Hydrogenases for biological hydrogen production

Ultrathin Film Antimony-Doped Tin Oxide Prevents [NiFe] Hydrogenase Inactivation at High Electrode Potentials

For hydrogenases to serve as effective electrocatalysts in hydrogen biotechnological devices, such as enzymatic fuel cells, it is imperative to design electrodes that facilitate stable and functional enzyme immobilization, efficient substrate accessibility, and effective interfacial electron transfer. Recent years have seen considerable advancements in this area, particularly concerning hydrogenases. However, a significant limitation remains: the inactivation of hydrogenases at high oxidative potentials across most developed electrodes. Addressing this issue necessitates a thorough understanding of the interactions between the enzyme and the electrode surface. In this study, we employ ATR-IR spectroscopy combined with electrochemistry in situ to investigate the interaction mechanisms, electrocatalytic behavior, and stability of the oxygen-tolerant membrane-bound [NiFe] hydrogenase from Cupriavidus necator (MBH), which features a His-tag on its small subunit C-terminus. Antimony-doped tin oxide (ATO) thin films were selected as electrodes due to their protein compatibility, suitable potential window, conductivity, and transparency, making them an ideal platform for spectroelectrochemical measurements. Our comprehensive examination of the physiological and electrochemical processes of [NiFe] MBH on ATO thin film electrodes demonstrates that by tuning the electron transport properties of the ATO thin film, we can prevent MBH inactivation at extended oxidative potentials while maintaining direct electron transfer between the enzyme and the electrode.

Boosting hydrogen production in Rhodospirillum rubrum by syngas-driven photoheterotrophic adaptive evolution

Rhodospirillum rubrum is a photosynthetic purple non-sulphur bacterium with great potential to be used for complex waste valorisation in biotechnological applications due to its metabolic versatility. This study investigates the production of hydrogen (H2) and polyhydroxyalkanoates (PHA) by R. rubrum from syngas under photoheterotrophic conditions. An adaptive laboratory evolution strategy (ALE) has been carried out to improve the yield of the process. After 200 generations, two evolved strains were selected that showed reduced lag phase and enhanced poly-3-hydroxybutyrate (PHB) and H2 synthesis compared to the parental strain. Genomic analysis of the photo-adapted (PA) variants showed four genes with single point mutations, including the photosynthesis gene expression regulator PpsR. The proteome of the variants suggested that the adapted variants overproduced H2 due to a more efficient CO oxidation through the CO-dehydrogenase enzyme complex and confirmed that energy acquisition was enhanced through overexpression of the photosynthetic system and metal cofactors essential for pigment biosynthesis.

Unveiling the Low-Lying Spin States of [Fe3S4] Clusters via the Extended Broken-Symmetry Method

Photosynthetic water splitting, when synergized with hydrogen production catalyzed by hydrogenases, emerges as a promising avenue for clean and renewable energy. However, theoretical calculations have faced challenges in elucidating the low-lying spin states of iron-sulfur clusters, which are integral components of hydrogenases. To address this challenge, we employ the Extended Broken-Symmetry method for the computation of the cubane-[Fe3S4] cluster within the [FeNi] hydrogenase enzyme. This approach rectifies the error caused by spin contamination, allowing us to obtain the magnetic exchange coupling constant and the energy level of the low-lying state. We find that the Extended Broken-Symmetry method provides more accurate results for differences in bond length and the magnetic coupling constant. This accuracy assists in reconstructing the low-spin ground state force and determining the geometric structure of the ground state. By utilizing the Extended Broken-Symmetry method, we further highlight the significance of the geometric arrangement of metal centers in the cluster's properties and gain deeper insights into the magnetic properties of transition metal iron-sulfur clusters at the reaction centers of hydrogenases. This research illuminates the untapped potential of hydrogenases and their promising role in the future of photosynthesis and sustainable energy production.

Calculation of carbon emissions in wastewater treatment and its neutralization measures: A review

As the pursuit of "carbon neutrality" gains momentum, the emphasis on low-carbon solutions, emphasizing energy conservation and resource reuse, has introduced fresh challenges to conventional wastewater treatment approaches. Precisely evaluating carbon emissions in urban water supply and drainage systems, wastewater treatment plants, and establishing carbon-neutral operating models has become a pivotal concern in the future of wastewater treatment. Regrettably, limited research has been devoted to carbon accounting and the development of carbon-neutral strategies for wastewater treatment. In this review, to facilitate comprehensive carbon accounting, we initially recognizes direct and indirect carbon emission sources in the wastewater treatment process. We then provide an overview of several major carbon accounting methods and propose a carbon accounting framework. Furthermore, we advocate for a systemic perspective, highlighting that achieving carbon neutrality in wastewater treatment extends beyond the boundaries of wastewater treatment plants. We assess current technical measures both within and outside the plants that contribute to achieving carbon-neutral operations. Encouraging the application of intelligent algorithms for the multifaceted monitoring and control of wastewater treatment processes is paramount. Supporting resource and energy recycling is also essential, as is recognizing the benefits of synergistic wastewater treatment technologies. We advocate a systematic, multi-level planning approach that takes into account a wide range of factors. Our goal is to offer valuable insights and support for the practical implementation of water environment management within the framework of carbon neutrality, and to advance sustainable socio-economic development and contribute to a more environmentally responsible future.

