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Shen J, Huang T, Zhang H, Lin W. Hydrochemical and isotopic characteristics of water sources for biological activity across a massive evaporite basin on the Tibetan Plateau: Implications for aquatic environments on early Mars. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 935:173442. [PMID: 38788948 DOI: 10.1016/j.scitotenv.2024.173442] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2024] [Revised: 04/28/2024] [Accepted: 05/20/2024] [Indexed: 05/26/2024]
Abstract
Covered by vast eolian landforms, gravel deposits, and playas, the worldwide typical evaporite deposit land, Qaidam Basin, in northwestern China is analogous to early Mars when the aridification process had lasted for millions of years since the end of a wetter climate. This study aims to investigate the chemical and isotopic characteristics of waters in an evaporite-rich environment, as well as the habitable conditions therein, that have undergone a transformation similar to early Mars. In May 2023, a total of 26 water samples were collected across the representative central axis of a longitudinal aridity gradient in the Qaidam Basin, including categories of meteoric water, freshwater, standing water accumulated after precipitation, salty lacustrine water, and hypersaline brines to inspect compounds made up of carbon, nitrogen, phosphorus, sulfur, halogen, and metallic elements. As evaporation intensified, the salt types transformed from HCO3-Ca·Na to Cl·SO4-Na or ClMg. The dominance of carbonate will gradually be replaced by sulfate and chloride, leaving much more dilute and less detectable contents. The presence of trace ClO4-, ClO3-, ClO2-, and BrO3- was confirmed in a few of the sampled Qaidam waters, indicating the preservation of oxyhalides in waters within an arid region and possibly the presence of relevant microbial enzymes. The isotopes of water, carbonaceous, and nitrogenous compounds provide valuable references for either abiogenic or biogenic signatures. With undetectable amount, phosphorus was found to be the limiting nutrient in evaporative aquatic environments but not necessarily antibiosignatures. Overall, these results suggest that the paleo-lacustrine environments on Mars are more likely to preserve biosignatures if they feature the dominance of carbonate minerals, bioavailable nitrate, phosphorus, and organic carbon, the presence of thermodynamically unstable oxyhalides, and isotope ratios that point to the involvement of biological activity.
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Affiliation(s)
- Jianxun Shen
- Key Laboratory of Earth and Planetary Physics, Institute of Geology and Geophysics, Chinese Academy of Sciences, Beijing 100029, China
| | - Tianming Huang
- Key Laboratory of Shale Gas and Geoengineering, Institute of Geology and Geophysics, Chinese Academy of Sciences, Beijing 100029, China; College of Earth and Planetary Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Huiqing Zhang
- Key Laboratory of Earth and Planetary Physics, Institute of Geology and Geophysics, Chinese Academy of Sciences, Beijing 100029, China; College of Earth and Planetary Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Wei Lin
- Key Laboratory of Earth and Planetary Physics, Institute of Geology and Geophysics, Chinese Academy of Sciences, Beijing 100029, China; College of Earth and Planetary Sciences, University of Chinese Academy of Sciences, Beijing 100049, China.
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Seaton KM, Pozarycki CI, Nuñez N, Stockton AM. A Robust Capillary Electrophoresis with Laser-Induced Fluorescence Detection (CE-LIF) Method for Quantitative Compositional Analysis of Trace Amino Acids in Hypersaline Samples. ACS EARTH & SPACE CHEMISTRY 2023; 7:2214-2221. [PMID: 38026810 PMCID: PMC10658621 DOI: 10.1021/acsearthspacechem.3c00162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Revised: 09/20/2023] [Accepted: 09/28/2023] [Indexed: 12/01/2023]
Abstract
The search for life in our solar system can be enabled by the characterization of extreme environments representing conditions expected on other planets within our solar system. Molecular abundances observed in these environments help establish instrument design requirements, including limits of detection and pH/salt tolerance, and may be used for validation of proposed planetary science instrumentation. Here, we optimize capillary electrophoresis with laser-induced fluorescence detection (CE-LIF) separations for low limit of detection quantitative compositional analysis of amino acids in hypersaline samples using carboxyfluorescein succinimidyl ester (CFSE) as the amine-reactive fluorescent probe. Two methods were optimized for identification and quantification of proteinogenic amino acids, those with and those without acidic side chains, with limits of detection as low as 250 pM, improving on previous CFSE-amino acid CE-LIF methods by an order of magnitude. The resilience of the method to samples with high concentrations of Mg2+ (>4 M diluted to >0.4 M for analysis) is demonstrated on a sample collected from the salt harvesting facility South Bay Salt Works in San Diego, CA, demonstrating the highest Mg2+ tolerance for CE-LIF methods used in amino acid analyses to date. This advancement enables the rapid and robust analysis of trace amino acids and the search for biosignatures in hypersaline systems.
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Affiliation(s)
- K. Marshall Seaton
- School
of Chemistry & Biochemistry, Georgia
Institute of Technology, Atlanta, Georgia 30332, United States
| | - Chad I. Pozarycki
- School
of Chemistry & Biochemistry, Georgia
Institute of Technology, Atlanta, Georgia 30332, United States
| | - Nickie Nuñez
- School
of Chemistry & Biochemistry, Georgia
Institute of Technology, Atlanta, Georgia 30332, United States
| | - Amanda M. Stockton
- School
of Chemistry & Biochemistry, Georgia
Institute of Technology, Atlanta, Georgia 30332, United States
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Saona LA, Soria M, Villafañe PG, Lencina AI, Stepanenko T, Farías ME. Andean Microbial Ecosystems: Traces in Hypersaline Lakes About Life Origin. ACTA ACUST UNITED AC 2020. [DOI: 10.1007/978-3-030-46087-7_8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/19/2023]
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Preston LJ, Barcenilla R, Dartnell LR, Kucukkilic-Stephens E, Olsson-Francis K. Infrared Spectroscopic Detection of Biosignatures at Lake Tírez, Spain: Implications for Mars. ASTROBIOLOGY 2020; 20:15-25. [PMID: 31592682 PMCID: PMC6987737 DOI: 10.1089/ast.2019.2106] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2019] [Accepted: 08/13/2019] [Indexed: 06/10/2023]
Abstract
The detection of potential biosignatures with mineral matrices is part of a multifaceted approach in the search for life on other planetary bodies. The 2020 ExoMars Rosalind Franklin rover includes within its payload three IR spectrometers in the form of ISEM (Infrared Spectrometer for ExoMars), MicrOmega, and Ma-MISS (Mars Multispectral Imager for Subsurface Studies). The use of this technique in the detection and characterization of biosignatures is of great value. Organic materials are often co-deposited in terrestrial evaporites and as such have been proposed as relevant analogs in the search for life on Mars. This study focuses on Ca-sulfates collected from the hypersaline Tírez Lake in Spain. Mid infrared and visible near infrared analysis of soils, salt crusts, and crystals with green and red layering indicative of microbial colonization of the samples was acquired from across the lake and identified the main mineral to be gypsum with inputs of carbonate and silica. Organic functional groups that could be attributed to amides and carboxylic acids were identified as well as chlorophyll; however, due to the strong mineralogical absorptions observed, these were hard to unambiguously discern. Taxonomical assignment demonstrated that the archaeal community within the samples was dominated by the halophilic extremophile Halobacteriaceae while the bacterial community was dominated by the class Nocardiaceae. The results of this research highlight that sulfates on Mars are a mixed blessing, acting as an effective host for organic matter preservation but also a material that masks the presence of organic functional groups when analyzed with spectroscopic tools similar to those due to fly on the 2020 ExoMars rover. A suite of complementary analytical techniques therefore should be used to support the spectral identification of any candidate extraterrestrial biosignatures.
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Affiliation(s)
- Louisa J. Preston
- Department of Earth and Planetary Sciences, Birkbeck College, University of London, London, UK
| | - Rebeca Barcenilla
- Department of Earth and Planetary Sciences, Birkbeck College, University of London, London, UK
- Department of Life Sciences, University of Westminster, London, UK
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Robust Archaeal and Bacterial Communities Inhabit Shallow Subsurface Sediments of the Bonneville Salt Flats. mSphere 2019; 4:4/4/e00378-19. [PMID: 31462415 PMCID: PMC6714890 DOI: 10.1128/msphere.00378-19] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Abstract
We report the first census of natural microbial communities of the Bonneville Salt Flats (BSF), a perennial salt pan at the Utah-Nevada border. Environmental DNA sequencing of archaeal and bacterial 16S rRNA genes was conducted on samples from multiple evaporite sediment layers collected from the upper 30 cm of the surface salt crust. Our results show that at the time of sampling (September 2016), BSF hosted a robust microbial community dominated by diverse halobacteria and Salinibacter species. Sequences identical to Geitlerinema sp. strain PCC 9228, an anoxygenic cyanobacterium that uses sulfide as the electron donor for photosynthesis, are also abundant in many samples. We identified taxonomic groups enriched in each layer of the salt crust sediment and revealed that the upper gypsum sediment layer found immediately under the uppermost surface halite contains a robust microbial community. In these sediments, we found an increased presence of Thermoplasmatales, Hadesarchaeota, Nanoarchaeaeota, Acetothermia, Desulfovermiculus, Halanaerobiales, Bacteroidetes, and Rhodovibrio This study provides insight into the diversity, spatial heterogeneity, and geologic context of a surprisingly complex microbial ecosystem within this macroscopically sterile landscape.IMPORTANCE Pleistocene Lake Bonneville, which covered a third of Utah, desiccated approximately 13,000 years ago, leaving behind the Bonneville Salt Flats (BSF) in the Utah West Desert. The potash salts that saturate BSF basin are extracted and sold as an additive for agricultural fertilizers. The salt crust is a well-known recreational and economic commodity, but the biological interactions with the salt crust have not been studied. This study is the first geospatial analysis of microbially diverse populations at this site using cultivation-independent environmental DNA sequencing methods. Identification of the microbes present within this unique, dynamic, and valued sedimentary evaporite environment is an important step toward understanding the potential consequences of perturbations to the microbial ecology on the surrounding landscape and ecosystem.
