1
|
Meyer N, Torrent J, Balme S. Characterizing Prion-Like Protein Aggregation: Emerging Nanopore-Based Approaches. SMALL METHODS 2024:e2400058. [PMID: 38644684 DOI: 10.1002/smtd.202400058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2024] [Revised: 03/10/2024] [Indexed: 04/23/2024]
Abstract
Prion-like protein aggregation is characteristic of numerous neurodegenerative diseases, such as Alzheimer's and Parkinson's diseases. This process involves the formation of aggregates ranging from small and potentially neurotoxic oligomers to highly structured self-propagating amyloid fibrils. Various approaches are used to study protein aggregation, but they do not always provide continuous information on the polymorphic, transient, and heterogeneous species formed. This review provides an updated state-of-the-art approach to the detection and characterization of a wide range of protein aggregates using nanopore technology. For each type of nanopore, biological, solid-state polymer, and nanopipette, discuss the main achievements for the detection of protein aggregates as well as the significant contributions to the understanding of protein aggregation and diagnostics.
Collapse
Affiliation(s)
- Nathan Meyer
- Institut Européen des Membranes, UMR5635 University of Montpellier ENCSM CNRS, Place Eugène Bataillon, Cedex 5, Montpellier, 34095, France
- INM, University of Montpellier, INSERM, Montpellier, 34095, France
| | - Joan Torrent
- INM, University of Montpellier, INSERM, Montpellier, 34095, France
| | - Sébastien Balme
- Institut Européen des Membranes, UMR5635 University of Montpellier ENCSM CNRS, Place Eugène Bataillon, Cedex 5, Montpellier, 34095, France
| |
Collapse
|
2
|
Fang S, Zeng D, He S, Li Y, Pang Z, Wang Y, Liang L, Weng T, Xie W, Wang D. Fast Fabrication Nanopores on a PMMA Membrane by a Local High Electric Field Controlled Breakdown. SENSORS (BASEL, SWITZERLAND) 2024; 24:2109. [PMID: 38610321 PMCID: PMC11013984 DOI: 10.3390/s24072109] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2024] [Revised: 03/18/2024] [Accepted: 03/24/2024] [Indexed: 04/14/2024]
Abstract
The sensitivity and accuracy of nanopore sensors are severely hindered by the high noise associated with solid-state nanopores. To mitigate this issue, the deposition of organic polymer materials onto silicon nitride (SiNx) membranes has been effective in obtaining low-noise measurements. Nonetheless, the fabrication of nanopores sub-10 nm on thin polymer membranes remains a significant challenge. This work proposes a method for fabricating nanopores on polymethyl methacrylate (PMMA) membrane by the local high electrical field controlled breakdown, exploring the impact of voltage and current on the breakdown of PMMA membranes and discussing the mechanism underlying the breakdown voltage and current during the formation of nanopores. By improving the electric field application method, transient high electric fields that are one-seven times higher than the breakdown electric field can be utilized to fabricate nanopores. A comparative analysis was performed on the current noise levels of nanopores in PMMA-SiNx composite membranes and SiNx nanopores with a 5 nm diameter. The results demonstrated that the fast fabrication of nanopores on PMMA-SiNx membranes exhibited reduced current noise compared to SiNx nanopores. This finding provides evidence supporting the feasibility of utilizing this technology for efficiently fabricating low-noise nanopores on polymer composite membranes.
Collapse
Affiliation(s)
- Shaoxi Fang
- Chongqing Key Laboratory of Multi-Scale Manufacturing Technology, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing 400714, China; (S.F.); (S.H.); (Y.W.); (L.L.); (T.W.)
- Chongqing School, University of Chinese Academy of Sciences, Chongqing 400714, China
| | - Delin Zeng
- School of Optoelectronic Engineering, Chongqing University of Posts and Telecommunications, Chongqing 400065, China; (D.Z.); (Y.L.); (Z.P.)
| | - Shixuan He
- Chongqing Key Laboratory of Multi-Scale Manufacturing Technology, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing 400714, China; (S.F.); (S.H.); (Y.W.); (L.L.); (T.W.)
- Chongqing School, University of Chinese Academy of Sciences, Chongqing 400714, China
| | - Yadong Li
- School of Optoelectronic Engineering, Chongqing University of Posts and Telecommunications, Chongqing 400065, China; (D.Z.); (Y.L.); (Z.P.)
| | - Zichen Pang
- School of Optoelectronic Engineering, Chongqing University of Posts and Telecommunications, Chongqing 400065, China; (D.Z.); (Y.L.); (Z.P.)
| | - Yunjiao Wang
- Chongqing Key Laboratory of Multi-Scale Manufacturing Technology, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing 400714, China; (S.F.); (S.H.); (Y.W.); (L.L.); (T.W.)
- Chongqing School, University of Chinese Academy of Sciences, Chongqing 400714, China
| | - Liyuan Liang
- Chongqing Key Laboratory of Multi-Scale Manufacturing Technology, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing 400714, China; (S.F.); (S.H.); (Y.W.); (L.L.); (T.W.)
- Chongqing School, University of Chinese Academy of Sciences, Chongqing 400714, China
| | - Ting Weng
- Chongqing Key Laboratory of Multi-Scale Manufacturing Technology, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing 400714, China; (S.F.); (S.H.); (Y.W.); (L.L.); (T.W.)
- Chongqing School, University of Chinese Academy of Sciences, Chongqing 400714, China
| | - Wanyi Xie
- Chongqing Key Laboratory of Multi-Scale Manufacturing Technology, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing 400714, China; (S.F.); (S.H.); (Y.W.); (L.L.); (T.W.)
- Chongqing School, University of Chinese Academy of Sciences, Chongqing 400714, China
| | - Deqiang Wang
- Chongqing Key Laboratory of Multi-Scale Manufacturing Technology, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing 400714, China; (S.F.); (S.H.); (Y.W.); (L.L.); (T.W.)
- Chongqing School, University of Chinese Academy of Sciences, Chongqing 400714, China
- School of Optoelectronic Engineering, Chongqing University of Posts and Telecommunications, Chongqing 400065, China; (D.Z.); (Y.L.); (Z.P.)
| |
Collapse
|
3
|
Stanley J, Lohith A, Debiaso L, Wang K, Ton M, Cui W, Gu W, Fu A, Pourmand N. High throughput isolation of RNA from single-cells within an intact tissue for spatial and temporal sequencing a reality. PLoS One 2023; 18:e0289279. [PMID: 37527243 PMCID: PMC10393160 DOI: 10.1371/journal.pone.0289279] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2023] [Accepted: 07/16/2023] [Indexed: 08/03/2023] Open
Abstract
Single-cell transcriptomics is essential for understanding biological variability among cells in a heterogenous population. Acquiring high-quality single-cell sequencing data from a tissue sample has multiple challenges including isolation of individual cells as well as amplification of the genetic material. Commercially available techniques require the isolation of individual cells from a tissue through extensive manual manipulation before single cell sequence data can be acquired. However, since cells within a tissue have different dissociation constants, enzymatic and mechanical manipulation do not guarantee the isolation of a homogenous population of cells. To overcome this drawback, in this research we have developed a revolutionary approach that utilizes a fully automated nanopipette technology in combination with magnetic nanoparticles to obtain high quality sequencing reads from individual cells within an intact tissue thereby eliminating the need for manual manipulation and single cell isolation. With the proposed technology, it is possible to sample an individual cell within the tissue multiple times to obtain longitudinal information. Single-cell RNAseq was achieved by aspirating only1-5% of sub-single-cell RNA content from individual cells within fresh frozen tissue samples. As a proof of concept, aspiration was carried out from 22 cells within a breast cancer tissue slice using quartz nanopipettes. The mRNA from the aspirate was then selectively captured using magnetic nanoparticles. The RNAseq data from aspiration of 22 individual cells provided high alignment rates (80%) with 2 control tissue samples. The technology is exceptionally simple, quick and efficient as the entire cell targeting and aspiration process is fully automated.
Collapse
Affiliation(s)
- John Stanley
- Department of Biomolecular Engineering, University of California, Santa Cruz, California, United States of America
| | - Akshar Lohith
- Department of Biomolecular Engineering, University of California, Santa Cruz, California, United States of America
| | - Lucca Debiaso
- Department of Biomolecular Engineering, University of California, Santa Cruz, California, United States of America
| | - Kevan Wang
- NVIGEN Inc, Campbell, California, United States of America
| | - Minh Ton
- NVIGEN Inc, Campbell, California, United States of America
| | - Wenwu Cui
- NVIGEN Inc, Campbell, California, United States of America
| | - Weiwei Gu
- NVIGEN Inc, Campbell, California, United States of America
| | - Aihua Fu
- NVIGEN Inc, Campbell, California, United States of America
| | - Nader Pourmand
- Department of Biomolecular Engineering, University of California, Santa Cruz, California, United States of America
| |
Collapse
|
4
|
Xu X, Valavanis D, Ciocci P, Confederat S, Marcuccio F, Lemineur JF, Actis P, Kanoufi F, Unwin PR. The New Era of High-Throughput Nanoelectrochemistry. Anal Chem 2023; 95:319-356. [PMID: 36625121 PMCID: PMC9835065 DOI: 10.1021/acs.analchem.2c05105] [Citation(s) in RCA: 31] [Impact Index Per Article: 31.0] [Reference Citation Analysis] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Affiliation(s)
- Xiangdong Xu
- Department
of Chemistry, University of Warwick, Coventry CV4 7AL, U.K.
