Controls on coarse wood decay in temperate tree species: birth of the LOGLIFE experiment

Positive feedback from woodpeckers on deadwood decomposition via invertebrates

Plant matter decomposition is a linchpin of global carbon cycling,1,2 yet the role of vertebrates remains poorly understood.3 Woodpeckers are ubiquitous vertebrate inhabitants of forests, where they hack into deadwood to forage for small animals. Our study in a temperate forest revealed not only how this behavior significantly impacts deadwood decomposition through mechanical breakdown but also how its species specificity leads to positive feedback on decomposition rates. Investigating large logs from six conifer species over 6 years in a tree cemetery, we found that woodpeckers accelerated decomposition (both mass and volume losses) selectively in softer, more decomposable deadwood like that of Norway spruce (Picea abies), which hosted abundant wood-boring beetle larvae relative to the abundances in other tree species. This selectivity triggers a positive feedback loop: bottom-up drivers (low wood density and high water-holding capacity) foster abundant invertebrate prey, promoting top-down woodpecker foraging that fragments logs and exposes inner tissues to microbial decay. Positioning woodpeckers as a potential keystone wood decay agent, our study supports the growing call for integrating vertebrate contributions into global carbon cycling models.4 As the first study to elucidate the complex interactions between deadwood traits, invertebrate populations, and woodpecker activities, we aim to galvanize further research into their often-overlooked functional role as deadwood fragmenters. The conservation implications of these findings are profound, especially in light of the historical context where vertebrates that once performed key ecological functions are now endangered or extinct due to widespread anthropogenic activities.5,6,7,8,9.

Do wood-boring beetles influence the flammability of deadwood?

Global warming increases the risk of wildfire and insect outbreaks, potentially reducing the carbon storage function of coarse woody debris (CWD). There is an increasing focus on the interactive effects of wildfire and insect infestation on forest carbon, but the impact of wood-boring beetle tunnels via their effect on the flammability of deadwood remains unexplored. We hypothesized that the presence of beetle holes, at natural densities, can affect its flammability positively through increased surface area and enhanced oxygen availability in the wood. To test this, wood-boring beetle holes were mimicked experimentally in decaying logs of two coniferous species, and flammability variables of these treated logs were compared. We found that wood-boring beetles partly increased the flammability of CWD of both species (via promoting deadwood smoldering combustion) when their holes were parallel with the airflow. Even when accounting for the influences of wood density and cracks, these radial holes continued to have a notable impact on deadwood flammability. While these holes did not make the wildfire more intense, they significantly increased carbon loss during combustion. This suggests that wood-boring beetles will enhance carbon release from deadwood into the atmosphere during wildfire.

Characterization of Culturable Mycobiome of Newly Excavated Ancient Wooden Vessels from the Archeological Site of Viminacium, Serbia

Two ancient wooden vessels, specifically a monoxyle (1st century BCE to 1st century CE) and shipwreck (15th to 17th century CE), were excavated in a well-preserved state east of the confluence of the old Mlava and the Danube rivers (Serbia). The vessels were found in the ground that used to be river sediment and were temporarily stored within the semi-underground exhibition space of Mammoth Park. As part of the pre-conservation investigations, the primary aim of the research presented was to characterize the culturable mycobiomes of two excavated wooden artifacts so that appropriate conservation procedures for alleviating post-excavation fungal infestation could be formulated. Utilizing culture-based methods, a total of 32 fungi from 15 genera were identified, mainly Ascomycota and to a lesser extent Mucoromycota sensu stricto. Soft-rot Ascomycota of genus Penicillium, followed by Aspergillus and Cephalotrichum species, were the most diverse of the isolated fungi. Out of a total of 38 isolates, screened on 7 biodegradation plate assays, 32 (84.21%) demonstrated at least one degradative property. Penicillium solitum had the highest deterioration potential, with a positive reaction in 5 separate plate assays. The obtained results further broaden the limited knowledge on the peculiarities of post-excavation soft-rot decay of archaeological wood and indicate the biochemical mechanisms at the root of post-excavation fungal deterioration.