Bioconversion of volatile fatty acids from organic wastes to produce high-value products by photosynthetic bacteria: A review

Anaerobic fermentation of organic waste to produce volatile fatty acids (VFAs) production is a relatively mature technology. VFAs can be used as a cheap and readily available carbon source by photosynthetic bacteria (PSB) to produce high value-added products, which are widely used in various applications. To better enhance the VFAs obtained from organic wastes for PSB to produce high value-added products, a comprehensive review is needed, which is currently not available. This review systematically summarizes the current status of microbial proteins, H2, poly-β-hydroxybutyrate (PHB), coenzyme Q10 (CoQ10), and 5-aminolevulinic acid (ALA) production by PSB utilizing VFAs as a carbon resource. Meanwhile, the metabolic pathways involved in the H2, PHB, CoQ10, and 5-ALA production by PSB were deeply explored. In addition, a systematic resource utilization pathway for PSB utilizing VFAs from anaerobic fermentation of organic wastes to produce high value-added products was proposed. Finally, the current challenges and priorities for future research were presented, such as the screening of efficient PSB strains, conducting large-scale experiments, high-value product separation, recovery, and purification, and the mining of metabolic pathways for the VFA utilization to generate high value-added products by PSB.

Extracellular self-photosensitizer combined with metal oxide-based nano bio-hybrid system encapsulated by alginate improves hydrogen production in the presence of oxygen

The photocatalytic nano-biohybrid systems have great potential for the conversion of solar energy to fermentative hydrogen production. Herein, a whole-cell nano-biohybrid system consisting of biosynthesized cadmium sulfide, Enterobacter aerogenes cells, and metal oxide nanoparticles was constructed. The system was encapsulated with sodium alginate and used for light-driven biohydrogen production under anaerobic and in the presence of oxygen conditions. After 48 h incubation in the presence of oxygen, the E. aerogenes cells with the encapsulated hybrid system yielded 2.7 mmol H2/mmol glucose, a 13.5-fold higher than that of the E. aerogenes cells without encapsulation. The encapsulated hybrid system could produce hydrogen for up to 96 h and could produce hydrogen even under natural sunlight conditions. These results revealed that efficient hydrogen production is possible in the presence of oxygen. Overall, the present study demonstrated the potential of using proper nano-biohybrid system with encapsulation for the production of hydrogen under ambient air condition.

Unlocking the high-rate continuous performance of fermentative hydrogen bioproduction from fruit and vegetable residues by modulating hydraulic retention time

Harnessing fruit-vegetable waste (FVW) as a resource to produce hydrogen via dark fermentation (DF) embraces the circular economy concept. However, there is still a need to upgrade continuous FVW-DF bioprocessing to enhance hydrogen production rates (HPR). This study aims to investigate the influence of the hydraulic retention time (HRT) on the DF of FVW by mixed culture. A stirred tank reactor under continuous mesophilic conditions was operated for 47 days with HRT stepwise reductions from 24 to 6 h, leading to organic loading rates between 47 and 188 g volatile solids (VS)/L-d. The optimum HRT of 9 h resulted in an unprecedented HPR from FVW of 11.8 NL/L-d, with a hydrogen yield of 95.6 NmL/g VS fed. Based on an overarching inspection of hydrogen production in conjunction with organic acids and carbohydrates analyses, it was hypothesized that the high FVW-to-biohydrogen conversion rate achieved was powered by lactate metabolism.

The material-microorganism interface in microbial hybrid electrocatalysis systems

This review presents a comprehensive summary of the material-microorganism interface in microbial hybrid electrocatalysis systems. Microbial hybrid electrocatalysis has been developed to combine the advantages of inorganic electrocatalysis and microbial catalysis. However, electron transfer at the interfaces between microorganisms and materials is a very critical issue that affects the efficiency of the system. Therefore, this review focuses on the electron transfer at the material-microorganism interface and the strategies for building efficient microorganism and material interfaces. We begin with a brief introduction of the electron transfer mechanism in both the bioanode and biocathode of bioelectrochemical systems to understand the material-microorganism interface. Next, we summarise the strategies for constructing efficient material-microorganism interfaces including material design and modification and bacterial engineering. We also discuss emerging studies on the bio-inorganic hybrid electrocatalysis system. Understanding the interface between electrode/active materials and the microorganisms, especially the electron transfer processes, could help to drive the evolution of material-microorganism hybrid electrocatalysis systems towards maturity.