| | | | - Paolo Ciocci
- Université
Paris Cité, ITODYS, CNRS, F-75013 Paris, France
| | - Samuel Confederat
- School
of Electronic and Electrical Engineering and Pollard Institute, University of Leeds, Leeds LS2 9JT, U.K.,Bragg
Centre for Materials Research, University
of Leeds, Leeds LS2 9JT, U.K.
| | - Fabio Marcuccio
- School
of Electronic and Electrical Engineering and Pollard Institute, University of Leeds, Leeds LS2 9JT, U.K.,Bragg
Centre for Materials Research, University
of Leeds, Leeds LS2 9JT, U.K.,Faculty
of Medicine, Imperial College London, London SW7 2AZ, United Kingdom
| | | | - Paolo Actis
- School
of Electronic and Electrical Engineering and Pollard Institute, University of Leeds, Leeds LS2 9JT, U.K.,Bragg
Centre for Materials Research, University
of Leeds, Leeds LS2 9JT, U.K.,
| | | | - Patrick R. Unwin
- Department
of Chemistry, University of Warwick, Coventry CV4 7AL, U.K.,
| |
Collapse
|
5
|
Yu RJ, Hu YX, Chen KL, Gu Z, Ying YL, Long YT. Confined Nanopipet as a Versatile Tool for Precise Single Cell Manipulation. Anal Chem 2022; 94:12948-12953. [DOI: 10.1021/acs.analchem.2c02415] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Ru-Jia Yu
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, People’s Republic of China
- Chemistry and Biomedicine Innovation Center, Nanjing University, Nanjing 210023, People’s Republic of China
- School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai, 200237, People’s Republic of China
| | - Yong-Xu Hu
- School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai, 200237, People’s Republic of China
| | - Ke-Le Chen
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, People’s Republic of China
| | - Zhen Gu
- School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai, 200237, People’s Republic of China
| | - Yi-Lun Ying
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, People’s Republic of China
- Chemistry and Biomedicine Innovation Center, Nanjing University, Nanjing 210023, People’s Republic of China
| | - Yi-Tao Long
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, People’s Republic of China
| |
Collapse
|
6
|
Yang L, Hu J, Li MC, Xu M, Gu ZY. Solid-state nanopore: chemical modifications, interactions, and functionalities. Chem Asian J 2022; 17:e202200775. [PMID: 36071031 DOI: 10.1002/asia.202200775] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2022] [Revised: 09/06/2022] [Indexed: 11/08/2022]
Abstract
Nanopore technology is a burgeoning detection technology for single-molecular sensing and ion rectification. Solid-state nanopores have attracted more and more attention because of their higher stability and tunability than biological nanopores. However, solid-state nanopores still suffer the drawbacks of low signal-to-noise ratio and low resolution, which hinders their practical applications. Thus, developing operatical and useful methods to overcome the shortages of solid-state nanopores is urgently needed. Here, we summarize the recent research on nanopore modification to achieve this goal. Modifying solid-state nanopores with different coating molecules can improve the selectivity, sensitivity, and stability of nanopores. The modified molecules can introduce different functions into the nanopores, greatly expanding the applications of this novel detection technology. We hope that this review of nanopore modification will provide new ideas for this field.
Collapse
Affiliation(s)
- Lei Yang
- Nanjing Normal University, College of Chemistry and Materials Science, CHINA
| | - Jun Hu
- Nanjing Normal University, College of Chemistry and Materials Science, CHINA
| | - Min-Chao Li
- Nanjing Normal University, College of Chemistry and Materials Science, CHINA
| | - Ming Xu
- Nanjing Normal University, College of Chemistry and Materials Science, CHINA
| | - Zhi-Yuan Gu
- Nanjing Normal University, College of Chemistry and Materials Science, 1 Wenyuan Rd, 210023, Nanjing, CHINA
| |
Collapse
|
7
|
Nanodevices for Biological and Medical Applications: Development of Single-Molecule Electrical Measurement Method. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12031539] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
A comprehensive detection of a wide variety of diagnostic markers is required for the realization of personalized medicine. As a sensor to realize such personalized medicine, a single molecule electrical measurement method using nanodevices is currently attracting interest for its comprehensive simultaneous detection of various target markers for use in biological and medical application. Single-molecule electrical measurement using nanodevices, such as nanopore, nanogap, or nanopipette devices, has the following features:; high sensitivity, low-cost, high-throughput detection, easy-portability, low-cost availability by mass production technologies, and the possibility of integration of various functions and multiple sensors. In this review, I focus on the medical applications of single- molecule electrical measurement using nanodevices. This review provides information on the current status and future prospects of nanodevice-based single-molecule electrical measurement technology, which is making a full-scale contribution to realizing personalized medicine in the future. Future prospects include some discussion on of the current issues on the expansion of the application requirements for single-mole-cule measurement.
Collapse
|
8
|
Meyer N, Abrao-Nemeir I, Janot JM, Torrent J, Lepoitevin M, Balme S. Solid-state and polymer nanopores for protein sensing: A review. Adv Colloid Interface Sci 2021; 298:102561. [PMID: 34768135 DOI: 10.1016/j.cis.2021.102561] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2021] [Revised: 10/29/2021] [Accepted: 10/31/2021] [Indexed: 01/15/2023]
Abstract
In two decades, the solid state and polymer nanopores became attractive method for the protein sensing with high specificity and sensitivity. They also allow the characterization of conformational changes, unfolding, assembly and aggregation as well the following of enzymatic reaction. This review aims to provide an overview of the protein sensing regarding the technique of detection: the resistive pulse and ionic diodes. For each strategy, we report the most significant achievement regarding the detection of peptides and protein as well as the conformational change, protein-protein assembly and aggregation process. We discuss the limitations and the recent strategies to improve the nanopore resolution and accuracy. A focus is done about concomitant problematic such as protein adsorption and nanopore lifetime.
Collapse
|
9
|
Abstract
Scanning ion conductance microscopy (SICM) has emerged as a versatile tool for studies of interfaces in biology and materials science with notable utility in biophysical and electrochemical measurements. The heart of the SICM is a nanometer-scale electrolyte filled glass pipette that serves as a scanning probe. In the initial conception, manipulations of ion currents through the tip of the pipette and appropriate positioning hardware provided a route to recording micro- and nanoscopic mapping of the topography of surfaces. Subsequent advances in instrumentation, probe design, and methods significantly increased opportunities for SICM beyond recording topography. Hybridization of SICM with coincident characterization techniques such as optical microscopy and faradaic electrodes have brought SICM to the forefront as a tool for nanoscale chemical measurement for a wide range of applications. Modern approaches to SICM realize an important tool in analytical, bioanalytical, biophysical, and materials measurements, where significant opportunities remain for further exploration. In this review, we chronicle the development of SICM from the perspective of both the development of instrumentation and methods and the breadth of measurements performed.
Collapse
Affiliation(s)
- Cheng Zhu
- Department of Chemistry, Indiana University, 800 E. Kirkwood Avenue, Bloomington, Indiana 47405, United States
| | - Kaixiang Huang
- Department of Chemistry, Indiana University, 800 E. Kirkwood Avenue, Bloomington, Indiana 47405, United States
| | - Natasha P Siepser
- Department of Chemistry, Indiana University, 800 E. Kirkwood Avenue, Bloomington, Indiana 47405, United States
| | - Lane A Baker
- Department of Chemistry, Indiana University, 800 E. Kirkwood Avenue, Bloomington, Indiana 47405, United States
| |
Collapse
|
10
|
Cayón VM, Laucirica G, Toum Terrones Y, Cortez ML, Pérez-Mitta G, Shen J, Hess C, Toimil-Molares ME, Trautmann C, Marmisollé WA, Azzaroni O. Borate-driven ionic rectifiers based on sugar-bearing single nanochannels. NANOSCALE 2021; 13:11232-11241. [PMID: 34152340 DOI: 10.1039/d0nr07733j] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
Recently, much scientific effort has been centered on the control of the ionic transport properties of solid state nanochannels and the rational design and integration of chemical systems to induce changes in the ionic transport by means of interactions with selected target molecules. Here, we report the fabrication of a novel nanofluidic device based on solid-state nanochannels, which combines silane chemistry with both track-etched and atomic layer deposition (ALD) technologies. Nanodevice construction involves the coating of bullet-shaped single-pore nanochannels with silica (SiO2) by ALD and subsequent surface modification by reaction between silanol groups exposed on pore walls and N-(3-triethoxysilylpropyl)-gluconamide, in order to create a gluconamide-decorated nanochannel surface. The formation of a boroester derivative resulting from the selective reaction of borate with the appended saccharides leads to important changes in the surface charge density and, concomitantly, in the iontronic properties of the nanochannel. Furthermore, we propose a binding model to rationalize the specific interaction saccharide-borate in the surface. Besides, this unique nanodevice exhibits a highly selective and reversible response towards borate/fructose exposure. On the basis of the surface charge variation resulting from borate binding, the nanochannel can reversibly switch between "ON" and "OFF" states in the presence of borate and fructose, respectively. In addition, this work describes the first report of the functionalization of PET/SiO2 nanochannels by the ALD technique. We believe that this work provides a promising framework for the development of new nanochannel-based platforms suitable for multiple applications, such as water quality monitoring or directed molecular transport and separation.