Drought- and heat-induced mortality of conifer trees is explained by leaf and growth legacies

An increased frequency and severity of droughts and heat waves have resulted in increased tree mortality and forest dieback across the world, but underlying mechanisms are poorly understood. We used a common garden experiment with 20 conifer tree species to quantify mortality after three consecutive hot, dry summers and tested whether mortality could be explained by putative underlying mechanisms, such as stem hydraulics and legacies affected by leaf life span and stem growth responses to previous droughts. Mortality varied from 0 to 79% across species and was not affected by hydraulic traits. Mortality increased with species' leaf life span probably because leaf damage caused crown dieback and contributed to carbon depletion and bark beetle damage. Mortality also increased with lower growth resilience, which may exacerbate the contribution of carbon depletion and bark beetle sensitivity to tree mortality. Our study highlights how ecological legacies at different time scales can explain tree mortality in response to hot, dry periods and climate change.

Drought resilience of conifer species is driven by leaf lifespan but not by hydraulic traits

Increased droughts impair tree growth worldwide. This study analyzes hydraulic and carbon traits of conifer species, and how they shape species strategies in terms of their growth rate and drought resilience. We measured 43 functional stem and leaf traits for 28 conifer species growing in a 50-yr-old common garden experiment in the Netherlands. We assessed: how drought- and carbon-related traits are associated across species, how these traits affect stem growth and drought resilience, and how traits and drought resilience are related to species' climatic origin. We found two trait spectra: a hydraulics spectrum reflecting a trade-off between hydraulic and biomechanical safety vs hydraulic efficiency, and a leaf economics spectrum reflecting a trade-off between tough, long-lived tissues vs high carbon assimilation rate. Pit aperture size occupied a central position in the trait-based network analysis and also increased stem growth. Drought recovery decreased with leaf lifespan. Conifer species with long-lived leaves suffer from drought legacy effects, as drought-damaged leaves cannot easily be replaced, limiting growth recovery after drought. Leaf lifespan, rather than hydraulic traits, can explain growth responses to a drier future.

Stem traits, compartments, and tree species affect fungal communities on decaying wood

Dead wood quantity and quality is important for forest biodiversity, by determining wood‐inhabiting fungal assemblages. We therefore evaluated how fungal communities were regulated by stem traits and compartments (i.e. bark, outer‐ and inner wood) of 14 common temperate tree species. Fresh logs were incubated in a common garden experiment in a forest site in the Netherlands. After 1 and 4 years of decay, the fungal composition of different compartments was assessed using Internal Transcribed Spacer amplicon sequencing. We found that fungal alpha diversity differed significantly across tree species and stem compartments, with bark showing significantly higher fungal diversity than wood. Gymnosperms and Angiosperms hold different fungal communities, and distinct fungi were found between inner wood and other compartments. Stem traits showed significant afterlife effects on fungal communities; traits associated with accessibility (e.g. conduit diameter), stem chemistry (e.g. C, N, lignin) and physical defence (e.g. density) were important factors shaping fungal community structure in decaying stems. Overall, stem traits vary substantially across stem compartments and tree species, thus regulating fungal communities and the long‐term carbon dynamics of dead trees.

Pit and tracheid anatomy explain hydraulic safety but not hydraulic efficiency of 28 conifer species

Conifers face increased drought mortality risks because of drought-induced embolism in their vascular system. Variation in embolism resistance may result from species differences in pit structure and function, as pits control the air seeding between water-transporting conduits. This study quantifies variation in embolism resistance and hydraulic conductivity for 28 conifer species grown in a 50-year-old common garden experiment and assesses the underlying mechanisms. Conifer species with a small pit aperture, high pit aperture resistance, and large valve effect were more resistant to embolism, as they all may reduce air seeding. Surprisingly, hydraulic conductivity was only negatively correlated with tracheid cell wall thickness. Embolism resistance and its underlying pit traits related to pit size and sealing were more strongly phylogenetically controlled than hydraulic conductivity and anatomical tracheid traits. Conifers differed in hydraulic safety and hydraulic efficiency, but there was no trade-off between safety and efficiency because they are driven by different xylem anatomical traits that are under different phylogenetic control.