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Gómez F, Cavalazzi B, Rodríguez N, Amils R, Ori GG, Olsson-Francis K, Escudero C, Martínez JM, Miruts H. Ultra-small microorganisms in the polyextreme conditions of the Dallol volcano, Northern Afar, Ethiopia. Sci Rep 2019; 9:7907. [PMID: 31133675 PMCID: PMC6536532 DOI: 10.1038/s41598-019-44440-8] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2018] [Accepted: 05/15/2019] [Indexed: 11/09/2022] Open
Abstract
The Dallol geothermal area in the northern part of the Danakil Depression (up to 124-155 meter below sea level) is deemed one of the most extreme environments on Earth. The area is notable for being part of the Afar Depression, an incipient seafloor-spreading center located at the triple junction, between Nubian, Somali and Arabian plates, and for hosting environments at the very edge of natural physical-chemical extremities. The northern part of the Danakil Depression is dominated by the Assale salt plain (an accumulation of marine evaporite deposits) and hosts the Dallol volcano. Here, the interaction between the evaporitic deposit and the volcanisms have created the unique Dallol hot springs, which are highly acidic (pH ~ 0) and saline (saturation) with maximum temperatures ranging between 90 and 109 °C. Here we report for the first time evidence of life existing with these hot springs using a combination of morphological and molecular analyses. Ultra-small structures are shown to be entombed within mineral deposits, which are identified as members of the Order Nanohaloarchaea. The results from this study suggest the microorganisms can survive, and potential live, within this extreme environment, which has implications for understanding the limits of habitability on Earth and on (early) Mars.
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Affiliation(s)
- Felipe Gómez
- Centro de Astrobiología (INTA-CSIC) Crtera. Ajalvir km 4 Torrejón de Ardoz, Madrid, 28850, Spain.
| | - Barbara Cavalazzi
- Dipartimento di Scienze Biologiche, Geologiche e Ambientali (BiGeA), Università di Bologna, Bologna, Italy.,Department of Geology, University of Johannesburg, Johannesburg, South Africa
| | - Nuria Rodríguez
- Centro de Astrobiología (INTA-CSIC) Crtera. Ajalvir km 4 Torrejón de Ardoz, Madrid, 28850, Spain
| | - Ricardo Amils
- Centro de Astrobiología (INTA-CSIC) Crtera. Ajalvir km 4 Torrejón de Ardoz, Madrid, 28850, Spain.,Centro de Biología Molecular "Severo Ochoa" Cantoblanco, Madrid, Spain
| | - Gian Gabriele Ori
- IRSPS, Universitá d'Annunzio, Pescara, Italy.,Ibn Battuta Centre, Université Cadi Ayyad, Marrakech, Morocco
| | - Karen Olsson-Francis
- School of Environment, Earth and Ecosystems Sciences, The Open University, Milton Keynes, UK
| | - Cristina Escudero
- Centro de Biología Molecular "Severo Ochoa" Cantoblanco, Madrid, Spain
| | - Jose M Martínez
- Centro de Biología Molecular "Severo Ochoa" Cantoblanco, Madrid, Spain
| | - Hagos Miruts
- Department of Earth Sciences, Mekelle University, Mekelle, Tigre, Ethiopia
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Chan MA, Bowen BB, Corsetti FA, Farrand WH, Law ES, Newsom HE, Perl SM, Spear JR, Thompson DR. Exploring, Mapping, and Data Management Integration of Habitable Environments in Astrobiology. Front Microbiol 2019; 10:147. [PMID: 30891006 PMCID: PMC6412026 DOI: 10.3389/fmicb.2019.00147] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2018] [Accepted: 01/21/2019] [Indexed: 11/17/2022] Open
Abstract
New approaches to blending geoscience, planetary science, microbiology-geobiology/ecology, geoinformatics and cyberinfrastructure technology disciplines in a holistic effort can be transformative to astrobiology explorations. Over the last two decades, overwhelming orbital evidence has confirmed the abundance of authigenic (in situ, formed in place) minerals on Mars. On Earth, environments where authigenic minerals form provide a substrate for the preservation of microbial life. Similarly, extraterrestrial life is likely to be preserved where crustal minerals can record and preserve the biochemical mechanisms (i.e., biosignatures). The search for astrobiological evidence on Mars has focused on identifying past or present habitable environments - places that could support some semblance of life. Thus, authigenic minerals represent a promising habitable environment where extraterrestrial life could be recorded and potentially preserved over geologic time scales. Astrobiology research necessarily takes place over vastly different scales; from molecules to viruses and microbes to those of satellites and solar system exploration, but the differing scales of analyses are rarely connected quantitatively. The mismatch between the scales of these observations- from the macro- satellite mineralogical observations to the micro- microbial observations- limits the applicability of our astrobiological understanding as we search for records of life beyond Earth. Each-scale observation requires knowledge of the geologic context and the environmental parameters important for assessing habitability. Exploration efforts to search for extraterrestrial life should attempt to quantify both the geospatial context and the temporal/spatial relationships between microbial abundance and diversity within authigenic minerals at multiple scales, while assimilating resolutions from satellite observations to field measurements to microscopic analyses. Statistical measures, computer vision, and the geospatial synergy of Geographic Information Systems (GIS), can allow analyses of objective data-driven methods to locate, map, and predict where the "sweet spots" of habitable environments occur at multiple scales. This approach of science information architecture or an "Astrobiology Information System" can provide the necessary maps to guide researchers to discoveries via testing, visualizing, documenting, and collaborating on significant data relationships that will advance explorations for evidence of life in our solar system and beyond.
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Affiliation(s)
- Marjorie A. Chan
- Department of Geology and Geophysics, The University of Utah, Salt Lake City, UT, United States
| | - Brenda B. Bowen
- Department of Geology and Geophysics, The University of Utah, Salt Lake City, UT, United States
| | - Frank A. Corsetti
- Department of Earth Sciences, University of Southern California, Los Angeles, CA, United States
| | | | - Emily S. Law
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, United States
| | - Horton E. Newsom
- Department Earth and Planetary Sciences, University of New Mexico, Albuquerque, NM, United States
| | - Scott M. Perl
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, United States
| | - John R. Spear
- Department of Civil and Environmental Engineering, Colorado School of Mines, Golden, CO, United States
| | - David R. Thompson
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, United States
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Kereszturi A, Kapui Z, Ori GG, Taj-Eddine K, Ujvari G. Mars-Relevant Field Experiences in Morocco: The Importance of Spatial Scales and Subsurface Exploration. ASTROBIOLOGY 2018; 18:1329-1350. [PMID: 30251874 DOI: 10.1089/ast.2017.1676] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
During field work at the Ibn Battuta Mars analogue sites, two research questions were analyzed: (1) How do we identify sampling sites using remote and local imaging and (2) what kind of information can be gained from shallow subsurface exploration? While remote images help in targeting field activities in general, the connection between observations at different spatial scales for different rocky desert terrain types is not well established; in this, focused comparison of remote in situ images of well-selected analogues would help a great deal. Dried up lake beds as discerned in remotely acquired data may not show signatures of past water activity, while shallow subsurface exploration could reveal the lacustrine period. Acquisition of several satellite images of the same terrain under different geometries would help to support the planning of such in situ work. The selection of appropriate sampling sites in fluvial settings could be improved by analyzing long, meter-high, open-air outcrops that formed during most recent fluvial episodes. Such settings are abundant on Earth and could be present on Mars but may be just below the resolution of available data. By using 20-30-cm-deep excavations, shallow subsurface exploration could reveal the last period of geological history that would have been unattainable by surface observation alone. Aggregates embedded in the original strata or from heavily pulverized samples could not be identified; only weakly fragmented samples viewed right after acquisition showed aggregates, and thus, the Close-Up Imager (CLUPI) on the ExoMover might provide information on cementation-related aggregation on the observing plate before crushing. The mechanical separation of different size grains (mainly clays and attached minerals) would also support the identification of individual components. To maximize context information during subsurface exploration, rover imaging should be accomplished before crushing; however, currently planned imaging may not be ideal for this.
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Affiliation(s)
- Akos Kereszturi
- 1 Konkoly Thege Miklos Astronomical Institute , Research Centre for Astronomy and Earth Sciences, Budapest, Hungary
| | - Zsuzsanna Kapui
- 2 Institute for Geological and Geochemical Research , Research Centre for Astronomy and Earth Sciences, Budapest, Hungary
| | - Gian Gabrielle Ori
- 3 Ibn Battuta Centre, Cadi Ayyad University , Marrakech, Morocco
- 4 International Research School on Planetary Sciences , Pescara, Italy
| | - Kamal Taj-Eddine
- 3 Ibn Battuta Centre, Cadi Ayyad University , Marrakech, Morocco
| | - Gabor Ujvari
- 2 Institute for Geological and Geochemical Research , Research Centre for Astronomy and Earth Sciences, Budapest, Hungary
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Huang T, Wang R, Xiao L, Wang H, Martínez JM, Escudero C, Amils R, Cheng Z, Xu Y. Dalangtan Playa (Qaidam Basin, NW China): Its microbial life and physicochemical characteristics and their astrobiological implications. PLoS One 2018; 13:e0200949. [PMID: 30067805 PMCID: PMC6070256 DOI: 10.1371/journal.pone.0200949] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2018] [Accepted: 07/04/2018] [Indexed: 01/29/2023] Open
Abstract
Dalangtan Playa is the second largest salt playa in the Qaidam Basin, north-western China. The hyper saline deposition, extremely arid climate and high UV radiation make Dalangtan a Mars analogue both for geomorphology and life preservation. To better understand microbial life at Dalangtan, both culture-dependent and culture-independent methods were examined and simultaneously, environment conditions and the evaporitic mineral assemblages were investigated. Ten and thirteen subsurface samples were collected along a 595-cm deep profile (P1) and a 685-cm deep profile (P2) respectively, and seven samples were gathered from surface sediments. These samples are composed of salt minerals, minor silicate mineral fragments and clays. The total bacterial cell numbers are (1.54±0.49) ×10(5) g-1 for P1 and (3.22±0.95) ×10(5) g-1 for P2 as indicated by the CAtalyzed Reporter Deposition- Fluorescent in situ Hybridization (CARD-FISH). 76.6% and 75.7% of the bacteria belong to Firmicutes phylum respectively from P1 and P2. In total, 47 bacteria and 6 fungi were isolated from 22 subsurface samples. In contrast, only 3 bacteria and 1 fungus were isolated from 3 surface samples. The isolated bacteria show high homology (≥97%) with members of the Firmicutes phylum (47 strains, 8 genera) and the Actinobacteria phylum (3 strains, 2 genera), which agrees with the result of CARD-FISH. Isolated fungi showed ≥98% ITS1 homology with members of the phylum Ascomycota. Moisture content and TOC values may control the sediments colonization. Given the deliquescence of salts, evaporites may provide refuge for microbial life, which merits further investigation. Halotolerant and spore-forming microorganisms are the dominant microbial groups capable of surviving under extreme conditions. Our results offer brand-new information on microbial biomass in Dalangtan Playa and shed light on understanding the potential microbial life in the dried playa or paleo-lakes on Mars.