Collapse
Affiliation(s)
- Vanina M Cayón
- Instituto de Investigaciones Fisicoquímicas Teóricas y Aplicadas (INIFTA), Departamento de Química, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, CONICET - CC 16 Suc. 4, 1900 La Plata, Argentina.
| | | | | | | | | | | | | | | | | | | | | |
Collapse
|
11
|
Nakatsuka N, Heard KJ, Faillétaz A, Momotenko D, Vörös J, Gage FH, Vadodaria KC. Sensing serotonin secreted from human serotonergic neurons using aptamer-modified nanopipettes. Mol Psychiatry 2021; 26:2753-2763. [PMID: 33767349 PMCID: PMC9997689 DOI: 10.1038/s41380-021-01066-5] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/09/2020] [Revised: 02/17/2021] [Accepted: 03/11/2021] [Indexed: 02/01/2023]
Abstract
The serotonergic system in the human brain modulates several physiological processes, and altered serotonergic neurotransmission has been implicated in the neuropathology of several psychiatric disorders. The study of serotonergic neurotransmission in psychiatry has long been restricted to animal models, but advances in cell reprogramming technology have enabled the generation of serotonergic neurons from patient-induced pluripotent stem cells (iPSCs). While iPSC-derived human serotonergic neurons offer the possibility to study serotonin (5-HT) release and uptake, particularly by 5-HT-modulating drugs such as selective serotonin reuptake inhibitors (SSRIs), a major limitation is the inability to reliably quantify 5-HT secreted from neurons in vitro. Herein, we address this technical gap via a novel sensing technology that couples 5-HT-specific DNA aptamers into nanopores (glass nanopipettes) with orifices of ~10 nm to detect 5-HT in complex neuronal culture medium with higher selectivity, sensitivity, and stability than existing methods. The 5-HT aptamers undergo conformational rearrangement upon target capture and serve as gatekeepers of ionic flux through the nanopipette opening. We generated human serotonergic neurons in vitro and detected secreted 5-HT using aptamer-coated nanopipettes in a low nanomolar range, with the possibility of detecting significantly lower (picomolar) concentrations. Furthermore, as a proof of concept, we treated human serotonergic neurons in vitro with the SSRI citalopram and detected a significant increase in extracellular 5-HT using the aptamer-modified nanopipettes. We demonstrate the utility of such methods for 5-HT detection, raising the possibility of fast quantification of neurotransmitters secreted from patient-derived live neuronal cells.
Collapse
Affiliation(s)
- Nako Nakatsuka
- Laboratory of Biosensors and Bioelectronics, Institute for Biomedical Engineering, ETH Zurich, Zurich, Switzerland
| | - Kelly J Heard
- Laboratory of Genetics, The Salk Institute for Biological Studies, La Jolla, CA, USA
| | - Alix Faillétaz
- Laboratory of Biosensors and Bioelectronics, Institute for Biomedical Engineering, ETH Zurich, Zurich, Switzerland
| | - Dmitry Momotenko
- Laboratory of Biosensors and Bioelectronics, Institute for Biomedical Engineering, ETH Zurich, Zurich, Switzerland
| | - János Vörös
- Laboratory of Biosensors and Bioelectronics, Institute for Biomedical Engineering, ETH Zurich, Zurich, Switzerland
| | - Fred H Gage
- Laboratory of Genetics, The Salk Institute for Biological Studies, La Jolla, CA, USA
| | - Krishna C Vadodaria
- Laboratory of Genetics, The Salk Institute for Biological Studies, La Jolla, CA, USA.
| |
Collapse
|
12
|
A ten-minute, single step, label-free, sample-to-answer assay for qualitative detection of cytokines in serum at femtomolar levels. Biomed Microdevices 2020; 22:73. [PMID: 33037941 DOI: 10.1007/s10544-020-00525-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/22/2020] [Indexed: 10/23/2022]
Abstract
Label-free electronic affinity based immuno-sensing is an attractive candidate as a platform technology for analyzing biomarkers due to the ease of miniaturization and minimal use of reagents. Electronic based sensing approaches, however, have lagged behind their optical counterparts in terms of detection limit, selectivity, and reliability. Also, the matrix dependent nature of electronic sensing modalities makes difficult the analysis of biomarkers in high salt concentration samples such as serum due to charge screening. We present a novel sensing platform, the micro-well sensor, that works by functionalizing nanoscale volume wells with antibodies and monitoring the impedance change inside the wells due binding of target protein. This detection modality is advantageous to many label-free electronic sensors in that signal power scales with increase in salt concentration, thus improving the sensitivity of the platform. We demonstrate rapid label-free qualitative detection of cytokines within ten minutes at femtoMolar concentrations and a dynamic range of 3 orders of magnitude in serum samples. We describe the design, fabrication, and characterization of the micro-well sensor in serum samples using inflammatory protein biomarkers.
Collapse
|
13
|
Rational design of DNA nanostructures for single molecule biosensing. Nat Commun 2020; 11:4384. [PMID: 32873796 PMCID: PMC7463249 DOI: 10.1038/s41467-020-18132-1] [Citation(s) in RCA: 66] [Impact Index Per Article: 16.5] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2020] [Accepted: 07/31/2020] [Indexed: 02/07/2023] Open
Abstract
The ability to detect low concentrations of biomarkers in patient samples is one of the cornerstones of modern healthcare. In general, biosensing approaches are based on measuring signals resulting from the interaction of a large ensemble of molecules with the sensor. Here, we report a biosensor platform using DNA origami featuring a central cavity with a target-specific DNA aptamer coupled with a nanopore read-out to enable individual biomarker detection. We show that the modulation of the ion current through the nanopore upon the DNA origami translocation strongly depends on the presence of the biomarker in the cavity. We exploit this to generate a biosensing platform with a limit of detection of 3 nM and capable of the detection of human C-reactive protein (CRP) in clinically relevant fluids. Future development of this approach may enable multiplexed biomarker detection by using ribbons of DNA origami with integrated barcoding.
Collapse
|
14
|
Chau C, Radford SE, Hewitt EW, Actis P. Macromolecular Crowding Enhances the Detection of DNA and Proteins by a Solid-State Nanopore. NANO LETTERS 2020; 20:5553-5561. [PMID: 32559088 PMCID: PMC7357865 DOI: 10.1021/acs.nanolett.0c02246] [Citation(s) in RCA: 58] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2020] [Revised: 06/18/2020] [Indexed: 05/19/2023]
Abstract
Nanopore analysis of nucleic acid is now routine, but detection of proteins remains challenging. Here, we report the systematic characterization of the effect of macromolecular crowding on the detection sensitivity of a solid-state nanopore for circular and linearized DNA plasmids, globular proteins (β-galactosidase), and filamentous proteins (α-synuclein amyloid fibrils). We observe a remarkable ca. 1000-fold increase in the molecule count for the globular protein β-galactosidase and a 6-fold increase in peak amplitude for plasmid DNA under crowded conditions. We also demonstrate that macromolecular crowding facilitates the study of the topology of DNA plasmids and the characterization of amyloid fibril preparations with different length distributions. A remarkable feature of this method is its ease of use; it simply requires the addition of a macromolecular crowding agent to the electrolyte. We therefore envision that macromolecular crowding can be applied to many applications in the analysis of biomolecules by solid-state nanopores.
Collapse
Affiliation(s)
- Chalmers
C. Chau
- School
of Molecular and Cellular Biology and Astbury Centre for Structural
Molecular Biology, University of Leeds, Leeds LS2 9JT, U.K.
- School
of Electronic and Electrical Engineering and Pollard Institute, University of Leeds, Leeds LS2 9JT, U.K.
| | - Sheena E. Radford
- School
of Molecular and Cellular Biology and Astbury Centre for Structural
Molecular Biology, University of Leeds, Leeds LS2 9JT, U.K.
| | - Eric W. Hewitt
- School
of Molecular and Cellular Biology and Astbury Centre for Structural
Molecular Biology, University of Leeds, Leeds LS2 9JT, U.K.
| | - Paolo Actis
- School
of Electronic and Electrical Engineering and Pollard Institute, University of Leeds, Leeds LS2 9JT, U.K.
| |
Collapse
|
15
|
Ying YL, Wang J, Leach AR, Jiang Y, Gao R, Xu C, Edwards MA, Pendergast AD, Ren H, Weatherly CKT, Wang W, Actis P, Mao L, White HS, Long YT. Single-entity electrochemistry at confined sensing interfaces. Sci China Chem 2020. [DOI: 10.1007/s11426-020-9716-2] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
|
16
|
Chang M, Morgan G, Bedier F, Chieng A, Gomez P, Raminani S, Wang Y. Review-Recent Advances in Nanosensors Built with Pre-Pulled Glass Nanopipettes and Their Applications in Chemical and Biological Sensing. JOURNAL OF THE ELECTROCHEMICAL SOCIETY 2020; 167:037533. [PMID: 34326553 PMCID: PMC8317590 DOI: 10.1149/1945-7111/ab64be] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Nanosensors built with pre-pulled glass nanopipettes, including bare or chemically modified nanopipettes and fully or partially filled solid nanoelectrodes, have found applications in chemical and biological sensing via resistive-pulse, current rectification, and electrochemical sensing. These nanosensors are easily fabricated and provide advantages through their needle-like geometry with nanometer-sized tips, making them highly sensitive and suitable for local measurements in extremely small samples. The variety in the geometry and layout have extended sensing capabilities. In this review, we will outline the fundamentals in fabrication, modification, and characterization of those pre-pulled glass nanopipette based nanosensors and highlight the most recent progress in their development and applications in real-time monitoring of biological processes, chemical ion sensing, and single entity analysis.
