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Rashid S, Siddiqa A, Agama FT, Idrees N, Alharthi MS. Poisson random measure noise-induced coherence in epidemiological priors informed deep neural networks to identify the intensity of virus dynamics. Sci Rep 2025; 15:17150. [PMID: 40382439 PMCID: PMC12085636 DOI: 10.1038/s41598-025-94086-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2024] [Accepted: 03/11/2025] [Indexed: 05/20/2025] Open
Abstract
Differential equations-based epidemiological compartmental systems and deep neural networks-based artificial intelligence can effectively analyze and combat monkeypox (MPV) transmission with Poisson random measure noise into a stochastic SEIQR (susceptible, exposed, infected, quarantined, recovered) model human population and SEI (susceptible, exposed, infected) for rodent population. Compartmental models have estimates of parameter complications, whereas machine learning algorithms struggle to understand MPV's progression and lack elucidation. This research introduces Levenberg Marquardt backpropagation neural networks (LMBNNS) in training, a new approach that combines compartmental frameworks with artificial neural networks (ANNs) to explain the complex mechanisms of MPV. Meanwhile, a model description proves the existence and uniqueness of a global positive solution. A threshold parameter is determined and employed to identify the factors that lead to infection in the general public. Furthermore, other criteria are developed to eliminate the infection within the entire population. The MPV is eliminated if [Formula: see text], but continues if [Formula: see text]. The study depends on two functional scenarios to quantitatively clarify the theoretical results. An adapted dataset is generated employing the Adam algorithm to minimize the mean square error (MSE) by setting its data effectiveness to 81% for training, 9% for testing, and 10% for validation. The solver's accuracy is validated by minimal absolute error and complementing responses to every hypothetical situation. In order to verify the adaptation's reliability and precision, productivity is measured using the error histogram, changeover state, and prediction for addressing the MPV model. Visual representations are used to illustrate the investigation and compare results. Utilizing this hybrid approach, we want to increase our comprehension of disease propagation, strengthen forecasting competencies, and influence more efficient public health actions. The combination of stochastic processes and machine learning approaches creates a powerful tool for capturing the inherent uncertainties in infectious disease dynamics, as well as a more accurate framework for real-time epidemic prediction and prevention.
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Affiliation(s)
- Saima Rashid
- Department of Mathematics, Government College University, Faisalabad, 38000, Pakistan
| | - Ayesha Siddiqa
- Department of Mathematics, Government College University, Faisalabad, 38000, Pakistan
| | | | - Nazeran Idrees
- Department of Mathematics, Government College University, Faisalabad, 38000, Pakistan
| | - Mohammed Shaaf Alharthi
- Department of Mathematics, College of Science, Taif University, P.O. Box 11099, Taif, 21944, Saudi Arabia
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2
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Kumar Saha D, Rafi S, Mridha MF, Alfarhood S, Safran M, Kabir MM, Dey N. Mpox-XDE: an ensemble model utilizing deep CNN and explainable AI for monkeypox detection and classification. BMC Infect Dis 2025; 25:403. [PMID: 40133816 PMCID: PMC11934716 DOI: 10.1186/s12879-025-10811-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2024] [Accepted: 03/17/2025] [Indexed: 03/27/2025] Open
Abstract
The daily surge in cases in many nations has made the growing number of human monkeypox (Mpox) cases an important global concern. Therefore, it is imperative to identify Mpox early to prevent its spread. The majority of studies on Mpox identification have utilized deep learning (DL) models. However, research on developing a reliable method for accurately detecting Mpox in its early stages is still lacking. This study proposes an ensemble model composed of three improved DL models to more accurately classify Mpox in its early phases. We used the widely recognized Mpox Skin Images Dataset (MSID), which includes 770 images. The enhanced Swin Transformer (SwinViT), the proposed ensemble model Mpox-XDE, and three modified DL models-Xception, DenseNet201, and EfficientNetB7-were used. To generate the ensemble model, the three DL models were combined via a Softmax layer, a dense layer, a flattened layer, and a 65% dropout. Four neurons in the final layer classify the dataset into four categories: chickenpox, measles, normal, and Mpox. Lastly, a global average pooling layer is implemented to classify the actual class. The Mpox-XDE model performed exceptionally well, achieving testing accuracy, precision, recall, and F1-score of 98.70%, 98.90%, 98.80%, and 98.80%, respectively. Finally, the popular explainable artificial intelligence (XAI) technique, Gradient-weighted Class Activation Mapping (Grad-CAM), was applied to the convolutional layer of the Mpox-XDE model to generate overlaid areas that effectively highlight each illness class in the dataset. This proposed methodology will aid professionals in diagnosing Mpox early in a patient's condition.
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Affiliation(s)
- Dip Kumar Saha
- Department of CSE, Stamford University Bangladesh, Siddeswari, Dhaka, Bangladesh
| | - Sadman Rafi
- Department of CSE, American International University-Bangladesh, Kuratoli, Dhaka, Bangladesh
| | - M F Mridha
- Department of CSE, American International University-Bangladesh, Kuratoli, Dhaka, Bangladesh.
| | - Sultan Alfarhood
- Department of Computer Science, College of Computer and Information Sciences, King Saud University, Riyadh, 11543, Saudi Arabia
| | - Mejdl Safran
- Department of Computer Science, College of Computer and Information Sciences, King Saud University, Riyadh, 11543, Saudi Arabia.
| | - Md Mohsin Kabir
- Division of Computer Science and Software Engineering, Mälardalens University, 722 20, Västerås, Sweden
| | - Nilanjan Dey
- Department of CSE, Techno International New Town, New Town, West Bengal, India
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3
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Chen H, Cheng X, Wang Y, Han N, Liu L, Wei H, Tu Z, Gu Z, Song R, Wang S, Rong Z. Two-Dimensional Nanozyme-Catalyzed Colorimetric CRISPR Assay for the Microfluidic Detection of Monkeypox Virus. Anal Chem 2025; 97:4407-4415. [PMID: 39965890 DOI: 10.1021/acs.analchem.4c05570] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/20/2025]
Abstract
The recent monkeypox epidemic outbreaks worldwide highlight the urgent need for fast and precise diagnostic solutions, especially in resource-limited settings. Here, a two-dimensional nanozyme-catalyzed colorimetric CRISPR assay for the microfluidic detection of the monkeypox virus (MPXV) was established. We utilized graphene oxide as a substrate for the adsorption of gold seeds and the deposition of a porous Pt shell to prepare high-performance two-dimensional GO@Pt nanomaterials. The viral nucleic acids released from clinical samples initiated a single-step recombinase polymerase amplification-CRISPR/Cas13a for the trans-cleavage of ssRNA reporters labeled with FAM and biotin. These reporters can be recognized by FAM antibody-conjugated GO@Pt nanozymes and streptavidin-coated magnetic beads. The formed sandwich immunocomplexes can catalyze the oxidation of a colorless 3,3',5,5'-tetramethylbenzidine substrate with a distinct color change. The proposed GO@Pt-catalyzed colorimetric CRISPR assay exhibited a limit of detection of 1 copy/μL of MPXV in 60 min. Forty clinical samples, including rash fluid swabs and oral swabs, were tested with 100% agreement with the real-time PCR. These results indicate the excellent potential of GO@Pt-catalyzed colorimetric CRISPR for the sensitive and accurate testing of MPXV under resource-constrained conditions.
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Affiliation(s)
- Hong Chen
- Bioinformatics Center of AMMS, Beijing 100850, China
| | - Xiaodan Cheng
- Bioinformatics Center of AMMS, Beijing 100850, China
| | - Yunxiang Wang
- Bioinformatics Center of AMMS, Beijing 100850, China
| | - Ning Han
- Beijing Ditan Hospital, Capital Medical University, Beijing 100015, China
| | - Liyan Liu
- Bioinformatics Center of AMMS, Beijing 100850, China
| | - Hongjuan Wei
- Bioinformatics Center of AMMS, Beijing 100850, China
| | - Zhijie Tu
- Bioinformatics Center of AMMS, Beijing 100850, China
| | - Zhixia Gu
- Beijing Ditan Hospital, Capital Medical University, Beijing 100015, China
| | - Rui Song
- Beijing Ditan Hospital, Capital Medical University, Beijing 100015, China
| | - Shengqi Wang
- Bioinformatics Center of AMMS, Beijing 100850, China
- State Key Laboratory of Kidney Diseases, Beijing 100853, PR China
| | - Zhen Rong
- Bioinformatics Center of AMMS, Beijing 100850, China
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4
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Zhang W, Zhang J, Liu QH, Zhao S, Li WQ, Ma JJ, Lu X, Boccaletti S, Sun GQ. Behavior changes influence mpox transmission in the United States, 2022-2023: Insights from homogeneous and heterogeneous models. PNAS NEXUS 2025; 4:pgaf025. [PMID: 39925853 PMCID: PMC11803423 DOI: 10.1093/pnasnexus/pgaf025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/13/2024] [Accepted: 01/02/2025] [Indexed: 02/11/2025]
Abstract
In 2022, an unprecedented mpox epidemic rapidly swept the globe, primarily transmitted through sexual contact among men who have sex with men (MSM). However, our understanding of how changes in human behavior influence this outbreak remains incomplete. In this study, we introduce a two-layer network model to investigate the impact of human behavior on mpox transmission within the United States during 2022-2023, leveraging surveillance data. We theoretically explore mpox transmission under behavioral changes using homogeneous and heterogeneous mean-field approximations. While the heterogeneous model captures differences in individual behavior, its variations do not significantly affect the overall spread, validating the feasibility of using only homogeneous models to study behavioral changes. Utilizing infection data, we exhibit the influence of behavior changes across varying transmission levels of mpox, emphasize the significant role of sexual behavior among MSM, and recommend enhancing surveillance of nonsexual cases to enable timely control of spread. Utilizing vaccination data, we demonstrate the critical impact of behavior changes on the transmission capacity of mpox virus, contrasting the limited effectiveness of vaccine campaigns. This study highlights the importance of human behavior in controlling the spread of future outbreaks, offering valuable insights for the strategic development of public health interventions aimed at mitigating such occurrences.
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Affiliation(s)
- Wei Zhang
- Data Science and Technology, North University of China, Taiyuan, Shanxi 030051, China
- School of Mathematics, North University of China, Taiyuan, Shanxi 030051, China
| | - Juan Zhang
- Complex Systems Research Center, Shanxi University, Taiyuan, Shanxi 030006, China
| | - Quan-Hui Liu
- College of Computer Science, Sichuan University, Chengdu, Sichuan 610065, China
| | - Shi Zhao
- School of Public Health, Tianjin Medical University, Tianjin 300070, China
| | - Wei-Qiang Li
- School of Mathematics, North University of China, Taiyuan, Shanxi 030051, China
| | - Jun-Jie Ma
- School of Mathematics, North University of China, Taiyuan, Shanxi 030051, China
| | - Xin Lu
- College of Systems Engineering, National University of Defense Technology, Changsha, Hunan 410073, China
| | - Stefano Boccaletti
- Sino-Europe Complex Science Center, North University of China, Taiyuan, Shanxi 030051, China
- CNR - Institute of Complex Systems, Via Madonna del Piano 10, Sesto Fiorentino I-50019, Italy
- Research Institute of Interdisciplinary Intelligent Science, Ningbo University of Technology, Ningbo, Zhejiang 315104, China
| | - Gui-Quan Sun
- School of Mathematics, North University of China, Taiyuan, Shanxi 030051, China
- Complex Systems Research Center, Shanxi University, Taiyuan, Shanxi 030006, China
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5
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Cao Y, Yue Y, Ma X, Liu D, Ni R, Liang H, Li Z. Robustly detecting mpox and non-mpox using a deep learning framework based on image inpainting. Sci Rep 2025; 15:1576. [PMID: 39794381 PMCID: PMC11723949 DOI: 10.1038/s41598-025-85771-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2024] [Accepted: 01/06/2025] [Indexed: 01/13/2025] Open
Abstract
Due to the lack of efficient mpox diagnostic technology, mpox cases continue to increase. Recently, the great potential of deep learning models in detecting mpox and non-mpox has been proven. However, existing methods are susceptible to interference from various noises in real-world settings, require diverse non-mpox images, and fail to detect abnormal input, which makes them unsuitable for practical deployment and application. To address these challenges, we proposed a novel strategy based on image inpainting called "Mask, Inpainting, and Measure" (MIM). In MIM's pipeline, a generative adversarial network learns feature representations of mpox images by inpainting the masked mpox images. On this basis, MIM measure the similarity between the inpainted image and the original image to detect mpox and non-mpox. Compared with multi-class classification models, MIM can handle unknown categories and abnormal inputs more effectively. We used the recognized mpox dataset (MSLD) and a dataset containing 18 categories of non-mpox skin diseases to verify the effectiveness and robustness of MIM. Experimental results show that the average AUROC of MIM achieves 0.8237. In addition, external clinical testing further demonstrates the robustness of MIM. Importantly, we developed a free smartphone app to help the public and healthcare professionals detect mpox more conveniently.
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Affiliation(s)
- Yujun Cao
- Department of Basic Courses, Guangzhou Maritime University, Guangzhou, 510725, China
| | - Yubiao Yue
- School of Biomedical Engineering, The Second Affiliated Hospital of Guangzhou Medical University, Guangzhou Medical University, Guangzhou, 511436, China
| | - Xiaoming Ma
- Department of Basic Courses, Guangzhou Maritime University, Guangzhou, 510725, China
| | - Di Liu
- Department of Basic Courses, Guangzhou Maritime University, Guangzhou, 510725, China
| | - Rongkai Ni
- School of Biomedical Engineering, The Second Affiliated Hospital of Guangzhou Medical University, Guangzhou Medical University, Guangzhou, 511436, China
| | - Haihua Liang
- School of Mathematics and Systems Science, Guangdong Polytechnic Normal University, No. 293, Zhongshan Avenue West, Tianhe District, Guangzhou, 510665, China
| | - Zhenzhang Li
- School of Mathematics and Systems Science, Guangdong Polytechnic Normal University, No. 293, Zhongshan Avenue West, Tianhe District, Guangzhou, 510665, China.
- School of Biomedical Engineering, The Second Affiliated Hospital of Guangzhou Medical University, Guangzhou Medical University, Guangzhou, 511436, China.
