonance Raman data and consideration of structural preferences for LCuX species led to hypothesis of a μ-η1:η2-peroxo structure for both intermediates.
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Affiliation(s)
- Xinzhe Zhong
- Department of Chemistry, Washington University in St. Louis, One Brookings Hall, Campus Box 1134, St. Louis, MO 63130-4899, United States of America
| | - Caitlin J. Bouchey
- Department of Chemistry, Washington University in St. Louis, One Brookings Hall, Campus Box 1134, St. Louis, MO 63130-4899, United States of America,Department of Chemistry, University of Minnesota, 207 Pleasant St. SE, Minneapolis, MN 55455, United States of America
| | - Evanta Kabir
- Department of Chemistry, Washington University in St. Louis, One Brookings Hall, Campus Box 1134, St. Louis, MO 63130-4899, United States of America
| | - William B. Tolman
- Department of Chemistry, Washington University in St. Louis, One Brookings Hall, Campus Box 1134, St. Louis, MO 63130-4899, United States of America,Corresponding author. (W.B. Tolman)
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50
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Paul M, Teubner M, Grimm-Lebsanft B, Buchenau S, Hoffmann A, Rübhausen M, Herres-Pawlis S. Influence of the amine donor on hybrid guanidine-stabilized Bis(μ-oxido) dicopper(III) complexes and their tyrosinase-like oxygenation activity towards polycyclic aromatic alcohols. J Inorg Biochem 2021; 224:111541. [PMID: 34416481 DOI: 10.1016/j.jinorgbio.2021.111541] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2021] [Revised: 06/30/2021] [Accepted: 07/11/2021] [Indexed: 10/20/2022]
Abstract
The tyrosinase-like activity of hybrid guanidine-stabilized bis(μ-oxido) dicopper(III) complexes [Cu2(μ-O)2(L)2](X)2 (L = 2-{2-((Diethylamino)methyl)phenyl}-1,1,3,3-tetramethylguanidine (TMGbenzNEt2, L2) and 2-{2-((Di-isopropylamino)methyl)phenyl}-1,1,3,3-tetramethylguanidine (TMGbenzNiPr2, L3); X = PF6-, BF4-, CF3SO3-) is described. New aromatic hybrid guanidine amine ligands were developed with varying amine donor function. Their copper(I) complexes were analyzed towards their ability to activate dioxygen in the presence of different weakly coordinating anions. The resulting bis(μ-oxido) species were characterized at low temperatures by UV/Vis and resonance Raman spectroscopy, cryo-ESI mass spectrometry and density functional theory calculations. Small structural changes in the ligand sphere were found to influence the characteristic ligand-to-metal charge transfer (LMCT) features of the bis(μ-oxido) species, correlating a redshift in the UV/Vis spectrum with weaker N-donor function of the ligand. DFT calculations elucidated the influence of the steric and electronic properties of the bis(μ-oxido) species leading to a higher twist of the Cu2O2 plane against the CuN2 plane and a stretching of the Cu2O2 core. Despite their moderate stability at -100 °C, the bis(μ-oxido) complexes exhibited a remarkable activity in catalytic oxygenation reactions of polycyclic aromatic alcohols. Further the selectivity of the catalyst in the hydroxylation reactions of challenging phenolic substrates is not changed despite an increasing shield of the reactive bis(μ-oxido) core. The generated quinones were found to form exclusively bent phenazines, providing a promising strategy to access tailored phenazine derivatives.
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Affiliation(s)
- Melanie Paul
- Institute of Inorganic Chemistry, RWTH Aachen University, Landoltweg 1a, 52074 Aachen, Germany
| | - Melissa Teubner
- Institute of Inorganic Chemistry, RWTH Aachen University, Landoltweg 1a, 52074 Aachen, Germany; Department of Physics, Universität Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany
| | | | - Sören Buchenau
- Department of Physics, Universität Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Alexander Hoffmann
- Institute of Inorganic Chemistry, RWTH Aachen University, Landoltweg 1a, 52074 Aachen, Germany.
| | - Michael Rübhausen
- Department of Physics, Universität Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Sonja Herres-Pawlis
- Institute of Inorganic Chemistry, RWTH Aachen University, Landoltweg 1a, 52074 Aachen, Germany.
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