Stem Trait Spectra Underpin Multiple Functions of Temperate Tree Species

A central paradigm in comparative ecology is that species sort out along a slow-fast resource economy spectrum of plant strategies, but this has been rarely tested for a comprehensive set of stem traits and compartments. We tested how stem traits vary across wood and bark of temperate tree species, whether a slow-fast strategy spectrum exists, and what traits make up this plant strategy spectrum. For 14 temperate tree species, 20 anatomical, chemical, and morphological traits belonging to six key stem functions were measured for three stem compartments (inner wood, outer wood, and bark). The trait variation was explained by major taxa (38%), stem compartments (24%), and species within major taxa (19%). A continuous plant strategy gradient was found across and within taxa, running from hydraulic safe gymnosperms to conductive angiosperms. Both groups showed a second strategy gradient related to chemical defense. Gymnosperms strongly converged in their trait strategies because of their uniform tracheids. Angiosperms strongly diverged because of their different vessel arrangement and tissue types. The bark had higher concentrations of nutrients and phenolics whereas the wood had stronger physical defense. The gymnosperms have a conservative strategy associated with strong hydraulic safety and physical defense, and a narrow, specialized range of trait values, which allow them to grow well in drier and unproductive habitats. The angiosperm species show a wider trait variation in all stem compartments, which makes them successful in marginal- and in mesic, productive habitats. The associations between multiple wood and bark traits collectively define a slow-fast stem strategy spectrum as is seen also for each stem compartment.

Influence of southern pine beetle on fungal communities of wood and bark decomposition of coarse woody debris in the New Jersey pine barrens

Dead coarse woody debris (fungal food resources) on the forest floor is an ignition source for forest fires. The rate of decomposition of the debris is largely influenced by fungi, determining its residence time on the forest floor. We asked if southern pine bark beetle (Dendroctonus frontalis) attack of pitch pine (Pinus rigida) alters the decomposition and fungal community of dead woody resources. Wood and bark from beetle infested and non-beetle infested resources were decomposed in litter bags on the forest floor. Decomposition was measured as mass loss and the fungal community by next-generation (PCR and Illumina metabarcoding) sequencing. Bark decomposed slower than wood and resources colonized by beetles decomposed faster than resources with no beetles. The initial differences in fungal communities colonizing the resources continued throughout the 42 months of decomposition. Fungal diversity was higher in wood than bark in initial decay stages, but significantly lower in wood than bark at the end of the 42 month incubation. In contrast, there were no significant differences in fungal communities between beetle infested and uninfested resources. The rate of decomposition of woody resources on the forest floor has great implications for the longevity of fuel sources for forest fires, however, our results indicate that beetle attacked wood poses no greater fire risk than other dead coarse woody debris regarding the residence time.

Microbial Diversity and Ecosystem Functioning in Deadwood of Black Pine of a Temperate Forest

The present study provides a deeper insight on variations of microbial abundance and community composition concerning specific environmental parameters related to deadwood decay, focusing on a mesocosm experiment conducted with deadwood samples from black pine of different decay classes. The chemical properties and microbial communities of deadwood changed over time. The total carbon percentage remained constant in the first stage of decomposition, showing a significant increase in the last decay class. The percentage of total nitrogen and the abundances of nifH harbouring bacteria significantly increased as decomposition advanced, suggesting N wood-enrichment by microbial N immobilization and/or N2-fixation. The pH slightly decreased during decomposition and significantly correlated with fungal abundance. CO2 production was higher in the last decay class 5 and positively correlated with bacterial abundance. Production of CH4 was registered in one sample of decay class 3, which correlates with the highest abundance of methanogenic archaea that probably belonged to Methanobrevibacter genus. N2O consumption increased along decomposition progress, indicating a complete reduction of nitrate compounds to N2 via denitrification, as proved by the highest nosZ gene copy number in decay class 5. Conversely, our results highlighted a low involvement of nitrifying communities in deadwood decomposition.