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6
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Almars AM. DeepGenMon: A Novel Framework for Monkeypox Classification Integrating Lightweight Attention-Based Deep Learning and a Genetic Algorithm. Diagnostics (Basel) 2025; 15:130. [PMID: 39857013 PMCID: PMC11763561 DOI: 10.3390/diagnostics15020130] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2024] [Revised: 12/26/2024] [Accepted: 01/06/2025] [Indexed: 01/27/2025] Open
Abstract
Background: The rapid global spread of the monkeypox virus has led to serious issues for public health professionals. According to related studies, monkeypox and other types of skin conditions can spread through direct contact with infected animals, humans, or contaminated items. This disease can cause fever, headaches, muscle aches, and enlarged lymph nodes, followed by a rash that develops into lesions. To facilitate the early detection of monkeypox, researchers have proposed several AI-based techniques for accurately classifying and identifying the condition. However, there is still room for improvement to accurately detect and classify monkeypox cases. Furthermore, the currently proposed pre-trained deep learning models can consume extensive resources to achieve accurate detection and classification of monkeypox. Hence, these models often need significant computational power and memory. Methods: This paper proposes a novel lightweight framework called DeepGenMonto accurately classify various types of skin diseases, such as chickenpox, melasma, monkeypox, and others. This suggested framework leverages an attention-based convolutional neural network (CNN) and a genetic algorithm (GA) to enhance detection accuracy while optimizing the hyperparameters of the proposed model. It first applies the attention mechanism to highlight and assign weights to specific regions of an image that are relevant to the model's decision-making process. Next, the CNN is employed to process the visual input and extract hierarchical features for classifying the input data into multiple classes. Finally, the CNN's hyperparameters are adjusted using a genetic algorithm to enhance the model's robustness and classification accuracy. Compared to the state-of-the-art (SOTA) models, DeepGenMon features a lightweight design that requires significantly lower computational resources and is easier to train with few parameters. Its effective integration of a CNN and an attention mechanism with a GA further enhances its performance, making it particularly well suited for low-resource environments. DeepGenMon is evaluated on two public datasets. The first dataset comprises 847 images of diverse skin diseases, while the second dataset contains 659 images classified into several categories. Results: The proposed model demonstrates superior performance compared to SOTA models across key evaluation metrics. On dataset 1, it achieves a precision of 0.985, recall of 0.984, F-score of 0.985, and accuracy of 0.985. Similarly, on dataset 2, the model attains a precision of 0.981, recall of 0.982, F-score of 0.982, and accuracy of 0.982. Moreover, the findings demonstrate the model's ability to achieve an inference time of 2.9764 s on dataset 1 and 2.1753 s on dataset 2. Conclusions: These results also show DeepGenMon's effectiveness in accurately classifying different skin conditions, highlighting its potential as a reliable and low-resource tool in clinical settings.
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Affiliation(s)
- Abdulqader M Almars
- Department of Computer Science, College of Computer Science and Engineering, Taibah University, Yanbu 46421, Saudi Arabia
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7
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Abdelrahim EM, Hashim H, Atlam ES, Osman RA, Gad I. TMS: Ensemble Deep Learning Model for Accurate Classification of Monkeypox Lesions Based on Transformer Models with SVM. Diagnostics (Basel) 2024; 14:2638. [PMID: 39682546 DOI: 10.3390/diagnostics14232638] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2024] [Revised: 11/20/2024] [Accepted: 11/21/2024] [Indexed: 12/18/2024] Open
Abstract
BACKGROUND/OBJECTIVES The emergence of monkeypox outside its endemic region in Africa has raised significant concerns within the public health community due to its rapid global dissemination. Early clinical differentiation of monkeypox from similar diseases, such as chickenpox and measles, presents a challenge. The Monkeypox Skin Lesion Dataset (MSLD) used in this study comprises monkeypox skin lesions, which were collected primarily from publicly accessible sources. The dataset contains 770 original images captured from 162 unique patients. The MSLD includes four distinct class labels: monkeypox, measles, chickenpox, and normal. METHODS This paper presents an ensemble model for classifying the monkeypox dataset, which includes transformer models and support vector machine (SVM). The model development process begins with an evaluation of seven convolutional neural network (CNN) architectures. The proposed model is developed by selecting the top four models based on evaluation metrics for performance. The top four CNN architectures, namely EfficientNetB0, ResNet50, MobileNet, and Xception, are used for feature extraction. The high-dimensional feature vectors extracted from each network are then concatenated and optimized before being inputted into the SVM classifier. RESULTS The proposed ensemble model, in conjunction with the SVM classifier, achieves an accuracy of 95.45b%. Furthermore, the model demonstrates high precision (95.51%), recall (95.45%), and F1 score (95.46%), indicating its effectiveness in identifying monkeypox lesions. CONCLUSIONS The results of the study show that the proposed hybrid framework achieves robust diagnostic performance in monkeypox detection, offering potential utility for enhanced disease monitoring and outbreak management. The model's high diagnostic accuracy and computational efficiency indicate that it can be used as an additional tool for clinical decision support.
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Affiliation(s)
- Elsaid Md Abdelrahim
- Computer Science Department, Science College, Northern Border University (NBU), Arar 73213, Saudi Arabia
- Computer Science Department, Faculty of Science, Tanta University, Tanta 31527, Egypt
| | - Hasan Hashim
- Department of Computer Science, College of Computer Science and Engineering, Taibah University, Yanbu 46421, Saudi Arabia
| | - El-Sayed Atlam
- Computer Science Department, Faculty of Science, Tanta University, Tanta 31527, Egypt
- Department of Computer Science, College of Computer Science and Engineering, Taibah University, Yanbu 46421, Saudi Arabia
| | - Radwa Ahmed Osman
- Basic and Applied Science Institute, College of Engineering and Technology, Arab Academy for Science and Technology (AAST), Alexandria 1029, Egypt
| | - Ibrahim Gad
- Computer Science Department, Faculty of Science, Tanta University, Tanta 31527, Egypt
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8
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Abdellatef E, Ismail AH, Fath Allah MI, Shalaby WA. Leveraging convolutional neural networks and hashing techniques for the secure classification of monkeypox disease. Sci Rep 2024; 14:26579. [PMID: 39496621 PMCID: PMC11535243 DOI: 10.1038/s41598-024-75030-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2024] [Accepted: 10/01/2024] [Indexed: 11/06/2024] Open
Abstract
The World Health Organization declared a state of emergency in 2022 because of monkeypox. This disease has raised international concern as it has spread beyond Africa, where it is endemic. The global community has shown attention and solidarity in combating this disease as its daily increase becomes evident. Various skin symptoms appear in people infected with this disease, which can spread easily, especially in a polluted environment. It is difficult to diagnose monkeypox in its early stages because of its similarity with the symptoms of other diseases such as chicken pox and measles. Recently, computer-aided classification methods such as deep learning and machine learning within artificial intelligence have been employed to detect various diseases, including COVID-19, tumor cells, and Monkeypox, in a short period and with high accuracy. In this study, we propose the CanDark model, an end-to-end deep-learning model that incorporates cancelable biometrics for diagnosing Monkeypox. CanDark stands for cancelable DarkNet-53, which means that DarkNet-53 CNN is utilized for extracting deep features from Monkeypox skin images. Then a cancelable method is applied to these features to protect patient information. Various cancelable techniques have been evaluated, such as bio-hashing, multilayer perceptron (MLP) hashing, index-of-maximum Gaussian random projection-based hashing (IoM-GRP), and index-of-maximum uniformly random permutation-based hashing (IoM-URP). The proposed approach's performance is evaluated using various assessment issues such as accuracy, specificity, precision, recall, and fscore. Using the IoM-URP, the CanDark model is superior to other state-of-the-art Monkeypox diagnostic techniques. The proposed framework achieved an accuracy of 98.81%, a specificity of 98.73%, a precision of 98.9%, a recall of 97.02%, and fscore of 97.95%.
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Affiliation(s)
- Essam Abdellatef
- Department of Electrical Engineering, Faculty of Engineering, Sinai University, El-Arish, 45511, Egypt
| | - Alshimaa H Ismail
- Information Technology Department, Faculty of Computer and Informatics, Tanta University, Tanta, 31527, Egypt.
| | - M I Fath Allah
- Department of Electrical Engineering, Faculty of Engineering, Suez University, Suez, 43533, Egypt
| | - Wafaa A Shalaby
- Department of Electronic and Electrical Communication Engineering, Faculty of Electronic Engineering, Menoufia University, Menouf, Egypt
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Deng J, Liu J, Kong C, Zang B, Hu Y, Zou M. Using novel deep learning models for rapid and efficient assistance in monkeypox screening from skin images. Front Med (Lausanne) 2024; 11:1443812. [PMID: 39346943 PMCID: PMC11427940 DOI: 10.3389/fmed.2024.1443812] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2024] [Accepted: 08/26/2024] [Indexed: 10/01/2024] Open
Abstract
Monkeypox, a communicable disease instigated by the monkeypox virus, transmits through direct contact with infectious skin lesions or mucosal blisters, posing severe complications such as pneumonia, encephalitis, and even fatality. Traditional clinical diagnostics, heavily reliant on the discerning judgment of clinical experts, are both time-consuming and labor-intensive, with inherent infection risks, underscoring the critical need for automated, efficient auxiliary diagnostic models. In response, we have developed a deep learning classification model augmented by self-attention mechanisms and feature pyramid integration, employing attentional strategies to amalgamate image features across varying scales and assimilating a priori knowledge from the VGG model to selectively capture salient features. Aiming to enhance task performance and model generalizability, we incorporated different components into the baseline model in a series of ablation studies, revealing the contribution of each component to overall model efficacy. In comparison with state-of-the-art deep learning models, our proposed model achieved the highest accuracy and precision, marking a 6% improvement over the second-best model. The results from ablation experiments corroborate the effectiveness of individual module components in enhancing model performance. Our method for diagnosing monkeypox demonstrates improved diagnostic precision and extends the reach of medical services in resource-constrained settings.
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Affiliation(s)
- Jie Deng
- School of Medical College, Jiangsu University, Zhenjiang, China
| | - Jingjie Liu
- Department of Cardiology, First Affiliated Hospital of Dalian Medical University, Dalian, China
| | - Chui Kong
- School of Information Science and Technology, Fudan University, Shanghai, China
| | - Boyang Zang
- School of Clinical Medicine, Tsinghua University, Beijing, China
| | - Yue Hu
- Guang'anmen Hospital, China Academy of Chinese Medical Sciences, Beijing, China
| | - Meiyin Zou
- Department of Infectious Diseases, Affiliated Nantong Hospital 3 of Nantong University, Nantong, Jiangsu, China
- Department of Infectious Diseases, Nantong Third People’s Hospital, Nantong, Jiangsu, China
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10
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Asif S, Zhao M, Li Y, Tang F, Zhu Y. CFI-Net: A Choquet Fuzzy Integral Based Ensemble Network With PSO-Optimized Fuzzy Measures for Diagnosing Multiple Skin Diseases Including Mpox. IEEE J Biomed Health Inform 2024; 28:5573-5586. [PMID: 38857139 DOI: 10.1109/jbhi.2024.3411658] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2024]
Abstract
In the domain of medical diagnostics, precise identification of various skin and oral diseases is vital for effective patient care. In particular, Mpox is a potentially dangerous viral disease with zoonotic origins, capable of human-to-human transmission, underscoring the urgency of precise diagnostic methods for timely intervention. This paper introduces a novel approach named the Choquet Fuzzy Integral-based Ensemble (CFI-Net) for accurate classification of skin diseases, with a specific emphasis on detecting Mpox, foot ulcers, and various mouth and oral diseases. Our methodology begins with Transfer Learning, enhancing the classification capabilities of base classifiers (DenseNet169, MobileNetV1 and DenseNet201) by incorporating additional layers. Subsequently, we aggregate the prediction scores from each base classifier using the Choquet fuzzy integral (CFI) to derive the final predicted labels, thus ensuring dynamic and robust predictions. Fuzzy measures, a crucial component of this fuzzy integral-based ensemble method, are typically determined through manual experimentation in previous approaches. However, in our study, we have tackled the challenge of manual tuning by employing meta-heuristic optimization algorithm to precisely configure the fuzzy measures for optimal performance. A rigorous evaluation is conducted on four publicly available datasets, encompassing two Mpox datasets, a foot ulcer dataset, and a mouth and oral disease dataset. The experiments reveal the remarkable effectiveness of CFI-Net in significantly improving disease classification accuracy. Additionally, we employ Grad-CAM analysis to provide insights into the decision-making processes of our models. Our findings underscore the exceptional performance of CFI-Net, achieving accuracy rates of 98.06% and 94.81% for Mpox detection, 99.06% for foot ulcer detection, and an impressive 99.61% for mouth and oral disease classification. This research not only contributes to the advancement of disease diagnosis but also demonstrates the effectiveness of ensemble learning techniques coupled with fuzzy integral-based fusion in enhancing diagnostic accuracy.
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11
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Das HK. Exploring the dynamics of monkeypox transmission with data-driven methods and a deterministic model. FRONTIERS IN EPIDEMIOLOGY 2024; 4:1334964. [PMID: 38840980 PMCID: PMC11150605 DOI: 10.3389/fepid.2024.1334964] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Accepted: 04/01/2024] [Indexed: 06/07/2024]
Abstract
Introduction Mpox (formerly monkeypox) is an infectious disease that spreads mostly through direct contact with infected animals or people's blood, bodily fluids, or cutaneous or mucosal lesions. In light of the global outbreak that occurred in 2022-2023, in this paper, we analyzed global Mpox univariate time series data and provided a comprehensive analysis of disease outbreaks across the world, including the USA with Brazil and three continents: North America, South America, and Europe. The novelty of this study is that it delved into the Mpox time series data by implementing the data-driven methods and a mathematical model concurrently-an aspect not typically addressed in the existing literature. The study is also important because implementing these models concurrently improved our predictions' reliability for infectious diseases. Methods We proposed a traditional compartmental model and also implemented deep learning models (1D- convolutional neural network (CNN), long-short term memory (LSTM), bidirectional LSTM (BiLSTM), hybrid CNN-LSTM, and CNN-BiLSTM) as well as statistical time series models: autoregressive integrated moving average (ARIMA) and exponential smoothing on the Mpox data. We also employed the least squares method fitting to estimate the essential epidemiological parameters in the proposed deterministic model. Results The primary finding of the deterministic model is that vaccination rates can flatten the curve of infected dynamics and influence the basic reproduction number. Through the numerical simulations, we determined that increased vaccination among the susceptible human population is crucial to control disease transmission. Moreover, in case of an outbreak, our model showed the potential for epidemic control by adjusting the key epidemiological parameters, namely the baseline contact rate and the proportion of contacts within the human population. Next, we analyzed data-driven models that contribute to a comprehensive understanding of disease dynamics in different locations. Additionally, we trained models to provide short-term (eight-week) predictions across various geographical locations, and all eight models produced reliable results. Conclusion This study utilized a comprehensive framework to investigate univariate time series data to understand the dynamics of Mpox transmission. The prediction showed that Mpox is in its die-out situation as of July 29, 2023. Moreover, the deterministic model showed the importance of the Mpox vaccination in mitigating the Mpox transmission and highlighted the significance of effectively adjusting key epidemiological parameters during outbreaks, particularly the contact rate in high-risk groups.
