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Hao P, Jiang X, Rao X, Liang W, Zhang Y. Population Monitoring of the Red Junglefowl Based on Acoustic Signal Recognition Technology. Ecol Evol 2025; 15:e71280. [PMID: 40242796 PMCID: PMC12000762 DOI: 10.1002/ece3.71280] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2025] [Revised: 03/24/2025] [Accepted: 03/31/2025] [Indexed: 04/18/2025] Open
Abstract
Vocalisation is a crucial means of communication for birds and plays a key role in survival and reproductive success. Individual differences in songs have been used for identification in many animals, but few studies have integrated song individuality into wildlife population monitoring. The male red junglefowl Gallus gallus jabouillei is a tropical forest bird that primarily uses acoustic signals for conspecific communication. From July to August 2020, the calls of 34 pasture-raised red junglefowl were recorded for individual identification based on vocalisations. Fieldwork was conducted from March to May 2021 in the Datian National Nature Reserve, Hainan, China, during which microphone arrays were deployed to record the calls of wild red junglefowl throughout their breeding season. Discriminant function analysis (DFA) was applied to identify pasture-raised red junglefowl individuals, achieving a correct identification rate of 95.7%. Affinity propagation (AP) clustering was used to perform unsupervised clustering based on pairwise syllable similarities, resulting in 34 clusters corresponding to the actual number of individuals, with a correct syllable type recognition rate of 99.4%. Kaleidoscope software was used to extract the call during the breeding period of the wild population of red junglefowl; the precision rate was 80.38%, and the recall rate was 75.85%. Using AP clustering for vocalisation analysis, the estimated population in the core area was approximately 205 male individuals, with a manual verification accuracy of 82.5%. This result is slightly lower than the estimate of 234 individuals obtained using vocal count and random encounter methods. Our study demonstrated the potential of affinity propagation clustering techniques for estimating the population size of wild red junglefowl.
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Affiliation(s)
- Peipei Hao
- Ministry of Education Key Laboratory for Biodiversity and Ecological Engineering, College of Life SciencesBeijing Normal UniversityBeijingChina
| | - Xingyi Jiang
- Ministry of Education Key Laboratory for Biodiversity and Ecological Engineering, College of Life SciencesBeijing Normal UniversityBeijingChina
| | - Xiaodong Rao
- School of Tropical Agriculture and Forestry5 Hainan UniversityDanzhouChina
- Haikou Key Laboratory of Intelligent ForestryHaikouChina
| | - Wei Liang
- Ministry of Education Key Laboratory for Ecology of Tropical Islands, Key Laboratory of Tropical Animal and Plant Ecology of Hainan ProvinceCollege of Life Sciences, Hainan Normal UniversityHaikouChina
| | - Yanyun Zhang
- Ministry of Education Key Laboratory for Biodiversity and Ecological Engineering, College of Life SciencesBeijing Normal UniversityBeijingChina
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2
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Maya Lastra N, Dias PAD, Chavira Ramírez DR, Rangel Negrín A. "Dear Enemies", "Nasty Neighbors", and the Strength in Numbers: Exploring the Behavioral and Hormonal Responses of Mantled Howler Monkey Males to Simulated Intruder Loud Calls. Am J Primatol 2025; 87:e70032. [PMID: 40162718 DOI: 10.1002/ajp.70032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2024] [Revised: 02/18/2025] [Accepted: 03/09/2025] [Indexed: 04/02/2025]
Abstract
Loud calls are critical for primate intergroup communication, influencing resource defense, territorial boundaries, and conflict management. This study examined the interplay of familiarity and numeric odds in shaping the behavioral and hormonal responses of male mantled howler monkeys (Alouatta palliata) to simulated intruder calls. Using playback experiments, we tested whether responses were consistent with "dear enemy" dynamics, which predict stronger responses to unfamiliar intruders, or "nasty neighbor" dynamics, which predict stronger responses to familiar intruders. Additionally, we assessed the influence of numeric odds, hypothesizing stronger responses under favorable conditions. Behavioral responses, including vocalization and approach latencies, were primarily influenced by numeric odds, with shorter latencies observed under favorable odds. Vocal duration, however, was longer when intruders were familiar, consistent with "nasty neighbor" dynamics. Hormonal responses, measured via fecal glucocorticoid and testosterone metabolites, increased in response to unfamiliar intruders, supporting "dear enemy" predictions. Interaction effects showed that familiarity modulated approach duration and latency when numeric odds were unfavorable. These findings reveal the distinct roles of numeric odds and familiarity in shaping immediate and prolonged responses to intruders. Numeric odds influenced engagement decisions, while familiarity was related to stress-related hormonal changes and vocal communication strategies. This study contributes to the understanding of intergroup dynamics by clarifying the role of competitive asymmetries and social relationships in conflict management. Future work incorporating multimodal cues and ecological variability will further elucidate the adaptive significance of these responses.
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Affiliation(s)
- Natalia Maya Lastra
- Primate Behavioral Ecology Lab, Instituto de Neuro-etología, Universidad Veracruzana, Xalapa, Veracruz, México
| | - Pedro A D Dias
- Primate Behavioral Ecology Lab, Instituto de Neuro-etología, Universidad Veracruzana, Xalapa, Veracruz, México
| | - David Roberto Chavira Ramírez
- Departamento de Biología de la Reproducción, Instituto Nacional de Ciencias Médicas y Nutrición Salvador Zubirán, Ciudad de México, México
| | - Ariadna Rangel Negrín
- Primate Behavioral Ecology Lab, Instituto de Neuro-etología, Universidad Veracruzana, Xalapa, Veracruz, México
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3
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Cauzinille J, Favre B, Marxer R, Rey A. Applying machine learning to primate bioacoustics: Review and perspectives. Am J Primatol 2024; 86:e23666. [PMID: 39120066 DOI: 10.1002/ajp.23666] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Revised: 06/13/2024] [Accepted: 07/12/2024] [Indexed: 08/10/2024]
Abstract
This paper provides a comprehensive review of the use of computational bioacoustics as well as signal and speech processing techniques in the analysis of primate vocal communication. We explore the potential implications of machine learning and deep learning methods, from the use of simple supervised algorithms to more recent self-supervised models, for processing and analyzing large data sets obtained within the emergence of passive acoustic monitoring approaches. In addition, we discuss the importance of automated primate vocalization analysis in tackling essential questions on animal communication and highlighting the role of comparative linguistics in bioacoustic research. We also examine the challenges associated with data collection and annotation and provide insights into potential solutions. Overall, this review paper runs through a set of common or innovative perspectives and applications of machine learning for primate vocal communication analysis and outlines opportunities for future research in this rapidly developing field.