Variation in Downed Deadwood Density, Biomass, and Moisture during Decomposition in a Natural Temperate Forest

Deadwood is a resource of water, nutrients, and carbon, as well as an important driving factor of spatial pedocomplexity and hillslope processes in forested landscapes. The applicability of existing relevant studies in mountain forests in Central Europe is limited by the low number of data, absence of precise dating, and short time periods studied. Here, we aimed to assess the decomposition pathway in terms of changes and variability in the physical characteristics of deadwood (wood density, biomass, and moisture) during the decomposition process, and to describe differences in decomposition rate. The research was carried out in the Žofínský Primeval Forest, one of the oldest forest reserves in Europe. Samples were taken from sapwood of downed logs of the three main tree species: Fagus sylvatica L., Abies alba Mill., and Picea abies (L.) Karst. The time since the death of each downed log was obtained using tree censuses repeated since 1975 and dendrochronology. The maximal time since the death of a log was species-specific, and ranged from 61–76 years. The rate of change (slope) of moisture content along the time since death in a linear regression model was the highest for F. sylvatica (b = 3.94) compared to A. alba (b = 2.21) and P. abies (b = 1.93). An exponential model showing the dependence of biomass loss on time since death revealed that F. sylvatica stems with a diameter of 50–90 cm had the shortest decomposition rate—51 years—followed by P. abies (71 years) and A. alba (72 years). Our findings can be used in geochemical models of element cycles in temperate old-growth forests, the prediction of deadwood dynamics and changes in related biodiversity, and in refining management recommendations.

Growth of 19 conifer species is highly sensitive to winter warming, spring frost and summer drought

BACKGROUND AND AIMS

Conifers are key components of many temperate and boreal forests and are important for forestry, but species differences in stem growth responses to climate are still poorly understood and may hinder effective management of these forests in a warmer and drier future.

METHODS

We studied 19 Northern Hemisphere conifer species planted in a 50-year-old common garden experiment in the Netherlands to (1) assess the effect of temporal dynamics in climate on stem growth, (2) test for a possible positive relationship between the growth potential and climatic growth sensitivity across species, and (3) evaluate the extent to which stem growth is controlled by phylogeny.

KEY RESULTS

Eighty-nine per cent of the species showed a significant reduction in stem growth to summer drought, 37 % responded negatively to spring frost and 32 % responded positively to higher winter temperatures. Species differed largely in their growth sensitivity to climatic variation and showed, for example, a four-fold difference in growth reduction to summer drought. Remarkably, we did not find a positive relationship between productivity and climatic sensitivity, but instead observed that some species combined a low growth sensitivity to summer drought with high growth potential. Both growth sensitivity to climate and growth potential were partly phylogenetically controlled.

CONCLUSIONS

A warmer and drier future climate is likely to reduce the productivity of most conifer species. We did not find a relationship between growth potential and growth sensitivity to climate; instead, some species combined high growth potential with low sensitivity to summer drought. This may help forest managers to select productive species that are able to cope with a warmer and drier future.