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Affiliation(s)
- Haridas K. Das
- Department of Mathematics, Oklahoma State University, Stillwater, OK, United States
- Department of Mathematics, Dhaka University, Dhaka, Bangladesh
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12
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Yue Y, Jiang M, Zhang X, Xu J, Ye H, Zhang F, Li Z, Li Y. Mpox-AISM: AI-mediated super monitoring for mpox and like-mpox. iScience 2024; 27:109766. [PMID: 38711448 PMCID: PMC11070687 DOI: 10.1016/j.isci.2024.109766] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2023] [Revised: 09/16/2023] [Accepted: 04/15/2024] [Indexed: 05/08/2024] Open
Abstract
Swift and accurate diagnosis for earlier-stage monkeypox (mpox) patients is crucial to avoiding its spread. However, the similarities between common skin disorders and mpox and the need for professional diagnosis unavoidably impaired the diagnosis of earlier-stage mpox patients and contributed to mpox outbreak. To address the challenge, we proposed "Super Monitoring", a real-time visualization technique employing artificial intelligence (AI) and Internet technology to diagnose earlier-stage mpox cheaply, conveniently, and quickly. Concretely, AI-mediated "Super Monitoring" (mpox-AISM) integrates deep learning models, data augmentation, self-supervised learning, and cloud services. According to publicly accessible datasets, mpox-AISM's Precision, Recall, Specificity, and F1-score in diagnosing mpox reach 99.3%, 94.1%, 99.9%, and 96.6%, respectively, and it achieves 94.51% accuracy in diagnosing mpox, six like-mpox skin disorders, and normal skin. With the Internet and communication terminal, mpox-AISM has the potential to perform real-time and accurate diagnosis for earlier-stage mpox in real-world scenarios, thereby preventing mpox outbreak.
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Affiliation(s)
- Yubiao Yue
- School of Biomedical Engineering, Guangzhou Medical University, Guangzhou 511436, China
| | - Minghua Jiang
- Department of science and education, Dermatological department, Foshan Sanshui District People’s Hospital, Foshan 528199, China
| | - Xinyue Zhang
- School of Biomedical Engineering, Guangzhou Medical University, Guangzhou 511436, China
| | - Jialong Xu
- School of Biomedical Engineering, Guangzhou Medical University, Guangzhou 511436, China
| | - Huacong Ye
- School of Biomedical Engineering, Guangzhou Medical University, Guangzhou 511436, China
| | - Fan Zhang
- Department of science and education, Dermatological department, Foshan Sanshui District People’s Hospital, Foshan 528199, China
| | - Zhenzhang Li
- School of Mathematics and Systems Science, Guangdong Polytechnic Normal University, Guangzhou 510665, China
- School of Biomedical Engineering, Guangzhou Medical University, Guangzhou 511436, China
| | - Yang Li
- School of Biomedical Engineering, Guangzhou Medical University, Guangzhou 511436, China
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13
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Tan RKJ, Perera D, Arasaratnam S, Kularathne Y. Adapting an artificial intelligence sexually transmitted diseases symptom checker tool for Mpox detection: the HeHealth experience. Sex Health 2024; 21:SH23197. [PMID: 38743839 DOI: 10.1071/sh23197] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Accepted: 04/23/2024] [Indexed: 05/16/2024]
Abstract
Artificial Intelligence (AI) applications have shown promise in the management of pandemics. In response to the global Monkeypox (Mpox) outbreak, the HeHealth.ai team leveraged an existing tool to screen for sexually transmitted diseases (STD) to develop a digital screening test for symptomatic Mpox using AI. Before the global Mpox outbreak, the team developed a smartphone app (HeHealth) where app users can use a smartphone to photograph their own penises to screen for symptomatic STD. The AI model initially used 5000 cases and a modified convolutional neural network to output prediction scores across visually diagnosable penis pathologies including syphilis, herpes simplex virus, and human papillomavirus. A total of about 22,000 users had downloaded the HeHealth app, and ~21,000 images were analysed using HeHealth AI technology. We then used formative research, stakeholder engagement, rapid consolidation images, a validation study, and implementation of the tool. A total of 1000 Mpox-related images had been used to train the Mpox symptom checker tool. Based on an internal validation, our digital symptom checker tool showed specificity of 87% and sensitivity of 90% for symptomatic Mpox. Several hurdles identified included issues of data privacy and security for app users, initial lack of data to train the AI tool, and the potential generalisability of input data. We offer several suggestions to help others get started on similar projects in emergency situations, including engaging a wide range of stakeholders, having a multidisciplinary team, prioritising pragmatism, as well as the concept that 'big data' in fact is made up of 'small data'.
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Affiliation(s)
- Rayner Kay Jin Tan
- Saw Swee Hock School of Public Health, National University of Singapore and National University Health System, Singapore, Singapore; and HeHealth.ai, Singapore, Singapore
| | - Dilruk Perera
- Saw Swee Hock School of Public Health, National University of Singapore and National University Health System, Singapore, Singapore; and HeHealth.ai, Singapore, Singapore
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14
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Asif S, Zhao M, Li Y, Tang F, Zhu Y. CGO-ensemble: Chaos game optimization algorithm-based fusion of deep neural networks for accurate Mpox detection. Neural Netw 2024; 173:106183. [PMID: 38382397 DOI: 10.1016/j.neunet.2024.106183] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2023] [Revised: 12/19/2023] [Accepted: 02/15/2024] [Indexed: 02/23/2024]
Abstract
The rising global incidence of human Mpox cases necessitates prompt and accurate identification for effective disease control. Previous studies have predominantly delved into traditional ensemble methods for detection, we introduce a novel approach by leveraging a metaheuristic-based ensemble framework. In this research, we present an innovative CGO-Ensemble framework designed to elevate the accuracy of detecting Mpox infection in patients. Initially, we employ five transfer learning base models that integrate feature integration layers and residual blocks. These components play a crucial role in capturing significant features from the skin images, thereby enhancing the models' efficacy. In the next step, we employ a weighted averaging scheme to consolidate predictions generated by distinct models. To achieve the optimal allocation of weights for each base model in the ensemble process, we leverage the Chaos Game Optimization (CGO) algorithm. This strategic weight assignment enhances classification outcomes considerably, surpassing the performance of randomly assigned weights. Implementing this approach yields notably enhanced prediction accuracy compared to using individual models. We evaluate the effectiveness of our proposed approach through comprehensive experiments conducted on two widely recognized benchmark datasets: the Mpox Skin Lesion Dataset (MSLD) and the Mpox Skin Image Dataset (MSID). To gain insights into the decision-making process of the base models, we have performed Gradient Class Activation Mapping (Grad-CAM) analysis. The experimental results showcase the outstanding performance of the CGO-ensemble, achieving an impressive accuracy of 100% on MSLD and 94.16% on MSID. Our approach significantly outperforms other state-of-the-art optimization algorithms, traditional ensemble methods, and existing techniques in the context of Mpox detection on these datasets. These findings underscore the effectiveness and superiority of the CGO-Ensemble in accurately identifying Mpox cases, highlighting its potential in disease detection and classification.
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Affiliation(s)
- Sohaib Asif
- School of Computer Science and Engineering, Central South University, Changsha, China.
| | - Ming Zhao
- School of Computer Science and Engineering, Central South University, Changsha, China.
| | - Yangfan Li
- School of Computer Science and Engineering, Central South University, Changsha, China.
| | - Fengxiao Tang
- School of Computer Science and Engineering, Central South University, Changsha, China.
| | - Yusen Zhu
- School of Mathematics, Hunan University, Changsha, China
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15
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Savaş S. Enhancing Disease Classification with Deep Learning: a Two-Stage Optimization Approach for Monkeypox and Similar Skin Lesion Diseases. JOURNAL OF IMAGING INFORMATICS IN MEDICINE 2024; 37:778-800. [PMID: 38343247 PMCID: PMC11031556 DOI: 10.1007/s10278-023-00941-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Revised: 09/26/2023] [Accepted: 10/17/2023] [Indexed: 04/20/2024]
Abstract
Monkeypox (MPox) is an infectious disease caused by the monkeypox virus, presenting challenges in accurate identification due to its resemblance to other diseases. This study introduces a deep learning-based method to distinguish visually similar diseases, specifically MPox, chickenpox, and measles, addressing the 2022 global MPox outbreak. A two-stage optimization approach was presented in the study. By analyzing pre-trained deep neural networks including 71 models, this study optimizes accuracy through transfer learning, fine-tuning, and ensemble learning techniques. ConvNeXtBase, Large, and XLarge models were identified achieving 97.5% accuracy in the first stage. Afterwards, some selection criteria were followed for the models identified in the first stage for use in ensemble learning technique within the optimization approach. The top-performing ensemble model, EM3 (composed of RegNetX160, ResNetRS101, and ResNet101), attains an AUC of 0.9971 in the second stage. Evaluation on unseen data ensures model robustness and enhances the study's overall validity and reliability. The design and implementation of the study have been optimized to address the limitations identified in the literature. This approach offers a rapid and highly accurate decision support system for timely MPox diagnosis, reducing human error, manual processes, and enhancing clinic efficiency. It aids in early MPox detection, addresses diverse disease challenges, and informs imaging device software development. The study's broad implications support global health efforts and showcase artificial intelligence potential in medical informatics for disease identification and diagnosis.
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Affiliation(s)
- Serkan Savaş
- Department of Computer Engineering, Kırıkkale University, 71450, Kırıkkale, Turkey.
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16
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Jia Q, Xue L, Sui R, Huo J. Modelling the impact of human behavior using a two-layer Watts-Strogatz network for transmission and control of Mpox. BMC Infect Dis 2024; 24:351. [PMID: 38532346 DOI: 10.1186/s12879-024-09239-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Accepted: 03/20/2024] [Indexed: 03/28/2024] Open
Abstract
PURPOSE This study aims to evaluate the effectiveness of mitigation strategies and analyze the impact of human behavior on the transmission of Mpox. The results can provide guidance to public health authorities on comprehensive prevention and control for the new Mpox virus strain in the Democratic Republic of Congo as of December 2023. METHODS We develop a two-layer Watts-Strogatz network model. The basic reproduction number is calculated using the next-generation matrix approach. Markov chain Monte Carlo (MCMC) optimization algorithm is used to fit Mpox cases in Canada into the network model. Numerical simulations are used to assess the impact of mitigation strategies and human behavior on the final epidemic size. RESULTS Our results show that the contact transmission rate of low-risk groups and susceptible humans increases when the contact transmission rate of high-risk groups and susceptible humans is controlled as the Mpox epidemic spreads. The contact transmission rate of high-risk groups after May 18, 2022, is approximately 20% lower than that before May 18, 2022. Our findings indicate a positive correlation between the basic reproduction number and the level of heterogeneity in human contacts, with the basic reproduction number estimated at 2.3475 (95% CI: 0.0749-6.9084). Reducing the average number of sexual contacts to two per week effectively reduces the reproduction number to below one. CONCLUSION We need to pay attention to the re-emergence of the epidemics caused by low-risk groups when an outbreak dominated by high-risk groups is under control. Numerical simulations show that reducing the average number of sexual contacts to two per week is effective in slowing down the rapid spread of the epidemic. Our findings offer guidance for the public health authorities of the Democratic Republic of Congo in developing effective mitigation strategies.
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Affiliation(s)
- Qiaojuan Jia
- College of Mathematical Sciences, Harbin Engineering University, 145 Nantong Street, Harbin, Heilongjiang, 150001, China
| | - Ling Xue
- College of Mathematical Sciences, Harbin Engineering University, 145 Nantong Street, Harbin, Heilongjiang, 150001, China.
| | - Ran Sui
- College of Mathematical Sciences, Harbin Engineering University, 145 Nantong Street, Harbin, Heilongjiang, 150001, China
| | - Junqi Huo
- College of Mathematical Sciences, Harbin Engineering University, 145 Nantong Street, Harbin, Heilongjiang, 150001, China
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17
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Alam FB, Podder P, Mondal MRH. RVCNet: A hybrid deep neural network framework for the diagnosis of lung diseases. PLoS One 2023; 18:e0293125. [PMID: 38153925 PMCID: PMC10754458 DOI: 10.1371/journal.pone.0293125] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2023] [Accepted: 10/06/2023] [Indexed: 12/30/2023] Open
Abstract
Early evaluation and diagnosis can significantly reduce the life-threatening nature of lung diseases. Computer-aided diagnostic systems (CADs) can help radiologists make more precise diagnoses and reduce misinterpretations in lung disease diagnosis. Existing literature indicates that more research is needed to correctly classify lung diseases in the presence of multiple classes for different radiographic imaging datasets. As a result, this paper proposes RVCNet, a hybrid deep neural network framework for predicting lung diseases from an X-ray dataset of multiple classes. This framework is developed based on the ideas of three deep learning techniques: ResNet101V2, VGG19, and a basic CNN model. In the feature extraction phase of this new hybrid architecture, hyperparameter fine-tuning is used. Additional layers, such as batch normalization, dropout, and a few dense layers, are applied in the classification phase. The proposed method is applied to a dataset of COVID-19, non-COVID lung infections, viral pneumonia, and normal patients' X-ray images. The experiments take into account 2262 training and 252 testing images. Results show that with the Nadam optimizer, the proposed algorithm has an overall classification accuracy, AUC, precision, recall, and F1-score of 91.27%, 92.31%, 90.48%, 98.30%, and 94.23%, respectively. Finally, these results are compared with some recent deep-learning models. For this four-class dataset, the proposed RVCNet has a classification accuracy of 91.27%, which is better than ResNet101V2, VGG19, VGG19 over CNN, and other stand-alone models. Finally, the application of the GRAD-CAM approach clearly interprets the classification of images by the RVCNet framework.
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Affiliation(s)
- Fatema Binte Alam
- Institute of Information and Communication Technology, Bangladesh University of Engineering and Technology, Dhaka, Bangladesh
| | - Prajoy Podder
- Institute of Information and Communication Technology, Bangladesh University of Engineering and Technology, Dhaka, Bangladesh
| | - M. Rubaiyat Hossain Mondal
- Institute of Information and Communication Technology, Bangladesh University of Engineering and Technology, Dhaka, Bangladesh
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18
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Bhandari M, Shahi TB, Neupane A. Evaluating Retinal Disease Diagnosis with an Interpretable Lightweight CNN Model Resistant to Adversarial Attacks. J Imaging 2023; 9:219. [PMID: 37888326 PMCID: PMC10607865 DOI: 10.3390/jimaging9100219] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2023] [Revised: 09/29/2023] [Accepted: 10/09/2023] [Indexed: 10/28/2023] Open
Abstract
Optical Coherence Tomography (OCT) is an imperative symptomatic tool empowering the diagnosis of retinal diseases and anomalies. The manual decision towards those anomalies by specialists is the norm, but its labor-intensive nature calls for more proficient strategies. Consequently, the study recommends employing a Convolutional Neural Network (CNN) for the classification of OCT images derived from the OCT dataset into distinct categories, including Choroidal NeoVascularization (CNV), Diabetic Macular Edema (DME), Drusen, and Normal. The average k-fold (k = 10) training accuracy, test accuracy, validation accuracy, training loss, test loss, and validation loss values of the proposed model are 96.33%, 94.29%, 94.12%, 0.1073, 0.2002, and 0.1927, respectively. Fast Gradient Sign Method (FGSM) is employed to introduce non-random noise aligned with the cost function's data gradient, with varying epsilon values scaling the noise, and the model correctly handles all noise levels below 0.1 epsilon. Explainable AI algorithms: Local Interpretable Model-Agnostic Explanations (LIME) and SHapley Additive exPlanations (SHAP) are utilized to provide human interpretable explanations approximating the behaviour of the model within the region of a particular retinal image. Additionally, two supplementary datasets, namely, COVID-19 and Kidney Stone, are assimilated to enhance the model's robustness and versatility, resulting in a level of precision comparable to state-of-the-art methodologies. Incorporating a lightweight CNN model with 983,716 parameters, 2.37×108 floating point operations per second (FLOPs) and leveraging explainable AI strategies, this study contributes to efficient OCT-based diagnosis, underscores its potential in advancing medical diagnostics, and offers assistance in the Internet-of-Medical-Things.