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Affiliation(s)
- Jules Cauzinille
- LIS, CNRS, Aix-Marseille University, Marseille, France
- CRPN, CNRS, Aix-Marseille University, Marseille, France
- ILCB, Aix-Marseille University, Marseille, France
| | - Benoit Favre
- LIS, CNRS, Aix-Marseille University, Marseille, France
- ILCB, Aix-Marseille University, Marseille, France
| | - Ricard Marxer
- ILCB, Aix-Marseille University, Marseille, France
- LIS, CNRS, Université de Toulon, Toulon, France
| | - Arnaud Rey
- CRPN, CNRS, Aix-Marseille University, Marseille, France
- ILCB, Aix-Marseille University, Marseille, France
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4
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Cheyne SM, Thompson C, Martin A, K Aulia AA, Birot H, Cahyaningrum E, Aragay J, Hutasoit PA, Sugardjito J. The power of gibbon songs: Going beyond the research to inform conservation actions. Am J Primatol 2024; 86:e23626. [PMID: 38566320 DOI: 10.1002/ajp.23626] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Revised: 03/12/2024] [Accepted: 03/17/2024] [Indexed: 04/04/2024]
Abstract
Gibbons (Hylobatidae) are the smallest of the apes, known for their arboreal behavior and stereotyped songs. These species and sex-specific songs are often the subject of detailed studies regarding their evolution, responses to changing environments, involvement in social behavior, and used to design vocalization-based survey techniques to monitor population densities and trends. What is poorly understood is the value and impact of using the science and sound of gibbon vocalization and gibbon stories in education and outreach to complement nongovernmental organizations (NGOs) efforts. We present an example of how Borneo Nature Foundation, a NGOs based in Indonesia, is working to use the recordings of the songs of Bornean white-bearded gibbons (Hylobates albibarbis) to inform conservation actions and education efforts. Gibbons in Indonesia are often poorly known or understood by the public compared to orangutans (Pongo spp). We showcase how a field of study, namely primate acoustics, is an untapped resource to create digital content to engage with local, national and international communities and can be developed into educational tools in the form of storytelling, mobile apps and games, to highlight the plight of these threatened species and how to conserve them.
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Affiliation(s)
- Susan M Cheyne
- Borneo Nature Foundation International, Penryn, UK
- Oxford Brookes University, Oxford, UK
| | - Carolyn Thompson
- Borneo Nature Foundation International, Penryn, UK
- University College London, London, UK
- Institute of Zoology, Zoological Society of London, London, UK
| | | | | | - Helene Birot
- Borneo Nature Foundation International, Penryn, UK
| | | | - Joana Aragay
- Borneo Nature Foundation International, Penryn, UK
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5
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Wearn OR, Trinh-Dinh H, Ma CY, Khac Le Q, Nguyen P, Van Hoang T, Van Luong C, Van Hua T, Van Hoang Q, Fan PF, Duc Nguyen T. Vocal fingerprinting reveals a substantially smaller global population of the Critically Endangered cao vit gibbon (Nomascus nasutus) than previously thought. Sci Rep 2024; 14:416. [PMID: 38172177 PMCID: PMC10764777 DOI: 10.1038/s41598-023-50838-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2023] [Accepted: 12/26/2023] [Indexed: 01/05/2024] Open
Abstract
The cao vit gibbon (Nomascus nasutus) is one of the rarest primates on Earth and now only survives in a single forest patch of less than 5000 ha on the Vietnam-China border. Accurate monitoring of the last remaining population is critical to inform ongoing conservation interventions and track conservation success over time. However, traditional methods for monitoring gibbons, involving triangulation of groups from their songs, are inherently subjective and likely subject to considerable measurement errors. To overcome this, we aimed to use 'vocal fingerprinting' to distinguish the different singing males in the population. During the 2021 population survey, we complemented the traditional observations made by survey teams with a concurrent passive acoustic monitoring array. Counts of gibbon group sizes were also assisted with a UAV-mounted thermal camera. After identifying eight family groups in the acoustic data and incorporating long-term data, we estimate that the population was comprised of 74 individuals in 11 family groups, which is 38% smaller than previously thought. We have no evidence that the population has declined-indeed it appears to be growing, with new groups having formed in recent years-and the difference is instead due to double-counting of groups in previous surveys employing the triangulation method. Indeed, using spatially explicit capture-recapture modelling, we uncovered substantial measurement error in the bearings and distances from field teams. We also applied semi- and fully-automatic approaches to clustering the male calls into groups, finding no evidence that we had missed any males with the manual approach. Given the very small size of the population, conservation actions are now even more urgent, in particular habitat restoration to allow the population to expand. Our new population estimate now serves as a more robust basis for informing management actions and tracking conservation success over time.
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Affiliation(s)
| | - Hoang Trinh-Dinh
- School of Bioresources and Technology, King Mongkut's University of Technology Thonburi, Bangkok, Thailand
| | - Chang-Yong Ma
- College of Life Sciences, Guangxi Normal University, Guilin, China
| | | | | | | | | | - Tru Van Hua
- Trung Khanh Ranger Station, Forest Protection Department, Ministry of Agriculture and Rural Development, Trung Khanh, Cao Bang, Vietnam
| | - Quan Van Hoang
- Trung Khanh Ranger Station, Forest Protection Department, Ministry of Agriculture and Rural Development, Trung Khanh, Cao Bang, Vietnam
| | - Peng-Fei Fan
- School of Life Sciences, Sun Yat-sen University, Guangzhou, Guangdong, China
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6
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Arnaud V, Pellegrino F, Keenan S, St-Gelais X, Mathevon N, Levréro F, Coupé C. Improving the workflow to crack Small, Unbalanced, Noisy, but Genuine (SUNG) datasets in bioacoustics: The case of bonobo calls. PLoS Comput Biol 2023; 19:e1010325. [PMID: 37053268 PMCID: PMC10129004 DOI: 10.1371/journal.pcbi.1010325] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2022] [Revised: 04/25/2023] [Accepted: 03/01/2023] [Indexed: 04/15/2023] Open
Abstract
Despite the accumulation of data and studies, deciphering animal vocal communication remains challenging. In most cases, researchers must deal with the sparse recordings composing Small, Unbalanced, Noisy, but Genuine (SUNG) datasets. SUNG datasets are characterized by a limited number of recordings, most often noisy, and unbalanced in number between the individuals or categories of vocalizations. SUNG datasets therefore offer a valuable but inevitably distorted vision of communication systems. Adopting the best practices in their analysis is essential to effectively extract the available information and draw reliable conclusions. Here we show that the most recent advances in machine learning applied to a SUNG dataset succeed in unraveling the complex vocal repertoire of the bonobo, and we propose a workflow that can be effective with other animal species. We implement acoustic parameterization in three feature spaces and run a Supervised Uniform Manifold Approximation and Projection (S-UMAP) to evaluate how call types and individual signatures cluster in the bonobo acoustic space. We then implement three classification algorithms (Support Vector Machine, xgboost, neural networks) and their combination to explore the structure and variability of bonobo calls, as well as the robustness of the individual signature they encode. We underscore how classification performance is affected by the feature set and identify the most informative features. In addition, we highlight the need to address data leakage in the evaluation of classification performance to avoid misleading interpretations. Our results lead to identifying several practical approaches that are generalizable to any other animal communication system. To improve the reliability and replicability of vocal communication studies with SUNG datasets, we thus recommend: i) comparing several acoustic parameterizations; ii) visualizing the dataset with supervised UMAP to examine the species acoustic space; iii) adopting Support Vector Machines as the baseline classification approach; iv) explicitly evaluating data leakage and possibly implementing a mitigation strategy.