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Affiliation(s)
- Ting Huang
- State Key Laboratory of Geological Process and Mineral Resources, Planetary Science Institute, China University of Geosciences, Wuhan, Hubei, China
| | - Ruicheng Wang
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan, Hubei, China
| | - Long Xiao
- State Key Laboratory of Geological Process and Mineral Resources, Planetary Science Institute, China University of Geosciences, Wuhan, Hubei, China
- Space Science Institute, Macau University of Science and Technology, Macau, China
- * E-mail: (LX); (HW)
| | - Hongmei Wang
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan, Hubei, China
- * E-mail: (LX); (HW)
| | - José M. Martínez
- Centro de Biología Molecular “Severo Ochoa” (UAM-CSIC), Madrid, Spain
| | - Cristina Escudero
- Centro de Biología Molecular “Severo Ochoa” (UAM-CSIC), Madrid, Spain
| | - Ricardo Amils
- Centro de Biología Molecular “Severo Ochoa” (UAM-CSIC), Madrid, Spain
- Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Madrid, Spain
| | - Ziye Cheng
- State Key Laboratory of Geological Process and Mineral Resources, Planetary Science Institute, China University of Geosciences, Wuhan, Hubei, China
| | - Yi Xu
- Space Science Institute, Macau University of Science and Technology, Macau, China
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Huang 黄俊 J, Salvatore MR, Edwards CS, Harris RL, Christensen PR. A Complex Fluviolacustrine Environment on Early Mars and Its Astrobiological Potentials. ASTROBIOLOGY 2018; 18:1081-1091. [PMID: 30074400 DOI: 10.1089/ast.2017.1757] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Chloride-bearing deposits and phyllosilicates-bearing units are widely distributed in the southern highlands of Mars, but these phases are rarely found together in fluviolacustrine environments. The study of the coexistence of these minerals can provide important insights into geochemistry, water activity, and ultimately the climate and habitability of early Mars. Here we use high-resolution compositional and morphological orbiter data to identify and characterize the context of diverse minerals in a Noachian fluviolacustrine environment west of Knobel crater (6.7°S, 226.8°W). The chlorides in this region are likely formed through the evaporation of brines in a closed topographic basin. The formation age of chlorides is older than 3.7 Ga, based on stratigraphic relationships identified and previously obtained crater retention ages. The timing of the alteration of basaltic materials to iron-magnesium smectites in relation to the chloride formation in this location is enigmatic and is unable to be resolved with currently available remote sensing data. Importantly, we find that this close relationship between these key minerals revealed by the currently available data details a complex and intimate history of aqueous activity in the region. Of critical importance are the evaporitic deposits as analogous terrestrial deposits have been shown to preserve ancient biosignatures and possibly even sustain microbial communities for hundreds of millions of years. These salts could have protected organic matter from ultraviolet radiation, or even allow modern habitable microenvironments in the shallow subsurface through periodic deliquescence. The high astrobiology potential of this site makes it a good candidate for future landed and sample return missions (e.g., the Chinese 2020 Mars mission).
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Affiliation(s)
- Jun Huang 黄俊
- 1 Planetary Science Institute, State Key Laboratory of Geological Processes and Mineral Resources, School of Earth Sciences, China University of Geosciences , Wuhan, China
- 2 Lunar and Planetary Science Laboratory, Macau University of Science and Technology-Partner Laboratory of Key Laboratory of Lunar and Deep Space Exploration , Chinese Academy of Sciences, Macau, China
- 5 School of Earth and Space Exploration, Arizona State University , Tempe, Arizona
| | - Mark R Salvatore
- 3 Department of Physics and Astronomy, Northern Arizona University , Flagstaff, Arizona
| | - Christopher S Edwards
- 3 Department of Physics and Astronomy, Northern Arizona University , Flagstaff, Arizona
| | - Rachel L Harris
- 4 Department of Geosciences, Princeton University , Princeton, New Jersey
| | - Philip R Christensen
- 5 School of Earth and Space Exploration, Arizona State University , Tempe, Arizona
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Effect of UVC Radiation on Hydrated and Desiccated Cultures of Slightly Halophilic and Non-Halophilic Methanogenic Archaea: Implications for Life on Mars. Microorganisms 2018; 6:microorganisms6020043. [PMID: 29757234 PMCID: PMC6027381 DOI: 10.3390/microorganisms6020043] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2018] [Revised: 04/30/2018] [Accepted: 05/10/2018] [Indexed: 11/20/2022] Open
Abstract
Methanogens have been considered models for life on Mars for many years. In order to survive any exposure at the surface of Mars, methanogens would have to endure Martian UVC radiation. In this research, we irradiated hydrated and desiccated cultures of slightly halophilic Methanococcus maripaludis and non-halophilic Methanobacterium formicicum for various time intervals with UVC (254 nm) radiation. The survivability of the methanogens was determined by measuring methane concentrations in the headspace gas samples of culture tubes after re-inoculation of the methanogens into their growth-supporting media following exposure to UVC radiation. Hydrated M. maripaludis survived 24 h of UVC exposure, while in a desiccated condition they endured for 16 h. M. formicicum also survived UVC radiation for 24 h in a liquid state; however, in a desiccated condition, the survivability of M. formicicum was only 12 h. Some of the components of the growth media could have served as shielding agents that protected cells from damage caused by exposure to ultraviolet radiation. Overall, these results suggest that limited exposure (12–24 h) to UVC radiation on the surface of Mars would not necessarily be a limiting factor for the survivability of M. maripaludis and M. formicicum.
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McMahon S, Bosak T, Grotzinger JP, Milliken RE, Summons RE, Daye M, Newman SA, Fraeman A, Williford KH, Briggs DEG. A Field Guide to Finding Fossils on Mars. JOURNAL OF GEOPHYSICAL RESEARCH. PLANETS 2018; 123:1012-1040. [PMID: 30034979 PMCID: PMC6049883 DOI: 10.1029/2017je005478] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2017] [Revised: 03/28/2018] [Accepted: 04/23/2018] [Indexed: 05/05/2023]
Abstract
The Martian surface is cold, dry, exposed to biologically harmful radiation and apparently barren today. Nevertheless, there is clear geological evidence for warmer, wetter intervals in the past that could have supported life at or near the surface. This evidence has motivated National Aeronautics and Space Administration and European Space Agency to prioritize the search for any remains or traces of organisms from early Mars in forthcoming missions. Informed by (1) stratigraphic, mineralogical and geochemical data collected by previous and current missions, (2) Earth's fossil record, and (3) experimental studies of organic decay and preservation, we here consider whether, how, and where fossils and isotopic biosignatures could have been preserved in the depositional environments and mineralizing media thought to have been present in habitable settings on early Mars. We conclude that Noachian-Hesperian Fe-bearing clay-rich fluvio-lacustrine siliciclastic deposits, especially where enriched in silica, currently represent the most promising and best understood astropaleontological targets. Siliceous sinters would also be an excellent target, but their presence on Mars awaits confirmation. More work is needed to improve our understanding of fossil preservation in the context of other environments specific to Mars, particularly within evaporative salts and pore/fracture-filling subsurface minerals.
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Affiliation(s)
- S. McMahon
- Department of Geology and GeophysicsYale UniversityNew HavenCTUSA
- UK Centre for Astrobiology, School of Physics and AstronomyUniversity of EdinburghEdinburghUK
| | - T. Bosak
- Department of Earth, Atmospheric and Planetary SciencesMassachusetts Institute of TechnologyCambridgeMAUSA
| | - J. P. Grotzinger
- Division of Geological and Planetary SciencesCalifornia Institute of TechnologyPasadenaCAUSA
| | - R. E. Milliken
- Department of Earth, Environmental and Planetary SciencesBrown UniversityProvidenceRIUSA
| | - R. E. Summons
- Department of Earth, Atmospheric and Planetary SciencesMassachusetts Institute of TechnologyCambridgeMAUSA
| | - M. Daye
- Department of Earth, Atmospheric and Planetary SciencesMassachusetts Institute of TechnologyCambridgeMAUSA
| | - S. A. Newman
- Department of Earth, Atmospheric and Planetary SciencesMassachusetts Institute of TechnologyCambridgeMAUSA
| | - A. Fraeman
- Jet Propulsion LaboratoryCalifornia Institute of TechnologyPasadenaCAUSA
| | - K. H. Williford
- Jet Propulsion LaboratoryCalifornia Institute of TechnologyPasadenaCAUSA
| | - D. E. G. Briggs
- Department of Geology and GeophysicsYale UniversityNew HavenCTUSA
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Jones DL, Baxter BK. DNA Repair and Photoprotection: Mechanisms of Overcoming Environmental Ultraviolet Radiation Exposure in Halophilic Archaea. Front Microbiol 2017; 8:1882. [PMID: 29033920 PMCID: PMC5626843 DOI: 10.3389/fmicb.2017.01882] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2017] [Accepted: 09/14/2017] [Indexed: 12/31/2022] Open
Abstract
Halophilic archaea push the limits of life at several extremes. In particular, they are noted for their biochemical strategies in dealing with osmotic stress, low water activity and cycles of desiccation in their hypersaline environments. Another feature common to their habitats is intense ultraviolet (UV) radiation, which is a challenge that microorganisms must overcome. The consequences of high UV exposure include DNA lesions arising directly from bond rearrangement of adjacent bipyrimidines, or indirectly from oxidative damage, which may ultimately result in mutation and cell death. As such, these microorganisms have evolved a number of strategies to navigate the threat of DNA damage, which we differentiate into two categories: DNA repair and photoprotection. Photoprotection encompasses damage avoidance strategies that serve as a "first line of defense," and in halophilic archaea include pigmentation by carotenoids, mechanisms of oxidative damage avoidance, polyploidy, and genomic signatures that make DNA less susceptible to photodamage. Photolesions that do arise are addressed by a number of DNA repair mechanisms that halophilic archaea efficiently utilize, which include photoreactivation, nucleotide excision repair, base excision repair, and homologous recombination. This review seeks to place DNA damage, repair, and photoprotection in the context of halophilic archaea and the solar radiation of their hypersaline environments. We also provide new insight into the breadth of strategies and how they may work together to produce remarkable UV-resistance for these microorganisms.