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Affiliation(s)
- Mohan Bhandari
- Department of Science and Technology, Samriddhi College, Bhaktapur 44800, Nepal;
| | - Tej Bahadur Shahi
- School of Engineering and Technology, Central Queensland University, Norman Gardens, Rockhampton, QLD 4701, Australia;
- Central Department of Computer Science and IT, Tribhuvan University, Kathmandu 44600, Nepal
| | - Arjun Neupane
- School of Engineering and Technology, Central Queensland University, Norman Gardens, Rockhampton, QLD 4701, Australia;
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Asif S, Zhao M, Tang F, Zhu Y, Zhao B. Metaheuristics optimization-based ensemble of deep neural networks for Mpox disease detection. Neural Netw 2023; 167:342-359. [PMID: 37673024 DOI: 10.1016/j.neunet.2023.08.035] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Revised: 08/18/2023] [Accepted: 08/20/2023] [Indexed: 09/08/2023]
Abstract
The rising number of cases of human Mpox has emerged as a major global concern due to the daily increase of cases in several countries. The disease presents various skin symptoms in infected individuals, making it crucial to promptly identify and isolate them to prevent widespread community transmission. Rapid determination and isolation of infected individuals are therefore essential to curb the spread of the disease. Most research in the detection of Mpox disease has utilized convolutional neural network (CNN) models and ensemble methods. However, to the best of our knowledge, none have utilized a meta-heuristic-based ensemble approach. To address this gap, we propose a novel metaheuristics optimization-based weighted average ensemble model (MO-WAE) for detecting Mpox disease. We first train three transfer learning (TL)-based CNNs (DenseNet201, MobileNet, and DenseNet169) by adding additional layers to improve their classification strength. Next, we use a weighted average ensemble technique to fuse the predictions from each individual model, and the particle swarm optimization (PSO) algorithm is utilized to assign optimized weights to each model during the ensembling process. By using this approach, we obtain more accurate predictions than individual models. To gain a better understanding of the regions indicating the onset of Mpox, we performed a Gradient Class Activation Mapping (Grad-CAM) analysis to explain our model's predictions. Our proposed MO-WAE ensemble model was evaluated on a publicly available Mpox dataset and achieved an impressive accuracy of 97.78%. This outperforms state-of-the-art (SOTA) methods on the same dataset, thereby providing further evidence of the efficacy of our proposed model.
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Affiliation(s)
- Sohaib Asif
- School of Computer Science and Engineering, Central South University, Changsha, China
| | - Ming Zhao
- School of Computer Science and Engineering, Central South University, Changsha, China.
| | - Fengxiao Tang
- School of Computer Science and Engineering, Central South University, Changsha, China.
| | - Yusen Zhu
- School of Mathematics, Hunan University, Changsha, China
| | - Baokang Zhao
- School of Computer Science, National University of Defense Technology, China
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Dahiya N, Sharma YK, Rani U, Hussain S, Nabilal KV, Mohan A, Nuristani N. Hyper-parameter tuned deep learning approach for effective human monkeypox disease detection. Sci Rep 2023; 13:15930. [PMID: 37741892 PMCID: PMC10517970 DOI: 10.1038/s41598-023-43236-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Accepted: 09/21/2023] [Indexed: 09/25/2023] Open
Abstract
Human monkeypox is a very unusual virus that can devastate society. Early identification and diagnosis are essential to treat and manage an illness effectively. Human monkeypox disease detection using deep learning models has attracted increasing attention recently. The virus that causes monkeypox may be passed to people, making it a zoonotic illness. The latest monkeypox epidemic has hit more than 40 nations. Computer-assisted approaches using Deep Learning techniques for automatically identifying skin lesions have shown to be a viable alternative in light of the fast proliferation and ever-growing problems of supplying PCR (Polymerase Chain Reaction) Testing in places with limited availability. In this research, we introduce a deep learning model for detecting human monkeypoxes that is accurate and resilient by tuning its hyper-parameters. We employed a mixture of convolutional neural networks and transfer learning strategies to extract characteristics from medical photos and properly identify them. We also used hyperparameter optimization strategies to fine-tune the Model and get the best possible results. This paper proposes a Yolov5 model-based method for differentiating between chickenpox and Monkeypox lesions on skin pictures. The Roboflow skin lesion picture dataset was subjected to three different hyperparameter tuning strategies: the SDG optimizer, the Bayesian optimizer, and Learning without Forgetting. The proposed Model had the highest classification accuracy (98.18%) when applied to photos of monkeypox skin lesions. Our findings show that the suggested Model surpasses the current best-in-class models and may be used in clinical settings for actual Human Monkeypox disease detection and diagnosis.
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Affiliation(s)
- Neeraj Dahiya
- Department of Computer Science and Engineering, SRM University Delhi-NCR, Sonipat, Haryana, India
| | - Yogesh Kumar Sharma
- Department of Computer Science and Engineering, Koneru Lakshmaiah Education Foundation, Vaddeswaram, Guntur, Andhra Pradesh, India
| | - Uma Rani
- Department of Computer Science and Engineering, World College of Technology and Management, Gurugram, Haryana, 122413, India
| | - Shekjavid Hussain
- Department of Computer Science and Engineering, Shri Jagdishprasad Jhabarmal Tibrewala University, Jhunjhunu, Rajasthan, India
| | - Khan Vajid Nabilal
- Department of Computer Science and Engineering, Dhole Patil College of Engineering, Wagholi, Pune, Maharashtra, 412207, India
| | - Anand Mohan
- Department of Physics, Kunwar Singh College, Darbhanga, Bihar, India
| | - Nasratullah Nuristani
- Department of Spectrum Management, Afghanistan Telecommunication Regulatory Authority, Kabul, 2496300, Afghanistan.
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21
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Rampogu S. A review on the use of machine learning techniques in monkeypox disease prediction. SCIENCE IN ONE HEALTH 2023; 2:100040. [PMID: 39077048 PMCID: PMC11262284 DOI: 10.1016/j.soh.2023.100040] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/26/2023] [Accepted: 09/18/2023] [Indexed: 07/31/2024]
Abstract
Infectious diseases have posed a global threat recently, progressing from endemic to pandemic. Early detection and finding a better cure are methods for curbing the disease and its transmission. Machine learning (ML) has demonstrated to be an ideal approach for early disease diagnosis. This review highlights the use of ML algorithms for monkeypox (MP). Various models, such as CNN, DL, NLP, Naïve Bayes, GRA-TLA, HMD, ARIMA, SEL, Regression analysis, and Twitter posts were built to extract useful information from the dataset. These findings show that detection, classification, forecasting, and sentiment analysis are primarily analyzed. Furthermore, this review will assist researchers in understanding the latest implementations of ML in MP and further progress in the field to discover potent therapeutics.
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Pal M, Mahal A, Mohapatra RK, Obaidullah AJ, Sahoo RN, Pattnaik G, Pattanaik S, Mishra S, Aljeldah M, Alissa M, Najim MA, Alshengeti A, AlShehail BM, Garout M, Halwani MA, Alshehri AA, Rabaan AA. Deep and Transfer Learning Approaches for Automated Early Detection of Monkeypox (Mpox) Alongside Other Similar Skin Lesions and Their Classification. ACS OMEGA 2023; 8:31747-31757. [PMID: 37692219 PMCID: PMC10483519 DOI: 10.1021/acsomega.3c02784] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2023] [Accepted: 08/09/2023] [Indexed: 09/12/2023]
Abstract
The world faces multiple public health emergencies simultaneously, such as COVID-19 and Monkeypox (mpox). mpox, from being a neglected disease, has emerged as a global threat that has spread to more than 100 nonendemic countries, even as COVID-19 has been spreading for more than 3 years now. The general mpox symptoms are similar to chickenpox and measles, thus leading to a possible misdiagnosis. This study aimed at facilitating a rapid and high-brevity mpox diagnosis. Reportedly, mpox circulates among particular groups, such as sexually promiscuous gay and bisexuals. Hence, selectively vaccinating, isolating, and treating them seems difficult due to the associated social stigma. Deep learning (DL) has great promise in image-based diagnosis and could help in error-free bulk diagnosis. The novelty proposed, the system adopted, and the methods and approaches are discussed in the article. The present work proposes the use of DL models for automated early mpox diagnosis. The performances of the proposed algorithms were evaluated using the data set available in public domain. The data set adopted for the study was meant for both training and testing, the details of which are elaborated. The performances of CNN, VGG19, ResNet 50, Inception v3, and Autoencoder algorithms were compared. It was concluded that CNN, VGG19, and Inception v3 could help in early detection of mpox skin lesions, and Inception v3 returned the best (96.56%) classification accuracy.
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Affiliation(s)
- Madhumita Pal
- Department
of Electrical Engineering, Government College
of Engineering, Keonjhar, Odisha 758 002, India
| | - Ahmed Mahal
- Department
of Medical Biochemical Analysis, College of Health Technology, Cihan University−Erbil, Erbil, Kurdistan Region, Iraq
| | - Ranjan K. Mohapatra
- Department
of Chemistry, Government College of Engineering, Keonjhar, Odisha 758 002, India
| | - Ahmad J. Obaidullah
- Department
of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P.O. Box 2457, Riyadh 11451, Saudi Arabia
| | - Rudra Narayan Sahoo
- School
of Pharmaceutical Sciences, Siksha ‘O’
Anusandhan (Deemed to be University), Kalinga Nagar, Bhubaneswar, Odisha 751 003, India
| | - Gurudutta Pattnaik
- School of
Pharmacy and Life Sciences, Centurion University
of Technology and Management, Khordha , Odisha 752 050, India
| | - Sovan Pattanaik
- School
of Pharmaceutical Sciences, Siksha ‘O’
Anusandhan (Deemed to be University), Kalinga Nagar, Bhubaneswar, Odisha 751 003, India
| | - Snehasish Mishra
- School
of Biotechnology, KIIT Deemed-to-be-University, Campus-11, Bhubaneswar, Odisha 751
024, India
| | - Mohammed Aljeldah
- Department
of Clinical Laboratory Sciences, College of Applied Medical Sciences, University of Hafr Al Batin, Hafr Al Batin 39831, Saudi Arabia
| | - Mohammed Alissa
- Department
of Medical Laboratory Sciences, College of Applied Medical Sciences, Prince Sattam bin Abdulaziz University, Al-Kharj 11942, Saudi Arabia
| | - Mustafa A. Najim
- Department
of Medical Laboratories Technology, College of Applied Medical Sciences, Taibah University, Madinah 41411, Saudi Arabia
| | - Amer Alshengeti
- Department
of Pediatrics, College of Medicine, Taibah
University, Al-Madinah 41491, Saudi Arabia
- Department
of Infection prevention and control, Prince
Mohammad Bin Abdulaziz Hospital, National Guard Health Affairs, Al-Madinah 41491, Saudi Arabia
| | - Bashayer M. AlShehail
- Pharmacy
Practice Department, College of Clinical Pharmacy, Imam Abdulrahman Bin Faisal University, Dammam 31441, Saudi Arabia
| | - Mohammed Garout
- Department
of Community Medicine and Health Care for Pilgrims, Faculty of Medicine, Umm Al-Qura University, Makkah 21955, Saudi Arabia
| | - Muhammad A. Halwani
- Department
of Medical Microbiology, Faculty of Medicine, Al Baha University, Al Baha 4781, Saudi Arabia
| | - Ahmad A. Alshehri
- Department
of Clinical Laboratory Sciences, College of Applied Medical Sciences, Najran University, Najran 61441, Saudi Arabia
| | - Ali A. Rabaan
- Molecular
Diagnostic Laboratory, Johns Hopkins Aramco
Healthcare, Dhahran 31311, Saudi Arabia
- College
of Medicine, Alfaisal University, Riyadh 11533, Saudi Arabia
- Department
of Public Health and Nutrition, The University
of Haripur, Haripur 22610, Pakistan
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23
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Eliwa EHI, El Koshiry AM, Abd El-Hafeez T, Farghaly HM. Utilizing convolutional neural networks to classify monkeypox skin lesions. Sci Rep 2023; 13:14495. [PMID: 37661211 PMCID: PMC10475460 DOI: 10.1038/s41598-023-41545-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Accepted: 08/28/2023] [Indexed: 09/05/2023] Open
Abstract
Monkeypox is a rare viral disease that can cause severe illness in humans, presenting with skin lesions and rashes. However, accurately diagnosing monkeypox based on visual inspection of the lesions can be challenging and time-consuming, especially in resource-limited settings where laboratory tests may not be available. In recent years, deep learning methods, particularly Convolutional Neural Networks (CNNs), have shown great potential in image recognition and classification tasks. To this end, this study proposes an approach using CNNs to classify monkeypox skin lesions. Additionally, the study optimized the CNN model using the Grey Wolf Optimizer (GWO) algorithm, resulting in a significant improvement in accuracy, precision, recall, F1-score, and AUC compared to the non-optimized model. The GWO optimization strategy can enhance the performance of CNN models on similar tasks. The optimized model achieved an impressive accuracy of 95.3%, indicating that the GWO optimizer has improved the model's ability to discriminate between positive and negative classes. The proposed approach has several potential benefits for improving the accuracy and efficiency of monkeypox diagnosis and surveillance. It could enable faster and more accurate diagnosis of monkeypox skin lesions, leading to earlier detection and better patient outcomes. Furthermore, the approach could have crucial public health implications for controlling and preventing monkeypox outbreaks. Overall, this study offers a novel and highly effective approach for diagnosing monkeypox, which could have significant real-world applications.
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Affiliation(s)
- Entesar Hamed I Eliwa
- Department of Mathematics and Statistics, College of Science, King Faisal University, P.O. Box: 400, 31982, Al-Ahsa, Saudi Arabia.