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Affiliation(s)
- Vincent Arnaud
- Département des arts, des lettres et du langage, Université du Québec à Chicoutimi, Chicoutimi, Canada
- Laboratoire Dynamique Du Langage, UMR 5596, Université de Lyon, CNRS, Lyon, France
| | - François Pellegrino
- Laboratoire Dynamique Du Langage, UMR 5596, Université de Lyon, CNRS, Lyon, France
| | - Sumir Keenan
- ENES Bioacoustics Research Laboratory, University of Saint Étienne, CRNL, CNRS UMR 5292, Inserm UMR_S 1028, Saint-Étienne, France
| | - Xavier St-Gelais
- Département des arts, des lettres et du langage, Université du Québec à Chicoutimi, Chicoutimi, Canada
| | - Nicolas Mathevon
- ENES Bioacoustics Research Laboratory, University of Saint Étienne, CRNL, CNRS UMR 5292, Inserm UMR_S 1028, Saint-Étienne, France
| | - Florence Levréro
- ENES Bioacoustics Research Laboratory, University of Saint Étienne, CRNL, CNRS UMR 5292, Inserm UMR_S 1028, Saint-Étienne, France
| | - Christophe Coupé
- Laboratoire Dynamique Du Langage, UMR 5596, Université de Lyon, CNRS, Lyon, France
- Department of Linguistics, The University of Hong Kong, Hong Kong, China
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7
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Lawson J, Rizos G, Jasinghe D, Whitworth A, Schuller B, Banks-Leite C. Automated acoustic detection of Geoffroy's spider monkey highlights tipping points of human disturbance. Proc Biol Sci 2023; 290:20222473. [PMID: 36919432 PMCID: PMC10015327 DOI: 10.1098/rspb.2022.2473] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/16/2023] Open
Abstract
As more land is altered by human activity and more species become at risk of extinction, it is essential that we understand the requirements for conserving threatened species across human-modified landscapes. Owing to their rarity and often sparse distributions, threatened species can be difficult to study and efficient methods to sample them across wide temporal and spatial scales have been lacking. Passive acoustic monitoring (PAM) is increasingly recognized as an efficient method for collecting data on vocal species; however, the development of automated species detectors required to analyse large amounts of acoustic data is not keeping pace. Here, we collected 35 805 h of acoustic data across 341 sites in a region over 1000 km2 to show that PAM, together with a newly developed automated detector, is able to successfully detect the endangered Geoffroy's spider monkey (Ateles geoffroyi), allowing us to show that Geoffroy's spider monkey was absent below a threshold of 80% forest cover and within 1 km of primary paved roads and occurred equally in old growth and secondary forests. We discuss how this methodology circumvents many of the existing issues in traditional sampling methods and can be highly successful in the study of vocally rare or threatened species. Our results provide tools and knowledge for setting targets and developing conservation strategies for the protection of Geoffroy's spider monkey.
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Affiliation(s)
- Jenna Lawson
- Grantham Institute, Imperial College London, UK.,Department of Life Sciences, Imperial College London, UK
| | - George Rizos
- GLAM - Group on Language, Audio, & Music, Imperial College London, UK
| | - Dui Jasinghe
- Department of Life Sciences, Imperial College London, UK
| | - Andrew Whitworth
- Osa Conservation, Conservation Science Team, Washington, DC 20005, USA.,Institute of Biodiversity, Animal Health, and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, Scotland, UK.,Department of Biology, Center for Energy, Environment, and Sustainability, Wake Forest University, Winston-Salem, NC 27109, USA
| | - Björn Schuller
- GLAM - Group on Language, Audio, & Music, Imperial College London, UK.,EIHW - Chair of Embedded Intelligence for Health Care and Wellbeing, University of Augsburg, Augsburg, Germany
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Clink DJ, Kier I, Ahmad AH, Klinck H. A workflow for the automated detection and classification of female gibbon calls from long-term acoustic recordings. Front Ecol Evol 2023. [DOI: 10.3389/fevo.2023.1071640] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2023] Open
Abstract
Passive acoustic monitoring (PAM) allows for the study of vocal animals on temporal and spatial scales difficult to achieve using only human observers. Recent improvements in recording technology, data storage, and battery capacity have led to increased use of PAM. One of the main obstacles in implementing wide-scale PAM programs is the lack of open-source programs that efficiently process terabytes of sound recordings and do not require large amounts of training data. Here we describe a workflow for detecting, classifying, and visualizing female Northern grey gibbon calls in Sabah, Malaysia. Our approach detects sound events using band-limited energy summation and does binary classification of these events (gibbon female or not) using machine learning algorithms (support vector machine and random forest). We then applied an unsupervised approach (affinity propagation clustering) to see if we could further differentiate between true and false positives or the number of gibbon females in our dataset. We used this workflow to address three questions: (1) does this automated approach provide reliable estimates of temporal patterns of gibbon calling activity; (2) can unsupervised approaches be applied as a post-processing step to improve the performance of the system; and (3) can unsupervised approaches be used to estimate how many female individuals (or clusters) there are in our study area? We found that performance plateaued with >160 clips of training data for each of our two classes. Using optimized settings, our automated approach achieved a satisfactory performance (F1 score ~ 80%). The unsupervised approach did not effectively differentiate between true and false positives or return clusters that appear to correspond to the number of females in our study area. Our results indicate that more work needs to be done before unsupervised approaches can be reliably used to estimate the number of individual animals occupying an area from PAM data. Future work applying these methods across sites and different gibbon species and comparisons to deep learning approaches will be crucial for future gibbon conservation initiatives across Southeast Asia.