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Affiliation(s)
| | - Bonnie K. Baxter
- Department of Biology, Great Salt Lake Institute, Westminster College, Salt Lake City, UT, United States
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14
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Mota JF, Garrido-Becerra JA, Merlo ME, Medina-Cazorla JM, Sánchez-Gómez P. The Edaphism: Gypsum, Dolomite and Serpentine Flora and Vegetation. THE VEGETATION OF THE IBERIAN PENINSULA 2017. [DOI: 10.1007/978-3-319-54867-8_6] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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15
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16
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McKay CP, Rask JC, Detweiler AM, Bebout BM, Everroad RC, Lee JZ, Chanton JP, Mayer MH, Caraballo AAL, Kapili B, Al-Awar M, Al-Farraj A. An Unusual Inverted Saline Microbial Mat Community in an Interdune Sabkha in the Rub' al Khali (the Empty Quarter), United Arab Emirates. PLoS One 2016; 11:e0150342. [PMID: 26982497 PMCID: PMC4794207 DOI: 10.1371/journal.pone.0150342] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2015] [Accepted: 02/14/2016] [Indexed: 11/23/2022] Open
Abstract
Salt flats (sabkha) are a recognized habitat for microbial life in desert environments and as analogs of habitats for possible life on Mars. Here we report on the physical setting and microbiology of interdune sabkhas among the large dunes in the Rub' al Khali (the Empty Quarter) in Liwa Oasis, United Arab Emirates. The salt flats, composed of gypsum and halite, are moistened by relatively fresh ground water. The result is a salinity gradient that is inverted compared to most salt flat communities with the hypersaline layer at the top and freshwater layers below. We describe and characterize a rich photosynthetically-based microbial ecosystem that is protected from the arid outside environment by a translucent salt crust. Gases collected from sediments under shallow ponds in the sabkha contain methane in concentrations as high as 3400 ppm. The salt crust could preserve biomarkers and other evidence for life in the salt after it dries out. Chloride-filled depressions have been identified on Mars and although surface flow of water is unlikely on Mars today, ground water is possible. Such a near surface system with modern groundwater flowing under ancient salt deposits could be present on Mars and could be accessed by surface rovers.
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Affiliation(s)
- Christopher P. McKay
- NASA Ames Research Center, Moffett Field, California, United States of America
- * E-mail:
| | - Jon C. Rask
- NASA Ames Research Center, Moffett Field, California, United States of America
| | - Angela M. Detweiler
- NASA Ames Research Center, Moffett Field, California, United States of America
- Bay Area Environmental Research Institute, Petaluma, California, United States of America
| | - Brad M. Bebout
- NASA Ames Research Center, Moffett Field, California, United States of America
| | - R. Craig Everroad
- NASA Ames Research Center, Moffett Field, California, United States of America
- Bay Area Environmental Research Institute, Petaluma, California, United States of America
| | - Jackson Z. Lee
- NASA Ames Research Center, Moffett Field, California, United States of America
- Bay Area Environmental Research Institute, Petaluma, California, United States of America
| | - Jeffrey P. Chanton
- Department of Earth, Ocean and Atmospheric Science, Florida State University, Tallahassee, Florida, United States of America
| | - Marisa H. Mayer
- NASA Ames Research Center, Moffett Field, California, United States of America
| | | | - Bennett Kapili
- NASA Ames Research Center, Moffett Field, California, United States of America
| | - Meshgan Al-Awar
- Research and Studies Center, Dubai Police Academy, Dubai, United Arab Emirates
| | - Asma Al-Farraj
- Geography Department, United Arab Emirates University, Al Ain, United Arab Emirates
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17
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Verseux CN, Paulino-Lima IG, Baqué M, Billi D, Rothschild LJ. Synthetic Biology for Space Exploration: Promises and Societal Implications. ETHICS OF SCIENCE AND TECHNOLOGY ASSESSMENT 2016. [DOI: 10.1007/978-3-319-21088-9_4] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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Albarracín VH, Gärtner W, Farias ME. Forged Under the Sun: Life and Art of Extremophiles from Andean Lakes. Photochem Photobiol 2015; 92:14-28. [PMID: 26647770 DOI: 10.1111/php.12555] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2015] [Revised: 10/09/2015] [Accepted: 11/05/2015] [Indexed: 12/25/2022]
Abstract
High-altitude Andean lakes (HAAL) are a treasure chest for microbiological research in South America. Their indigenous microbial communities are exposed to extremely high UV irradiation and to multiple chemical extremes (Arsenic, high salt content, alkalinity). Microbes are found both, free-living or associated into microbial mats with different degrees of mineralization and lithification, including unique modern stromatolites located at 3570 m above sea level. Characterization of these polyextremophilic microbes began only recently, employing morphological and phylogenetic methods as well as high-throughput sequencing and proteomics approach. Aside from providing a general overview on microbial communities, special attention is given to various survival strategies; HAAL's microbes present a complex system of shared genetic and physiological mechanisms (UV-resistome) based on UV photoreceptors and stress sensors with their corresponding response regulators, UV avoidance and protection strategies, damage tolerance and UV damage repair. Molecular information will be provided for what is, so far the most studied HAAL molecule, a CPD-Class I photolyase from Acinetobacter Ver3 (Laguna Verde, 4400 m). This work further proposes some strategies that make an appeal for the preservation of HAAL, a highly fragile environment that offers promising and ample research possibilities.
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Affiliation(s)
- Virginia Helena Albarracín
- Planta Piloto de Procesos Industriales y Microbiológicos (PROIMI), CCT, CONICET, Tucumán, Argentina.,Facultad de Ciencias Naturales e Instituto Miguel Lillo, Universidad Nacional de Tucumán, Tucumán, Argentina
| | - Wolfgang Gärtner
- Max-Planck-Institute for Chemical Energy Conversion, Mülheim, Germany
| | - María Eugenia Farias
- Planta Piloto de Procesos Industriales y Microbiológicos (PROIMI), CCT, CONICET, Tucumán, Argentina
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Taher AG. Microbially induced sedimentary structures in evaporite-siliciclastic sediments of Ras Gemsa sabkha, Red Sea Coast, Egypt. J Adv Res 2015; 5:577-86. [PMID: 25685526 PMCID: PMC4294312 DOI: 10.1016/j.jare.2013.07.009] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2013] [Revised: 07/27/2013] [Accepted: 07/28/2013] [Indexed: 11/30/2022] Open
Abstract
The coastal sabkha in Ras Gemsa, Red Sea coast with its colonizing microbial mats and biofilms was investigated. The sabkha sediments consist mainly of terrigenous siliciclastic material accompanied by the development of evaporites. Halite serves as a good conduit for light and reduces the effect of intensive harmful solar radiation, which allows microbial mats to survive and flourish. The microbial mats in the evaporite–siliciclastic environments of such sabkha display distinctive sedimentary structures (microbially induced sedimentary structures), including frozen multidirected ripple marks, salt-encrusted crinkle mats, jelly roll structure, and petee structures. Scanning electron microscopy of the sediment surface colonized by cyanobacteria revealed that sand grains of the studied samples are incorporated into the biofilm by trapping and binding processes. Filamentous cyanobacteria and their EPS found in the voids in and between the particles construct a network that effectively interweaves and stabilizes the surface sediments. In advanced stages, the whole surface is covered by a spider web-like structure of biofilm, leading to a planar surface morphology. Sabkha with its chemical precipitates is a good model for potential preservation of life signatures. It is worthy to note that the available, published works on the subject of the present work are not numerous.
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Affiliation(s)
- Amany G Taher
- Department of Geology, Faculty of Sciences, Cairo University, Giza, Egypt
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20
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Oren A. Halophilic archaea on Earth and in space: growth and survival under extreme conditions. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2014; 372:rsta.2014.0194. [PMID: 25368347 DOI: 10.1098/rsta.2014.0194] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Salts are abundant on Mars, and any liquid water that is present or may have been present on the planet is expected to be hypersaline. Halophilic archaea (family Halobacteriaceae) are the microorganisms best adapted to life at extremes of salinity on Earth. This paper reviews the properties of the Halobacteriaceae that may make the group good candidates for life also on Mars. Many species resist high UV and gamma radiation levels; one species has survived exposure to vacuum and radiation during a space flight; and there is at least one psychrotolerant species. Halophilic archaea may survive for millions of years within brine inclusions in salt crystals. Many species have different modes of anaerobic metabolism, and some can use light as an energy source using the light-driven proton pump bacteriorhodopsin. They are also highly tolerant to perchlorate, recently shown to be present in Martian soils, and some species can even use perchlorate as an electron acceptor to support anaerobic growth. The presence of characteristic carotenoid pigments (α-bacterioruberin and derivatives) makes the Halobacteriaceae easy to identify by Raman spectroscopy. Thus, if present on Mars, such organisms may be detected by Raman instrumentation planned to explore Mars during the upcoming ExoMars mission.