- Department of Computer Science, Faculty of Science, Minia University, Minya, Egypt.
| | - Amr Mohamed El Koshiry
- Department of Curricula and Teaching Methods, College of Education, King Faisal University, P.O. Box: 400, 31982, Al-Ahsa, Saudi Arabia.
- Faculty of Specific Education, Minia University, Minya, Egypt.
| | - Tarek Abd El-Hafeez
- Department of Computer Science, Faculty of Science, Minia University, Minya, Egypt.
- Computer Science Unit, Deraya University, New Minya, Egypt.
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24
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Hossen MR, Alfaz N, Sami A, Tanim SA, Bin Sarwar T, Islam MK. An EfficientNet to Classify Monkeypox-Comparable Skin Lesions Using Transfer Learning. 2023 IEEE INTERNATIONAL CONFERENCE ON OMNI-LAYER INTELLIGENT SYSTEMS (COINS) 2023. [DOI: 10.1109/coins57856.2023.10189311] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
Affiliation(s)
- Md. Rifat Hossen
- American International University-Bangladesh (AIUB),Department of Computer Science and Engineering,Dhaka,Bangladesh
| | - Nazia Alfaz
- American International University-Bangladesh (AIUB),Department of Computer Science,Dhaka,Bangladesh
| | - Adnan Sami
- American International University-Bangladesh (AIUB),Department of Computer Science and Engineering,Dhaka,Bangladesh
| | - Sharia Arfin Tanim
- American International University-Bangladesh (AIUB),Department of Computer Science and Engineering,Dhaka,Bangladesh
| | - Talha Bin Sarwar
- College of Computing and Applied Science, Universiti Malaysia Pahang,Faculty of Computing,Pekan,Malaysia
| | - Md. Kamrul Islam
- American International University-Bangladesh (AIUB),Department of Computer Science and Engineering,Dhaka,Bangladesh
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25
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Farzipour A, Elmi R, Nasiri H. Detection of Monkeypox Cases Based on Symptoms Using XGBoost and Shapley Additive Explanations Methods. Diagnostics (Basel) 2023; 13:2391. [PMID: 37510135 PMCID: PMC10378557 DOI: 10.3390/diagnostics13142391] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2023] [Revised: 07/03/2023] [Accepted: 07/11/2023] [Indexed: 07/30/2023] Open
Abstract
The monkeypox virus poses a novel public health risk that might quickly escalate into a worldwide epidemic. Machine learning (ML) has recently shown much promise in diagnosing diseases like cancer, finding tumor cells, and finding COVID-19 patients. In this study, we have created a dataset based on the data both collected and published by Global Health and used by the World Health Organization (WHO). Being entirely textual, this dataset shows the relationship between the symptoms and the monkeypox disease. The data have been analyzed, using gradient boosting methods such as Extreme Gradient Boosting (XGBoost), CatBoost, and LightGBM along with other standard machine learning methods such as Support Vector Machine (SVM) and Random Forest. All these methods have been compared. The research aims to provide an ML model based on symptoms for the diagnosis of monkeypox. Previous studies have only examined disease diagnosis using images. The best performance has belonged to XGBoost, with an accuracy of 1.0 in reviews. To check the model's flexibility, k-fold cross-validation is used, reaching an average accuracy of 0.9 in 5 different splits of the test set. In addition, Shapley Additive Explanations (SHAP) helps in examining and explaining the output of the XGBoost model.
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Affiliation(s)
- Alireza Farzipour
- Department of Computer Science, Semnan University, Semnan 35131-19111, Iran
| | - Roya Elmi
- Farzanegan Campus, Semnan University, Semnan 35197-34851, Iran
| | - Hamid Nasiri
- Department of Computer Engineering, Amirkabir University of Technology (Tehran Polytechnic), Tehran 15916-34311, Iran
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26
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Alharbi AH, Towfek SK, Abdelhamid AA, Ibrahim A, Eid MM, Khafaga DS, Khodadadi N, Abualigah L, Saber M. Diagnosis of Monkeypox Disease Using Transfer Learning and Binary Advanced Dipper Throated Optimization Algorithm. Biomimetics (Basel) 2023; 8:313. [PMID: 37504202 PMCID: PMC10807651 DOI: 10.3390/biomimetics8030313] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2023] [Revised: 07/03/2023] [Accepted: 07/12/2023] [Indexed: 07/29/2023] Open
Abstract
The virus that causes monkeypox has been observed in Africa for several years, and it has been linked to the development of skin lesions. Public panic and anxiety have resulted from the deadly repercussions of virus infections following the COVID-19 pandemic. Rapid detection approaches are crucial since COVID-19 has reached a pandemic level. This study's overarching goal is to use metaheuristic optimization to boost the performance of feature selection and classification methods to identify skin lesions as indicators of monkeypox in the event of a pandemic. Deep learning and transfer learning approaches are used to extract the necessary features. The GoogLeNet network is the deep learning framework used for feature extraction. In addition, a binary implementation of the dipper throated optimization (DTO) algorithm is used for feature selection. The decision tree classifier is then used to label the selected set of features. The decision tree classifier is optimized using the continuous version of the DTO algorithm to improve the classification accuracy. Various evaluation methods are used to compare and contrast the proposed approach and the other competing methods using the following metrics: accuracy, sensitivity, specificity, p-Value, N-Value, and F1-score. Through feature selection and a decision tree classifier, the following results are achieved using the proposed approach; F1-score of 0.92, sensitivity of 0.95, specificity of 0.61, p-Value of 0.89, and N-Value of 0.79. The overall accuracy of the proposed methodology after optimizing the parameters of the decision tree classifier is 94.35%. Furthermore, the analysis of variation (ANOVA) and Wilcoxon signed rank test have been applied to the results to investigate the statistical distinction between the proposed methodology and the alternatives. This comparison verified the uniqueness and importance of the proposed approach to Monkeypox case detection.
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Affiliation(s)
- Amal H. Alharbi
- Department of Computer Sciences, College of Computer and Information Sciences, Princess Nourah bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia
| | - S. K. Towfek
- Computer Science and Intelligent Systems Research Center, Blacksburg, VA 24060, USA
- Department of Communications and Electronics, Delta Higher Institute of Engineering and Technology, Mansoura 35111, Egypt
| | - Abdelaziz A. Abdelhamid
- Department of Computer Science, College of Computing and Information Technology, Shaqra University, Shaqra 11961, Saudi Arabia
- Department of Computer Science, Faculty of Computer and Information Sciences, Ain Shams University, Cairo 11566, Egypt
| | - Abdelhameed Ibrahim
- Computer Engineering and Control Systems Department, Faculty of Engineering, Mansoura University, Mansoura 35516, Egypt
| | - Marwa M. Eid
- Faculty of Artificial Intelligence, Delta University for Science and Technology, Mansoura P.O. Box 11152, Egypt
| | - Doaa Sami Khafaga
- Department of Computer Sciences, College of Computer and Information Sciences, Princess Nourah bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia
| | - Nima Khodadadi
- Department of Civil and Architectural Engineering, University of Miami, Coral Gables, FL 33146, USA
| | - Laith Abualigah
- Computer Science Department, Prince Hussein Bin Abdullah Faculty for Information Technology, Al al-Bayt University, Mafraq 25113, Jordan
- Department of Electrical and Computer Engineering, Lebanese American University, Byblos 13-5053, Lebanon
- Hourani Center for Applied Scientific Research, Al-Ahliyya Amman University, Amman 19328, Jordan
- MEU Research Unit, Middle East University, Amman 11831, Jordan
- Applied Science Research Center, Applied Science Private University, Amman 11931, Jordan
- School of Computer Sciences, Universiti Sains Malaysia, Gelugor 11800, Malaysia
- School of Engineering and Technology, Sunway University Malaysia, Petaling Jaya 27500, Malaysia
| | - Mohamed Saber
- Electronics and Communications Engineering Department, Faculty of Engineering, Delta University for Science and Technology, Mansoura P.O. Box 11152, Egypt
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27
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Sorayaie Azar A, Naemi A, Babaei Rikan S, Bagherzadeh Mohasefi J, Pirnejad H, Wiil UK. Monkeypox detection using deep neural networks. BMC Infect Dis 2023; 23:438. [PMID: 37370031 DOI: 10.1186/s12879-023-08408-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Accepted: 06/20/2023] [Indexed: 06/29/2023] Open
Abstract
BACKGROUND In May 2022, the World Health Organization (WHO) European Region announced an atypical Monkeypox epidemic in response to reports of numerous cases in some member countries unrelated to those where the illness is endemic. This issue has raised concerns about the widespread nature of this disease around the world. The experience with Coronavirus Disease 2019 (COVID-19) has increased awareness about pandemics among researchers and health authorities. METHODS Deep Neural Networks (DNNs) have shown promising performance in detecting COVID-19 and predicting its outcomes. As a result, researchers have begun applying similar methods to detect Monkeypox disease. In this study, we utilize a dataset comprising skin images of three diseases: Monkeypox, Chickenpox, Measles, and Normal cases. We develop seven DNN models to identify Monkeypox from these images. Two scenarios of including two classes and four classes are implemented. RESULTS The results show that our proposed DenseNet201-based architecture has the best performance, with Accuracy = 97.63%, F1-Score = 90.51%, and Area Under Curve (AUC) = 94.27% in two-class scenario; and Accuracy = 95.18%, F1-Score = 89.61%, AUC = 92.06% for four-class scenario. Comparing our study with previous studies with similar scenarios, shows that our proposed model demonstrates superior performance, particularly in terms of the F1-Score metric. For the sake of transparency and explainability, Local Interpretable Model-Agnostic Explanations (LIME) and Gradient-weighted Class Activation Mapping (Grad-Cam) were developed to interpret the results. These techniques aim to provide insights into the decision-making process, thereby increasing the trust of clinicians. CONCLUSION The DenseNet201 model outperforms the other models in terms of the confusion metrics, regardless of the scenario. One significant accomplishment of this study is the utilization of LIME and Grad-Cam to identify the affected areas and assess their significance in diagnosing diseases based on skin images. By incorporating these techniques, we enhance our understanding of the infected regions and their relevance in distinguishing Monkeypox from other similar diseases. Our proposed model can serve as a valuable auxiliary tool for diagnosing Monkeypox and distinguishing it from other related conditions.
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Affiliation(s)
| | - Amin Naemi
- Center for Health Informatics and Technology, The Maersk Mc-Kinney Moller Institute, University of Southern Denmark, Odense, Denmark
| | | | | | - Habibollah Pirnejad
- Patient Safety Research Center, Clinical Research Institute, Urmia University of Medical Sciences, Urmia, Iran
- Erasmus School of Health Policy & Management (ESHPM), Erasmus University Rotterdam, Rotterdam, The Netherlands
| | - Uffe Kock Wiil
- Center for Health Informatics and Technology, The Maersk Mc-Kinney Moller Institute, University of Southern Denmark, Odense, Denmark
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28
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ALAKUŞ TB. Prediction of Monkeypox on the Skin Lesion with the Siamese Deep Learning Model. BALKAN JOURNAL OF ELECTRICAL AND COMPUTER ENGINEERING 2023; 11:225-231. [DOI: 10.17694/bajece.1255798] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
Abstract
One of the viral diseases that started to cause concern in various parts of the world after the COVID-19 pandemic is the monkeypox virus, which has recently emerged. The virus, which was known in previous years and mostly seen in the Western and Central parts of the African continent, has recently begun to affect different human populations in different ways. Monkeypox is transmitted to humans from an animal infected with the virus or from another human being infected with monkeypox. Among the most basic symptoms are high fever, back and muscle aches, chills, and blisters on the skin. These blisters seen on the skin are sometimes confused with chickenpox and measles, and this causes the diagnosis and, accordingly, the treatment process to be wrong. Therefore, the need for computer-aided systems has increased and the need for more robust and reliable approaches has arisen. In this study, using the deep learning model, the distinction of the blisters seen in the body was made and it was decided whether the disease was monkeypox or another disease (chickenpox and measles). The study consisted of three stages. In the first stage, data were obtained and images of both chickenpox and other diseases were used. In the second stage, the Siamese deep learning model was used, and data were classified. In the last stage, the performance of the classifier was evaluated and accordingly accuracy, precision, recall, F1-score, and confusion matrix were used. At the end of the study, an accuracy score of 91.09% was obtained. This result showed that the developed deep learning-based model can be used in this field.
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29
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Nayak T, Chadaga K, Sampathila N, Mayrose H, Gokulkrishnan N, Bairy G M, Prabhu S, S SK, Umakanth S. Deep learning based detection of monkeypox virus using skin lesion images. MEDICINE IN NOVEL TECHNOLOGY AND DEVICES 2023; 18:100243. [PMID: 37293134 PMCID: PMC10236906 DOI: 10.1016/j.medntd.2023.100243] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2023] [Revised: 05/25/2023] [Accepted: 05/26/2023] [Indexed: 06/10/2023] Open
Abstract
As we set into the second half of 2022, the world is still recovering from the two-year COVID-19 pandemic. However, over the past three months, the outbreak of the Monkeypox Virus (MPV) has led to fifty-two thousand confirmed cases and over one hundred deaths. This caused the World Health Organisation to declare the outbreak a Public Health Emergency of International Concern (PHEIC). If this outbreak worsens, we could be looking at the Monkeypox virus causing the next global pandemic. As Monkeypox affects the human skin, the symptoms can be captured with regular imaging. Large samples of these images can be used as a training dataset for machine learning-based detection tools. Using a regular camera to capture the skin image of the infected person and running it against computer vision models is beneficial. In this research, we use deep learning to diagnose monkeypox from skin lesion images. Using a publicly available dataset, we tested the dataset on five pre-trained deep neural networks: GoogLeNet, Places365-GoogLeNet, SqueezeNet, AlexNet and ResNet-18. Hyperparameter was done to choose the best parameters. Performance metrics such as accuracy, precision, recall, f1-score and AUC were considered. Among the above models, ResNet18 was able to obtain the highest accuracy of 99.49%. The modified models obtained validation accuracies above 95%. The results prove that deep learning models such as the proposed model based on ResNet-18 can be deployed and can be crucial in battling the monkeypox virus. Since the used networks are optimized for efficiency, they can be used on performance limited devices such as smartphones with cameras. The addition of explainable artificial intelligence techniques LIME and GradCAM enables visual interpretation of the prediction made, helping health professionals using the model.
