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For: Kirwan JA, Gika H, Beger RD, Bearden D, Dunn WB, Goodacre R, Theodoridis G, Witting M, Yu LR, Wilson ID. Quality assurance and quality control reporting in untargeted metabolic phenotyping: mQACC recommendations for analytical quality management. Metabolomics 2022;18:70. [PMID: 36029375 PMCID: PMC9420093 DOI: 10.1007/s11306-022-01926-3] [Citation(s) in RCA: 94] [Impact Index Per Article: 31.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/04/2022] [Accepted: 07/25/2022] [Indexed: 11/12/2022]
Number Cited by Other Article(s)
1
Hajnajafi K, Iqbal MA. Mass-spectrometry based metabolomics: an overview of workflows, strategies, data analysis and applications. Proteome Sci 2025;23:5. [PMID: 40420110 PMCID: PMC12105183 DOI: 10.1186/s12953-025-00241-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2024] [Accepted: 03/26/2025] [Indexed: 05/28/2025]  Open
2
Steuer C, Raeber J. A story of falsification and authentication: Authenticity control of phytopharmaceuticals and herbal remedies. Eur J Pharm Sci 2025;211:107136. [PMID: 40409514 DOI: 10.1016/j.ejps.2025.107136] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2025] [Revised: 05/15/2025] [Accepted: 05/20/2025] [Indexed: 05/25/2025]
3
Sánchez CAR, Pardo-Rodriguez D, Mancera-Soto E, León L, Paulucio D, D’Alessandro A, Santos CGM, Cristancho E, Monnerat G, Ramos-Caballero DM, Cala MP, Pompeu F. Metabolic insights into hypoxia adaptation in adolescent athletes at different altitudes: a cross-sectional study. Front Mol Biosci 2025;12:1571103. [PMID: 40417063 PMCID: PMC12098079 DOI: 10.3389/fmolb.2025.1571103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2025] [Accepted: 04/21/2025] [Indexed: 05/27/2025]  Open
4
Dias DB, Chan W, Ellinghaus A, Fritsche-Guenther R, Wiebach J, Bembennek A, Laske T, Baumbach J, Duda GN, Kirwan JA, Poh PSP. Endogenous dysregulated energy and amino acid metabolism delay scaffold-guided large volume bone regeneration in a diabetic rat model with Leptin receptor deficiency. Acta Biomater 2025:S1742-7061(25)00328-9. [PMID: 40319991 DOI: 10.1016/j.actbio.2025.05.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2024] [Revised: 04/28/2025] [Accepted: 05/01/2025] [Indexed: 05/07/2025]
5
Aya V, Pardo-Rodriguez D, Vega LC, Cala MP, Ramírez JD. Integrating metagenomics and metabolomics to study the gut microbiome and host relationships in sports across different energy systems. Sci Rep 2025;15:15356. [PMID: 40316630 PMCID: PMC12048592 DOI: 10.1038/s41598-025-98973-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2024] [Accepted: 04/16/2025] [Indexed: 05/04/2025]  Open
6
Sobus JR, Sayre-Smith NA, Chao A, Ferland TM, Minucci JM, Carr ET, Brunelle LD, Batt AL, Whitehead HD, Cathey T, Boyce M, Ulrich EM, McCord JP, Williams AJ. Automated QA/QC reporting for non-targeted analysis: a demonstration of "INTERPRET NTA" with de facto water reuse data. Anal Bioanal Chem 2025;417:1897-1914. [PMID: 39953322 DOI: 10.1007/s00216-025-05771-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2024] [Revised: 01/23/2025] [Accepted: 01/24/2025] [Indexed: 02/17/2025]
7
Fisher CM, Miele MM, Knolhoff AM. Community Needs and Proposed Solutions for a Broadly Applicable Standard/QC Mixture for High-Resolution Mass Spectrometry-Based Non-Targeted Analysis. Anal Chem 2025;97:5424-5433. [PMID: 40042173 DOI: 10.1021/acs.analchem.4c05710] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/19/2025]
8