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Affiliation(s)
- Aharon Oren
- Department of Plant and Environmental Sciences, The Alexander Silverman Institute of Life Sciences, The Edmond J. Safra Campus, Givat Ram, Jerusalem 91904, Israel
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21
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Vítek P, Jehlička J, Edwards HGM, Hutchinson I, Ascaso C, Wierzchos J. Miniaturized Raman instrumentation detects carotenoids in Mars-analogue rocks from the Mojave and Atacama deserts. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2014; 372:rsta.2014.0196. [PMID: 25368344 DOI: 10.1098/rsta.2014.0196] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
This study is primarily focused on proving the potential of miniaturized Raman systems to detect any biomolecular and mineral signal in natural geobiological samples that are relevant for future application of the technique within astrobiologically aimed missions on Mars. A series of evaporites of varying composition and origin from two extremely dry deserts were studied, namely Atacama and Mojave. The samples represent both dry evaporitic deposits and recent evaporitic efflorescences from hypersaline brines. The samples comprise halite and different types of sulfates and carbonates. The samples were analysed in two different ways: (i) directly as untreated rocks and (ii) as homogenized powders. Two excitation wavelengths of miniaturized Raman spectrometers were compared: 532 and 785 nm. The potential to detect carotenoids as biomarkers on Mars compared with the potential detection of carbonaceous matter using miniaturized instrumentation is discussed.
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Affiliation(s)
- P Vítek
- Institute of Geochemistry, Mineralogy and Mineral Resources, Charles University in Prague, Albertov 6, 128 43 Prague 2, Czech Republic
| | - J Jehlička
- Institute of Geochemistry, Mineralogy and Mineral Resources, Charles University in Prague, Albertov 6, 128 43 Prague 2, Czech Republic
| | - H G M Edwards
- Department of Physics and Astronomy, Space Sciences Research Centre, University of Leicester, Leicester LE1 7RH, UK
| | - I Hutchinson
- Department of Physics and Astronomy, Space Sciences Research Centre, University of Leicester, Leicester LE1 7RH, UK
| | - C Ascaso
- Museo Nacional de Ciencias Naturales, CSIC, c/ Serrano 115 dpdo., 28006 Madrid, Spain
| | - J Wierzchos
- Museo Nacional de Ciencias Naturales, CSIC, c/ Serrano 115 dpdo., 28006 Madrid, Spain
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22
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Siljeström S, Freissinet C, Goesmann F, Steininger H, Goetz W, Steele A, Amundsen H. Comparison of prototype and laboratory experiments on MOMA GCMS: results from the AMASE11 campaign. ASTROBIOLOGY 2014; 14:780-797. [PMID: 25238325 DOI: 10.1089/ast.2014.1197] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
The characterization of any organic molecules on Mars is a top-priority objective for the ExoMars European Space Agency-Russian Federal Space Agency joint mission. The main instrument for organic analysis on the ExoMars rover is the Mars Organic Molecule Analyzer (MOMA). In preparation for the upcoming mission in 2018, different Mars analog samples are studied with MOMA and include samples collected during the Arctic Mars Analog Svalbard Expedition (AMASE) to Svalbard, Norway. In this paper, we present results obtained from two different Mars analog sites visited during AMASE11, Colletthøgda and Botniahalvøya. Measurements were performed on the samples during AMASE11 with a MOMA gas chromatograph (GC) prototype connected to a commercial mass spectrometer (MS) and later in home institutions with commercial pyrolysis-GCMS instruments. In addition, derivatization experiments were performed on the samples during AMASE11 and in the laboratory. Three different samples were studied from the Colletthøgda that included one evaporite and two carbonate-bearing samples. Only a single sample was studied from the Botniahalvøya site, a weathered basalt covered by a shiny surface consisting of manganese and iron oxides. Organic molecules were detected in all four samples and included aromatics, long-chained hydrocarbons, amino acids, nucleobases, sugars, and carboxylic acids. Both pyrolysis and derivatization indicated the presence of extinct biota by the detection of carboxylic acids in the samples from Colletthøgda, while the presence of amino acids, nucleobases, carboxylic acids, and sugars indicated an active biota in the sample from Botniahalvøya. The results obtained with the prototype flight model in the field coupled with repeat measurements with commercial instruments within the laboratory were reassuringly similar. This demonstrates the performance of the MOMA instrument and validates that the instrument will aid researchers in their efforts to answer fundamental questions regarding the speciation and possible source of organic content on Mars.
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Affiliation(s)
- Sandra Siljeström
- 1 Department of Chemistry, Materials and Surfaces, SP Technical Research Institute of Sweden , Borås, Sweden
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23
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Cumbers J, Rothschild LJ. Salt tolerance and polyphyly in the cyanobacterium Chroococcidiopsis (Pleurocapsales). JOURNAL OF PHYCOLOGY 2014; 50:472-82. [PMID: 26988320 DOI: 10.1111/jpy.12169] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2013] [Accepted: 12/16/2013] [Indexed: 05/19/2023]
Abstract
Chroococcidiopsis Geitler (Geitler 1933) is a genus of cyanobacteria containing desiccation and radiation resistant strains. Members of the genus live in habitats ranging from hot and cold deserts to fresh and saltwater environments. Morphology and cell division pattern have historically been used to define the genus. To better understand the evolution and ability of the Chroococcidiopsis genus to survive in diverse environments we investigated how salt tolerance varies among 15 strains previously isolated from different locations, and if salt tolerant strains are monophyletic to those isolated from freshwater and land environments. Four markers were sequenced from these 15 strains, the 16S rRNA, rbcL, desC1, and gltX genes. Phylogenetic trees were generated which identified a distinct clade of salt-tolerant strains. This study demonstrates that the genus is polyphyletic based on saltwater and freshwater phenotypes. To understand the resistance to salt in more details, the strains were grown on a range of sea salt concentrations which demonstrated that the freshwater strains were salt-intolerant whilst the saltwater strains required salt for growth. This study shows an increased resolution of the phylogeny of Chroococcidiopsis and provides further evidence that the genus is polyphyletic and should be reclassified to improve clarity in the literature.
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Affiliation(s)
- John Cumbers
- NASA Ames Space Portal/SynBioBeta, NASA Ames Research Center, Mail Stop 555-2, P.O. Box 1, Moffett Field, California, 94035, USA
- Department of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Box G-W, Providence, Rhode Island, 02912, USA
| | - Lynn J Rothschild
- Department of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Box G-W, Providence, Rhode Island, 02912, USA
- Biospheric Science Branch, NASA Ames Research Center, Mail Stop 239-20, P.O. Box 1, Moffett Field, California, 94035, USA
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24
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Perchlorate and halophilic prokaryotes: implications for possible halophilic life on Mars. Extremophiles 2013; 18:75-80. [PMID: 24150694 DOI: 10.1007/s00792-013-0594-9] [Citation(s) in RCA: 55] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2013] [Accepted: 10/10/2013] [Indexed: 10/26/2022]
Abstract
In view of the finding of perchlorate among the salts detected by the Phoenix Lander on Mars, we investigated the relationships of halophilic heterotrophic microorganisms (archaea of the family Halobacteriaceae and the bacterium Halomonas elongata) toward perchlorate. All strains tested grew well in NaCl-based media containing 0.4 M perchlorate, but at the highest perchlorate concentrations, tested cells were swollen or distorted. Some species (Haloferax mediterranei, Haloferax denitrificans, Haloferax gibbonsii, Haloarcula marismortui, Haloarcula vallismortis) could use perchlorate as an electron acceptor for anaerobic growth. Although perchlorate is highly oxidizing, its presence at a concentration of 0.2 M for up to 2 weeks did not negatively affect the ability of a yeast extract-based medium to support growth of the archaeon Halobacterium salinarum. These findings show that presence of perchlorate among the salts on Mars does not preclude the possibility of halophilic life. If indeed the liquid brines that may exist on Mars are inhabited by salt-requiring or salt-tolerant microorganisms similar to the halophiles on Earth, presence of perchlorate may even be stimulatory when it can serve as an electron acceptor for respiratory activity in the anaerobic Martian environment.
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25
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Dickson JL, Head JW, Levy JS, Marchant DR. Don Juan Pond, Antarctica: near-surface CaCl(2)-brine feeding Earth's most saline lake and implications for Mars. Sci Rep 2013; 3:1166. [PMID: 23378901 PMCID: PMC3559074 DOI: 10.1038/srep01166] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2012] [Accepted: 12/19/2012] [Indexed: 11/25/2022] Open
Abstract
The discovery on Mars of recurring slope lineae (RSL), thought to represent seasonal brines, has sparked interest in analogous environments on Earth. We report on new studies of Don Juan Pond (DJP), which exists at the upper limit of ephemeral water in the McMurdo Dry Valleys (MDV) of Antarctica, and is adjacent to several steep-sloped water tracks, the closest analog for RSL. The source of DJP has been interpreted to be deep groundwater. We present time-lapse data and meteorological measurements that confirm deliquescence within the DJP watershed and show that this, together with small amounts of meltwater, are capable of generating brines that control summertime water levels. Groundwater input was not observed. In addition to providing an analog for RSL formation, CaCl2 brines and chloride deposits in basins may provide clues to the origin of ancient chloride deposits on Mars dating from the transition period from “warm/wet” to “cold/dry” climates.
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Affiliation(s)
- James L Dickson
- Department of Geological Sciences, Brown University, Providence, Rhode Island 02912, USA.
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26
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Dalton JB, Pitman KM. Low temperature optical constants of some hydrated sulfates relevant to planetary surfaces. ACTA ACUST UNITED AC 2012. [DOI: 10.1029/2011je004036] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Kixmüller D, Greie JC. An ATP-driven potassium pump promotes long-term survival of Halobacterium salinarum within salt crystals. ENVIRONMENTAL MICROBIOLOGY REPORTS 2012; 4:234-241. [PMID: 23757278 DOI: 10.1111/j.1758-2229.2012.00326.x] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Many extremely halophilic archaea belonging to the Halobacteriales have remarkable longevity. They are even known to persist for millions of years within fluid inclusions of salt crystals. However, the key systems responsible for this remarkable ability and the underlying physiological mechanisms have not yet been deciphered. This study revealed that the ATP-dependent K(+) uptake system KdpFABC of Halobacterium salinarum is essential for survival under desiccation and salt crystal inclusion and, thus, can be identified as at least one of these systems in this organism. The presence of the kdp genes promoted survival of H. salinarum entombed in halite, compared with cells in which these genes were deleted. Expression of the kdp operon was found to be induced already under desiccating conditions without halite entombment. The morphology of cells included in halite resembled that of cells grown under potassium limitation. Therefore, a steady potassium supply, even under unfavourable energetic conditions, plays a key role in long-term survival and desiccation tolerance.