Collapse
|
17
|
Eggenberger OM, Ying C, Mayer M. Surface coatings for solid-state nanopores. NANOSCALE 2019; 11:19636-19657. [PMID: 31603455 DOI: 10.1039/c9nr05367k] [Citation(s) in RCA: 53] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Since their introduction in 2001, solid-state nanopores have been increasingly exploited for the detection and characterization of biomolecules ranging from single DNA strands to protein complexes. A major factor that enables the application of nanopores to the analysis and characterization of a broad range of macromolecules is the preparation of coatings on the pore wall to either prevent non-specific adhesion of molecules or to facilitate specific interactions of molecules of interest within the pore. Surface coatings can therefore be useful to minimize clogging of nanopores or to increase the residence time of target analytes in the pore. This review article describes various coatings and their utility for changing pore diameters, increasing the stability of nanopores, reducing non-specific interactions, manipulating surface charges, enabling interactions with specific target molecules, and reducing the noise of current recordings through nanopores. We compare the coating methods with respect to the ease of preparing the coating, the stability of the coating and the requirement for specialized equipment to prepare the coating.
Collapse
Affiliation(s)
- Olivia M Eggenberger
- Adolphe Merkle Institute, Chemin des Verdiers 4, University of Fribourg, Fribourg, Switzerland.
| | - Cuifeng Ying
- Adolphe Merkle Institute, Chemin des Verdiers 4, University of Fribourg, Fribourg, Switzerland.
| | - Michael Mayer
- Adolphe Merkle Institute, Chemin des Verdiers 4, University of Fribourg, Fribourg, Switzerland.
| |
Collapse
|
18
|
|
19
|
Laucirica G, Marmisollé WA, Toimil-Molares ME, Trautmann C, Azzaroni O. Redox-Driven Reversible Gating of Solid-State Nanochannels. ACS APPLIED MATERIALS & INTERFACES 2019; 11:30001-30009. [PMID: 31335118 DOI: 10.1021/acsami.9b05961] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
The design of an electrochemically addressable nanofluidic diode is proposed, which allows tunable and nanofluidic operations via redox gating under electrochemical control. The fabrication process involves the modification of an asymmetric gold-coated solid-state nanopore with a thin layer of a redox polymer, poly(vinylferrocene) (PVFc). The composite nanochannel acts as a gate electrode by changing the electrochemical state and, consequently, the conversion/switching of ferrocene into ferricenium units upon the application of different voltages. It is shown that the electrochemical input accurately controls the surface charge density of the nanochannel walls with a predictable concomitant effect on the rectification properties. PVFc-based nanofluidic devices are able to discriminate the passage of anionic species through the nanochannel in a qualitative and quantitative manner by simply switching the redox potential of the PVFc layer. Experimental data confirmed that a rapid and reversible modulation of the ionic transport regimes can be easily attained by changing the applied potential. This applied potential plays the role of the gate voltage (Vg) in field-effect transistors (FET), so these nanofluidic channels behave as ionic FETs. Depending on the Vg values, the iontronic behavior can be switched between ohmic and diode-like regimes. We believe that this system illustrates the potential of redox-active polymers integrated into nanofluidic devices as plausible, simple, and versatile platforms to create electrochemically addressable nanofluidic devices for multiple applications.
Collapse
Affiliation(s)
- Gregorio Laucirica
- Instituto de Investigaciones Fisicoquímicas Teóricas y Aplicadas (INIFTA), Departamento de Química, Facultad de Ciencias Exactas , Universidad Nacional de La Plata (UNLP), CONICET , 64 y Diagonal 113 , 1900 La Plata , Argentina
| | - Waldemar A Marmisollé
- Instituto de Investigaciones Fisicoquímicas Teóricas y Aplicadas (INIFTA), Departamento de Química, Facultad de Ciencias Exactas , Universidad Nacional de La Plata (UNLP), CONICET , 64 y Diagonal 113 , 1900 La Plata , Argentina
| | | | - Christina Trautmann
- GSI Helmholtzzentrum für Schwerionenforschung , 64291 Darmstadt , Germany
- Technische Universität Darmstadt, Material-Wissenschaft , 64287 Darmstadt , Germany
| | - Omar Azzaroni
- Instituto de Investigaciones Fisicoquímicas Teóricas y Aplicadas (INIFTA), Departamento de Química, Facultad de Ciencias Exactas , Universidad Nacional de La Plata (UNLP), CONICET , 64 y Diagonal 113 , 1900 La Plata , Argentina
| |
Collapse
|
20
|
Facile Fabrication of Gold Functionalized Nanopipette for Nanoscale Electrochemistry and Surface Enhanced Raman Spectroscopy. CHINESE JOURNAL OF ANALYTICAL CHEMISTRY 2019. [DOI: 10.1016/s1872-2040(19)61177-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
|
21
|
Nanostraw membrane stamping for direct delivery of molecules into adhesive cells. Sci Rep 2019; 9:6806. [PMID: 31048793 PMCID: PMC6497648 DOI: 10.1038/s41598-019-43340-1] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2018] [Accepted: 04/18/2019] [Indexed: 01/23/2023] Open
Abstract
Delivering ions and molecules into living cells has become an important challenge in medical and biological fields. Conventional molecular delivery, however, has several issues such as physical and chemical damage to biological cells. Here, we present a method of directly delivering molecules into adhesive cells with an Au-based nanostraw membrane stamp that can physically inject a target molecule into the cytoplasm through a nanostraw duct. We successfully delivered calcein target molecules into adhesive cells with high efficiency (85%) and viability (90%). Furthermore, we modeled the molecular flow through Au nanostraws and then demonstrated the control of calcein flow by changing the concentration and geometry of Au nanostraws. Our Au membrane stamping provides a new way of accessing the cytoplasm to modulate cellular functions via injected molecules.
Collapse
|
22
|
Yu R, Ying Y, Gao R, Long Y. Confined Nanopipette Sensing: From Single Molecules, Single Nanoparticles, to Single Cells. Angew Chem Int Ed Engl 2019; 58:3706-3714. [DOI: 10.1002/anie.201803229] [Citation(s) in RCA: 129] [Impact Index Per Article: 25.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2018] [Revised: 05/25/2018] [Indexed: 01/09/2023]
Affiliation(s)
- Ru‐Jia Yu
- Key Laboratory for Advanced MaterialsSchool of Chemistry & Molecular EngineeringEast China University of Science and Technology Shanghai 200237 P. R. China
| | - Yi‐Lun Ying
- Key Laboratory for Advanced MaterialsSchool of Chemistry & Molecular EngineeringEast China University of Science and Technology Shanghai 200237 P. R. China
| | - Rui Gao
- Key Laboratory for Advanced MaterialsSchool of Chemistry & Molecular EngineeringEast China University of Science and Technology Shanghai 200237 P. R. China
| | - Yi‐Tao Long
- Key Laboratory for Advanced MaterialsSchool of Chemistry & Molecular EngineeringEast China University of Science and Technology Shanghai 200237 P. R. China
| |
Collapse
|
23
|
Yu R, Ying Y, Gao R, Long Y. Detektieren mit Nanopipetten im eingeschränkten Raum: von einzelnen Molekülen über Nanopartikel hin zu der Zelle. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201803229] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Ru‐Jia Yu
- Key Laboratory for Advanced MaterialsSchool of Chemistry & Molecular EngineeringEast China University of Science and Technology Shanghai 200237 VR China
| | - Yi‐Lun Ying
- Key Laboratory for Advanced MaterialsSchool of Chemistry & Molecular EngineeringEast China University of Science and Technology Shanghai 200237 VR China
| | - Rui Gao
- Key Laboratory for Advanced MaterialsSchool of Chemistry & Molecular EngineeringEast China University of Science and Technology Shanghai 200237 VR China
| | - Yi‐Tao Long
- Key Laboratory for Advanced MaterialsSchool of Chemistry & Molecular EngineeringEast China University of Science and Technology Shanghai 200237 VR China
| |
Collapse
|
24
|
Neves MMPDS, Martín-Yerga D. Advanced Nanoscale Approaches to Single-(Bio)entity Sensing and Imaging. BIOSENSORS 2018; 8:E100. [PMID: 30373209 PMCID: PMC6316691 DOI: 10.3390/bios8040100] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/15/2018] [Revised: 10/11/2018] [Accepted: 10/23/2018] [Indexed: 01/01/2023]
Abstract
Individual (bio)chemical entities could show a very heterogeneous behaviour under the same conditions that could be relevant in many biological processes of significance in the life sciences. Conventional detection approaches are only able to detect the average response of an ensemble of entities and assume that all entities are identical. From this perspective, important information about the heterogeneities or rare (stochastic) events happening in individual entities would remain unseen. Some nanoscale tools present interesting physicochemical properties that enable the possibility to detect systems at the single-entity level, acquiring richer information than conventional methods. In this review, we introduce the foundations and the latest advances of several nanoscale approaches to sensing and imaging individual (bio)entities using nanoprobes, nanopores, nanoimpacts, nanoplasmonics and nanomachines. Several (bio)entities such as cells, proteins, nucleic acids, vesicles and viruses are specifically considered. These nanoscale approaches provide a wide and complete toolbox for the study of many biological systems at the single-entity level.