Moran-Garrido M, Camunas-Alberca SM, Sáiz J, Gradillas A, Taha AY, Barbas C. Deeper insights into the stability of oxylipins in human plasma across multiple freeze-thaw cycles and storage conditions. J Pharm Biomed Anal 2025;255:116587. [PMID: 39647243 DOI: 10.1016/j.jpba.2024.116587] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2024] [Revised: 10/29/2024] [Accepted: 11/27/2024] [Indexed: 12/10/2024]
9
Sedighikamal H, Mashayekhan S. Critical assessment of quenching and extraction/sample preparation methods for microorganisms in metabolomics. Metabolomics 2025;21:40. [PMID: 40082321 DOI: 10.1007/s11306-025-02228-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/06/2024] [Accepted: 01/29/2025] [Indexed: 03/16/2025]
10
Zuffa S, Charron-Lamoureux V, Brennan C, Ambre M, Knight R, Dorrestein PC. Human Untargeted Metabolomics in High-Throughput Gut Microbiome Research: Ethanol vs Methanol. Anal Chem 2025;97:4945-4953. [PMID: 40015251 PMCID: PMC11912123 DOI: 10.1021/acs.analchem.4c05142] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2024] [Revised: 01/07/2025] [Accepted: 02/18/2025] [Indexed: 03/01/2025]
11
Charron-Lamoureux V, Mannochio-Russo H, Lamichhane S, Xing S, Patan A, Portal Gomes PW, Rajkumar P, Deleray V, Caraballo-Rodríguez AM, Chua KV, Lee LS, Liu Z, Ching J, Wang M, Dorrestein PC. A guide to reverse metabolomics-a framework for big data discovery strategy. Nat Protoc 2025:10.1038/s41596-024-01136-2. [PMID: 40021805 DOI: 10.1038/s41596-024-01136-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Accepted: 12/17/2024] [Indexed: 03/03/2025]
12
Qu J, Xu Z, Peng Z, Chen Z, Chen T, Ding C. Integrated transcriptome and metabolome analyses reveal the differentially expressed metabolites and genes involved in lipid in olive fruits. PeerJ 2025;13:e18941. [PMID: 39981043 PMCID: PMC11841613 DOI: 10.7717/peerj.18941] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2024] [Accepted: 01/16/2025] [Indexed: 02/22/2025]  Open
13
Nason SL, McCord J, Feng YL, Sobus JR, Fisher CM, Marfil-Vega R, Phillips AL, Johnson G, Sloop J, Bayen S, Mutlu E, Batt AL, Nahan K. Communicating with Stakeholders to Identify High-Impact Research Directions for Non-Targeted Analysis. Anal Chem 2025;97:2567-2578. [PMID: 39883652 PMCID: PMC11886761 DOI: 10.1021/acs.analchem.4c04801] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2025]
14
Interino N, Vitagliano R, D’Amico F, Lodi R, Porru E, Turroni S, Fiori J. Microbiota-Gut-Brain Axis: Mass-Spectrometry-Based Metabolomics in the Study of Microbiome Mediators-Stress Relationship. Biomolecules 2025;15:243. [PMID: 40001546 PMCID: PMC11853089 DOI: 10.3390/biom15020243] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2024] [Revised: 01/26/2025] [Accepted: 02/04/2025] [Indexed: 02/27/2025]  Open
15
Chen F, Zhao D, Xu Y, Zhang Y, Chen MH, Pathak KV, Hansen N, Lovell B, Liang Y, Estrella K, Wang WL, Ghoda L, Rockne R, Wu X, Ali H, Yu J, Caligiuri MA, Forman SJ, Trent JM, Kuo YH, Li L, Swiderski P, Zhang J, Kortylewski M, Nguyen LXT, Pirrotte P, Boldin M, Marcucci G, Zhang B. miR-142 deficit in T cells during blast crisis promotes chronic myeloid leukemia immune escape. Nat Commun 2025;16:1253. [PMID: 39893171 PMCID: PMC11787332 DOI: 10.1038/s41467-025-56383-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2024] [Accepted: 01/14/2025] [Indexed: 02/04/2025]  Open
16