Hydrogenase and Nitrogenase: Key Catalysts in Biohydrogen Production

Hydrogen with high energy content is considered to be a promising alternative clean energy source. Biohydrogen production through microbes provides a renewable and immense hydrogen supply by utilizing raw materials such as inexhaustible natural sunlight, water, and even organic waste, which is supposed to solve the two problems of "energy supply and environment protection" at the same time. Hydrogenases and nitrogenases are two classes of key enzymes involved in biohydrogen production and can be applied under different biological conditions. Both the research on enzymatic catalytic mechanisms and the innovations of enzymatic techniques are important and necessary for the application of biohydrogen production. In this review, we introduce the enzymatic structures related to biohydrogen production, summarize recent enzymatic and genetic engineering works to enhance hydrogen production, and describe the chemical efforts of novel synthetic artificial enzymes inspired by the two biocatalysts. Continual studies on the two types of enzymes in the future will further improve the efficiency of biohydrogen production and contribute to the economic feasibility of biohydrogen as an energy source.

Wastewater-derived biohydrogen: Critical analysis of related enzymatic processes at the research and large scales

Organic-rich wastewater is a feasible feedstock for biohydrogen production. Numerous review on the performance of microorganisms and the diversity of their communities during a biohydrogen process were published. However, there is still no in-depth overview of enzymes for biohydrogen production from wastewater and their scale-up applications. This review aims at providing an insightful exploration of critical discussion in terms of: (i) the roles and applications of enzymes in wastewater-based biohydrogen fermentation; (ii) systematical introduction to the enzymatic processes of photo fermentation and dark fermentation; (iii) parameters that affect enzymatic performances and measures for enzyme activity/ability enhancement; (iv) biohydrogen production bioreactors; as well as (v) enzymatic biohydrogen production systems and their larger scales application. Furthermore, to assess the best applications of enzymes in biohydrogen production from wastewater, existing problems and feasible future studies on the development of low-cost enzyme production methods and immobilized enzymes, the construction of multiple enzyme cooperation systems, the study of biohydrogen production mechanisms, more effective bioreactor exploration, larger scales enzymatic biohydrogen production, and the enhancement of enzyme activity or ability are also addressed.

Recent updates in biohydrogen production strategies and life-cycle assessment for sustainable future

Biohydrogen (bio-H₂) is regarded as a clean, non-toxic, energy carrier and has enormous potential for transforming fossil fuel-based economy. The development of a continuous high-rate H₂ production with low-cost economics following an environmentally friendly approach should be admired for technology demonstration. Thus, the current review discusses the biotechnological and thermochemical pathways for H₂ production. Thermochemical conversion involves pyrolysis and gasification routes, while biotechnological involves light-dependent processes (e.g., direct and indirect photolysis, photo/ dark fermentation strategies). Moreover, environmentally friendly technologies can be created while utilizing renewable energy sources including lignocellulosic, wastewater, sludge, microalgae, and others, which are still being developed. Lifecycle assessment (LCA) evaluates and integrates the economic, environmental, and social performance of H₂ production from biomass, microalgae, and biochar. Moreover, system boundaries evaluation, i.e., global warming potential, acidification, eutrophication, and sensitivity analysis could lead in development of sustainable bioenergy transition with high economic and environmental benefits.

Roles of Hydrogen Gas in Plants under Abiotic Stress: Current Knowledge and Perspectives

Hydrogen gas (H₂) is a unique molecular messenger, which is known to be involved in diverse physiological processes in plants, from seed germination to seedling growth to regulation of environmental stresses. In this review, we focus on the role of H₂ in plant responses to abiotic stresses, such as temperature, osmotic stress, light, paraquat (PQ)-induced oxidative stresses, and metal stresses. In general, H₂ can alleviate environmental stresses by improving the antioxidant defense system, photosynthetic capacity, re-establishing ion homeostasis and glutathione homeostasis, maintaining nutrient element homeostasis, mediating glucose metabolism and flavonoid pathways, regulating heme oxygenase-1 (HO-1) signaling, and interaction between H₂ and nitric oxide (NO), carbonic oxide (CO), or plant hormones. In addition, some genes modulated by H₂ under abiotic stresses are also discussed. Detailed evidence of molecular mechanisms for H₂-mediated particular pathways under abiotic stress, however, is scarce. Further studies regarding the regulatory roles of H₂ in modulating abiotic stresses research should focus on the molecular details of the particular pathways that are activated in plants. More research work will improve knowledge concerning possible applications of hydrogen-rich water (HRW) to respond to abiotic stresses with the aim of enhancing crop quality and economic value.