Collapse
Affiliation(s)
| | - Daniel Martín-Yerga
- Department of Chemical Engineering, KTH Royal Institute of Technology, 100-44 Stockholm, Sweden.
| |
Collapse
|
25
|
Hu YX, Ying YL, Gao R, Yu RJ, Long YT. Characterization of the Dynamic Growth of the Nanobubble within the Confined Glass Nanopore. Anal Chem 2018; 90:12352-12355. [DOI: 10.1021/acs.analchem.8b03923] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Yong-Xu Hu
- Key Laboratory for Advanced Materials & School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai 200237, P. R. China
| | - Yi-Lun Ying
- Key Laboratory for Advanced Materials & School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai 200237, P. R. China
| | - Rui Gao
- Key Laboratory for Advanced Materials & School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai 200237, P. R. China
| | - Ru-Jia Yu
- Key Laboratory for Advanced Materials & School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai 200237, P. R. China
| | - Yi-Tao Long
- Key Laboratory for Advanced Materials & School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai 200237, P. R. China
| |
Collapse
|
26
|
Affiliation(s)
- Mukhil Raveendran
- Pollard Institute School of Electronic and Electrical EngineeringUniversity of Leeds Leeds United Kingdom
| | - Andrew J. Lee
- Pollard Institute School of Electronic and Electrical EngineeringUniversity of Leeds Leeds United Kingdom
| | - Christoph Wälti
- Pollard Institute School of Electronic and Electrical EngineeringUniversity of Leeds Leeds United Kingdom
| | - Paolo Actis
- Pollard Institute School of Electronic and Electrical EngineeringUniversity of Leeds Leeds United Kingdom
| |
Collapse
|
27
|
Ozel RE, Bulbul G, Perez J, Pourmand N. Functionalized Quartz Nanopipette for Intracellular Superoxide Sensing: A Tool for Monitoring Reactive Oxygen Species Levels in Single Living Cell. ACS Sens 2018; 3:1316-1321. [PMID: 29893547 DOI: 10.1021/acssensors.8b00185] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Reactive oxygen species (ROS), including superoxide radical anions, are vital components in numerous biological functions, including cell signaling and immune responses. Since ROS react with other biomolecules and oxidize them quickly, it is essential for cells to have superoxide-scavenging enzymes and other regulating enzymes that can catalyze the dismutation of superoxide radical anions into less damaging molecules. Otherwise, ROS overproduction can cause oxidative damage to DNA, proteins, cells, and tissues, damage that is associated with the pathogenesis of a range of neurodegenerative disorders, age-related diseases, and cancer. Understanding the relationship between superoxide and these disorders can help the development of innovative therapies for combating oxidative stress and degeneration of nerve cells. Although methods to quantify ROS already exist, they are indirect, destructive, ambiguous, and/or cannot provide real-time measurements in single cells. In this paper, we report a technique for sensing superoxide radical anions in single living cells using functionalized nanopipettes. These nanopipettes allow us to enter the cell as we measure intracellular ROS concentrations over time. We observed that these devices provide precise real-time measurements that are accurate and not possible to obtain with other conventional techniques.
Collapse
Affiliation(s)
- Rıfat Emrah Ozel
- Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, California 95064, United States
| | - Gonca Bulbul
- Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, California 95064, United States
| | - Joanna Perez
- Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, California 95064, United States
| | - Nader Pourmand
- Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, California 95064, United States
| |
Collapse
|
28
|
Bulbul G, Chaves G, Olivier J, Ozel RE, Pourmand N. Nanopipettes as Monitoring Probes for the Single Living Cell: State of the Art and Future Directions in Molecular Biology. Cells 2018; 7:E55. [PMID: 29882813 PMCID: PMC6024992 DOI: 10.3390/cells7060055] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2018] [Revised: 06/01/2018] [Accepted: 06/05/2018] [Indexed: 02/07/2023] Open
Abstract
Examining the behavior of a single cell within its natural environment is valuable for understanding both the biological processes that control the function of cells and how injury or disease lead to pathological change of their function. Single-cell analysis can reveal information regarding the causes of genetic changes, and it can contribute to studies on the molecular basis of cell transformation and proliferation. By contrast, whole tissue biopsies can only yield information on a statistical average of several processes occurring in a population of different cells. Electrowetting within a nanopipette provides a nanobiopsy platform for the extraction of cellular material from single living cells. Additionally, functionalized nanopipette sensing probes can differentiate analytes based on their size, shape or charge density, making the technology uniquely suited to sensing changes in single-cell dynamics. In this review, we highlight the potential of nanopipette technology as a non-destructive analytical tool to monitor single living cells, with particular attention to integration into applications in molecular biology.
Collapse
Affiliation(s)
- Gonca Bulbul
- Department of Biomolecular Engineering, University of California, Santa Cruz, CA 95064, USA.
| | - Gepoliano Chaves
- Department of Biomolecular Engineering, University of California, Santa Cruz, CA 95064, USA.
| | - Joseph Olivier
- Department of Biomolecular Engineering, University of California, Santa Cruz, CA 95064, USA.
| | - Rifat Emrah Ozel
- Department of Biomolecular Engineering, University of California, Santa Cruz, CA 95064, USA.
| | - Nader Pourmand
- Department of Biomolecular Engineering, University of California, Santa Cruz, CA 95064, USA.
| |
Collapse
|
29
|
Advances and Perspectives in Chemical Imaging in Cellular Environments Using Electrochemical Methods. CHEMOSENSORS 2018. [DOI: 10.3390/chemosensors6020024] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
|
30
|
Novel method for rapid toxicity screening of magnetic nanoparticles. Sci Rep 2018; 8:7462. [PMID: 29748550 PMCID: PMC5945642 DOI: 10.1038/s41598-018-25852-4] [Citation(s) in RCA: 53] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2018] [Accepted: 04/30/2018] [Indexed: 01/06/2023] Open
Abstract
Iron oxide nanoparticles have attracted a great deal of research interest and have been widely used in bioscience and clinical research including as contrast agents for magnetic resonance imaging, hyperthermia and magnetic field assisted radionuclide therapy. It is therefore important to develop methods, which can provide high-throughput screening of biological responses that can predict toxicity. The use of nanoelectrodes for single cell analysis can play a vital role in this process by providing relatively fast, comprehensive, and cost-effective assessment of cellular responses. We have developed a new method for in vitro study of the toxicity of magnetic nanoparticles (NP) based on the measurement of intracellular reactive oxygen species (ROS) by a novel nanoelectrode. Previous studies have suggested that ROS generation is frequently observed with NP toxicity. We have developed a stable probe for measuring intracellular ROS using platinized carbon nanoelectrodes with a cavity on the tip integrated into a micromanipulator on an upright microscope. Our results show a significant difference for intracellular levels of ROS measured in HEK293 and LNCaP cancer cells before and after exposure to 10 nm size iron oxide NP. These results are markedly different from ROS measured after cell incubation with the same concentration of NP using standard methods where no differences have been detected. In summary we have developed a label-free method for assessing nanoparticle toxicity using the rapid (less than 30 minutes) measurement of ROS with a novel nanoelectrode.
Collapse
|
31
|
Pérez-Mitta G, Marmisollé WA, Albesa AG, Toimil-Molares ME, Trautmann C, Azzaroni O. Phosphate-Responsive Biomimetic Nanofluidic Diodes Regulated by Polyamine-Phosphate Interactions: Insights into Their Functional Behavior from Theory and Experiment. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2018; 14:e1702131. [PMID: 29024459 DOI: 10.1002/smll.201702131] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2017] [Revised: 08/09/2017] [Indexed: 05/12/2023]
Abstract
There is currently high interest in developing nanofluidic devices whose iontronic output is defined by biological interactions. The fabrication of a phosphate responsive nanofluidic diode by using the biological relevant amine-phosphate interactions is shown. The fabrication procedure includes the modification of a track-etched asymmetric (conical) nanochannel with polyallylamine (PAH) by electrostatic self-assembly. PAH is the arcaetypical model of polyamine and it is further used to address the nanochannels with phosphate responsivity. In order to explore the influence that phosphate in solution has in the conductance of the modified nanochannels, current-voltage measurements using different concentrations of phosphates are performed. Furthermore, to have a complete physicochemical understanding of the system, experimental data is analyzed using a continuous model based on Poison-Nernst-Planck equations and compared with results obtained from stochastic Monte Carlo simulations.
Collapse
Affiliation(s)
- Gonzalo Pérez-Mitta
- Instituto de Investigaciones Fisicoquímicas Teóricas y Aplicadas (INIFTA), Departamento de Química, Facultad de Ciencias Exactas, Universidad Nacional de La Plata (UNLP), CONICET, Boulevard 113 y 64, 1900, La Plata, Argentina
| | - Waldemar A Marmisollé
- Instituto de Investigaciones Fisicoquímicas Teóricas y Aplicadas (INIFTA), Departamento de Química, Facultad de Ciencias Exactas, Universidad Nacional de La Plata (UNLP), CONICET, Boulevard 113 y 64, 1900, La Plata, Argentina
| | - Alberto G Albesa
- Instituto de Investigaciones Fisicoquímicas Teóricas y Aplicadas (INIFTA), Departamento de Química, Facultad de Ciencias Exactas, Universidad Nacional de La Plata (UNLP), CONICET, Boulevard 113 y 64, 1900, La Plata, Argentina
| | | | - Christina Trautmann
- GSI Helmholtzzentrum, 64291, Darmstadt, Germany
- Technische Universität Darmstadt, 64287, Darmstadt, Germany
| | - Omar Azzaroni
- Instituto de Investigaciones Fisicoquímicas Teóricas y Aplicadas (INIFTA), Departamento de Química, Facultad de Ciencias Exactas, Universidad Nacional de La Plata (UNLP), CONICET, Boulevard 113 y 64, 1900, La Plata, Argentina
| |
Collapse
|
32
|
Lin X, Ivanov AP, Edel JB. Selective single molecule nanopore sensing of proteins using DNA aptamer-functionalised gold nanoparticles. Chem Sci 2017; 8:3905-3912. [PMID: 28626560 PMCID: PMC5465561 DOI: 10.1039/c7sc00415j] [Citation(s) in RCA: 80] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2017] [Accepted: 03/14/2017] [Indexed: 01/26/2023] Open
Abstract
Single molecule detection methods, such as nanopore sensors have found increasing importance in applications ranging from gaining a better understanding of biophysical processes to technology driven solutions such as DNA sequencing. However, challenges remain especially in relation to improving selectivity to probe specific targets or to alternatively enable detection of smaller molecules such as small-sized proteins with a sufficiently high signal-to-noise ratio. In this article, we propose a solution to these technological challenges by using DNA aptamer-modified gold nanoparticles (AuNPs) that act as a molecular carrier through the nanopore sensor. We show that this approach offers numerous advantages including: high levels of selectivity, efficient capture from a complex mixture, enhanced signal, minimized analyte-sensor surface interactions, and finally can be used to enhance the event detection rate. This is demonstrated by incorporating a lysozyme binding aptamer to a 5 nm AuNP carrier to selectively probe lysozyme within a cocktail of proteins. We show that nanopores can reveal sub-complex molecular information, by discriminating the AuNP from the protein analyte, indicating the potential use of this technology for single molecule analysis of different molecular analytes specifically bound to AuNP.