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Affiliation(s)
- Tushar Nayak
- Department of Biomedical Engineering, Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal, Karnataka, 576104, India
| | - Krishnaraj Chadaga
- Department of Computer Science and Engineering, Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal, Karnataka, 576104, India
| | - Niranjana Sampathila
- Department of Biomedical Engineering, Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal, Karnataka, 576104, India
| | - Hilda Mayrose
- Department of Biomedical Engineering, Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal, Karnataka, 576104, India
| | - Nitila Gokulkrishnan
- Department of Biomedical Engineering, Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal, Karnataka, 576104, India
| | - Muralidhar Bairy G
- Department of Biomedical Engineering, Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal, Karnataka, 576104, India
| | - Srikanth Prabhu
- Department of Computer Science and Engineering, Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal, Karnataka, 576104, India
| | - Swathi K S
- Prasanna School of Public Health, Manipal Academy of Higher Education, Manipal, Karnataka, 576104, India
| | - Shashikiran Umakanth
- Department of Medicine, Dr. T.M.A. Pai Hospital, Manipal Academy of Higher Education, Udupi, Karnataka, 576101, India
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30
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Uysal F. Detection of Monkeypox Disease from Human Skin Images with a Hybrid Deep Learning Model. Diagnostics (Basel) 2023; 13:1772. [PMID: 37238256 PMCID: PMC10217161 DOI: 10.3390/diagnostics13101772] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2023] [Revised: 05/05/2023] [Accepted: 05/16/2023] [Indexed: 05/28/2023] Open
Abstract
Monkeypox, a virus transmitted from animals to humans, is a DNA virus with two distinct genetic lineages in central and eastern Africa. In addition to zootonic transmission through direct contact with the body fluids and blood of infected animals, monkeypox can also be transmitted from person to person through skin lesions and respiratory secretions of an infected person. Various lesions occur on the skin of infected individuals. This study has developed a hybrid artificial intelligence system to detect monkeypox in skin images. An open source image dataset was used for skin images. This dataset has a multi-class structure consisting of chickenpox, measles, monkeypox and normal classes. The data distribution of the classes in the original dataset is unbalanced. Various data augmentation and data preprocessing operations were applied to overcome this imbalance. After these operations, CSPDarkNet, InceptionV4, MnasNet, MobileNetV3, RepVGG, SE-ResNet and Xception, which are state-of-the-art deep learning models, were used for monkeypox detection. In order to improve the classification results obtained in these models, a unique hybrid deep learning model specific to this study was created by using the two highest-performing deep learning models and the long short-term memory (LSTM) model together. In this hybrid artificial intelligence system developed and proposed for monkeypox detection, test accuracy was 87% and Cohen's kappa score was 0.8222.
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Affiliation(s)
- Fatih Uysal
- Department of Electrical and Electronics Engineering, Faculty of Engineering and Architecture, Kafkas University, Kars TR 36100, Turkey
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31
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Almufareh MF, Tehsin S, Humayun M, Kausar S. A Transfer Learning Approach for Clinical Detection Support of Monkeypox Skin Lesions. Diagnostics (Basel) 2023; 13:diagnostics13081503. [PMID: 37189603 DOI: 10.3390/diagnostics13081503] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2023] [Revised: 04/13/2023] [Accepted: 04/18/2023] [Indexed: 05/17/2023] Open
Abstract
Monkeypox (MPX) is a disease caused by monkeypox virus (MPXV). It is a contagious disease and has associated symptoms of skin lesions, rashes, fever, and respiratory distress lymph swelling along with numerous neurological distresses. This can be a deadly disease, and the latest outbreak of it has shown its spread to Europe, Australia, the United States, and Africa. Typically, diagnosis of MPX is performed through PCR, by taking a sample of the skin lesion. This procedure is risky for medical staff, as during sample collection, transmission and testing, they can be exposed to MPXV, and this infectious disease can be transferred to medical staff. In the current era, cutting-edge technologies such as IoT and artificial intelligence (AI) have made the diagnostics process smart and secure. IoT devices such as wearables and sensors permit seamless data collection while AI techniques utilize the data in disease diagnosis. Keeping in view the importance of these cutting-edge technologies, this paper presents a non-invasive, non-contact, computer-vision-based method for diagnosis of MPX by analyzing skin lesion images that are more smart and secure compared to traditional methods of diagnosis. The proposed methodology employs deep learning techniques to classify skin lesions as MPXV positive or not. Two datasets, the Kaggle Monkeypox Skin Lesion Dataset (MSLD) and the Monkeypox Skin Image Dataset (MSID), are used for evaluating the proposed methodology. The results on multiple deep learning models were evaluated using sensitivity, specificity and balanced accuracy. The proposed method has yielded highly promising results, demonstrating its potential for wide-scale deployment in detecting monkeypox. This smart and cost-effective solution can be effectively utilized in underprivileged areas where laboratory infrastructure may be lacking.
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Affiliation(s)
- Maram Fahaad Almufareh
- Department of Information Systems, College of Computer and Information Sciences, Jouf University, Sakakah 72388, Saudi Arabia
| | - Samabia Tehsin
- Department of Computer Science, Bahria University, Islamabad 44220, Pakistan
| | - Mamoona Humayun
- Department of Information Systems, College of Computer and Information Sciences, Jouf University, Sakakah 72388, Saudi Arabia
| | - Sumaira Kausar
- Department of Computer Science, Bahria University, Islamabad 44220, Pakistan
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32
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Gupta A, Bhagat M, Jain V. Blockchain-enabled healthcare monitoring system for early Monkeypox detection. THE JOURNAL OF SUPERCOMPUTING 2023; 79:1-25. [PMID: 37359326 PMCID: PMC10118230 DOI: 10.1007/s11227-023-05288-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 04/10/2023] [Indexed: 06/01/2023]
Abstract
The recent emergence of monkeypox poses a life-threatening challenge to humans and has become one of the global health concerns after COVID-19. Currently, machine learning-based smart healthcare monitoring systems have demonstrated significant potential in image-based diagnosis including brain tumor identification and lung cancer diagnosis. In a similar fashion, the applications of machine learning can be utilized for the early identification of monkeypox cases. However, sharing critical health information with various actors such as patients, doctors, and other healthcare professionals in a secure manner remains a research challenge. Motivated by this fact, our paper presents a blockchain-enabled conceptual framework for the early detection and classification of monkeypox using transfer learning. The proposed framework is experimentally demonstrated in Python 3.9 using a monkeypox dataset of 1905 images obtained from the GitHub repository. To validate the effectiveness of the proposed model, various performance estimators, namely accuracy, recall, precision, and F1-score, are employed. The performance of different transfer learning models, namely Xception, VGG19, and VGG16, is compared against the presented methodology. Based on the comparison, it is evident that the proposed methodology effectively detects and classifies the monkeypox disease with a classification accuracy of 98.80%. In future, multiple skin diseases such as measles and chickenpox can be diagnosed using the proposed model on the skin lesion datasets.
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Affiliation(s)
| | | | - Vibha Jain
- Manipal University Jaipur, Jaipur, India
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33
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Velu M, Dhanaraj RK, Balusamy B, Kadry S, Yu Y, Nadeem A, Rauf HT. Human Pathogenic Monkeypox Disease Recognition Using Q-Learning Approach. Diagnostics (Basel) 2023; 13:diagnostics13081491. [PMID: 37189591 DOI: 10.3390/diagnostics13081491] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2023] [Revised: 03/15/2023] [Accepted: 04/12/2023] [Indexed: 05/17/2023] Open
Abstract
While the world is working quietly to repair the damage caused by COVID-19's widespread transmission, the monkeypox virus threatens to become a global pandemic. There are several nations that report new monkeypox cases daily, despite the virus being less deadly and contagious than COVID-19. Monkeypox disease may be detected using artificial intelligence techniques. This paper suggests two strategies for improving monkeypox image classification precision. Based on reinforcement learning and parameter optimization for multi-layer neural networks, the suggested approaches are based on feature extraction and classification: the Q-learning algorithm determines the rate at which an act occurs in a particular state; Malneural networks are binary hybrid algorithms that improve the parameters of neural networks. The algorithms are evaluated using an openly available dataset. In order to analyze the proposed optimization feature selection for monkeypox classification, interpretation criteria were utilized. In order to evaluate the efficiency, significance, and robustness of the suggested algorithms, a series of numerical tests were conducted. There were 95% precision, 95% recall, and 96% f1 scores for monkeypox disease. As compared to traditional learning methods, this method has a higher accuracy value. The overall macro average was around 0.95, and the overall weighted average was around 0.96. When compared to the benchmark algorithms, DDQN, Policy Gradient, and Actor-Critic, the Malneural network had the highest accuracy (around 0.985). In comparison with traditional methods, the proposed methods were found to be more effective. Clinicians can use this proposal to treat monkeypox patients and administration agencies can use it to observe the origin and current status of the disease.
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Affiliation(s)
- Malathi Velu
- School of Computer Science and Engineering, Panimalar Engineering College, Poonamallee, Chennai 600123, India
| | - Rajesh Kumar Dhanaraj
- School of Computing Science and Engineering, Galgotias University, Greater Noida 203201, India
| | - Balamurugan Balusamy
- Associate Dean-Student Engagement, Shiv Nadar Institution of Eminence, Delhi-National Capital Region (NCR), Gautam Buddha Nagar 201314, India
| | - Seifedine Kadry
- Department of Applied Data Science, Noroff University College, 4612 Kristiansand, Norway
- Artificial Intelligence Research Center (AIRC), Ajman University, Ajman P.O. Box 346, United Arab Emirates
- Department of Electrical and Computer Engineering, Lebanese American University, Byblos 13-5053, Lebanon
| | - Yang Yu
- Centre for Infrastructure Engineering and Safety (CIES), The University of New South Wales, Sydney, NSW 2052, Australia
| | - Ahmed Nadeem
- Department of Pharmacology and Toxicology, College of Pharmacy, King Saud University, P.O. Box 2455, Riyadh 11451, Saudi Arabia
| | - Hafiz Tayyab Rauf
- Centre for Smart Systems, A.I. and Cybersecurity, Staffordshire University, Stoke-on-Trent ST4 2DE, UK
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Ahsan MM, Uddin MR, Ali MS, Islam MK, Farjana M, Sakib AN, Momin KA, Luna SA. Deep transfer learning approaches for Monkeypox disease diagnosis. EXPERT SYSTEMS WITH APPLICATIONS 2023; 216:119483. [PMID: 36624785 PMCID: PMC9814470 DOI: 10.1016/j.eswa.2022.119483] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2022] [Revised: 12/24/2022] [Accepted: 12/27/2022] [Indexed: 06/01/2023]
Abstract
Monkeypox has become a significant global challenge as the number of cases increases daily. Those infected with the disease often display various skin symptoms and can spread the infection through contamination. Recently, Machine Learning (ML) has shown potential in image-based diagnoses, such as detecting cancer, identifying tumor cells, and identifying coronavirus disease (COVID)-19 patients. Thus, ML could potentially be used to diagnose Monkeypox as well. In this study, we developed a Monkeypox diagnosis model using Generalization and Regularization-based Transfer Learning approaches (GRA-TLA) for binary and multiclass classification. We tested our proposed approach on ten different convolutional Neural Network (CNN) models in three separate studies. The preliminary computational results showed that our proposed approach, combined with Extreme Inception (Xception), was able to distinguish between individuals with and without Monkeypox with an accuracy ranging from 77% to 88% in Studies One and Two, while Residual Network (ResNet)-101 had the best performance for multiclass classification in Study Three, with an accuracy ranging from 84% to 99%. In addition, we found that our proposed approach was computationally efficient compared to existing TL approaches in terms of the number of parameters (NP) and Floating-Point Operations per Second (FLOPs) required. We also used Local Interpretable Model-Agnostic Explanations (LIME) to explain our model's predictions and feature extractions, providing a deeper understanding of the specific features that may indicate the onset of Monkeypox.
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Affiliation(s)
- Md Manjurul Ahsan
- Industrial and Systems Engineering, University of Oklahoma, Norman, OK 73019, USA
| | - Muhammad Ramiz Uddin
- Department of Chemistry and Biochemistry, University of Oklahoma, Norman, OK, 73019, USA
| | - Md Shahin Ali
- Department of Biomedical Engineering, Islamic University, Kushtia 7003, Bangladesh
| | - Md Khairul Islam
- Department of Biomedical Engineering, Islamic University, Kushtia 7003, Bangladesh
| | - Mithila Farjana
- Department of Chemistry and Biochemistry, University of Oklahoma, Norman, OK, 73019, USA
| | - Ahmed Nazmus Sakib
- Department of Aerospace and Mechanical Engineering, University of Oklahoma, Norman, OK, 73019, USA
| | - Khondhaker Al Momin
- Department of Civil Engineering, Daffodil International University, Dhaka, 1341, Bangladesh
| | - Shahana Akter Luna
- Medicine & Surgery, Dhaka Medical College & Hospital, Dhaka, 1000, Bangladesh
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Vega C, Schneider R, Satagopam V. Analysis: Flawed Datasets of Monkeypox Skin Images. J Med Syst 2023; 47:37. [PMID: 36933065 PMCID: PMC10024024 DOI: 10.1007/s10916-023-01928-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2022] [Accepted: 02/26/2023] [Indexed: 03/19/2023]
Abstract
The self-proclaimed first publicly available dataset of Monkeypox skin images consists of medically irrelevant images extracted from Google and photography repositories through a process denominated web-scrapping. Yet, this did not stop other researchers from employing it to build Machine Learning (ML) solutions aimed at computer-aided diagnosis of Monkeypox and other viral infections presenting skin lesions. Neither did it stop the reviewers or editors from publishing these subsequent works in peer-reviewed journals. Several of these works claimed extraordinary performance in the classification of Monkeypox, Chickenpox and Measles, employing ML and the aforementioned dataset. In this work, we analyse the initiator work that has catalysed the development of several ML solutions, and whose popularity is continuing to grow. Further, we provide a rebuttal experiment that showcases the risks of such methodologies, proving that the ML solutions do not necessarily obtain their performance from the features relevant to the diseases at issue.
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Affiliation(s)
- Carlos Vega
- Bioinformatics Core, University of Luxembourg, Luxembourg Centre for Systems Biomedicine, Av. du Swing 6, Belvaux, 4367, Luxembourg.
| | - Reinhard Schneider
- Bioinformatics Core, University of Luxembourg, Luxembourg Centre for Systems Biomedicine, Av. du Swing 6, Belvaux, 4367, Luxembourg
| | - Venkata Satagopam
- Bioinformatics Core, University of Luxembourg, Luxembourg Centre for Systems Biomedicine, Av. du Swing 6, Belvaux, 4367, Luxembourg
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Jaradat AS, Al Mamlook RE, Almakayeel N, Alharbe N, Almuflih AS, Nasayreh A, Gharaibeh H, Gharaibeh M, Gharaibeh A, Bzizi H. Automated Monkeypox Skin Lesion Detection Using Deep Learning and Transfer Learning Techniques. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2023; 20:4422. [PMID: 36901430 PMCID: PMC10001976 DOI: 10.3390/ijerph20054422] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/05/2023] [Revised: 02/26/2023] [Accepted: 02/27/2023] [Indexed: 06/18/2023]
Abstract
The current outbreak of monkeypox (mpox) has become a major public health concern because of the quick spread of this disease across multiple countries. Early detection and diagnosis of mpox is crucial for effective treatment and management. Considering this, the purpose of this research was to detect and validate the best performing model for detecting mpox using deep learning approaches and classification models. To achieve this goal, we evaluated the performance of five common pretrained deep learning models (VGG19, VGG16, ResNet50, MobileNetV2, and EfficientNetB3) and compared their accuracy levels when detecting mpox. The performance of the models was assessed with metrics (i.e., the accuracy, recall, precision, and F1-score). Our experimental results demonstrate that the MobileNetV2 model had the best classification performance with an accuracy level of 98.16%, a recall of 0.96, a precision of 0.99, and an F1-score of 0.98. Additionally, validation of the model with different datasets showed that the highest accuracy of 0.94% was achieved using the MobileNetV2 model. Our findings indicate that the MobileNetV2 method outperforms previous models described in the literature in mpox image classification. These results are promising, as they show that machine learning techniques could be used for the early detection of mpox. Our algorithm was able to achieve a high level of accuracy in classifying mpox in both the training and test sets, making it a potentially valuable tool for quick and accurate diagnosis in clinical settings.