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Affiliation(s)
- Dorthe Kixmüller
- Department for Biology/Chemistry, University of Osnabrück, 49069 Osnabrück, Germany
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28
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Dartnell LR, Storrie-Lombardi MC, Mullineaux CW, Ruban AV, Wright G, Griffiths AD, Muller JP, Ward JM. Degradation of cyanobacterial biosignatures by ionizing radiation. ASTROBIOLOGY 2011; 11:997-1016. [PMID: 22149884 DOI: 10.1089/ast.2011.0663] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Primitive photosynthetic microorganisms, either dormant or dead, may remain today on the martian surface, akin to terrestrial cyanobacteria surviving endolithically in martian analog sites on Earth such as the Antarctic Dry Valleys and the Atacama Desert. Potential markers of martian photoautotrophs include the red edge of chlorophyll reflectance spectra or fluorescence emission from systems of light-harvesting pigments. Such biosignatures, however, would be modified and degraded by long-term exposure to ionizing radiation from the unshielded cosmic ray flux onto the martian surface. In this initial study into this issue, three analytical techniques--absorbance, reflectance, and fluorescence spectroscopy--were employed to determine the progression of the radiolytic destruction of cyanobacteria. The pattern of signal loss for chlorophyll reflection and fluorescence from several biomolecules is characterized and quantified after increasing exposures to ionizing gamma radiation. This allows estimation of the degradation rates of cyanobacterial biosignatures on the martian surface and the identification of promising detectable fluorescent break-down products.
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Affiliation(s)
- Lewis R Dartnell
- UCL Institute for Origins, University College London, London, UK.
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29
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Vítek P, Edwards HGM, Jehlička J, Cox R. Evaluation of portable Raman instrumentation for identification of β-carotene and mellitic acid in two-component mixtures with halite. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2011; 80:32-35. [PMID: 21296611 DOI: 10.1016/j.saa.2011.01.003] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2010] [Revised: 12/17/2010] [Accepted: 01/06/2011] [Indexed: 05/30/2023]
Abstract
Recently, portable Raman instrumentation has been in demand for geosciences and for future planetary exploration for the identification of both organic and inorganic compounds in situ on Earth and on other planetary bodies, especially on Mars. Here we present the results of the analysis of halite/β-carotene and halite/mellitic acid mixtures, performed by miniaturized Raman instrumentation equipped with 785 and 1064 nm excitation. Various proportions of organics in the halite matrix were examined. The lowest concentration of β-carotene detected using the 785 nm laser was 1 mg kg(-1), with slightly better signals observed with shorter exposure times compared with the bench instrument using the same excitation wavelength. Mellitic acid was identified at the concentration level 10 g kg(-1). The 1064 nm excitation provided a lower sensitivity towards low concentration when compared with the 785 nm excitation.
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Affiliation(s)
- P Vítek
- Institute of Geochemistry, Mineralogy and Mineral Resources, Charles University in Prague, Prague, Czech Republic.
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Cousins CR, Crawford IA. Volcano-ice interaction as a microbial habitat on Earth and Mars. ASTROBIOLOGY 2011; 11:695-710. [PMID: 21877914 DOI: 10.1089/ast.2010.0550] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Volcano-ice interaction has been a widespread geological process on Earth that continues to occur to the present day. The interaction between volcanic activity and ice can generate substantial quantities of liquid water, together with steep thermal and geochemical gradients typical of hydrothermal systems. Environments available for microbial colonization within glaciovolcanic systems are wide-ranging and include the basaltic lava edifice, subglacial caldera meltwater lakes, glacier caves, and subsurface hydrothermal systems. There is widespread evidence of putative volcano-ice interaction on Mars throughout its history and at a range of latitudes. Therefore, it is possible that life on Mars may have exploited these habitats, much in the same way as has been observed on Earth. The sedimentary and mineralogical deposits resulting from volcano-ice interaction have the potential to preserve evidence of any indigenous microbial populations. These include jökulhlaup (subglacial outflow) sedimentary deposits, hydrothermal mineral deposits, basaltic lava flows, and subglacial lacustrine deposits. Here, we briefly review the evidence for volcano-ice interactions on Mars and discuss the geomicrobiology of volcano-ice habitats on Earth. In addition, we explore the potential for the detection of these environments on Mars and any biosignatures these deposits may contain.
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Affiliation(s)
- Claire R Cousins
- Department of Earth and Planetary Sciences, Birkbeck College, University of London, London, UK.
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Wierzchos J, Cámara B, de Los Ríos A, Davila AF, Sánchez Almazo IM, Artieda O, Wierzchos K, Gómez-Silva B, McKay C, Ascaso C. Microbial colonization of Ca-sulfate crusts in the hyperarid core of the Atacama Desert: implications for the search for life on Mars. GEOBIOLOGY 2011; 9:44-60. [PMID: 20726901 DOI: 10.1111/j.1472-4669.2010.00254.x] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
The scarcity of liquid water in the hyperarid core of the Atacama Desert makes this region one of the most challenging environments for life on Earth. The low numbers of microbial cells in the soils suggest that within the Atacama Desert lies the dry limit for life on our planet. Here, we show that the Ca-sulfate crusts of this hyperarid core are the habitats of lithobiontic micro-organisms. This microporous, translucent substrate is colonized by epilithic lichens, as well as endolithic free-living algae, fungal hyphae, cyanobacteria and non photosynthetic bacteria. We also report a novel type of endolithic community, "hypoendoliths", colonizing the undermost layer of the crusts. The colonization of gypsum crusts within the hyperarid core appears to be controlled by the moisture regime. Our data shows that the threshold for colonization is crossed within the dry core, with abundant colonization in gypsum crusts at one study site, while crusts at a drier site are virtually devoid of life. We show that the cumulative time in 1 year of relative humidity (RH) above 60% is the best parameter to explain the difference in colonization between both sites. This is supported by controlled humidity experiments, where we show that colonies of endolithic cyanobacteria in the Ca-sulfate crust undergo imbibition process at RH >60%. Assuming that life once arose on Mars, it is conceivable that Martian micro-organisms sought refuge in similar isolated evaporite microenvironments during their last struggle for life as their planet turned arid.
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Affiliation(s)
- J Wierzchos
- Departamento de Ecologia de Sistemas, Instituto de Recursos Naturales, CCMA, CSIC, Madrid, Spain.
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Jehlicka J, Edwards HGM, Culka A. Using portable Raman spectrometers for the identification of organic compounds at low temperatures and high altitudes: exobiological applications. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2010; 368:3109-3125. [PMID: 20529948 DOI: 10.1098/rsta.2010.0075] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
Organic minerals, organic acids and NH-containing organic molecules represent important target molecules for astrobiology. Here, we present the results of the evaluation of a portable hand-held Raman spectrometer to detect these organic compounds outdoors under field conditions. These measurements were carried out during the February-March 2009 winter period in Austrian Alpine sites at temperatures ranging between -5 and -25 degrees C. The compounds investigated were detected under field conditions and their main Raman spectral features were observed unambiguously at their correct reference wavenumber positions. The results obtained demonstrate that a miniaturized Raman spectrometer equipped with 785 nm excitation could be applied with advantage as a key instrument for investigating the presence of organic minerals, organic acids and nitrogen-containing organic compounds outdoors under terrestrial low-temperature conditions. Within the payload designed by ESA and NASA for several missions focusing on Mars, Titan, Europa and other extraterrestrial bodies, Raman spectroscopy can be proposed as an important non-destructive analytical tool for the in situ identification of organic compounds relevant to life detection on planetary and moon surfaces or near subsurfaces.
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Affiliation(s)
- J Jehlicka
- Institute of Geochemistry, Mineralogy and Mineral Resources, Charles University in Prague, Albertov 6, 128 43 Prague 2, Czech Republic.
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Vítek P, Edwards HGM, Jehlicka J, Ascaso C, De los Ríos A, Valea S, Jorge-Villar SE, Davila AF, Wierzchos J. Microbial colonization of halite from the hyper-arid Atacama Desert studied by Raman spectroscopy. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2010; 368:3205-21. [PMID: 20529955 DOI: 10.1098/rsta.2010.0059] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
The hyper-arid core of the Atacama Desert (Chile) is the driest place on Earth and is considered a close analogue to the extremely arid conditions on the surface of Mars. Microbial life is very rare in soils of this hyper-arid region, and autotrophic micro-organisms are virtually absent. Instead, photosynthetic micro-organisms have successfully colonized the interior of halite crusts, which are widespread in the Atacama Desert. These endoevaporitic colonies are an example of life that has adapted to the extreme dryness by colonizing the interior of rocks that provide enhanced moisture conditions. As such, these colonies represent a novel example of potential life on Mars. Here, we present non-destructive Raman spectroscopical identification of these colonies and their organic remnants. Spectral signatures revealed the presence of UV-protective biomolecules as well as light-harvesting pigments pointing to photosynthetic activity. Compounds of biogenic origin identified within these rocks differed depending on the origins of specimens from particular areas in the desert, with differing environmental conditions. Our results also demonstrate the capability of Raman spectroscopy to identify biomarkers within rocks that have a strong astrobiological potential.
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Affiliation(s)
- P Vítek
- Institute of Geochemistry, Mineralogy and Mineral Resources, Charles University in Prague, Albertov 6, 128 43 Prague 2, Czech Republic.