Bacteria associated with wood tissues of Esca-diseased grapevines: functional diversity and synergy with Fomitiporia mediterranea to degrade wood components

Fungi are considered to cause grapevine trunk diseases such as esca that result in wood degradation. For instance, the basidiomycete Fomitiporia mediterranea (Fmed) is overabundant in white rot, a key type of wood‐necrosis associated with esca. However, many bacteria colonize the grapevine wood too, including the white rot. In this study, we hypothesized that bacteria colonizing grapevine wood interact, possibly synergistically, with Fmed and enhance the fungal ability to degrade wood. We isolated 237 bacterial strains from esca‐affected grapevine wood. Most of them belonged to the families Xanthomonadaceae and Pseudomonadaceae. Some bacterial strains that degrade grapevine‐wood components such as cellulose and hemicellulose did not inhibit Fmed growth in vitro. We proved that the fungal ability to degrade wood can be strongly influenced by bacteria inhabiting the wood. This was shown with a cellulolytic and xylanolytic strain of the Paenibacillus genus, which displays synergistic interaction with Fmed by enhancing the degradation of wood structures. Genome analysis of this Paenibacillus strain revealed several gene clusters such as those involved in the expression of carbohydrate‐active enzymes, xylose utilization and vitamin metabolism. In addition, certain other genetic characteristics of the strain allow it to thrive as an endophyte in grapevine and influence the wood degradation by Fmed. This suggests that there might exist a synergistic interaction between the fungus Fmed and the bacterial strain mentioned above, enhancing grapevine wood degradation. Further step would be to point out its occurrence in mature grapevines to promote esca disease development.

Interspecific Variability of Water Storage Capacity and Absorbability of Deadwood

The aim of the study was to determine the water storage capacity and absorbability of deadwood of different tree species with varying degrees of decomposition. Coniferous (Silver fir—Abies alba Mill.) and deciduous (Common hornbeam—Carpinus betulus L., Common ash—Fraxinus excelsior L., Common alder—Alnus glutinosa Gaertn., and Common aspen—Populus tremula L.) species were selected for the research. The study focuses on the wood of dead trees at an advanced stage of decomposition. Deadwood samples were collected at the Czarna Rózga Nature Reserve in central Poland. Changes over time of the water absorbability and water storage capacity of deadwood were determined under laboratory conditions. The research confirmed the significance of the wood species and the degree of wood decomposition in shaping the water storage capacity and absorbability of deadwood in forest ecosystems. Fir wood was characterized by having the highest water storage capacity and water absorbability. Among deciduous species under analysis, aspen wood was characterized by having the highest water storage capacity and absorbability. Our research has confirmed that deadwood may be a significant reservoir of water in forests.

Release of coarse woody detritus-related carbon: a synthesis across forest biomes

BACKGROUND

Recent increases in forest tree mortality should increase the abundance coarse woody detritus (CWD) and ultimately lead to increased atmospheric carbon dioxide. However, the time course of carbon release from CWD is not well understood. We compiled CWD decomposition rate-constants (i.e., k) to examine how tree species, piece diameter, position (i.e., standing versus downed), canopy openness, and macroclimate influenced k. To illustrate their implications we modeled the effect of species and position on estimates of decomposition-related carbon flux. We examined a subset of currently used models to determine if their structure accounted for these factors.

RESULTS

Globally k of downed CWD varied at least 244-fold with interspecies variation at individual sites up to 76-fold. While k generally decreased with increasing piece diameter, under open canopies the opposite occurred. Standing CWD sometimes exhibited little decomposition, but sometimes had k values up to 3 times faster than downed CWD. There was a clear response of k to mean annual temperature of ≈ 2.6 times per 10 ℃; however, there was considerable variation for a given mean annual temperature related to species, diameter, and position. A key feature of carbon release from CWD after disturbance was the "evolution" of the ecosystem-level k value as positions and species mixtures of the remaining CWD changed. Variations in decomposition caused by disturbance (e.g., changes in species, positions, sizes, and microclimate) had the potential to cause net carbon fluxes to the atmosphere to be highly nonlinear. While several models currently being used for carbon accounting and assessing land-use/climate change would potentially capture some of these post disturbance changes in fluxes and carbon balances, many would not.