Ariza-Garcia WA, Pardo-Rodriguez D, Guerrero Alvarez GE, Taborda-Ocampo G, Rosero-Moreano M, Cala MP. Forensic metabolomics: Tracing cyanide-induced metabolic changes in fatalities. Forensic Sci Int 2025;367:112350. [PMID: 39709742 DOI: 10.1016/j.forsciint.2024.112350] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2024] [Revised: 12/06/2024] [Accepted: 12/16/2024] [Indexed: 12/24/2024]
17
Thaitumu MN, De Sá e Silva DM, Louail P, Rainer J, Avgerinou G, Petridou A, Mougios V, Theodoridis G, Gika H. LC-MS-Based Global Metabolic Profiles of Alternative Blood Specimens Collected by Microsampling. Metabolites 2025;15:62. [PMID: 39852404 PMCID: PMC11767270 DOI: 10.3390/metabo15010062] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2024] [Revised: 01/09/2025] [Accepted: 01/11/2025] [Indexed: 01/26/2025]  Open
18
Peterka O, Langová A, Jirásko R, Holčapek M. Bioinert UHPLC system improves sensitivity and peak shapes for ionic metabolites. J Chromatogr A 2025;1740:465588. [PMID: 39662336 DOI: 10.1016/j.chroma.2024.465588] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2024] [Revised: 12/04/2024] [Accepted: 12/05/2024] [Indexed: 12/13/2024]
19
Mojsak P, Samczuk P, Klimaszewska P, Burdukiewicz M, Chilimoniuk J, Grzesiak K, Pietrowska K, Ciborowska J, Niemcunowicz-Janica A, Kretowski A, Ciborowski M, Szeremeta M. Comparative analysis of anticoagulant influence on PMI estimation based on porcine blood metabolomics profile measured using GC-MS. Front Mol Biosci 2025;11:1400622. [PMID: 39840077 PMCID: PMC11746058 DOI: 10.3389/fmolb.2024.1400622] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2024] [Accepted: 12/18/2024] [Indexed: 01/23/2025]  Open
20
da Cunha ALRR, Barbosa JMG, Martins NM, de Oliveira CG, de Oliveira AE, Antoniosi Filho NR. An optimization protocol of the volatile organic compounds analysis in earwax samples for untargeted volatilomics. J Chromatogr A 2025;1739:465538. [PMID: 39580983 DOI: 10.1016/j.chroma.2024.465538] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2024] [Revised: 11/08/2024] [Accepted: 11/16/2024] [Indexed: 11/26/2024]
21
Kirwan JA, Bruning U, Mosley JD. Quality Assurance in Metabolomics and Metabolic Profiling. Methods Mol Biol 2025;2891:15-51. [PMID: 39812975 DOI: 10.1007/978-1-0716-4334-1_2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2025]
22
Zhang W, Li L, Zhao Y, Yang H, Zhang X, Zhang Z, Wang X, Xu Z, Wang W, Deng J. Characterization of differences in volatile compounds and metabolites of six varieties of potato with different processing properties. Food Chem X 2025;25:102116. [PMID: 39829997 PMCID: PMC11741029 DOI: 10.1016/j.fochx.2024.102116] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2024] [Revised: 12/08/2024] [Accepted: 12/20/2024] [Indexed: 01/22/2025]  Open
23
Ramos M, Camel V, Le Roux E, Farah S, Cladiere M. Effect of different pooled qc samples on data quality during an inter-batch experiment in untargeted UHPLC-HRMS analysis on two different MS platforms. Anal Bioanal Chem 2025;417:311-321. [PMID: 39557686 DOI: 10.1007/s00216-024-05646-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2024] [Revised: 10/30/2024] [Accepted: 10/31/2024] [Indexed: 11/20/2024]
24
Begou O, Gika HG, Theodoridis G, Wilson ID. Quality Control and Validation Issues in LC-MS-Based Metabolomics. Methods Mol Biol 2025;2891:53-66. [PMID: 39812976 DOI: 10.1007/978-1-0716-4334-1_3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2025]
25
Mamani-Huanca M, Martínez S, López-López Á, López-Gonzálvez Á, Albóniga OE, Gradillas A, Barbas C, González-Ruiz V. CE-MS-Based Clinical Metabolomics of Human Plasma. Methods Mol Biol 2025;2855:389-423. [PMID: 39354320 DOI: 10.1007/978-1-0716-4116-3_23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/03/2024]