Collapse
Affiliation(s)
- Xiaoyan Lin
- Department of Chemistry , Imperial College London , South Kensington , London SW7 2AZ , UK . ;
| | - Aleksandar P Ivanov
- Department of Chemistry , Imperial College London , South Kensington , London SW7 2AZ , UK . ;
| | - Joshua B Edel
- Department of Chemistry , Imperial College London , South Kensington , London SW7 2AZ , UK . ;
| |
Collapse
|
33
|
Wang Y, Wang D, Mirkin MV. Resistive-pulse and rectification sensing with glass and carbon nanopipettes. Proc Math Phys Eng Sci 2017; 473:20160931. [PMID: 28413354 DOI: 10.1098/rspa.2016.0931] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2016] [Accepted: 02/08/2017] [Indexed: 11/12/2022] Open
Abstract
Along with more prevalent solid-state nanopores, glass or quartz nanopipettes have found applications in resistive-pulse and rectification sensing. Their advantages include the ease of fabrication, small physical size and needle-like geometry, rendering them useful for local measurements in small spaces and delivery of nanoparticles/biomolecules. Carbon nanopipettes fabricated by depositing a thin carbon layer on the inner wall of a quartz pipette provide additional means for detecting electroactive species and fine-tuning the current rectification properties. In this paper, we discuss the fundamentals of resistive-pulse sensing with nanopipettes and our recent studies of current rectification in carbon pipettes.
Collapse
Affiliation(s)
- Yixian Wang
- Department of Chemistry and Biochemistry, California State University, Los Angeles, CA 90032, USA
| | - Dengchao Wang
- Department of Chemistry and Biochemistry, Queens College, City University of New York, Flushing, NY 11367, USA
| | - Michael V Mirkin
- Department of Chemistry and Biochemistry, Queens College, City University of New York, Flushing, NY 11367, USA
| |
Collapse
|
34
|
Pérez-Mitta G, Albesa AG, Trautmann C, Toimil-Molares ME, Azzaroni O. Bioinspired integrated nanosystems based on solid-state nanopores: " iontronic" transduction of biological, chemical and physical stimuli. Chem Sci 2017; 8:890-913. [PMID: 28572900 PMCID: PMC5452273 DOI: 10.1039/c6sc04255d] [Citation(s) in RCA: 91] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2016] [Accepted: 10/25/2016] [Indexed: 12/17/2022] Open
Abstract
The ability of living systems to respond to stimuli and process information has encouraged scientists to develop integrated nanosystems displaying similar functions and capabilities. In this regard, biological pores have been a source of inspiration due to their exquisite control over the transport of ions within cells, a feature that ultimately plays a major role in multiple physiological processes, e.g. transduction of physical stimuli into nervous signals. Developing abiotic nanopores, which respond to certain chemical, biological or physical inputs producing "iontronic" signals, is now a reality thanks to the combination of "soft" surface science with nanofabrication techniques. The interplay between the functional richness of predesigned molecular components and the remarkable physical characteristics of nanopores plays a critical role in the rational integration of molecular functions into nanopore environments, permitting us to envisage nanopore-based biomimetic integrated nanosystems that respond to a variety of external stimuli such as pH, redox potential, molecule concentration, temperature, or light. Transduction of these stimuli into a predefined "iontronic" response can be amplified by exploiting nanoconfinement and physico-chemical effects such as charge distribution, steric constraints, equilibria displacement, or local changes in ionic concentration, to name but a few examples. While in past decades the focus has been mostly on their fundamental aspects and the in-depth study of their interesting transport properties, for several years now nanopore research has started to shift towards specific practical applications. This work is dedicated to bringing together the latest developments in the use of nanopores as "iontronic" transducing elements. Our aim is to show the wide potential of abiotic nanopores in sensing and signal transduction and also to promote the potential of this technology among doctoral students, postdocs, and researchers. We believe that even a casual reader of this perspective will not fail to be impressed by the wealth of opportunities that solid-state nanopores can offer to the transduction of biological, physical and chemical stimuli.
Collapse
Affiliation(s)
- Gonzalo Pérez-Mitta
- Instituto de Investigaciones Fisicoquímicas Teóricas y Aplicadas (INIFTA) , Universidad Nacional de La Plata , CONICET , CC. 16 Suc. 4 , 1900 La Plata , Argentina .
| | - Alberto G Albesa
- Instituto de Investigaciones Fisicoquímicas Teóricas y Aplicadas (INIFTA) , Universidad Nacional de La Plata , CONICET , CC. 16 Suc. 4 , 1900 La Plata , Argentina .
| | - Christina Trautmann
- GSI Helmholtzzentrum für Schwerionenforschung , Darmstadt , Germany
- Technische Universität Darmstadt , Darmstadt , Germany
| | | | - Omar Azzaroni
- Instituto de Investigaciones Fisicoquímicas Teóricas y Aplicadas (INIFTA) , Universidad Nacional de La Plata , CONICET , CC. 16 Suc. 4 , 1900 La Plata , Argentina .
| |
Collapse
|
35
|
Saha-Shah A, Green CM, Abraham DH, Baker LA. Segmented flow sampling with push-pull theta pipettes. Analyst 2017; 141:1958-65. [PMID: 26907673 DOI: 10.1039/c6an00028b] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
We report development of a mobile and easy-to-fabricate theta pipette microfluidic device for segmented flow sampling. The theta pipettes were also used as electrospray emitters for analysis of sub-nanoliter segments, which resulted in delivery of analyte to the vacuum inlet of the mass spectrometer without multiple transfer steps. Theta pipette probes enable sample collection with high spatial resolution due to micron or smaller sized probe inlets and can be used to manipulate aqueous segments in the range of 200 pL to tens of nanoliters. Optimized conditions can enable sampling with high spatial and temporal resolution, suitable for chemical monitoring in biological samples and studies of sample heterogeneity. Intercellular heterogeneity among Allium cepa cells was studied by collecting cytoplasm from multiple cells using a single probe. Extracted cytoplasm was analyzed in a fast and high throughput manner by direct electrospray mass spectrometry of segmented sample from the probe tip.
Collapse
Affiliation(s)
- Anumita Saha-Shah
- Department of Chemistry, Indiana University, 800 E. Kirkwood Avenue, Bloomington, IN 47405, USA.
| | - Curtis M Green
- Department of Chemistry, Indiana University, 800 E. Kirkwood Avenue, Bloomington, IN 47405, USA.
| | - David H Abraham
- Department of Chemistry, Indiana University, 800 E. Kirkwood Avenue, Bloomington, IN 47405, USA.
| | - Lane A Baker
- Department of Chemistry, Indiana University, 800 E. Kirkwood Avenue, Bloomington, IN 47405, USA.