CONCLUSIONS

While much has been learned in the last 5 decades about CWD decomposition, to fully understand the time course of carbon release from increased mortality and other aspects of global change a new phase of global CWD research that is more systematic, experimental, and replicated needs to be initiated. If our findings are to be fully applied in modeling, an approach acknowledging how the rate of carbon release evolves over time should be implemented.

Home-Field Advantage in Wood Decomposition Is Mainly Mediated by Fungal Community Shifts at "Home" Versus "Away"

The home-field advantage (HFA) hypothesis has been used intensively to study leaf litter decomposition in various ecosystems. However, the HFA in woody substrates is still unexplored. Here, we reanalyzed and integrated existing datasets on various groups of microorganisms collected from natural deadwood of two temperate trees, Fagus sylvatica and Picea abies, from forests in which one or other of these species dominates but where both are present. Our aims were (i) to test the HFA hypothesis on wood decomposition rates of these two temperate tree species, and (ii) to investigate if HFA hypothesis can be explained by diversity and community composition of bacteria and in detail N-fixing bacteria (as determined by molecular 16S rRNA and nifH gene amplification) and fungi (as determined by molecular ITS rRNA amplification and sporocarp surveys). Our results showed that wood decomposition rates were accelerated at "home" versus "away" by 38.19% ± 20.04% (mean ± SE). We detected strong changes in fungal richness (increase 36-50%) and community composition (R_ANOSIM = 0.52-0.60, P < 0.05) according to HFA hypothesis. The changes of fungi were much stronger than for total bacteria and nitrogen fixing for both at richness and community composition levels. In conclusion, our results support the HFA hypothesis in deadwood: decomposition rate is accelerated at home due to specialization of fungal communities produced by the plant community above them. Furthermore, the higher richness of fungal sporocarps and nitrogen-fixing bacteria (nifH) may stimulate or at least stabilize wood decomposition rates at "home" versus "away."

Small Roots of Parashorea chinensis Wang Hsie Decompose Slower than Twigs

Plants produce above- and below-ground biomass. However, our understanding of both production and decomposition of below-ground biomass is poor, largely because of the difficulties of accessing roots. Below-ground organic matter decomposition studies are scant and especially rare in the tropics. In this study, we used a litter bag experiment to quantify the mass loss and nutrient dynamics of decomposing twigs and small roots from an arbuscular mycorrhizal fungal associated tree, Parashorea chinensis Wang Hsie, in a tropical rain forest in Southwest China. Overall, twig litter decomposed 1.9 times faster than small roots (decay rate (k) twig = 0.255, root = 0.134). The difference in decomposition rates can be explained by a difference in phosphorus (P) concentration, availability, and use by decomposers or carbon quality. Twigs and small roots showed an increase in nitrogen concentration, with final concentrations still higher than initial levels. This suggests nitrogen transfer from the surrounding environment into decomposing twigs and small roots. Both carbon and nitrogen dynamics were significantly predicted by mass loss and showed a negative and positive relationship, respectively. Our study results imply that small roots carbon and nitrogen increase the resident time in the soil. Therefore, a better understanding of the carbon cycle requires a better understanding of the mechanisms governing below-ground biomass decomposition.

A Wood Biology Agenda to Support Global Vegetation Modelling

Realistic forecasting of forest responses to climate change critically depends on key advancements in global vegetation modelling. Compared with traditional 'big-leaf' models that simulate forest stands, 'next-generation' vegetation models aim to track carbon-, light-, water-, and nutrient-limited growth of individual trees. Wood biology can play an important role in delivering the required knowledge at tissue-to-individual levels, at minute-to-century scales and for model parameterization and benchmarking. We propose a wood biology research agenda that contributes to filling six knowledge gaps: sink versus source limitation, drivers of intra-annual growth, drought impacts, functional wood traits, dynamic biomass allocation, and nutrient cycling. Executing this agenda will expedite model development and increase the ability of models to forecast global change impact on forest dynamics.