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Affiliation(s)
- Ameera S. Jaradat
- Department of Computer Science, Information Technology and Computer Science, Yarmouk University, Irbid 211633, Jordan
| | - Rabia Emhamed Al Mamlook
- Department Industrial Engineering and Engineering Management, Western Michigan University, Kalamazoo, MI 49008, USA
- Department of Aeronautical Engineering, Al Zawiya University (Seventh of April University), Al Zawiya City P.O. Box 16418, Libya
| | - Naif Almakayeel
- Department of Industrial Engineering, College of Engineering, King Khalid University, Abha 62529, Saudi Arabia
| | - Nawaf Alharbe
- Department of Computer Science, Applied College, Taibah University, Madinah 46537, Saudi Arabia
| | - Ali Saeed Almuflih
- Department of Industrial Engineering, College of Engineering, King Khalid University, Abha 62529, Saudi Arabia
| | - Ahmad Nasayreh
- Department of Computer Science, Information Technology and Computer Science, Yarmouk University, Irbid 211633, Jordan
| | - Hasan Gharaibeh
- Department of Computer Science, Information Technology and Computer Science, Yarmouk University, Irbid 211633, Jordan
| | - Mohammad Gharaibeh
- Department of Medicine, Faculty of Medicine, Hashemite University, Zarqa 13133, Jordan
| | - Ali Gharaibeh
- Department of Medicine, Faculty of Medicine, Jordan University of Science and Technology, Irbid 22110, Jordan
| | - Hanin Bzizi
- Department of Biomedical Science, Western Michigan University, Kalamazoo, MI 49008, USA
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Chadaga K, Prabhu S, Sampathila N, Nireshwalya S, Katta SS, Tan RS, Acharya UR. Application of Artificial Intelligence Techniques for Monkeypox: A Systematic Review. Diagnostics (Basel) 2023; 13:824. [PMID: 36899968 PMCID: PMC10000611 DOI: 10.3390/diagnostics13050824] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2023] [Revised: 02/17/2023] [Accepted: 02/20/2023] [Indexed: 02/24/2023] Open
Abstract
Monkeypox or Mpox is an infectious virus predominantly found in Africa. It has spread to many countries since its latest outbreak. Symptoms such as headaches, chills, and fever are observed in humans. Lumps and rashes also appear on the skin (similar to smallpox, measles, and chickenpox). Many artificial intelligence (AI) models have been developed for accurate and early diagnosis. In this work, we systematically reviewed recent studies that used AI for mpox-related research. After a literature search, 34 studies fulfilling prespecified criteria were selected with the following subject categories: diagnostic testing of mpox, epidemiological modeling of mpox infection spread, drug and vaccine discovery, and media risk management. In the beginning, mpox detection using AI and various modalities was described. Other applications of ML and DL in mitigating mpox were categorized later. The various machine and deep learning algorithms used in the studies and their performance were discussed. We believe that a state-of-the-art review will be a valuable resource for researchers and data scientists in developing measures to counter the mpox virus and its spread.
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Affiliation(s)
- Krishnaraj Chadaga
- Department of Computer Science and Engineering, Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal 576104, India
| | - Srikanth Prabhu
- Department of Computer Science and Engineering, Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal 576104, India
| | - Niranjana Sampathila
- Department of Biomedical Engineering, Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal 576104, India
| | - Sumith Nireshwalya
- Department of Information and Communication Technology, Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal 576104, India
| | - Swathi S. Katta
- Manipal Institute of Management, Manipal Academy of Higher Education, Manipal 576104, India
| | - Ru-San Tan
- Department of Cardiology, National Heart Centre Singapore, Singapore 168752, Singapore
- Duke-NUS Medical School, Singapore 169857, Singapore
| | - U. Rajendra Acharya
- Ngee Ann Polytechnic, Department of Electronics and Computer Engineering, Singapore 599489, Singapore
- Department of Biomedical Engineering, School of Science and Technology, SUSS University, Singapore 599494, Singapore
- Department of Biomedical Informatics and Medical Engineering, Asia University, Taichung 40444, Taiwan
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Bhandari M, Shahi TB, Neupane A, Walsh KB. BotanicX-AI: Identification of Tomato Leaf Diseases Using an Explanation-Driven Deep-Learning Model. J Imaging 2023; 9:jimaging9020053. [PMID: 36826972 PMCID: PMC9964407 DOI: 10.3390/jimaging9020053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Revised: 02/13/2023] [Accepted: 02/14/2023] [Indexed: 02/23/2023] Open
Abstract
Early and accurate tomato disease detection using easily available leaf photos is essential for farmers and stakeholders as it help reduce yield loss due to possible disease epidemics. This paper aims to visually identify nine different infectious diseases (bacterial spot, early blight, Septoria leaf spot, late blight, leaf mold, two-spotted spider mite, mosaic virus, target spot, and yellow leaf curl virus) in tomato leaves in addition to healthy leaves. We implemented EfficientNetB5 with a tomato leaf disease (TLD) dataset without any segmentation, and the model achieved an average training accuracy of 99.84% ± 0.10%, average validation accuracy of 98.28% ± 0.20%, and average test accuracy of 99.07% ± 0.38% over 10 cross folds.The use of gradient-weighted class activation mapping (GradCAM) and local interpretable model-agnostic explanations are proposed to provide model interpretability, which is essential to predictive performance, helpful in building trust, and required for integration into agricultural practice.
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Affiliation(s)
- Mohan Bhandari
- Department of Science and Technology, Samriddhi College, Bhaktapur 44800, Nepal
| | - Tej Bahadur Shahi
- School of Engineering and Technology, Central Queensland University, Norman Gardens, Rockhampton 4701, Australia
- Central Department of Computer Science and IT, Tribhuvan University, Kathmandu 44600, Nepal
| | - Arjun Neupane
- School of Engineering and Technology, Central Queensland University, Norman Gardens, Rockhampton 4701, Australia
- Correspondence:
| | - Kerry Brian Walsh
- Institute for Future Farming Systems, Central Queensland University, Rockhampton 4701, Australia
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Kumar A. An XNOR-ResNet and spatial pyramid pooling-based YOLO v3-tiny algorithm for Monkeypox and similar skin disease detection. THE IMAGING SCIENCE JOURNAL 2023. [DOI: 10.1080/13682199.2023.2175423] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/12/2023]
Affiliation(s)
- Akhil Kumar
- School of Computer Science & Engineering, Vellore Institute of Technology, Chennai, India
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Altun M, Gürüler H, Özkaraca O, Khan F, Khan J, Lee Y. Monkeypox Detection Using CNN with Transfer Learning. SENSORS (BASEL, SWITZERLAND) 2023; 23:s23041783. [PMID: 36850381 PMCID: PMC9964526 DOI: 10.3390/s23041783] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Revised: 01/31/2023] [Accepted: 02/01/2023] [Indexed: 06/01/2023]
Abstract
Monkeypox disease is caused by a virus that causes lesions on the skin and has been observed on the African continent in the past years. The fatal consequences caused by virus infections after the COVID pandemic have caused fear and panic among the public. As a result of COVID reaching the pandemic dimension, the development and implementation of rapid detection methods have become important. In this context, our study aims to detect monkeypox disease in case of a possible pandemic through skin lesions with deep-learning methods in a fast and safe way. Deep-learning methods were supported with transfer learning tools and hyperparameter optimization was provided. In the CNN structure, a hybrid function learning model was developed by customizing the transfer learning model together with hyperparameters. Implemented on the custom model MobileNetV3-s, EfficientNetV2, ResNET50, Vgg19, DenseNet121, and Xception models. In our study, AUC, accuracy, recall, loss, and F1-score metrics were used for evaluation and comparison. The optimized hybrid MobileNetV3-s model achieved the best score, with an average F1-score of 0.98, AUC of 0.99, accuracy of 0.96, and recall of 0.97. In this study, convolutional neural networks were used in conjunction with optimization of hyperparameters and a customized hybrid function transfer learning model to achieve striking results when a custom CNN model was developed. The custom CNN model design we have proposed is proof of how successfully and quickly the deep learning methods can achieve results in classification and discrimination.
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Affiliation(s)
- Murat Altun
- Department of Information Systems Engineering, Faculty of Technology, Mugla Sitki Kocman University, Mugla 48000, Turkey
| | - Hüseyin Gürüler
- Department of Information Systems Engineering, Faculty of Technology, Mugla Sitki Kocman University, Mugla 48000, Turkey
| | - Osman Özkaraca
- Department of Information Systems Engineering, Faculty of Technology, Mugla Sitki Kocman University, Mugla 48000, Turkey
| | - Faheem Khan
- Department of Computer Engineering, Gachon University, Seongnam-si 13120, Republic of Korea
| | - Jawad Khan
- Department of Robotics, Hanyang University, Ansan 15588, Republic of Korea
| | - Youngmoon Lee
- Department of Robotics, Hanyang University, Ansan 15588, Republic of Korea
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Iparraguirre-Villanueva O, Alvarez-Risco A, Herrera Salazar JL, Beltozar-Clemente S, Zapata-Paulini J, Yáñez JA, Cabanillas-Carbonell M. The Public Health Contribution of Sentiment Analysis of Monkeypox Tweets to Detect Polarities Using the CNN-LSTM Model. Vaccines (Basel) 2023; 11:vaccines11020312. [PMID: 36851190 PMCID: PMC9966732 DOI: 10.3390/vaccines11020312] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2022] [Revised: 01/19/2023] [Accepted: 01/20/2023] [Indexed: 02/04/2023] Open
Abstract
Monkeypox is a rare disease caused by the monkeypox virus. This disease was considered eradicated in 1980 and was believed to affect rodents and not humans. However, recent years have seen a massive outbreak of monkeypox in humans, setting off worldwide alerts from health agencies. As of September 2022, the number of confirmed cases in Peru had reached 1964. Although most monkeypox patients have been discharged, we cannot neglect the monitoring of the population with respect to the monkeypox virus. Lately, the population has started to express their feelings and opinions through social media, specifically Twitter, as it is the most used social medium and is an ideal space to gather what people think about the monkeypox virus. The information imparted through this medium can be in different formats, such as text, videos, images, audio, etc. The objective of this work is to analyze the positive, negative, and neutral feelings of people who publish their opinions on Twitter with the hashtag #Monkeypox. To find out what people think about this disease, a hybrid-based model architecture built on CNN and LSTM was used to determine the prediction accuracy. The prediction result obtained from the total monkeypox data was 83% accurate. Other performance metrics were also used to evaluate the model, such as specificity, recall level, and F1 score, representing 99%, 85%, and 88%, respectively. The results also showed the polarity of feelings through the CNN-LSTM confusion matrix, where 45.42% of people expressed neither positive nor negative opinions, while 19.45% expressed negative and fearful feelings about this infectious disease. The results of this work contribute to raising public awareness about the monkeypox virus.
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Affiliation(s)
| | - Aldo Alvarez-Risco
- Carrera de Negocios Internacionales Facultad de Ciencias Empresariales y Económicas, Universidad de Lima, Lima 15023, Peru
| | - Jose Luis Herrera Salazar
- Facultad de Ingeniería, Ciencias y Administración, Universidad Autónoma de Ica, Chincha Alta 11701, Peru
| | | | | | - Jaime A. Yáñez
- Vicerrectorado de Investigación, Universidad Norbert Wiener, Lima 15046, Peru
- Correspondence: (J.A.Y.); (M.C.-C.)
| | - Michael Cabanillas-Carbonell
- Escuela Técnica Superior de Ingenieros de Telecomunicación, Universidad Politécnica de Madrid, 28040 Madrid, Spain
- Correspondence: (J.A.Y.); (M.C.-C.)
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Attallah O. MonDiaL-CAD: Monkeypox diagnosis via selected hybrid CNNs unified with feature selection and ensemble learning. Digit Health 2023; 9:20552076231180054. [PMID: 37312961 PMCID: PMC10259124 DOI: 10.1177/20552076231180054] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2023] [Accepted: 05/18/2023] [Indexed: 06/15/2023] Open
Abstract
Objective Recently, monkeypox virus is slowly evolving and there are fears it will spread as COVID-19. Computer-aided diagnosis (CAD) based on deep learning approaches especially convolutional neural network (CNN) can assist in the rapid determination of reported incidents. The current CADs were mostly based on an individual CNN. Few CADs employed multiple CNNs but did not investigate which combination of CNNs has a greater impact on the performance. Furthermore, they relied on only spatial information of deep features to train their models. This study aims to construct a CAD tool named "Monkey-CAD" that can address the previous limitations and automatically diagnose monkeypox rapidly and accurately. Methods Monkey-CAD extracts features from eight CNNs and then examines the best possible combination of deep features that influence classification. It employs discrete wavelet transform (DWT) to merge features which diminishes fused features' size and provides a time-frequency demonstration. These deep features' sizes are then further reduced via an entropy-based feature selection approach. These reduced fused features are finally used to deliver a better representation of the input features and feed three ensemble classifiers. Results Two freely accessible datasets called Monkeypox skin image (MSID) and Monkeypox skin lesion (MSLD) are employed in this study. Monkey-CAD could discriminate among cases with and without Monkeypox achieving an accuracy of 97.1% for MSID and 98.7% for MSLD datasets respectively. Conclusions Such promising results demonstrate that the Monkey-CAD can be employed to assist health practitioners. They also verify that fusing deep features from selected CNNs can boost performance.