| |
Collapse
|
36
|
Perry D, Parker AS, Page A, Unwin PR. Electrochemical Control of Calcium Carbonate Crystallization and Dissolution in Nanopipettes. ChemElectroChem 2016. [DOI: 10.1002/celc.201600547] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- David Perry
- Department of Chemistry; University of Warwick; Gibbet Hill Road Coventry CV4 7AL UK
- MOAC Doctoral Training Centre; University of Warwick; Gibbet Hill Road Coventry CV4 7AL UK
| | - Alexander S. Parker
- Department of Chemistry; University of Warwick; Gibbet Hill Road Coventry CV4 7AL UK
| | - Ashley Page
- Department of Chemistry; University of Warwick; Gibbet Hill Road Coventry CV4 7AL UK
- MOAC Doctoral Training Centre; University of Warwick; Gibbet Hill Road Coventry CV4 7AL UK
| | - Patrick R. Unwin
- Department of Chemistry; University of Warwick; Gibbet Hill Road Coventry CV4 7AL UK
| |
Collapse
|
37
|
Pérez-Mitta G, Albesa AG, Toimil Molares ME, Trautmann C, Azzaroni O. The Influence of Divalent Anions on the Rectification Properties of Nanofluidic Diodes: Insights from Experiments and Theoretical Simulations. Chemphyschem 2016; 17:2718-25. [DOI: 10.1002/cphc.201600370] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2016] [Indexed: 11/12/2022]
Affiliation(s)
- Gonzalo Pérez-Mitta
- Instituto de Investigaciones Fisicoquímicas Teóricas y Aplicadas (INIFTA); Departamento de Química, Facultad de Ciencias Exactas; Universidad Nacional de La Plata, CONICET; Boulevard 113 y 64, Suc. 4 C.C. 16 1900 La Plata Argentina
| | - Alberto G. Albesa
- Instituto de Investigaciones Fisicoquímicas Teóricas y Aplicadas (INIFTA); Departamento de Química, Facultad de Ciencias Exactas; Universidad Nacional de La Plata, CONICET; Boulevard 113 y 64, Suc. 4 C.C. 16 1900 La Plata Argentina
| | | | - Christina Trautmann
- GSI Helmholtzzentrum für Schwerionenforschung; Darmstadt Germany
- Technische Universität Darmstadt; Darmstadt Germany
| | - Omar Azzaroni
- Instituto de Investigaciones Fisicoquímicas Teóricas y Aplicadas (INIFTA); Departamento de Química, Facultad de Ciencias Exactas; Universidad Nacional de La Plata, CONICET; Boulevard 113 y 64, Suc. 4 C.C. 16 1900 La Plata Argentina
| |
Collapse
|
38
|
Affiliation(s)
- David Perry
- Department of Chemistry and ‡MOAC Doctoral Training Centre, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Dmitry Momotenko
- Department of Chemistry and ‡MOAC Doctoral Training Centre, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Robert A. Lazenby
- Department of Chemistry and ‡MOAC Doctoral Training Centre, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Minkyung Kang
- Department of Chemistry and ‡MOAC Doctoral Training Centre, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Patrick R. Unwin
- Department of Chemistry and ‡MOAC Doctoral Training Centre, University of Warwick, Coventry CV4 7AL, United Kingdom
| |
Collapse
|
39
|
Characterization of tip size and geometry of the pipettes used in scanning ion conductance microscopy. Micron 2016; 83:11-8. [DOI: 10.1016/j.micron.2016.01.002] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2015] [Revised: 01/05/2016] [Accepted: 01/12/2016] [Indexed: 11/20/2022]
|
40
|
Özel RE, Kahnemouyi S, Fan H, Mak WH, Lohith A, Seger A, Teodorescu M, Pourmand N. Smartphone Operated Signal Transduction by Ion Nanogating (STING) Amplifier for Nanopore Sensors: Design and Analytical Application. ACS Sens 2016; 1:265-271. [PMID: 27602408 DOI: 10.1021/acssensors.5b00289] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
In this report, we demonstrated a handheld wireless voltage-clamp amplifier for current measurement of nanopore sensors. This amplifier interfaces a sensing probe and connects wirelessly with a computer or smartphone for the required stimulus input, data processing and storage. To test the proposed Signal Transduction by Ion Nanogating (STING) wireless amplifier, in the current study the system was tested with a nano-pH sensor to measure pH of standard buffer solutions and the performance was compared against the commercial voltage-clamp amplifier. To our best knowledge, STING amplifier is the first miniaturized wireless voltage-clamp platform operated with a customized smart-phone application (app).
Collapse
Affiliation(s)
- Rıfat Emrah Özel
- Biomolecular Engineering Department and ‡Computer Engineering Department, University of California, Santa Cruz, Santa Cruz, California 95064, United States
| | - Sina Kahnemouyi
- Biomolecular Engineering Department and ‡Computer Engineering Department, University of California, Santa Cruz, Santa Cruz, California 95064, United States
| | - Hsinwen Fan
- Biomolecular Engineering Department and ‡Computer Engineering Department, University of California, Santa Cruz, Santa Cruz, California 95064, United States
| | - Wai Han Mak
- Biomolecular Engineering Department and ‡Computer Engineering Department, University of California, Santa Cruz, Santa Cruz, California 95064, United States
| | - Akshar Lohith
- Biomolecular Engineering Department and ‡Computer Engineering Department, University of California, Santa Cruz, Santa Cruz, California 95064, United States
| | - Adam Seger
- Biomolecular Engineering Department and ‡Computer Engineering Department, University of California, Santa Cruz, Santa Cruz, California 95064, United States
| | - Mircea Teodorescu
- Biomolecular Engineering Department and ‡Computer Engineering Department, University of California, Santa Cruz, Santa Cruz, California 95064, United States
| | - Nader Pourmand
- Biomolecular Engineering Department and ‡Computer Engineering Department, University of California, Santa Cruz, Santa Cruz, California 95064, United States
| |
Collapse
|
41
|
Cai H, Wang Y, Yu Y, Mirkin MV, Bhakta S, Bishop GW, Joshi AA, Rusling JF. Resistive-Pulse Measurements with Nanopipettes: Detection of Vascular Endothelial Growth Factor C (VEGF-C) Using Antibody-Decorated Nanoparticles. Anal Chem 2015; 87:6403-10. [PMID: 26040997 PMCID: PMC4598329 DOI: 10.1021/acs.analchem.5b01468] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Quartz nanopipettes have recently been employed for resistive-pulse sensing of Au nanoparticles (AuNP) and nanoparticles with bound antibodies. The analytical signal in such experiments is the change in ionic current caused by the nanoparticle translocation through the pipette orifice. This paper describes resistive-pulse detection of cancer biomarker (Vascular Endothelial Growth Factor-C, VEGF-C) through the use of antibody-modified AuNPs and nanopipettes. The main challenge was to differentiate between AuNPs with attached antibodies for VEGF-C and antigen-conjugated particles. The zeta-potentials of these types of particles are not very different, and, therefore, carefully chosen pipettes with well-characterized geometry were necessary for selective detection of VEGF-C.
Collapse
Affiliation(s)
- Huijing Cai
- Department of Chemistry and Biochemistry, Queens College—CUNY, Flushing, New York 11367, United States
| | - Yixian Wang
- Department of Chemistry and Biochemistry, Queens College—CUNY, Flushing, New York 11367, United States
| | - Yun Yu
- Department of Chemistry and Biochemistry, Queens College—CUNY, Flushing, New York 11367, United States
| | - Michael V. Mirkin
- Department of Chemistry and Biochemistry, Queens College—CUNY, Flushing, New York 11367, United States
| | - Snehasis Bhakta
- Department of Chemistry, U-60, University of Connecticut, 55 N. Eagleville Rd., Storrs, Connecticut 06269-3060, United States
| | - Gregory W. Bishop
- Department of Chemistry, U-60, University of Connecticut, 55 N. Eagleville Rd., Storrs, Connecticut 06269-3060, United States
| | - Amit A. Joshi
- Department of Chemistry, U-60, University of Connecticut, 55 N. Eagleville Rd., Storrs, Connecticut 06269-3060, United States
| | - James F. Rusling
- Department of Chemistry, U-60, University of Connecticut, 55 N. Eagleville Rd., Storrs, Connecticut 06269-3060, United States
- Department of Cell Biology, University of Connecticut Health Center, Farmington, Connecticut, United States
- School of Chemistry, National University of Ireland at Galway, Galway, Ireland
| |
Collapse
|
42
|
Abstract
Within a large clonal population, such as cancerous tumor entities, cells are not identical, and the differences between intracellular pH levels of individual cells may be important indicators of heterogeneity that could be relevant in clinical practice, especially in personalized medicine. Therefore, the detection of the intracellular pH at the single-cell level is of great importance to identify and study outlier cells. However, quantitative and real-time measurements of the intracellular pH of individual cells within a cell population is challenging with existing technologies, and there is a need to engineer new methodologies. In this paper, we discuss the use of nanopipette technology to overcome the limitations of intracellular pH measurements at the single-cell level. We have developed a nano-pH probe through physisorption of chitosan onto hydroxylated quartz nanopipettes with extremely small pore sizes (~100 nm). The dynamic pH range of the nano-pH probe was from 2.6 to 10.7 with a sensitivity of 0.09 units. We have performed single-cell intracellular pH measurements using non-cancerous and cancerous cell lines, including human fibroblasts, HeLa, MDA-MB-231 and MCF-7, with the pH nanoprobe. We have further demonstrated the real-time continuous single-cell pH measurement capability of the sensor, showing the cellular pH response to pharmaceutical manipulations. These findings suggest that the chitosan-functionalized nanopore is a powerful nano-tool for pH sensing at the single-cell level with high temporal and spatial resolution.
Collapse
Affiliation(s)
- Rıfat Emrah Özel
- Biomolecular Engineering Department, University of California, Santa Cruz, Santa Cruz, CA 95064, USA
| | - Akshar Lohith
- Biomolecular Engineering Department, University of California, Santa Cruz, Santa Cruz, CA 95064, USA
| | - Wai Han Mak
- Biomolecular Engineering Department, University of California, Santa Cruz, Santa Cruz, CA 95064, USA
| | - Nader Pourmand
- Biomolecular Engineering Department, University of California, Santa Cruz, Santa Cruz, CA 95064, USA
| |
Collapse
|
43
|
Abstract
Carbon nanoelectrodes with tip diameters ranging from tens to hundreds of nanometers are fabricated by pyrolitic deposition of carbon films along the entire inner surfaces of pulled-glass pipettes. The pulled end of each glass pipette is then etched to expose a desired length (typically, a few micrometers) of carbon pipe. The carbon film provides an electrically conductive path from the nanoscopic carbon tip to the distal, macroscopic end of the pipette, bridging between the nanoscale tip and the macroscale handle, without a need for assembly. We used our nanoelectrodes to penetrate into individual cells and cell nuclei and measured the variations in the electrode impedance upon cell and nucleus penetration as well as the electrode impedance as a function of cell penetration depth. Theoretical predictions based on a simple circuit model were in good agreement with experimental data.