Bacteria inhabiting deadwood of 13 tree species are heterogeneously distributed between sapwood and heartwood

Deadwood represents an important structural component of forest ecosystems, where it provides diverse niches for saproxylic biota. Although wood-inhabiting prokaryotes are involved in its degradation, knowledge about their diversity and the drivers of community structure is scarce. To explore the effect of deadwood substrate on microbial distribution, the present study focuses on the microbial communities of deadwood logs from 13 different tree species investigated using an amplicon based deep-sequencing analysis. Sapwood and heartwood communities were analysed separately and linked to various relevant wood physico-chemical parameters. Overall, Proteobacteria, Acidobacteria and Actinobacteria represented the most dominant phyla. Microbial OTU richness and community structure differed significantly between tree species and between sapwood and heartwood. These differences were more pronounced for heartwood than for sapwood. The pH value and water content were the most important drivers in both wood compartments. Overall, investigating numerous tree species and two compartments provided a remarkably comprehensive view of microbial diversity in deadwood.

Fungal community structure of fallen pine and oak wood at different stages of decomposition in the Qinling Mountains, China

Historically, intense forest hazards have resulted in an increase in the quantity of fallen wood in the Qinling Mountains. Fallen wood has a decisive influence on the nutrient cycling, carbon budget and ecosystem biodiversity of forests, and fungi are essential for the decomposition of fallen wood. Moreover, decaying dead wood alters fungal communities. The development of high-throughput sequencing methods has facilitated the ongoing investigation of relevant molecular forest ecosystems with a focus on fungal communities. In this study, fallen wood and its associated fungal communities were compared at different stages of decomposition to evaluate relative species abundance and species diversity. The physical and chemical factors that alter fungal communities were also compared by performing correspondence analysis according to host tree species across all stages of decomposition. Tree species were the major source of differences in fungal community diversity at all decomposition stages, and fungal communities achieved the highest levels of diversity at the intermediate and late decomposition stages. Interactions between various physical and chemical factors and fungal communities shared the same regulatory mechanisms, and there was no tree species-specific influence. Improving our knowledge of wood-inhabiting fungal communities is crucial for forest ecosystem conservation.

Soil attributes and microclimate are important drivers of initial deadwood decay in sub-alpine Norway spruce forests

Deadwood is known to significantly contribute to global terrestrial carbon stocks and carbon cycling, but its decay dynamics are still not thoroughly understood. Although the chemistry of deadwood has been studied as a function of decay stage in temperate to subalpine environments, it has generally not been related to time. We therefore studied the decay (mass of deadwood, cellulose and lignin) of equal-sized blocks of Picea abies wood in soil-mesocosms over two years in the Italian Alps. The 8 sites selected were along an altitudinal sequence, reflecting different climate zones. In addition, the effect of exposure (north- and south-facing slopes) was taken into account. The decay dynamics of the mass of deadwood, cellulose and lignin were related to soil parameters (pH, soil texture, moisture, temperature) and climatic data. The decay rate constants of Picea abies deadwood were low (on average between 0.039 and 0.040y(-1)) and of lignin close to zero (or not detectable), while cellulose reacted much faster with average decay rate constants between 0.110 and 0.117y(-1). Our field experiments showed that local scale factors, such as soil parameters and topographic properties, influenced the decay process: higher soil moisture and clay content along with a lower pH seemed to accelerate wood decay. Interestingly, air temperature negatively correlated with decay rates or positively with the amount of wood components on south-facing sites. It exerted its influence rather on moisture availability, i.e. the lower the temperature the higher the moisture availability. Topographic features were also relevant with generally slower decay processes on south-facing sites than on north-facing sites owing to the drier conditions, the higher pH and the lower weathering state of the soils (less clay minerals). This study highlights the importance of a multifactorial consideration of edaphic parameters to unravel the complex dynamics of initial wood decay.