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Comella I, Tasirin JS, Klinck H, Johnson LM, Clink DJ. Investigating note repertoires and acoustic tradeoffs in the duet contributions of a basal haplorrhine primate. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.910121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Acoustic communication serves a crucial role in the social interactions of vocal animals. Duetting—the coordinated singing among pairs of animals—has evolved independently multiple times across diverse taxonomic groups including insects, frogs, birds, and mammals. A crucial first step for understanding how information is encoded and transferred in duets is through quantifying the acoustic repertoire, which can reveal differences and similarities on multiple levels of analysis and provides the groundwork necessary for further studies of the vocal communication patterns of the focal species. Investigating acoustic tradeoffs, such as the tradeoff between the rate of syllable repetition and note bandwidth, can also provide important insights into the evolution of duets, as these tradeoffs may represent the physical and mechanical limits on signal design. In addition, identifying which sex initiates the duet can provide insights into the function of the duets. We have three main goals in the current study: (1) provide a descriptive, fine-scale analysis of Gursky’s spectral tarsier (Tarsius spectrumgurskyae) duets; (2) use unsupervised approaches to investigate sex-specific note repertoires; and (3) test for evidence of acoustic tradeoffs in the rate of note repetition and bandwidth of tarsier duet contributions. We found that both sexes were equally likely to initiate the duets and that pairs differed substantially in the duration of their duets. Our unsupervised clustering analyses indicate that both sexes have highly graded note repertoires. We also found evidence for acoustic tradeoffs in both male and female duet contributions, but the relationship in females was much more pronounced. The prevalence of this tradeoff across diverse taxonomic groups including birds, bats, and primates indicates the constraints that limit the production of rapidly repeating broadband notes may be one of the few ‘universals’ in vocal communication. Future carefully designed playback studies that investigate the behavioral response, and therefore potential information transmitted in duets to conspecifics, will be highly informative.
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10
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Investigating temporal coordination in the duet contributions of a pair-living small ape. Behav Ecol Sociobiol 2022. [DOI: 10.1007/s00265-022-03193-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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11
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Linhart P, Mahamoud-Issa M, Stowell D, Blumstein DT. The potential for acoustic individual identification in mammals. Mamm Biol 2022. [DOI: 10.1007/s42991-021-00222-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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12
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Clink DJ, Lau AR, Kanthaswamy S, Johnson LM, Bales KL. Moderate evidence for heritability in the duet contributions of a South American primate. J Evol Biol 2022; 35:51-63. [PMID: 34822207 PMCID: PMC9514391 DOI: 10.1111/jeb.13962] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2020] [Revised: 10/24/2021] [Accepted: 11/09/2021] [Indexed: 01/03/2023]
Abstract
Acoustic signals are ubiquitous across mammalian taxa. They serve a myriad of functions related to the formation and maintenance of social bonds and can provide conspecifics information about caller condition, motivation and identity. Disentangling the relative importance of evolutionary mechanisms that shape vocal variation is difficult, and little is known about heritability of mammalian vocalizations. Duetting--coordinated vocalizations within male and female pairs--arose independently at least four times across the Primate Order. Primate duets contain individual- or pair-level signatures, but the mechanisms that shape this variation remain unclear. Here, we test for evidence of heritability in two call types (pulses and chirps) from the duets of captive coppery titi monkeys (Plecturocebus cupreus). We extracted four features--note rate, duration, minimum and maximum fundamental frequency--from spectrograms of pulses and chirps, and estimated heritability of the features. We also tested whether features varied with sex or body weight. We found evidence for moderate heritability in one of the features examined (chirp note rate), whereas inter-individual variance was the most important source of variance for the rest of the features. We did not find evidence for sex differences in any of the features, but we did find that body weight and fundamental frequency of chirp elements covaried. Kin recognition has been invoked as a possible explanation for heritability or kin signatures in mammalian vocalizations. Although the function of primate duets remains a topic of debate, the presence of moderate heritability in titi monkey chirp elements indicates duets may serve a kin recognition function.
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Affiliation(s)
- Dena J. Clink
- K. Lisa Yang Center for Conservation Bioacoustics, Cornell Lab of Ornithology, Cornell University, Ithaca, NY, 14850
| | - Allison R. Lau
- Animal Behavior Graduate Group, University of California, Davis, Davis, CA, 95616,California National Primate Research Center, University of California, Davis, Davis, CA, 95616
| | - Sreetharan Kanthaswamy
- School of Mathematics and Natural Sciences, Arizona State University (ASU) at the West Campus, Glendale, AZ, USA,California National Primate Research Center, University of California, One Shields Ave, Davis, CA 95616, USA
| | - Lynn M. Johnson
- Cornell Statistical Consulting Unit, Cornell University, Ithaca, NY, USA
| | - Karen L. Bales
- Animal Behavior Graduate Group, University of California, Davis, Davis, CA, 95616,California National Primate Research Center, University of California, Davis, Davis, CA, 95616,Department of Psychology, University of California, Davis, One Shields Avenue, Davis, CA, 95616, USA,Department of Neurobiology, Physiology, and Behavior, University of California, Davis, CA, 95616, USA
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Clink DJ, Zafar M, Ahmad AH, Lau AR. Limited Evidence for Individual Signatures or Site-Level Patterns of Variation in Male Northern Gray Gibbon (Hylobates funereus) Duet Codas. INT J PRIMATOL 2021. [DOI: 10.1007/s10764-021-00250-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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14
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Schneider S, Goettlich S, Diercks C, Dierkes PW. Discrimination of Acoustic Stimuli and Maintenance of Graded Alarm Call Structure in Captive Meerkats. Animals (Basel) 2021; 11:ani11113064. [PMID: 34827796 PMCID: PMC8614505 DOI: 10.3390/ani11113064] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2021] [Revised: 10/22/2021] [Accepted: 10/25/2021] [Indexed: 11/25/2022] Open
Abstract
Simple Summary Preserving natural behaviors has many advantages for both research and animal welfare. Natural behaviors include producing vocalizations and responding to them. If it can be shown that the natural vocal repertoire is preserved in zoos, studies in zoos may help to expand the knowledge of acoustic behaviors and transfer it to animals in the wild. Once the meaning of diverse vocalizations is known, inferences can be made about an animal’s internal state in order to adapt and improve conditions for animals in zoos. In this paper, a natural and selective response of meerkats to potentially threatening acoustic signals such as the call of a predator is demonstrated. It can be shown that both the graded structure of meerkat alarm calls, which serves to convey the urgency of a dangerous situation, and the natural response to alarm calls are preserved. The obtained findings allow a continuation of the bioacoustic studies known for wild meerkats in zoos. The meerkat’s ability to already recognize acoustic signals as a potential threat may be crucial information for certain husbandry conditions. Vocalizing predators kept or naturally occurring near the meerkat enclosure form one example. The level of stress induced by potential threats and the associated alertness could be determined by using the graded alarm calls as a tool. Abstract Animals living in human care for several generations face the risk of losing natural behaviors, which can lead to reduced animal welfare. The goal of this study is to demonstrate that meerkats (Suricata suricatta) living in zoos can assess potential danger and respond naturally based on acoustic signals only. This includes that the graded information of urgency in alarm calls as well as a response to those alarm calls is retained in captivity. To test the response to acoustic signals with different threat potential, meerkats were played calls of various animals differing in size and threat (e.g., robin, raven, buzzard, jackal) while their behavior was observed. The emitted alarm calls were recorded and examined for their graded structure on the one hand and played back to them on the other hand by means of a playback experiment to see whether the animals react to their own alarm calls even in the absence of danger. A fuzzy clustering algorithm was used to analyze and classify the alarm calls. Subsequently, the features that best described the graded structure were isolated using the LASSO algorithm and compared to features already known from wild meerkats. The results show that the graded structure is maintained in captivity and can be described by features such as noise and duration. The animals respond to new threats and can distinguish animal calls that are dangerous to them from those that are not, indicating the preservation of natural cooperative behavior. In addition, the playback experiments show that the meerkats respond to their own alarm calls with vigilance and escape behavior. The findings can be used to draw conclusions about the intensity of alertness in captive meerkats and to adapt husbandry conditions to appropriate welfare.