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González-Muñoz MT, Rodriguez-Navarro C, Martínez-Ruiz F, Arias JM, Merroun ML, Rodriguez-Gallego M. Bacterial biomineralization: new insights from Myxococcus-induced mineral precipitation. ACTA ACUST UNITED AC 2010. [DOI: 10.1144/sp336.3] [Citation(s) in RCA: 68] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
AbstractBacteria have contributed to the formation of minerals since the advent of life on Earth. Bacterial biomineralization plays a critical role on biogeochemical cycles and has important technological and environmental applications. Despite the numerous efforts to better understand how bacteria induce/mediate or control mineralization, our current knowledge is far from complete. Considering that the number of recent publications on bacterial biomineralization has been overwhelming, here we attempt to show the importance of bacteria–mineral interactions by focusing in a single bacterial genus, Myxococcus, which displays an unusual capacity of producing minerals of varying compositions and morphologies. First, an overview of the recent history of bacterial mineralization, the most common bacteriogenic minerals and current models on bacterial biomineralization is presented. Afterwards a description of myxobacteria is presented, followed by a section where Myxococcus-induced precipitation of a number of phosphates, carbonates, sulphates, chlorides, oxalates and silicates is described and discussed in lieu of the information presented in the first part. As concluding remarks, implications of bacterial mineralization and perspectives for future research are outlined. This review strives to show that the mechanisms which control bacterial biomineralization are not mineral- or bacterial-specific. On the contrary, they appear to be universal and depend on the environment in which bacteria dwell.
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Affiliation(s)
| | - Carlos Rodriguez-Navarro
- Departamento de Mineralogía y Petrología, Universidad de Granada, Fuentenueva s/n, 18002, Granada, Spain
| | - Francisca Martínez-Ruiz
- Instituto Andaluz de Ciencias de la Tierra, CSIC – Universidad de Granada, Fuentenueva s/n, 18002, Granada, Spain
| | - Jose Maria Arias
- Departamento de Microbiología, Universidad de Granada, Fuentenueva s/n, 18002, Granada, Spain
| | - Mohamed L. Merroun
- Institute of Radiochemistry, Forschungszentrum Dresden-Rossendorf, D–01314, Dresden, Germany; Present address: Departamento de Microbiología, Universidad de Granada, Granada, Spain
| | - Manuel Rodriguez-Gallego
- Departamento de Mineralogía y Petrología, Universidad de Granada, Fuentenueva s/n, 18002, Granada, Spain
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Storrie-Lombardi MC, Muller JP, Fisk MR, Cousins C, Sattler B, Griffiths AD, Coates AJ. Laser-Induced Fluorescence Emission (L.I.F.E.): searching for Mars organics with a UV-enhanced PanCam. ASTROBIOLOGY 2009; 9:953-964. [PMID: 20041748 DOI: 10.1089/ast.2009.0353] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
The European Space Agency will launch the ExoMars mission in 2016 with a primary goal of surveying the martian subsurface for evidence of organic material. We have recently investigated the utility of including either a 365 nm light-emitting diode or a 375 nm laser light source in the ExoMars rover panoramic camera (PanCam). Such a modification would make it feasible to monitor rover drill cuttings optically for the fluorescence signatures of aromatic organic molecules and map the distribution of polycyclic aromatic hydrocarbons (PAHs) as a function of depth to the 2 m limit of the ExoMars drill. The technique described requires no sample preparation, does not consume irreplaceable resources, and would allow mission control to prioritize deployment of organic detection experiments that require sample destruction, expenditure of non-replaceable consumables, or both. We report here for the first time laser-induced fluorescence emission (L.I.F.E.) imaging detection limits for anthracene, pyrene, and perylene targets doped onto a Mars analog granular peridotite with a 375 nm Nichia laser diode in optically uncorrected wide-angle mode. Data were collected via the Beagle 2 PanCam backup filter wheel fitted with original blue (440 nm), green (530 nm), and red (670 nm) filters. All three PAH species can be detected with the PanCam green (530 nm) filter. Detection limits in the green band for signal-to-noise ratios (S/N) > 10 are 49 parts per million (ppm) for anthracene, 145 ppm for pyrene, and 20 ppm for perylene. The anthracene detection limit improves to 7 ppm with use of the PanCam blue filter. We discuss soil-dependent detection limit constraints; use of UV excitation with other rover cameras, which provides higher spatial resolution; and the advantages of focused and wide-angle laser modes. Finally, we discuss application of L.I.F.E. techniques at multiple wavelengths for exploration of Mars analog extreme environments on Earth, including Icelandic hydrothermally altered basalts and the ice-covered lakes and glaciers of Dronning Maud Land, Antarctica.
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Identification of β-carotene in an evaporitic matrix—evaluation of Raman spectroscopic analysis for astrobiological research on Mars. Anal Bioanal Chem 2009; 393:1967-75. [DOI: 10.1007/s00216-009-2677-0] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2008] [Revised: 02/02/2009] [Accepted: 02/03/2009] [Indexed: 10/21/2022]
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Wierzchos J, Ascaso C, McKay CP. Endolithic cyanobacteria in halite rocks from the hyperarid core of the Atacama Desert. ASTROBIOLOGY 2006; 6:415-22. [PMID: 16805697 DOI: 10.1089/ast.2006.6.415] [Citation(s) in RCA: 151] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
In the driest parts of the Atacama Desert there are no visible life forms on soil or rock surfaces. The soil in this region contains only minute traces of bacteria distributed in patches, and conditions are too dry for cyanobacteria that live under translucent stones. Here we show that halite evaporite rocks from the driest part of the Atacama Desert are colonized by cyanobacteria. This colonization takes place just a few millimeters beneath the rock surface, occupying spaces among salt crystals. Our work reveals that these communities are composed of extremely resistant Chroococcidiopsis morphospecies of cyanobacteria and associated heterotrophic bacteria. This newly discovered endolithic environment is an extremely dry and, at the same time, saline microbial habitat. Photosynthetic microorganisms within dry evaporite rocks could be an important and previously unrecognized target for the search for life within our Solar System.
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Affiliation(s)
- Jacek Wierzchos
- Servei de Microscopia Electrònica, Universitat de Lleida, Lleida, Spain.
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Edwards HGM, Mohsin MA, Sadooni FN, Nik Hassan NF, Munshi T. Life in the sabkha: Raman spectroscopy of halotrophic extremophiles of relevance to planetary exploration. Anal Bioanal Chem 2006; 385:46-56. [PMID: 16607492 DOI: 10.1007/s00216-006-0396-3] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2005] [Revised: 02/21/2006] [Accepted: 02/22/2006] [Indexed: 10/24/2022]
Abstract
The Raman spectroscopic biosignatures of halotrophic cyanobacterial extremophiles from sabkha evaporitic saltpans are reported for the first time and ideas about the possible survival strategies in operation have been forthcoming. The biochemicals produced by the cyanobacteria which colonise the interfaces between large plates of clear selenitic gypsum, halite, and dolomitized calcium carbonates in the centre of the salt pans are identifiably different from those which are produced by benthic cyanobacterial mats colonising the surface of the salt pan edges in the intertidal zone. The prediction that similar geological formations would have been present on early Mars and which could now be underlying the highly peroxidised regolith on the surface of the planet has been confirmed by recent satellite observations from Mars orbit and by localised traverses by robotic surface rovers. The successful adoption of miniaturised Raman spectroscopic instrumentation as part of a scientific package for detection of extant life or biomolecular traces of extinct life on proposed future Mars missions will depend critically on interpretation of data from terrestrial Mars analogues such as sabkhas, of which the current study is an example.
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Affiliation(s)
- Howell G M Edwards
- Chemical and Forensic Sciences, School of Life Sciences, University of Bradford, Bradford, BD7 1DP, UK.
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Diaz B, Schulze-Makuch D. Microbial survival rates of Escherichia coli and Deinococcus radiodurans under low temperature, low pressure, and UV-Irradiation conditions, and their relevance to possible Martian life. ASTROBIOLOGY 2006; 6:332-47. [PMID: 16689650 DOI: 10.1089/ast.2006.6.332] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
Viability rates were determined for microbial populations of Escherichia coli and Deinococcus radiodurans under the environmental stresses of low temperature (-35 degrees C), low-pressure conditions (83.3 kPa), and ultraviolet (UV) irradiation (37 W/m(2)). During the stress tests the organisms were suspended in saltwater soil and freshwater soil media, at variable burial depths, and in seawater. Microbial populations of both organisms were most susceptible to dehydration stress associated with low-pressure conditions, and to UV irradiation. However, suspension in a liquid water medium and burial at larger depths (5 cm) improved survival rates markedly. Our results indicate that planetary surfaces that possess little to no atmosphere and have low water availability do not constitute a favorable environment for terrestrial microorganisms.
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Affiliation(s)
- Benjamin Diaz
- Program of Environmental Toxicology, Department of Microbiology, Cornell University, Ithaca, New York, USA
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Abstract
Raman spectroscopy is proposed as a valuable analytical technique for planetary exploration because it is sensitive to organic and inorganic compounds and able to unambiguously identify key spectral markers in a mixture of biological and geological components; furthermore, sample manipulation is not required and any size of sample can be studied without chemical or mechanical pretreatment. NASA and ESA are considering the adoption of miniaturised Raman spectrometers for inclusion in suites of analytical instrumentation to be placed on robotic landers on Mars in the near future to search for extinct or extant life signals. In this paper we review the advantages and limitations of Raman spectroscopy for the analysis of complex specimens with relevance to the detection of bio- and geomarkers in extremophilic organisms which are considered to be terrestrial analogues of possible extraterrestial life that could have developed on planetary surfaces.
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Ellery A, Wynn-Williams D. Why Raman spectroscopy on Mars?--a case of the right tool for the right job. ASTROBIOLOGY 2003; 3:565-579. [PMID: 14678665 DOI: 10.1089/153110703322610654] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
We provide a scientific rationale for the astrobiological investigation of Mars. We suggest that, given practical constraints, the most promising locations for the search for former life on Mars are palaeolake craters and the evaporite deposits that may reside within them. We suggest that Raman spectroscopy offers a promising tool for the detection of evidence of former (or extant) biota on Mars. In particular, we highlight the detection of hopanoids as long-lived bacterial cell wall products and photosynthetic pigments as the most promising targets. We further suggest that Raman spectroscopy as a fibre optic-based instrument lends itself to flexible planetary deployment.
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Affiliation(s)
- Alex Ellery
- School of Engineering, Kingston University, London, United Kingdom.