The Mass Loss and Humification of Stumps and Roots in Masson Pine Plantations Based on Log File Records

Stumps account for a large proportion of coarse woody debris in managed forests, but their decay dynamics are poorly understood. The loss of mass and the degree of humification of the above-ground woody debris, below-ground woody debris, bark and root system (R1, 10 mm ≥ diameter > 0 mm; R2, 25 mm ≥ diameter >10 mm; 100 mm ≥ R3 > 25 mm; R4 > 100 mm) of Masson pine (Pinus massoniana) stump systems were evaluated in southwestern China in a chronosequence of plantations cut 1–15 years prior to the study. The results indicated that above-ground woody debris decomposed more quickly than below-ground woody debris and bark, whereas the degree of humification followed the opposite trend. Compared with one-year stumps, the mass losses of 15-year stump systems were 60.4% for above-ground woody debris, 42.1% for below-ground woody debris, 47.3% for bark, 69.9% for R1, 47.3% for R2, 51.0% for R3, and 83.2% for R4. In contrast, below-ground woody debris showed a greater degree of humification compared with other components in the stump system. Among the root system, fine roots (R1, diameter ≤ 10 mm) had the largest k value (0.09), whereas the decay rate of coarser roots (R2, R3, R4; diameter > 10 mm) increased with increasing root diameter. However, coarse roots showed a larger degree of humification (0.2–0.6) than fine roots (0.3–0.4). These results suggest that below-ground woody debris and coarse roots may display a higher degree of humification, showing greater short-term contributions to overall humification when compared with the other components in the stump system.

Edge effects on moisture reduce wood decomposition rate in a temperate forest

Forests around the world are increasingly fragmented, and edge effects on forest microclimates have the potential to affect ecosystem functions such as carbon and nutrient cycling. Edges tend to be drier and warmer due to the effects of insolation, wind, and evapotranspiration and these gradients can penetrate hundreds of metres into the forest. Litter decomposition is a key component of the carbon cycle, which is largely controlled by saprotrophic fungi that respond to variation in temperature and moisture. However, the impact of forest fragmentation on litter decay is poorly understood. Here, we investigate edge effects on the decay of wood in a temperate forest using an experimental approach, whereby mass loss in wood blocks placed along 100 m transects from the forest edge to core was monitored over 2 years. Decomposition rate increased with distance from the edge, and was correlated with increasing humidity and moisture content of the decaying wood, such that the decay constant at 100 m was nearly twice that at the edge. Mean air temperature decreased slightly with distance from the edge. The variation in decay constant due to edge effects was larger than that expected from any reasonable estimates of climatic variation, based on a published regional model. We modelled the influence of edge effects on the decay constant at the landscape scale using functions for forest area within different distances from edge across the UK. We found that taking edge effects into account would decrease the decay rate by nearly one quarter, compared with estimates that assumed no edge effect.

Xenomic networks variability and adaptation traits in wood decaying fungi

Fungal degradation of wood is mainly restricted to basidiomycetes, these organisms having developed complex oxidative and hydrolytic enzymatic systems. Besides these systems, wood-decaying fungi possess intracellular networks allowing them to deal with the myriad of potential toxic compounds resulting at least in part from wood degradation but also more generally from recalcitrant organic matter degradation. The members of the detoxification pathways constitute the xenome. Generally, they belong to multigenic families such as the cytochrome P450 monooxygenases and the glutathione transferases. Taking advantage of the recent release of numerous genomes of basidiomycetes, we show here that these multigenic families are extended and functionally related in wood-decaying fungi. Furthermore, we postulate that these rapidly evolving multigenic families could reflect the adaptation of these fungi to the diversity of their substrate and provide keys to understand their ecology. This is of particular importance for white biotechnology, this xenome being a putative target for improving degradation properties of these fungi in biomass valorization purposes.