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Clink DJ, Groves T, Ahmad AH, Klinck H. Not by the light of the moon: Investigating circadian rhythms and environmental predictors of calling in Bornean great argus. PLoS One 2021; 16:e0246564. [PMID: 33592004 PMCID: PMC7886196 DOI: 10.1371/journal.pone.0246564] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2020] [Accepted: 01/21/2021] [Indexed: 11/18/2022] Open
Abstract
Great argus pheasants are known for their elaborate visual mating displays, but relatively little is known about their general ecology. The use of passive acoustic monitoring-which relies on long-term autonomous recorders-can provide insight into the behavior of visually cryptic, yet vocal species such as the great argus. Here we report the results of an analysis of vocal behavior of the Bornean great argus (Argusianus argus grayi) in Sabah, Malaysia, using data collected with 11 autonomous recording units. Great argus regularly emitted two call types, the long call and the short call, and we found that although both call types were emitted throughout the day, the short calls were more likely to occur during the morning hours (06:00-12:00LT). Great argus were less likely to call if there was rain, irrespective of the time of day. A substantial portion of calls at our site (~20%) were emitted between the hours of 18:00-06:00LT. We found that for nighttime calls, calling activity increased during new moon periods and decreased during periods of rain. We attribute the negative influence of rain on calling to increased energetic costs of thermoregulation during wet periods, and propose that the influence of the lunar cycle may be related to increased predation risk during periods with high levels of moonlight. Little is known about the behavioral ecology of great argus on Borneo, so it is difficult to know if the results we report are typical, or if we would see differences in calling activity patterns depending on breeding season or changes in food availability. We advocate for future studies of great argus pheasant populations using paired camera and acoustic recorders, which can provide further insight into the behavior of this cryptic species.
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Affiliation(s)
- Dena J. Clink
- Center for Conservation Bioacoustics, Cornell Laboratory of Ornithology, Cornell University, Ithaca, NY, United States of America
| | - Tom Groves
- School of Physics and Astronomy, University of St. Andrews, Scotland, United Kingdom
| | - Abdul Hamid Ahmad
- Faculty of Sustainable Agriculture, University Malaysia Sabah, Sabah, Malaysia
| | - Holger Klinck
- Center for Conservation Bioacoustics, Cornell Laboratory of Ornithology, Cornell University, Ithaca, NY, United States of America
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16
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Clink DJ, Klinck H. Unsupervised acoustic classification of individual gibbon females and the implications for passive acoustic monitoring. Methods Ecol Evol 2020. [DOI: 10.1111/2041-210x.13520] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- Dena J. Clink
- Center for Conservation Bioacoustics Cornell Laboratory of Ornithology Cornell University Ithaca NY USA
| | - Holger Klinck
- Center for Conservation Bioacoustics Cornell Laboratory of Ornithology Cornell University Ithaca NY USA
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17
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Clink DJ, Lau AR. Adherence to Menzerath's Law is the exception (not the rule) in three duetting primate species. ROYAL SOCIETY OPEN SCIENCE 2020; 7:201557. [PMID: 33391812 PMCID: PMC7735330 DOI: 10.1098/rsos.201557] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2020] [Accepted: 10/27/2020] [Indexed: 05/04/2023]
Abstract
Across diverse systems including language, music and genomes, there is a tendency for longer sequences to contain shorter constituents; this phenomenon is known as Menzerath's Law. Whether Menzerath's Law is a universal in biological systems, is the result of compression (wherein shortest possible strings represent the maximum amount of information) or emerges from an inevitable relationship between sequence and constituent length remains a topic of debate. In non-human primates, the vocalizations of geladas, male gibbons and chimpanzees exhibit patterns consistent with Menzerath's Law. Here, we use existing datasets of three duetting primate species (tarsiers, titi monkeys and gibbons) to examine the wide-scale applicability of Menzerath's Law. Primate duets provide a useful comparative model to test for the broad-scale applicability of Menzerath's Law, as they evolved independently under presumably similar selection pressures and are emitted under the same context(s) across taxa. Only four out of the eight call types we examined were consistent with Menzerath's Law. Two of these call types exhibited a negative relationship between the position of the note in the call and note duration, indicating that adherence to Menzerath's Law in these call types may be related to breathing constraints. Exceptions to Menzerath's Law occur when notes are relatively homogeneous, or when species-specific call structure leads to a deterministic decrease in note duration. We show that adherence to Menzerath's Law is the exception rather than the rule in duetting primates. It is possible that selection pressures for long-range signals that can travel effectively over large distances was stronger than that of compression in primate duets. Future studies investigating adherence to Menzerath's Law across the vocal repertoires of these species will help us better elucidate the pressures that shape both short- and long-distance acoustic signals.
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Affiliation(s)
- Dena J. Clink
- Center for Conservation Bioacoustics, Cornell Lab of Ornithology, Cornell University, Ithaca, NY 14850, USA
| | - Allison R. Lau
- Animal Behavior Graduate Group, University of California, Davis, CA 95616, USA
- California National Primate Research Center, University of California, Davis, CA 95616, USA
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18
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Andrieu J, Penny SG, Bouchet H, Malaivijitnond S, Reichard UH, Zuberbühler K. White-handed gibbons discriminate context-specific song compositions. PeerJ 2020; 8:e9477. [PMID: 32832260 PMCID: PMC7409784 DOI: 10.7717/peerj.9477] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2019] [Accepted: 06/12/2020] [Indexed: 11/20/2022] Open
Abstract
White-handed gibbons produce loud and acoustically complex songs when interacting with their neighbours or when encountering predators. In both contexts, songs are assembled from a small number of units although their composition differs in context-specific ways. Here, we investigated whether wild gibbons could infer the ‘meaning’ when hearing exemplars recorded in both contexts (i.e. ‘duet songs’ vs. ‘predator songs’). We carried out a playback experiment by which we simulated the presence of a neighbouring group producing either its duet or a predator song in order to compare subjects’ vocal and locomotor responses. When hearing a recording of a duet song, subjects reliably responded with their own duet song, which sometimes elicited further duet songs in adjacent groups. When hearing a recording of a predator song, however, subjects typically remained silent, apart from one of six groups which replied with its own predator song. Moreover, in two of six trials, playbacks of predator songs elicited predator song replies in non-adjacent groups. Finally, all groups showed strong anti-predator behaviour to predator songs but never to duet songs. We concluded that white-handed gibbons discriminated between the two song types and were able to infer meaning from them. We discuss the implications of these findings in light of the current debate on the evolutionary origins of syntax.