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Affiliation(s)
- Omneya Attallah
- Department of Electronics and Communications Engineering, College of Engineering and Technology, Arab Academy for Science, Technology and Maritime Transport, Alexandria, Egypt
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43
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Deep SVDD and Transfer Learning for COVID-19 Diagnosis Using CT Images. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2023; 2023:6070970. [PMID: 36926185 PMCID: PMC10014155 DOI: 10.1155/2023/6070970] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2022] [Revised: 01/25/2023] [Accepted: 02/06/2023] [Indexed: 03/09/2023]
Abstract
The novel coronavirus disease (COVID-19), which appeared in Wuhan, China, is spreading rapidly worldwide. Health systems in many countries have collapsed as a result of this pandemic, and hundreds of thousands of people have died due to acute respiratory distress syndrome caused by this virus. As a result, diagnosing COVID-19 in the early stages of infection is critical in the fight against the disease because it saves the patient's life and prevents the disease from spreading. In this study, we proposed a novel approach based on transfer learning and deep support vector data description (DSVDD) to distinguish among COVID-19, non-COVID-19 pneumonia, and intact CT images. Our approach consists of three models, each of which can classify one specific category as normal and the other as anomalous. To our knowledge, this is the first study to use the one-class DSVDD and transfer learning to diagnose lung disease. For the proposed approach, we used two scenarios: one with pretrained VGG16 and one with ResNet50. The proposed models were trained using data gathered with the assistance of an expert radiologist from three internet-accessible sources in end-to-end fusion using three split data ratios. Based on training with 70%, 50%, and 30% of the data, the proposed VGG16 models achieved (0.8281, 0.9170, and 0.9294) for the F1 score, while the proposed ResNet50 models achieved (0.9109, 0.9188, and 0.9333).
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León-Figueroa DA, Barboza JJ, Saldaña-Cumpa HM, Moreno-Ramos E, Bonilla-Aldana DK, Valladares-Garrido MJ, Sah R, Rodriguez-Morales AJ. Detection of Monkeypox Virus according to The Collection Site of Samples from Confirmed Cases: A Systematic Review. Trop Med Infect Dis 2022; 8:tropicalmed8010004. [PMID: 36668911 PMCID: PMC9865842 DOI: 10.3390/tropicalmed8010004] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2022] [Revised: 12/11/2022] [Accepted: 12/12/2022] [Indexed: 12/24/2022] Open
Abstract
Due to the rapid evolution of the monkeypox virus, the means by which the monkeypox virus is spread is subject to change. Therefore, the present study aims to analyze the detection of the monkeypox virus according to the collection site of samples from confirmed monkeypox cases. A systematic literature review was performed using PubMed, Scopus, Web of Science, and Embase databases until 5 October 2022. A total of 1022 articles were retrieved using the search strategy. After removing duplicates (n = 566) and examining by title, abstract, and full text, 65 studies reporting monkeypox case reports were included with a detailed description of risk factors, sexually transmitted infections (STIs), site of monkeypox virus-positive specimens, location of skin lesions, and diagnostic test. A total of 4537 confirmed monkeypox cases have been reported, of which 98.72% of the cases were male with a mean age of 36 years, 95.72% had a sexual behavior of being men who have sex with men, and 28.1% had human immunodeficiency virus (HIV). The most frequent locations of lesions in patients diagnosed with monkeypox were: 42.85% on the genitalia and 37.1% in the perianal region. All confirmed monkeypox cases were diagnosed by reverse transcriptase polymerase chain reaction (RT-PCR), and the most frequent locations of samples collected for diagnosis that tested positive for monkeypox virus were: 91.85% from skin lesions, 20.81% from the oropharynx, 3.19% from blood, and 2.43% from seminal fluid. The disease course of the cases with monkeypox was asynchronous, with no severe complications, and most patients did not report specific treatment but simply followed a symptomatic treatment.
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Affiliation(s)
- Darwin A. León-Figueroa
- Facultad de Medicina Humana, Universidad de San Martín de Porres, Chiclayo 15011, Peru
- Centro de Investigación en Atención Primaria en Salud, Universidad Peruana Cayetano Heredia, Lima 15102, Peru
| | - Joshuan J. Barboza
- Vicerrectorado de Investigación, Universidad Norbert Wiener, Lima 15046, Peru
- Correspondence: ; Tel.: +51-99-2108-520
| | - Hortencia M. Saldaña-Cumpa
- Facultad de Medicina Humana, Universidad de San Martín de Porres, Chiclayo 15011, Peru
- Centro de Investigación en Atención Primaria en Salud, Universidad Peruana Cayetano Heredia, Lima 15102, Peru
| | | | | | - Mario J. Valladares-Garrido
- Facultad de Medicina Humana, Universidad de San Martín de Porres, Chiclayo 15011, Peru
- Oficina de Epidemiología, Hospital Regional Lambayeque, Chiclayo 14012, Peru
- Facultad de Medicina, Universidad Cesar Vallejo, Piura 20002, Peru
| | - Ranjit Sah
- Institute of Medicine, Tribhuvan University Teaching Hospital, Kathmandu 44600, Nepal
- Dr. D.Y Patil Medical College, Hospital and Research Center, Dr. D.Y. Patil Vidyapeeth, Pune 411018, Maharashtra, India
| | - Alfonso J. Rodriguez-Morales
- Grupo de Investigación Biomedicina, Faculty of Medicine, Fundacion Universitaria Autonoma de las Americas, Pereira 660001, Risaralda, Colombia
- Latin American Network of Monkeypox Virus Research (LAMOVI), Pereira 660003, Risaralda, Colombia
- Master of Clinical Epidemiology and Biostatistics, Universidad Cientifica del Sur, Lima 15067, Peru
- Gilbert and Rose-Marie Chagoury School of Medicine, Lebanese American University, Beirut 1102, Lebanon
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Bhandari M, Neupane A, Mallik S, Gaur L, Qin H. Auguring Fake Face Images Using Dual Input Convolution Neural Network. J Imaging 2022; 9:3. [PMID: 36662101 PMCID: PMC9861767 DOI: 10.3390/jimaging9010003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2022] [Revised: 12/06/2022] [Accepted: 12/13/2022] [Indexed: 12/24/2022] Open
Abstract
Deepfake technology uses auto-encoders and generative adversarial networks to replace or artificially construct fine-tuned faces, emotions, and sounds. Although there have been significant advancements in the identification of particular fake images, a reliable counterfeit face detector is still lacking, making it difficult to identify fake photos in situations with further compression, blurring, scaling, etc. Deep learning models resolve the research gap to correctly recognize phony images, whose objectionable content might encourage fraudulent activity and cause major problems. To reduce the gap and enlarge the fields of view of the network, we propose a dual input convolutional neural network (DICNN) model with ten-fold cross validation with an average training accuracy of 99.36 ± 0.62, a test accuracy of 99.08 ± 0.64, and a validation accuracy of 99.30 ± 0.94. Additionally, we used 'SHapley Additive exPlanations (SHAP) ' as explainable AI (XAI) Shapely values to explain the results and interoperability visually by imposing the model into SHAP. The proposed model holds significant importance for being accepted by forensics and security experts because of its distinctive features and considerably higher accuracy than state-of-the-art methods.
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Affiliation(s)
- Mohan Bhandari
- Department of Science and Technology, Samriddhi College, Lokanthali, Bhaktapur 44800, Nepal
| | - Arjun Neupane
- School of Engineering and Technology, Central Queensland University, Norman Gardens, Rockhampton, QLD 4701, Australia
| | - Saurav Mallik
- Department of Environmental Health, School of Public Health, Harvard University, Boston, MA 02115, USA
- Research Assistant, University of Arizona, Tucson, AZ 85721, USA
| | - Loveleen Gaur
- Amity International Business School, Amity University, Noida 201303, India
- School of Computer Science, Taylor University, Subang Jaya 47500, Malaysia
- Graduate School of Business, University of South Pacific, Suva 1168, Fiji
| | - Hong Qin
- Department of Computer Science and Engineering, University of Tennessee, Chattanooga, TN 37996, USA
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Khafaga DS, Ibrahim A, El-Kenawy ESM, Abdelhamid AA, Karim FK, Mirjalili S, Khodadadi N, Lim WH, Eid MM, Ghoneim ME. An Al-Biruni Earth Radius Optimization-Based Deep Convolutional Neural Network for Classifying Monkeypox Disease. Diagnostics (Basel) 2022; 12:diagnostics12112892. [PMID: 36428952 PMCID: PMC9689640 DOI: 10.3390/diagnostics12112892] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Revised: 11/04/2022] [Accepted: 11/18/2022] [Indexed: 11/23/2022] Open
Abstract
Human skin diseases have become increasingly prevalent in recent decades, with millions of individuals in developed countries experiencing monkeypox. Such conditions often carry less obvious but no less devastating risks, including increased vulnerability to monkeypox, cancer, and low self-esteem. Due to the low visual resolution of monkeypox disease images, medical specialists with high-level tools are typically required for a proper diagnosis. The manual diagnosis of monkeypox disease is subjective, time-consuming, and labor-intensive. Therefore, it is necessary to create a computer-aided approach for the automated diagnosis of monkeypox disease. Most research articles on monkeypox disease relied on convolutional neural networks (CNNs) and using classical loss functions, allowing them to pick up discriminative elements in monkeypox images. To enhance this, a novel framework using Al-Biruni Earth radius (BER) optimization-based stochastic fractal search (BERSFS) is proposed to fine-tune the deep CNN layers for classifying monkeypox disease from images. As a first step in the proposed approach, we use deep CNN-based models to learn the embedding of input images in Euclidean space. In the second step, we use an optimized classification model based on the triplet loss function to calculate the distance between pairs of images in Euclidean space and learn features that may be used to distinguish between different cases, including monkeypox cases. The proposed approach uses images of human skin diseases obtained from an African hospital. The experimental results of the study demonstrate the proposed framework's efficacy, as it outperforms numerous examples of prior research on skin disease problems. On the other hand, statistical experiments with Wilcoxon and analysis of variance (ANOVA) tests are conducted to evaluate the proposed approach in terms of effectiveness and stability. The recorded results confirm the superiority of the proposed method when compared with other optimization algorithms and machine learning models.
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Affiliation(s)
- Doaa Sami Khafaga
- Department of Computer Sciences, College of Computer and Information Sciences, Princess Nourah bint Abdulrahman University, Riyadh 11671, Saudi Arabia
- Correspondence: (D.S.K.); (E.-S.M.E.-K.); (A.A.A.); (F.K.K.)
| | - Abdelhameed Ibrahim
- Computer Engineering and Control Systems Department, Faculty of Engineering, Mansoura University, Mansoura 35516, Egypt
| | - El-Sayed M. El-Kenawy
- Department of Communications and Electronics, Delta Higher Institute of Engineering and Technology, Mansoura 35111, Egypt
- Correspondence: (D.S.K.); (E.-S.M.E.-K.); (A.A.A.); (F.K.K.)
| | - Abdelaziz A. Abdelhamid
- Department of Computer Science, College of Computing and Information Technology, Shaqra University, Shaqra 11961, Saudi Arabia
- Department of Computer Science, Faculty of Computer and Information Sciences, Ain Shams University, Cairo 11566, Egypt
- Correspondence: (D.S.K.); (E.-S.M.E.-K.); (A.A.A.); (F.K.K.)
| | - Faten Khalid Karim
- Department of Computer Sciences, College of Computer and Information Sciences, Princess Nourah bint Abdulrahman University, Riyadh 11671, Saudi Arabia
- Correspondence: (D.S.K.); (E.-S.M.E.-K.); (A.A.A.); (F.K.K.)
| | - Seyedali Mirjalili
- Centre for Artificial Intelligence Research and Optimization, Torrens University Australia, Fortitude Valley, QLD 4006, Australia
- Yonsei Frontier Lab, Yonsei University, Seoul 03722, Republic of Korea
| | - Nima Khodadadi
- Department of Civil and Environmental Engineering, Florida International University, Miami, FL 33199, USA
| | - Wei Hong Lim
- Faculty of Engineering, Technology and Built Environment, UCSI University, Kuala Lumpur 56000, Malaysia
| | - Marwa M. Eid
- Faculty of Artificial Intelligence, Delta University for Science and Technology, Mansoura 35712, Egypt
| | - Mohamed E. Ghoneim
- Department of Mathematical Sciences, Faculty of Applied Science, Umm Al-Qura University, Makkah 21955, Saudi Arabia
- Faculty of Computers and Artificial Intelligence, Damietta University, Damietta 34511, Egypt
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Monkeypox Virus Detection and Deep Learning-based Approaches: Correspondence. J Med Syst 2022; 46:98. [PMID: 36394654 DOI: 10.1007/s10916-022-01889-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Accepted: 11/08/2022] [Indexed: 11/18/2022]
Abstract
This letter to the editor discusses the publication of a paper on monkeypox virus detection and deep learning-based approaches. Confounding issues regarding diagnosis are discussed.
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Ayadi M, Ksibi A, Al-Rasheed A, Soufiene BO. COVID-AleXception: A Deep Learning Model Based on a Deep Feature Concatenation Approach for the Detection of COVID-19 from Chest X-ray Images. Healthcare (Basel) 2022; 10:healthcare10102072. [PMID: 36292519 PMCID: PMC9601977 DOI: 10.3390/healthcare10102072] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Revised: 10/10/2022] [Accepted: 10/16/2022] [Indexed: 12/21/2022] Open
Abstract
The novel coronavirus 2019 (COVID-19) spread rapidly around the world and its outbreak has become a pandemic. Due to an increase in afflicted cases, the quantity of COVID-19 tests kits available in hospitals has decreased. Therefore, an autonomous detection system is an essential tool for reducing infection risks and spreading of the virus. In the literature, various models based on machine learning (ML) and deep learning (DL) are introduced to detect many pneumonias using chest X-ray images. The cornerstone in this paper is the use of pretrained deep learning CNN architectures to construct an automated system for COVID-19 detection and diagnosis. In this work, we used the deep feature concatenation (DFC) mechanism to combine features extracted from input images using the two modern pre-trained CNN models, AlexNet and Xception. Hence, we propose COVID-AleXception: a neural network that is a concatenation of the AlexNet and Xception models for the overall improvement of the prediction capability of this pandemic. To evaluate the proposed model and build a dataset of large-scale X-ray images, there was a careful selection of multiple X-ray images from several sources. The COVID-AleXception model can achieve a classification accuracy of 98.68%, which shows the superiority of the proposed model over AlexNet and Xception that achieved a classification accuracy of 94.86% and 95.63%, respectively. The performance results of this proposed model demonstrate its pertinence to help radiologists diagnose COVID-19 more quickly.
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Affiliation(s)
- Manel Ayadi
- Department of Information Systems, College of Computer and Information Sciences, Princess Nourah bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia
| | - Amel Ksibi
- Department of Information Systems, College of Computer and Information Sciences, Princess Nourah bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia
- Correspondence:
| | - Amal Al-Rasheed
- Department of Information Systems, College of Computer and Information Sciences, Princess Nourah bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia
| | - Ben Othman Soufiene
- Prince Laboratory Research, ISITcom (Institut Supérieur d’Informatique et des Techniques de Communication de Hammam Sousse), University of Sousse, Hammam Sousse 4023, Tunisia
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