26
Schneider JL, Han S, Nabel CS. Fuel for thought: targeting metabolism in lung cancer. Transl Lung Cancer Res 2024;13:3692-3717. [PMID: 39830762 PMCID: PMC11736591 DOI: 10.21037/tlcr-24-662] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2024] [Accepted: 11/22/2024] [Indexed: 01/22/2025]
27
Sharma S, Dong Q, Haid M, Adam J, Bizzotto R, Fernandez-Tajes JJ, Jones AG, Tura A, Artati A, Prehn C, Kastenmüller G, Koivula RW, Franks PW, Walker M, Forgie IM, Giordano G, Pavo I, Ruetten H, Dermitzakis M, McCarthy MI, Pedersen O, Schwenk JM, Tsirigos KD, De Masi F, Brunak S, Viñuela A, Mari A, McDonald TJ, Kokkola T, Adamski J, Pearson ER, Grallert H. Role of human plasma metabolites in prediabetes and type 2 diabetes from the IMI-DIRECT study. Diabetologia 2024;67:2804-2818. [PMID: 39349772 PMCID: PMC11604760 DOI: 10.1007/s00125-024-06282-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Accepted: 07/29/2024] [Indexed: 11/29/2024]
28
Zararsiz GE, Lintelmann J, Cecil A, Kirwan J, Poschet G, Gegner HM, Schuchardt S, Guan XL, Saigusa D, Wishart D, Zheng J, Mandal R, Adams K, Thompson JW, Snyder MP, Contrepois K, Chen S, Ashrafi N, Akyol S, Yilmaz A, Graham SF, O’Connell TM, Kalecký K, Bottiglieri T, Limonciel A, Pham HT, Koal T, Adamski J, Kastenmüller G. Interlaboratory comparison of standardised metabolomics and lipidomics analyses in human and rodent blood using the MxP® Quant 500 kit. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.11.13.619447. [PMID: 39605511 PMCID: PMC11601468 DOI: 10.1101/2024.11.13.619447] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/29/2024]
29
Cruz AK, Alves MA, Andresson T, Bayless AL, Bloodsworth KJ, Bowden JA, Bullock K, Burnet MC, Neto FC, Choy A, Clish CB, Couvillion SP, Cumeras R, Dailey L, Dallmann G, Davis WC, Deik AA, Dickens AM, Djukovic D, Dorrestein PC, Eder JG, Fiehn O, Flores R, Gika H, Hagiwara KA, Pham TH, Harynuk JJ, Aristizabal-Henao JJ, Hoyt DW, Jean-François F, Kråkström M, Kumar A, Kyle JE, Lamichhane S, Li Y, Nam SL, Mandal R, de la Mata AP, Meehan MJ, Meikopoulos T, Metz TO, Mouskeftara T, Munoz N, Gowda GAN, Orešic M, Panitchpakdi M, Pierre-Hugues S, Raftery D, Rushing B, Schock T, Seifried H, Servetas S, Shen T, Sumner S, Carrillo KST, Thibaut D, Trejo JB, Van Meulebroek L, Vanhaecke L, Virgiliou C, Weldon KC, Wishart DS, Zhang L, Zheng J, Da Silva S. Multiplatform metabolomic interlaboratory study of a whole human stool candidate reference material from omnivore and vegan donors. Metabolomics 2024;20:125. [PMID: 39495321 PMCID: PMC11904883 DOI: 10.1007/s11306-024-02185-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/23/2024] [Accepted: 10/10/2024] [Indexed: 11/05/2024]
30
Cochran D, Takis PG, Alexander JL, Mullish BH, Powell N, Marchesi JR, Powers R. Evaluating protocols for reproducible targeted metabolomics by NMR. Analyst 2024;149:5423-5432. [PMID: 39377673 PMCID: PMC11587611 DOI: 10.1039/d4an01015a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/09/2024]
31
Zhang W, Zhao Y, Yang H, Liu Y, Zhang Y, Zhang Z, Li Y, Wang X, Xu Z, Deng J. Comparison analysis of bioactive metabolites in soybean, pea, mung bean, and common beans: reveal the potential variations of their antioxidant property. Food Chem 2024;457:140137. [PMID: 38908251 DOI: 10.1016/j.foodchem.2024.140137] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2024] [Revised: 05/27/2024] [Accepted: 06/14/2024] [Indexed: 06/24/2024]