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Affiliation(s)
- Julie Andrieu
- Department of Comparative Cognition, University of Neuchâtel, Neuchâtel, NE, Switzerland
| | - Samuel G Penny
- Department of Comparative Cognition, University of Neuchâtel, Neuchâtel, NE, Switzerland.,School of Pharmacy and Biomolecular Sciences, University of Brighton, Brighton, UK
| | - Hélène Bouchet
- School of Psychology and Neuroscience, University of St. Andrews, St. Andrews, UK
| | - Suchinda Malaivijitnond
- National Primate Research Center of Thailand, Chulalongkorn University, Saraburi, Thailand.,Department of Biology, Faculty of Science, Chulalongkorn University, Bangkok, Thailand
| | - Ulrich H Reichard
- Department of Anthropology and Centre for Ecology, Southern Illinois University at Carbondale, Carbondale, IL, USA
| | - Klaus Zuberbühler
- Department of Comparative Cognition, University of Neuchâtel, Neuchâtel, NE, Switzerland.,School of Psychology and Neuroscience, University of St. Andrews, St. Andrews, UK
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Lau AR, Clink DJ, Bales KL. Individuality in the vocalizations of infant and adult coppery titi monkeys (Plecturocebus cupreus). Am J Primatol 2020; 82:e23134. [PMID: 32298003 DOI: 10.1002/ajp.23134] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2019] [Revised: 03/25/2020] [Accepted: 03/27/2020] [Indexed: 11/08/2022]
Abstract
As social animals, many primates use acoustic communication to maintain relationships. Vocal individuality has been documented in a diverse range of primate species and call types, many of which have presumably different functions. Auditory recognition of one's neighbors may confer a selective advantage if identifying conspecifics decreases the need to participate in costly territorial behaviors. Alternatively, vocal individuality may be nonadaptive and the result of a unique combination of genetics and environment. Pair-bonded primates, in particular, often participate in coordinated vocal duets that can be heard over long distances by neighboring conspecifics. In contrast to adult calls, infant vocalizations are short-range and used for intragroup communication. Here, we provide two separate but complementary analyses of vocal individuality in distinct call types of coppery titi monkeys (Plecturocebus cupreus) to test whether individuality occurs in call types from animals of different age classes with presumably different functions. We analyzed 600 trill vocalizations from 30 infants and 169 pulse-chirp duet vocalizations from 30 adult titi monkeys. We predicted that duet contributions would exhibit a higher degree of individuality than infant trills, given their assumed function for long-distance, intergroup communication. We estimated 7 features from infant trills and 16 features from spectrograms of adult pulse-chirps, then used discriminant function analysis with leave-one-out cross-validation to classify individuals. We correctly classified infants with 48% accuracy and adults with 83% accuracy. To further investigate variance in call features, we used a multivariate variance components model to estimate variance partitioning in features across two levels: within- and between-individuals. Between-individual variance was the most important source of variance for all features in adults, and three of four features in infants. We show that pulse-chirps of adult titi monkey duets are individually distinct, and infant trills are less individually distinct, which may be due to the different functions of the vocalizations.
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Affiliation(s)
- Allison R Lau
- Animal Behavior Graduate Group, University of California-Davis, Davis, California.,California National Primate Research Center, University of California-Davis, Davis, California
| | - Dena J Clink
- Cornell Lab of Ornithology, Center for Conservation Bioacoustics, Cornell University, Ithaca, New York
| | - Karen L Bales
- Animal Behavior Graduate Group, University of California-Davis, Davis, California.,California National Primate Research Center, University of California-Davis, Davis, California.,Department of Psychology, University of California-Davis, Davis, California
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20
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Clink DJ, Ahmad AH, Klinck H. Brevity is not a universal in animal communication: evidence for compression depends on the unit of analysis in small ape vocalizations. ROYAL SOCIETY OPEN SCIENCE 2020; 7:200151. [PMID: 32431905 PMCID: PMC7211885 DOI: 10.1098/rsos.200151] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2020] [Accepted: 03/10/2020] [Indexed: 05/04/2023]
Abstract
Evidence for compression, or minimization of code length, has been found across biological systems from genomes to human language and music. Two linguistic laws-Menzerath's Law (which states that longer sequences consist of shorter constituents) and Zipf's Law of abbreviation (a negative relationship between signal length and frequency of use)-are predictions of compression. It has been proposed that compression is a universal in animal communication, but there have been mixed results, particularly in reference to Zipf's Law of abbreviation. Like songbirds, male gibbons (Hylobates muelleri) engage in long solo bouts with unique combinations of notes which combine into phrases. We found strong support for Menzerath's Law as the longer a phrase, the shorter the notes. To identify phrase types, we used state-of-the-art affinity propagation clustering, and were able to predict phrase types using support vector machines with a mean accuracy of 74%. Based on unsupervised phrase type classification, we did not find support for Zipf's Law of abbreviation. Our results indicate that adherence to linguistic laws in male gibbon solos depends on the unit of analysis. We conclude that principles of compression are applicable outside of human language, but may act differently across levels of organization in biological systems.
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Affiliation(s)
- Dena J. Clink
- Center for Conservation Bioacoustics, Cornell Laboratory of Ornithology, Cornell University, Ithaca, NY, USA
| | - Abdul Hamid Ahmad
- Faculty of Sustainable Agriculture, Universiti Malaysia Sabah, Sandakan Campus, Sabah, Malaysia
| | - Holger Klinck
- Center for Conservation Bioacoustics, Cornell Laboratory of Ornithology, Cornell University, Ithaca, NY, USA
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21
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Clink DJ, Tasirin JS, Klinck H. Vocal individuality and rhythm in male and female duet contributions of a nonhuman primate. Curr Zool 2020; 66:173-186. [PMID: 32440276 PMCID: PMC7233616 DOI: 10.1093/cz/zoz035] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2019] [Accepted: 06/13/2019] [Indexed: 12/02/2022] Open
Abstract
Duetting, or the stereotypical, repeated and often coordinated vocalizations between 2 individuals arose independently multiple times in the Order Primates. Across primate species, there exists substantial variation in terms of timing, degree of overlap, and sex-specificity of duet contributions. There is increasing evidence that primates can modify the timing of their duet contributions relative to their partner, and this vocal flexibility may have been an important precursor to the evolution of human language. Here, we present the results of a fine-scale analysis of Gursky's spectral tarsier Tarsius spectrumgurskyae duet phrases recorded in North Sulawesi, Indonesia. Specifically, we aimed to investigate individual-level variation in the female and male contributions to the duet, quantify individual- and pair-level differences in duet timing, and measure temporal precision of duetting individuals relative to their partner. We were able to classify female duet phrases to the correct individual with an 80% accuracy using support vector machines, whereas our classification accuracy for males was lower at 64%. Females were more variable than males in terms of timing between notes. All tarsier phrases exhibited some degree of overlap between callers, and tarsiers exhibited high temporal precision in their note output relative to their partners. We provide evidence that duetting tarsier individuals can modify their note output relative to their duetting partner, and these results support the idea that flexibility in vocal exchanges-a precursor to human language-evolved early in the primate lineage and long before the emergence of modern humans.