Collapse
Affiliation(s)
- Sean E. Anderson
- University of Pennsylvania, Department of Mechanical Engineering and Applied Mechanics, Philadelphia, PA 19104
| | - Haim H. Bau
- University of Pennsylvania, Department of Mechanical Engineering and Applied Mechanics, Philadelphia, PA 19104
| |
Collapse
|
44
|
Shen Y, Zhang Z, Fukuda T. Bending spring rate investigation of nanopipette for cell injection. NANOTECHNOLOGY 2015; 26:155702. [PMID: 25797950 DOI: 10.1088/0957-4484/26/15/155702] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Bending of nanopipette tips during cell penetration is a major cause of cell injection failure. However, the flexural rigidity of nanopipettes is little known due to their irregular structure. In this paper, we report a quantitative method to estimate the flexural rigidity of a nanopipette by investigating its bending spring rate. First nanopipettes with a tip size of 300 nm are fabricated from various glass tubes by laser pulling followed by focused ion beam (FIB) milling. Then the bending spring rate of the nanopipettes is investigated inside a scanning electron microscope (SEM). Finally, a yeast cell penetration test is performed on these nanopipettes, which have different bending spring rates. The results show that nanopipettes with a higher bending spring rate have better cell penetration capability, which confirms that the bending spring rate may well reflect the flexural rigidity of a nanopipette. This method provides a quantitative parameter for characterizing the mechanical property of a nanopipette that can be potentially taken as a standard specification in the future. This general method can also be used to estimate other one-dimensional structures for cell injection, which will greatly benefit basic cell biology research and clinical applications.
Collapse
Affiliation(s)
- Yajing Shen
- Department of Mechanical and Biomedical Engineering, City University of Hong Kong, Hong Kong, People's Republic of China
| | | | | |
Collapse
|
45
|
Sze JYY, Kumar S, Ivanov AP, Oh SH, Edel JB. Fine tuning of nanopipettes using atomic layer deposition for single molecule sensing. Analyst 2015; 140:4828-34. [DOI: 10.1039/c5an01001b] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
ALD modified pipettes provides a quick and efficient method for fine-tuning the nanopore diameter which can be used for a broad range of applications including the detection of small biomolecules at the single molecule level.
Collapse
Affiliation(s)
| | - Shailabh Kumar
- Department of Biomedical Engineering
- University of Minnesota
- Minneapolis
- USA
- Department of Electrical and Computer engineering
| | | | - Sang-Hyun Oh
- Department of Biomedical Engineering
- University of Minnesota
- Minneapolis
- USA
- Department of Electrical and Computer engineering
| | - Joshua B. Edel
- Department of Chemistry
- Imperial College London
- London SW7 2AZ
- UK
| |
Collapse
|
46
|
Sun S, Yao H, Zhang F, Zhu J. Multiplexed DNA detection based on positional encoding/decoding with self-assembled DNA nanostructures. Chem Sci 2014; 6:930-934. [PMID: 29560179 PMCID: PMC5811145 DOI: 10.1039/c4sc02696a] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2014] [Accepted: 10/15/2014] [Indexed: 01/02/2023] Open
Abstract
A multiplexed DNA detection strategy with fast hybridization kinetics based on positional encoding/decoding with self-assembled DNA nanostructures has been developed.
Current multiplexed analysis methods suffer from either slow reaction kinetics (planar arrays) or complicated encoding/decoding procedures (suspension arrays). We report herein a multiplexed DNA detection strategy that addresses these issues, based on positional encoding/decoding with self-assembled DNA nanostructures. The strategy enables the acquisition of high-resolution, consistent, and quantitative assay results in a single round of a transmission electron microscopy imaging operation. Applications in polymerase chain reaction-free settings and assays of other structurally distinct targets can be anticipated through the implementation of the strategy with miniaturized femtoliter/attoliter dispensing technology and readily accessible DNA conjugate structures.
Collapse
Affiliation(s)
- Sha Sun
- Department of Polymer Science and Engineering , School of Chemistry and Chemical Engineering , State Key Laboratory of Coordination Chemistry , Nanjing National Laboratory of Microstructures , Nanjing University , Nanjing 210093 , China .
| | - Huaxin Yao
- Department of Polymer Science and Engineering , School of Chemistry and Chemical Engineering , State Key Laboratory of Coordination Chemistry , Nanjing National Laboratory of Microstructures , Nanjing University , Nanjing 210093 , China .
| | - Feifei Zhang
- Department of Polymer Science and Engineering , School of Chemistry and Chemical Engineering , State Key Laboratory of Coordination Chemistry , Nanjing National Laboratory of Microstructures , Nanjing University , Nanjing 210093 , China .
| | - Jin Zhu
- Department of Polymer Science and Engineering , School of Chemistry and Chemical Engineering , State Key Laboratory of Coordination Chemistry , Nanjing National Laboratory of Microstructures , Nanjing University , Nanjing 210093 , China .
| |
Collapse
|
47
|
Tiwari PB, Astudillo L, Miksovska J, Wang X, Li W, Darici Y, He J. Quantitative study of protein-protein interactions by quartz nanopipettes. NANOSCALE 2014; 6:10255-10263. [PMID: 25060094 DOI: 10.1039/c4nr02964j] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
In this report, protein-modified quartz nanopipettes were used to quantitatively study protein-protein interactions in attoliter sensing volumes. As shown by numerical simulations, the ionic current through the conical-shaped nanopipette is very sensitive to the surface charge variation near the pore mouth. With the appropriate modification of negatively charged human neuroglobin (hNgb) onto the inner surface of a nanopipette, we were able to detect concentration-dependent current change when the hNgb-modified nanopipette tip was exposed to positively charged cytochrome c (Cyt c) with a series of concentrations in the bath solution. Such current change is due to the adsorption of Cyt c to the inner surface of the nanopipette through specific interactions with hNgb. In contrast, a smaller current change with weak concentration dependence was observed when Cyt c was replaced with lysozyme, which does not specifically bind to hNgb. The equilibrium dissociation constant (KD) for the Cyt c-hNgb complex formation was derived and the value matched very well with the result from surface plasmon resonance measurement. This is the first quantitative study of protein-protein interactions by a conical-shaped nanopore based on charge sensing. Our results demonstrate that nanopipettes can potentially be used as a label-free analytical tool to quantitatively characterize protein-protein interactions.
Collapse
|
48
|
Polonsky S, Balagurusamy VSK, Ott JA. Creation of a transient vapor nanogap between two fluidic reservoirs for single molecule manipulation. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2014; 85:084301. [PMID: 25173286 DOI: 10.1063/1.4890206] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
We introduce a new experimental technique for manipulating a segment of a charged macromolecule inside a transient nanogap between two fluidic reservoirs. This technique uses an FPGA-driven nanopositioner to control the coupling of a nanopipette with the liquid surface of a fluidic cell. We present results on creating a transient nanogap, triggered by a translocation of double-stranded DNA between a nanopipette and a fluidic cell, and measure the probability to find the molecule near the tip of the nanopipette after closing the gap. The developed platform will enable testing of our recent theoretical predictions for the behavior of charged macromolecule in a nanogap between two fluidic reservoirs.
Collapse
Affiliation(s)
- Stanislav Polonsky
- IBM T.J. Watson Research Center - P.O. Box 218, Yorktown Heights, New York 10598, USA
| | | | - John A Ott
- IBM T.J. Watson Research Center - P.O. Box 218, Yorktown Heights, New York 10598, USA
| |
Collapse
|
49
|
Takami T, Park BH, Kawai T. Nanopipette exploring nanoworld. NANO CONVERGENCE 2014; 1:17. [PMID: 28191397 PMCID: PMC5271136 DOI: 10.1186/s40580-014-0017-3] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/20/2014] [Accepted: 03/17/2014] [Indexed: 06/06/2023]
Abstract
Nanopipettes, with tip orifices on the order of tens to hundreds of nanometers, have been utilized in the fields of analytical chemistry and nanophysiology. Nanopipettes make nanofabrication possible at liquid/solid interfaces. Moreover, they are utilized in time-resolved measurements and for imaging biological materials, e.g., living cells, by using techniques such as scanning ion-conductance microscopy and scanning electrochemical microscopy. We have successfully fabricated ion-selective nanopipettes that can be used to identify targeted ions such as sodium and potassium in- and outside of living cells. In this review, we discuss the extent of utilization of nanopipettes in investigating the nanoworld. In addition, we discuss the potential applications of future nanopipettes.
Collapse
Affiliation(s)
- Tomohide Takami
- Division of Quantum Phases and Devices, Department of Physics, Konkuk University, Seoul, 143-701 Korea
| | - Bae Ho Park
- Division of Quantum Phases and Devices, Department of Physics, Konkuk University, Seoul, 143-701 Korea
| | - Tomoji Kawai
- Division of Quantum Phases and Devices, Department of Physics, Konkuk University, Seoul, 143-701 Korea
| |
Collapse
|
50
|
Actis P, Tokar S, Clausmeyer J, Babakinejad B, Mikhaleva S, Cornut R, Takahashi Y, López Córdoba A, Novak P, Shevchuck AI, Dougan JA, Kazarian SG, Gorelkin PV, Erofeev AS, Yaminsky IV, Unwin PR, Schuhmann W, Klenerman D, Rusakov DA, Sviderskaya EV, Korchev YE. Electrochemical nanoprobes for single-cell analysis. ACS NANO 2014; 8:875-84. [PMID: 24377306 DOI: 10.1021/nn405612q] [Citation(s) in RCA: 155] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
The measurement of key molecules in individual cells with minimal disruption to the biological milieu is the next frontier in single-cell analyses. Nanoscale devices are ideal analytical tools because of their small size and their potential for high spatial and temporal resolution recordings. Here, we report the fabrication of disk-shaped carbon nanoelectrodes whose radius can be precisely tuned within the range 5-200 nm. The functionalization of the nanoelectrode with platinum allowed the monitoring of oxygen consumption outside and inside a brain slice. Furthermore, we show that nanoelectrodes of this type can be used to impale individual cells to perform electrochemical measurements within the cell with minimal disruption to cell function. These nanoelectrodes can be fabricated combined with scanning ion conductance microscopy probes, which should allow high resolution electrochemical mapping of species on or in living cells.
Collapse
Affiliation(s)
- Paolo Actis
- Department of Medicine, Imperial College London , London W12 0NN, United Kingdom
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
Collapse
|