32
Cochran D, NourEldein M, Bezdekova D, Schram A, Howard R, Powers R. A Reproducibility Crisis for Clinical Metabolomics Studies. Trends Analyt Chem 2024;180:117918. [PMID: 40236582 PMCID: PMC11999569 DOI: 10.1016/j.trac.2024.117918] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2025]
33
Montone CM, Cavaliere C, Cerrato A, Laganà A, Piovesana S, Taglioni E, Capriotti AL. Detailed lipid investigation of edible seaweeds by photochemical derivatization and untargeted lipidomics. Anal Bioanal Chem 2024;416:6269-6282. [PMID: 39392507 PMCID: PMC11541411 DOI: 10.1007/s00216-024-05573-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2024] [Revised: 09/16/2024] [Accepted: 09/24/2024] [Indexed: 10/12/2024]
34
Martínez S, Fernández-García M, Londoño-Osorio S, Barbas C, Gradillas A. Highly reliable LC-MS lipidomics database for efficient human plasma profiling based on NIST SRM 1950. J Lipid Res 2024;65:100671. [PMID: 39395790 DOI: 10.1016/j.jlr.2024.100671] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2024] [Revised: 10/04/2024] [Accepted: 10/07/2024] [Indexed: 10/14/2024]  Open
35
Lv Y, Xie X, Shi H, Guo Y. Differential serum metabolites in patients with pregnancy-associated venous thromboembolism analyzed using GC-MS/LC-MS untargeted metabolomics. Heliyon 2024;10:e38788. [PMID: 39497961 PMCID: PMC11532815 DOI: 10.1016/j.heliyon.2024.e38788] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2024] [Revised: 09/29/2024] [Accepted: 09/30/2024] [Indexed: 11/07/2024]  Open
36
Zhang J, Zang X, Jiao P, Wu J, Meng W, Zhao L, Lv Z. Alterations of Ceramides, Acylcarnitines, GlyceroLPLs, and Amines in NSCLC Tissues. J Proteome Res 2024;23:4343-4358. [PMID: 39317643 DOI: 10.1021/acs.jproteome.4c00344] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/26/2024]
37
Ren L, Shi L, Zheng Y. Reference Materials for Improving Reliability of Multiomics Profiling. PHENOMICS (CHAM, SWITZERLAND) 2024;4:487-521. [PMID: 39723231 PMCID: PMC11666855 DOI: 10.1007/s43657-023-00153-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Revised: 12/18/2023] [Accepted: 12/22/2023] [Indexed: 12/28/2024]
38
Dabbousy R, Rima M, Roufayel R, Rahal M, Legros C, Sabatier JM, Fajloun Z. Plant Metabolomics: The Future of Anticancer Drug Discovery. Pharmaceuticals (Basel) 2024;17:1307. [PMID: 39458949 PMCID: PMC11510165 DOI: 10.3390/ph17101307] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2024] [Revised: 09/19/2024] [Accepted: 09/25/2024] [Indexed: 10/28/2024]  Open
39
Grijseels S, Vasskog T, Heinsvig PJ, Myhre TN, Hansen T, Mardal M. Validation of two LCHRMS methods for large-scale untargeted metabolomics of serum samples: Strategy to establish method fitness-for-purpose. J Chromatogr A 2024;1732:465230. [PMID: 39142167 DOI: 10.1016/j.chroma.2024.465230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2024] [Revised: 07/22/2024] [Accepted: 08/06/2024] [Indexed: 08/16/2024]
40
Bhardwaj JK, Siwach A, Sachdeva SN. Metabolomics and cellular altered pathways in cancer biology: A review. J Biochem Mol Toxicol 2024;38:e23807. [PMID: 39148273 DOI: 10.1002/jbt.23807] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2024] [Revised: 07/16/2024] [Accepted: 08/01/2024] [Indexed: 08/17/2024]
41