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Affiliation(s)
- Dena J Clink
- Bioacoustics Research Program, Cornell Lab of Ornithology, Cornell University, Ithaca, NY, 14850, USA
| | - Johny S Tasirin
- Faculty of Agriculture, Sam Ratulangi University, Manado, Indonesia
| | - Holger Klinck
- Bioacoustics Research Program, Cornell Lab of Ornithology, Cornell University, Ithaca, NY, 14850, USA
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22
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Male gibbon loud morning calls conform to Zipf's law of brevity and Menzerath's law: insights into the origin of human language. Anim Behav 2020. [DOI: 10.1016/j.anbehav.2019.11.017] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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23
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Clink DJ, Hamid Ahmad A, Klinck H. Gibbons aren't singing in the rain: presence and amount of rainfall influences ape calling behavior in Sabah, Malaysia. Sci Rep 2020; 10:1282. [PMID: 31992788 PMCID: PMC6987162 DOI: 10.1038/s41598-020-57976-x] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2019] [Accepted: 12/23/2019] [Indexed: 11/08/2022] Open
Abstract
Early morning calling occurs across diverse taxa, which may be related to optimal conditions for sound transmission. There exists substantial inter- and intra-specific variation in calling time which is influenced by intrinsic, social and/or environmental factors. Here, we investigate environmental predictors of calling in gibbons. We hypothesized that male solos- which occur earlier and tend to be longer than duets-would be more influenced by environmental variables, if earlier, longer calling bouts are energetically costly, and therefore limited by overnight energy expenditure. Our top model for male solo events included amount of rain in the previous 24 hours, and explained 30% of the variance, whereas the top model for duet events (which included presence and amount of rainfall) explained only 5% of the variance. Rain the previous night led to a later start time of male solos (~30 minutes), but our top model for duet start time did not include any reliable predictors. Male solo events appear to be more influenced by environmental factors, and duets may be influenced more by social factors. Our results are in line with previous studies that show that changes in overnight conditions -which may alter energy expenditure -can influence early morning calling behavior.
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Affiliation(s)
- Dena J Clink
- Center for Conservation Bioacoustics, Cornell Laboratory of Ornithology, Cornell University, 159 Sapsucker Woods Road, Ithaca, NY, 14850, USA.
| | - Abdul Hamid Ahmad
- Institute for Tropical Biology and Conservation, Universiti Malaysia Sabah (UMS), Kota Kinabalu, Sabah, Malaysia
| | - Holger Klinck
- Center for Conservation Bioacoustics, Cornell Laboratory of Ornithology, Cornell University, 159 Sapsucker Woods Road, Ithaca, NY, 14850, USA
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Augustine BC, Royle JA, Murphy SM, Chandler RB, Cox JJ, Kelly MJ. Spatial capture–recapture for categorically marked populations with an application to genetic capture–recapture. Ecosphere 2019. [DOI: 10.1002/ecs2.2627] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022] Open
Affiliation(s)
- Ben C. Augustine
- Atkinson Center for a Sustainable Future and Department of Natural Resources Cornell University Ithaca New York 14843 USA
| | - J. Andrew Royle
- Patuxent Wildlife Research Center U.S. Geological Survey Laurel Maryland 20708 USA
| | - Sean M. Murphy
- Department of Forestry University of Kentucky Lexington Kentucky 40546 USA
| | - Richard B. Chandler
- Department of Forestry and Natural Resources University of Georgia Athens Georgia 30602 USA
| | - John J. Cox
- Department of Forestry University of Kentucky Lexington Kentucky 40546 USA
| | - Marcella J. Kelly
- Department of Fish and Wildlife Conservation Virginia Tech Blacksburg Virginia 24061 USA
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Gibb R, Browning E, Glover‐Kapfer P, Jones KE. Emerging opportunities and challenges for passive acoustics in ecological assessment and monitoring. Methods Ecol Evol 2018. [DOI: 10.1111/2041-210x.13101] [Citation(s) in RCA: 184] [Impact Index Per Article: 26.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Rory Gibb
- Department of Genetics, Evolution and EnvironmentCentre for Biodiversity and Environment ResearchUniversity College London London UK
| | - Ella Browning
- Department of Genetics, Evolution and EnvironmentCentre for Biodiversity and Environment ResearchUniversity College London London UK
- Institute of ZoologyZoological Society of London London UK
| | - Paul Glover‐Kapfer
- WWF‐UKLiving Planet Centre Woking UK
- Flora & Fauna International David Attenborough Building Cambridge UK
| | - Kate E. Jones
- Department of Genetics, Evolution and EnvironmentCentre for Biodiversity and Environment ResearchUniversity College London London UK
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Evidence for High Variability in Temporal Features of the Male Coda in Müller’s Bornean Gibbons (Hylobates muelleri). INT J PRIMATOL 2018. [DOI: 10.1007/s10764-018-0061-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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Clink DJ, Grote MN, Crofoot MC, Marshall AJ. Understanding sources of variance and correlation among features of Bornean gibbon ( Hylobates muelleri) female calls. THE JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA 2018; 144:698. [PMID: 30180677 DOI: 10.1121/1.5049578] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2018] [Accepted: 07/19/2018] [Indexed: 06/08/2023]
Abstract
Acoustic signals serve important functions in mate choice, resource defense, and species recognition. Quantifying patterns and sources of variation in acoustic signals can advance understanding of the evolutionary processes that shape behavioral diversity more broadly. Animal vocalization datasets are inherently multivariate and hierarchical, wherein multiple features are estimated from calls of many individuals across different recording locations. Patterns of variation within different hierarchical levels-notwithstanding the challenges they present for modeling and inference-can provide insight into processes shaping vocal variation. The current work presents a multivariate, variance components model to investigate three levels of variance (within-female, between-female, and between-site) in Bornean gibbon calls. For six of the eight features estimated from call spectrograms, between-female variance was the most important contributor to total variance. For one feature, trill rate, there were site-level differences, which may be related to geographic isolation of certain gibbon populations. There was also a negative relationship between trill rate and duration of the introduction, suggesting trade-offs in the production of gibbon calls. Given substantial inter-individual variation in gibbon calls, it seems likely that there has been selection to confer information regarding caller identity, but mechanisms leading to site-level variation in trill rate remain to be determined.