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Dalton JB. Spectral behavior of hydrated sulfate salts: implications for Europa mission spectrometer design. ASTROBIOLOGY 2003; 3:771-784. [PMID: 14987482 DOI: 10.1089/153110703322736097] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Remote sensing of the surface of Europa with near-infrared instruments has suggested the presence of hydrated materials, including sulfate salts. Attention has been focused on these salts for the information they might yield regarding the evolution of a putative interior ocean, and the evaluation of its astrobiological potential. These materials exhibit distinct infrared absorption features due to bound water. The interactions of this water with the host molecules lead to fine structure that can be used to discriminate among these materials on the basis of their spectral behavior. This fine structure is even more pronounced at the low temperatures prevalent on icy satellites. Examination of hydrated sulfate salt spectra measured under cryogenic temperature conditions provides realistic constraints for future remote-sensing missions to Europa. In particular, it suggests that a spectrometer system capable of 2-5 nm spectral resolution or better, with a spatial resolution approaching 100 m, would be able to differentiate among proposed hydrated surface materials, if present, and constrain their distributions across the surface. Such information would provide valuable insights into the evolutionary history of Europa.
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Affiliation(s)
- James Bradley Dalton
- SETI Institute, NASA Ames Research Center, Moffett Field, California 94035-1000, USA.
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Parnell J, Mazzini A, Honghan C. Fluid inclusion studies of chemosynthetic carbonates: strategy for seeking life on Mars. ASTROBIOLOGY 2002; 2:43-57. [PMID: 12449854 DOI: 10.1089/153110702753621330] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Fluid inclusions in minerals hold the potential to provide important data on the chemistry of the ambient fluids during mineral precipitation. Especially interesting to astrobiologists are inclusions in low-temperature minerals that may have been precipitated in the presence of microorganisms. We demonstrate that it is possible to obtain data from inclusions in chemosynthetic carbonates that precipitated by the oxidation of organic carbon around methane-bearing seepages. Chemosynthetic carbonates have been identified as a target rock for astrobiological exploration. Other surficial rock types identified as targets for astrobiological exploration include hydrothermal deposits, speleothems, stromatolites, tufas, and evaporites, each of which can contain fluid inclusions. Fracture systems below impact craters would also contain precipitates of minerals with fluid inclusions. As fluid inclusions are sealed microchambers, they preserve fluids in regions where water is now absent, such as regions of the martian surface. Although most inclusions are < 5 microns, the possibility to obtain data from the fluids, including biosignatures and physical remains of life, underscores the advantages of technological advances in the study of fluid inclusions. The crushing of bulk samples could release inclusion waters for analysis, which could be undertaken in situ on Mars.
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Affiliation(s)
- John Parnell
- Department of Geology and Petroleum Geology, University of Aberdeen King's College, Aberdeen AB24 3UE, U.K.
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Abstract
Each recent report of liquid water existing elsewhere in the Solar System has reverberated through the international press and excited the imagination of humankind. Why? Because in the past few decades we have come to realize that where there is liquid water on Earth, virtually no matter what the physical conditions, there is life. What we previously thought of as insurmountable physical and chemical barriers to life, we now see as yet another niche harbouring 'extremophiles'. This realization, coupled with new data on the survival of microbes in the space environment and modelling of the potential for transfer of life between celestial bodies, suggests that life could be more common than previously thought. Here we examine critically what it means to be an extremophile, and the implications of this for evolution, biotechnology and especially the search for life in the Universe.
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Affiliation(s)
- L J Rothschild
- NASA Ames Research Center, Moffett Field, California 94035-1000, USA.
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Abstract
Ultraviolet (UV) radiation has been an important environmental parameter during the evolution of life on Earth, both in its role as a mutagen and as a selective agent. This was probably especially true during the time from 3.8 to 2.5 billion years ago, when atmospheric ozone levels were less than 1% of present levels. Early Mars may not have had an "ozone shield" either, and it never developed a significant one. Even though Mars is farther away from the Sun than the Earth, a substantial surficial UV flux is present on Mars today. But organisms respond to dose rate, and on Mars, like on Earth, organisms would be exposed to diurnal variations in UV flux. Here we present data on the effect of diurnal patterns of UV flux on microbial ecosystems in nature, with an emphasis on photosynthesis and DNA synthesis effects. These results indicate that diurnal patterns of metabolism occur in nature with a dip in photosynthesis and DNA synthesis in the afternoon, in part regulated by UV flux. Thus, diurnal patterns must be studied in order to understand the effect of UV radiation in nature. The results of this work are significant to the success of human missions to Mars for several reasons. For example, human missions must include photosynthetic organisms for food production and likely oxygen production. An evolutionary approach suggests which organisms might be best suited for high UV fluxes. The diurnal aspect of these studies is critical. Terraforming is a potential goal of Mars exploration, and it will require studies of the effect of Martian UV fluxes, including their diurnal changes, on terrestrial organisms. Such studies may suggest that diurnal changes in UV only require mitigation at some times of day or year.
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Affiliation(s)
- L J Rothschild
- Ecosystem Science and Technology Branch, Mail Stop 239-20, NASA Ames Research Center, Moffett Field, CA, USA.
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Farmer JD, Des Marais DJ. Exploring for a record of ancient Martian life. JOURNAL OF GEOPHYSICAL RESEARCH 1999; 104:26977-95. [PMID: 11543200 DOI: 10.1029/1998je000540] [Citation(s) in RCA: 245] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
The immediate task facing exopaleontology is to define a strategy to explore Mars for a fossil record during the decade-long exploration program that lies ahead. Consideration of the quality of paleontological information preserved under different geological conditions is important if we are to develop a strategy with broad applicability. The preservation of microbial fossils is strongly influenced by the physical, chemical, and biological factors of the environment which, acting together, determine the types of information that will be captured and retained in the rock record. In detrital sedimentary systems, preservation is favored by rapid burial in fine-grained, clay-rich sediments. In chemical sedimentary systems, preservation is enhanced by rapid entombment in fine-grained chemical precipitates. For long-term preservation, host rocks must be composed of stable minerals that are resistant to chemical weathering and that form an impermeable matrix and closed chemical system to protect biosignatures from alteration during subsequent diagenesis or metamorphism. In this context, host rocks composed of highly ordered, chemically stable mineral phases, like silica (e.g., cherts) or phosphate (e.g., phosphorites), are especially favored. Such lithologies tend to have very long crustal residence times and, along with carbonates and shales, are the most common host rocks for the Precambrian microfossil record on Earth. Although we make the defensible assumption that Mars was more like the Earth early in its history, clearly, the geological and historical differences between the two planets are many. Such differences must be carefully considered when adapting an Earth-based strategy to Mars.
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Affiliation(s)
- J D Farmer
- Department of Geology, Arizona State University, Tempe, USA.
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Abstract
Ultraviolet radiation has provided an evolutionary challenge to life on Earth. Recent increases in surficial ultraviolet B fluxes have focused attention on the role of UV radiation in protistan ecology, cancer, and DNA damage. Exploiting this new wealth of data, I examine the possibility that ultraviolet radiation may have played a significant role in the evolution of the first eukaryotes, that is, protists. Protists probably arose well before the formation of a significant ozone shield, and thus were probably subjected to substantial ultraviolet A, ultraviolet B, and ultraviolet C fluxes early in their evolution. Evolution consists of the generation of heritable variations and the subsequent selection of these variants. Ultraviolet radiation has played a role both as a mutagen and as a selective agent. In its role as a mutagen, it may have been crucial in the origin of sex and as a driver of molecular evolution. As a selective agent, its influence has been broad. Discussed in this paper are the influence of ultraviolet radiation on biogeography, photosynthesis, and desiccation resistance.
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Affiliation(s)
- L J Rothschild
- Ecosystem Science and Technology Branch, NASA Ames Research Center, Moffett Field, California 94035-1000, USA.
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Cockell CS, Andrady AL. The Martian and extraterrestrial UV radiation environment--1. Biological and closed-loop ecosystem considerations. ACTA ASTRONAUTICA 1999; 44:53-62. [PMID: 11541762 DOI: 10.1016/s0094-5765(98)00186-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
The Martian surface is exposed to both UVC radiation (<280 nm) and higher doses of UVB (280-315 nm) compared to the surface of the Earth. Terrestrial organisms have not evolved to cope with such high levels of UVC and UVB and thus any attempts to introduce organisms to Mars, particularly in closed-loop life support systems that use ambient sunlight, must address this problem. Here we examine the UV radiation environment of Mars with respect to biological systems. Action spectra and UV surface fluxes are used to estimate the UV stress that both DNA and chloroplasts would experience. From this vantage point it is possible to consider appropriate measures to address the problem of the Martian UV environment for future long term human exploration and settlement strategies. Some prospects for improving the UV tolerance of organisms are also discussed. Existing artificial ecosystems such as Biosphere 2 can provide some insights into design strategies pertinent to high UV environments. Some prospects for improving the UV tolerance of organisms are also discussed. The data also have implications for the establishment of closed-loop ecosystems using natural sunlight on the lunar surface and elsewhere in the Solar System.
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Affiliation(s)
- C S Cockell
- Department of Plant Biology, Carnegie Institute of Washington, Stanford, CA 94035-1297, USA.
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Litchfield CD. Survival strategies for microorganisms in hypersaline environments and their relevance to life on early Mars. METEORITICS & PLANETARY SCIENCE 1998; 33:813-819. [PMID: 11543079 DOI: 10.1111/j.1945-5100.1998.tb01688.x] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
There are two groups of microorganisms that live and grow in hypersaline (>10-15% NaCl) environments: the halophilic Archaea and the halotolerant Bacteria and algae. In order to grow and reproduce in such high-salt, low-water activity environments, these organisms have made basic biochemical adaptations in their proteins, osmoregulation mechanisms, nucleic acids, and lipids. The environment of the halophiles and especially how the halophilic Archaea have adapted to that environment are reviewed in this paper. Along with this review is a brief description of how these adaptations could be important in the detection of life on early Mars assuming similar types of salts and a carbon-based life.
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Affiliation(s)
- C D Litchfield
- Department of Biology, George Mason University, Fairfax, Virginia 22030, USA.
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