Bielow C, Hoffmann N, Jimenez-Morales D, Van Den Bossche T, Vizcaíno JA, Tabb DL, Bittremieux W, Walzer M. Communicating Mass Spectrometry Quality Information in mzQC with Python, R, and Java. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2024;35:1875-1882. [PMID: 38918936 PMCID: PMC11311537 DOI: 10.1021/jasms.4c00174] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2024] [Revised: 06/07/2024] [Accepted: 06/11/2024] [Indexed: 06/27/2024]
42
Cochran D, Powers R. Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Applications for Metabolomics. Biomedicines 2024;12:1786. [PMID: 39200250 PMCID: PMC11351437 DOI: 10.3390/biomedicines12081786] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2024] [Revised: 07/26/2024] [Accepted: 08/02/2024] [Indexed: 09/02/2024]  Open
43
Bueschl C, Riquelme G, Zabalegui N, Rey MA, Monge ME. Tidy-Direct-to-MS: An Open-Source Data-Processing Pipeline for Direct Mass Spectrometry-Based Metabolomics Experiments. J Proteome Res 2024;23:3208-3216. [PMID: 38833568 DOI: 10.1021/acs.jproteome.3c00784] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2024]
44
Martínez S, Albóniga OE, López-Huertas MR, Gradillas A, Barbas C. Reinforcing the Evidence of Mitochondrial Dysfunction in Long COVID Patients Using a Multiplatform Mass Spectrometry-Based Metabolomics Approach. J Proteome Res 2024;23:3025-3040. [PMID: 38566450 DOI: 10.1021/acs.jproteome.3c00706] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/04/2024]
45
Day F, O'Sullivan J, Ramzan F, Pook C. Polar metabolomics using trichloroacetic acid extraction and porous graphitic carbon stationary phase. Metabolomics 2024;20:77. [PMID: 39014104 PMCID: PMC11252196 DOI: 10.1007/s11306-024-02146-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Accepted: 06/24/2024] [Indexed: 07/18/2024]
46
Lv X, Gao Z, Li B, Zhou W, Zhang S, Wang X. Mass spectrometry-based metabolomics for the investigation of antibiotic-bacterial interactions. MASS SPECTROMETRY REVIEWS 2024. [PMID: 39004897 DOI: 10.1002/mas.21899] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Revised: 06/14/2024] [Accepted: 07/02/2024] [Indexed: 07/16/2024]
47
Kumar N, Jaitak V. Recent Advancement in NMR Based Plant Metabolomics: Techniques, Tools, and Analytical Approaches. Crit Rev Anal Chem 2024:1-25. [PMID: 38990786 DOI: 10.1080/10408347.2024.2375314] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/13/2024]
48
Mitchell JM, Chi Y, Thapa M, Pang Z, Xia J, Li S. Common data models to streamline metabolomics processing and annotation, and implementation in a Python pipeline. PLoS Comput Biol 2024;20:e1011912. [PMID: 38843301 PMCID: PMC11185459 DOI: 10.1371/journal.pcbi.1011912] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2024] [Revised: 06/18/2024] [Accepted: 05/20/2024] [Indexed: 06/18/2024]  Open
49
Song Y, Yao S, Li X, Wang T, Jiang X, Bolan N, Warren CR, Northen TR, Chang SX. Soil metabolomics: Deciphering underground metabolic webs in terrestrial ecosystems. ECO-ENVIRONMENT & HEALTH 2024;3:227-237. [PMID: 38680731 PMCID: PMC11047296 DOI: 10.1016/j.eehl.2024.03.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Revised: 02/05/2024] [Accepted: 03/04/2024] [Indexed: 05/01/2024]
50
Szűcs Z, Cziáky Z, Volánszki L, Máthé C, Vasas G, Gonda S. Production of Polyphenolic Natural Products by Bract-Derived Tissue Cultures of Three Medicinal Tilia spp.: A Comparative Untargeted Metabolomics Study. PLANTS (BASEL, SWITZERLAND) 2024;13:1288. [PMID: 38794359 PMCID: PMC11124948 DOI: 10.3390/plants13101288] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2024] [Revised: 04/23/2024] [Accepted: 04/30/2024] [Indexed: 05/26/2024]
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