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Affiliation(s)
- Dena J Clink
- Department of Anthropology, University of California, Davis, One Shields Avenue, Davis, California 95616, USA
| | - Mark N Grote
- Department of Anthropology, University of California, Davis, One Shields Avenue, Davis, California 95616, USA
| | - Margaret C Crofoot
- Department of Anthropology, University of California, Davis, One Shields Avenue, Davis, California 95616, USA
| | - Andrew J Marshall
- Department of Anthropology, Program in the Environment, Department of Ecology and Evolutionary Biology, and School for Environment and Sustainability, University of Michigan, 101 West Hall, 1085 South University Avenue, Ann Arbor, Michigan 48109, USA
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Clink DJ, Charif RA, Crofoot MC, Marshall AJ. Evidence for vocal performance constraints in a female nonhuman primate. Anim Behav 2018. [DOI: 10.1016/j.anbehav.2018.05.002] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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Terleph TA, Malaivijitnond S, Reichard UH. An analysis of white-handed gibbon male song reveals speech-like phrases. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY 2018; 166:649-660. [PMID: 29508909 DOI: 10.1002/ajpa.23451] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2017] [Revised: 02/12/2018] [Accepted: 02/15/2018] [Indexed: 11/10/2022]
Abstract
OBJECTIVES Our goal was to document song phrases of the white-handed gibbon (Hylobates lar), an Asian ape that produces elaborate songs, often in well-coordinated male/female duets. We focused on the male coda, which is produced during vocal turn-taking with one's mate, and particularly its phrases containing rapid spectral and temporal variation, to investigate if modulation rates resemble those of lip-smacking in other nonhuman primates and human speech rhythm. MATERIALS AND METHODS We produced recordings from a large population of wild gibbons. Using terminology consistent with that used to describe vocalizations in other singing species, we analyzed coda phrases, overall coda properties, coda distinctiveness across individuals, and flexibility of phrase production within song bouts. RESULTS Our song phrase-level analysis showed that male codas differed between individuals and increase in complexity within song bouts by the addition of the only two male-specific phrases of the species' repertoire. These phrases differ from all others of the species and from vocalizations typical of the larger, nonhuman great apes, in that they contain rapid within-phrase modulation. Their modulation rates (6.82 and 7.34 Hz) are similar to that of lip-smacking in other nonhuman primates and speech in humans and, like human speech, are produced exclusively during exhalation. One phrase type (trills) contains multiple notes per exhalation, another characteristic similar to speech but not most primate vocalizations. DISCUSSION Our data highlight the complexity and flexibility of gibbon song, and show that particular phrase features likely arose from sexual selection pressures and possess similarities to human speech rhythm.
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Affiliation(s)
| | - S Malaivijitnond
- National Primate Research Center of Thailand, Cham Phak Pheo, Saraburi, Thailand.,Department of Biology, Faculty of Science, Chulalongkorn University, Thailand
| | - U H Reichard
- Department of Anthropology and Center for Ecology, Southern Illinois University Carbondale, Illinois
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Clink DJ, Crofoot MC, Marshall AJ. Application of a semi-automated vocal fingerprinting approach to monitor Bornean gibbon females in an experimentally fragmented landscape in Sabah, Malaysia. BIOACOUSTICS 2018. [DOI: 10.1080/09524622.2018.1426042] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Dena J. Clink
- Department of Anthropology, University of California, Davis, Davis, CA, USA
| | - Margaret C. Crofoot
- Department of Anthropology, University of California, Davis, Davis, CA, USA
- Smithsonian Tropical Research Institute, Balboa Ancon, Republic of Panama
| | - Andrew J. Marshall
- Department of Anthropology, Program in the Environment, and School for Natural Resources and Environment, University of Michigan, Ann Arbor, MI, USA
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Torti V, Bonadonna G, De Gregorio C, Valente D, Randrianarison RM, Friard O, Pozzi L, Gamba M, Giacoma C. An intra-population analysis of the indris' song dissimilarity in the light of genetic distance. Sci Rep 2017; 7:10140. [PMID: 28860569 PMCID: PMC5579264 DOI: 10.1038/s41598-017-10656-9] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2017] [Accepted: 08/07/2017] [Indexed: 11/10/2022] Open
Abstract
The increasing interest in the evolution of human language has led several fields of research to focus on primate vocal communication. The 'singing primates', which produce elaborated and complex sequences of vocalizations, are of particular interest for this topic. Indris (Indri indri) are the only singing lemurs and emit songs whose most distinctive portions are "descending phrases" consisting of 2-5 units. We examined how the structure of the indris' phrases varied with genetic relatedness among individuals. We tested whether the acoustic structure could provide conspecifics with information about individual identity and group membership. When analyzing phrase dissimilarity and genetic distance of both sexes, we found significant results for males but not for females. We found that similarity of male song-phrases correlates with kin in both time and frequency parameters, while, for females, this information is encoded only in the frequency of a single type. Song phrases have consistent individual-specific features, but we did not find any potential for advertising group membership. We emphasize the fact that genetic and social factors may play a role in the acoustic plasticity of female indris. Altogether, these findings open a new perspective for future research on the possibility of vocal production learning in these primates.
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Affiliation(s)
- Valeria Torti
- Department of Life Sciences and Systems Biology (DBIOS), University of Torino, Torino, Italy
| | - Giovanna Bonadonna
- Department of Life Sciences and Systems Biology (DBIOS), University of Torino, Torino, Italy
| | - Chiara De Gregorio
- Department of Life Sciences and Systems Biology (DBIOS), University of Torino, Torino, Italy
| | - Daria Valente
- Department of Life Sciences and Systems Biology (DBIOS), University of Torino, Torino, Italy
| | - Rose Marie Randrianarison
- Département de Paléontologie et d'Anthropologie Biologique, Faculté des Sciences, Université d'Antananarivo, Antananarivo, Madagascar
- Groupe d'étude et de recherche sur les primates de Madagascar (GERP), Antananarivo, Madagascar
| | - Olivier Friard
- Department of Life Sciences and Systems Biology (DBIOS), University of Torino, Torino, Italy
| | - Luca Pozzi
- Department of Anthropology, The University of Texas at San Antonio, One UTSA Circle, San Antonio, TX, 78249, United States of America
| | - Marco Gamba
- Department of Life Sciences and Systems Biology (DBIOS), University of Torino, Torino, Italy.
| | - Cristina Giacoma
- Department of Life Sciences and Systems Biology (DBIOS), University of Torino, Torino, Italy
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