Research progress of additives in photobiological hydrogen production system to enhance biohydrogen

Photosynthetic biohydrogen has the advantages of extensive raw materials, clean and renewable, etc. But, its low substrate utilization rate limit its commercial application. It is reported that the use of additives in the process of biohydrogen by photofermentation is beneficial to increase biohydrogen. However, in practical application, the mechanism of additives in hydrogen production is not understood. This paper, the promotion effect of some additives on biohydrogen by photofermentation was reviewed. Whatever, the existing problems and development trends of various additives are also discussed. It is necessary to select appropriate additives according to the hydrogen-producing characteristics. The use of composite additives may further enhance biohydrogen, but the specific situation needs further exploration. The research results of this paper can help readers to further understand the role of additives in the crouse of photofermentative biohydrogen, provide reference for the research of photofermentative biohydrogen.

In Silico Identification and Characterization of a Hypothetical Protein From Rhodobacter capsulatus Revealing S-Adenosylmethionine-Dependent Methyltransferase Activity

Rhodobacter capsulatus is a purple non-sulfur bacteria widely used as a model organism to study bacterial photosynthesis. It exhibits extensive metabolic activities and demonstrates other distinctive characteristics such as pleomorphism and nitrogen-fixing capability. It can act as a gene transfer agent (GTA). The commercial importance relies on producing polyester polyhydroxyalkanoate (PHA), extracellular nucleic acids, and commercially critical single-cell proteins. These diverse features make the organism an exciting and environmentally and industrially important one to study. This study was aimed to characterize, model, and annotate the function of a hypothetical protein (Accession no. CAA71016.1) of R capsulatus through computational analysis. The urf7 gene encodes the protein. The tertiary structure was predicted through MODELLER and energy minimization and refinement by YASARA Energy Minimization Server and GalaxyRefine tools. Analysis of sequence similarity, evolutionary relationship, and exploration of domain, family, and superfamily inferred that the protein has S-adenosylmethionine (SAM)-dependent methyltransferase activity. This was further verified by active site prediction by CASTp server and molecular docking analysis through Autodock Vina tool and PatchDock server of the predicted tertiary structure of the protein with its ligands (SAM and SAH). Normally, as a part of the gene product of photosynthetic gene cluster (PGC), the established roles of SAM-dependent methyltransferases are bacteriochlorophyll and carotenoid biosynthesis. But the STRING database unveiled its association with NADH-ubiquinone oxidoreductase (Complex I). The assembly and regulation of this Complex I is mediated by the gene products of the nuo operon. As a part of this operon, the urf7 gene encodes SAM-dependent methyltransferase. As a consequence of these findings, it is reasonable to propose that the hypothetical protein of interest in this study is a SAM-dependent methyltransferase associated with bacterial NADH-ubiquinone oxidoreductase assembly. Due to conservation of Complex I from prokaryotes to eukaryotes, R capsulatus can be a model organism of study to understand the common disorders which are linked to the dysfunctions of complex I.

Hyaluronic Acid Allows Enzyme Immobilization for Applications in Biomedicine

Enzymes are proteins that control the efficiency and effectiveness of biological reactions and systems, as well as of engineered biomimetic processes. This review highlights current applications of a diverse range of enzymes for biofuel production, plastics, and chemical waste management, as well as for detergent, textile, and food production and preservation industries respectively. Challenges regarding the transposition of enzymes from their natural purpose and environment into synthetic practice are discussed. For example, temperature and pH-induced enzyme fragilities, short shelf life, low-cost efficiency, poor user-controllability, and subsequently insufficient catalytic activity were shown to decrease pertinence and profitability in large-scale production considerations. Enzyme immobilization was shown to improve and expand upon enzyme usage within a profit and impact-oriented commercial world and through enzyme-material and interfaces integration. With particular focus on the growing biomedical market, examples of enzyme immobilization within or onto hyaluronic acid (HA)-based complexes are discussed as a definable way to improve upon and/or make possible the next generation of medical undertakings. As a polysaccharide formed in every living organism, HA has proven beneficial in biomedicine for its high biocompatibility and controllable biodegradability, viscoelasticity, and hydrophilicity. Complexes developed with this molecule have been utilized to selectively deliver drugs to a desired location and at a desired rate, improve the efficiency of tissue regeneration, and serve as a viable platform for biologically accepted sensors. In similar realms of enzyme immobilization, HA’s ease in crosslinking allows the molecule to user-controllably enhance the design of a given platform in terms of both chemical and physical characteristics to thus best support successful and sustained enzyme usage. Such examples do not only demonstrate the potential of enzyme-based applications but further, emphasize future market trends and accountability.

Microalgal Hydrogen Production in Relation to Other Biomass-Based Technologies—A Review

Hydrogen is an environmentally friendly biofuel which, if widely used, could reduce atmospheric carbon dioxide emissions. The main barrier to the widespread use of hydrogen for power generation is the lack of technologically feasible and—more importantly—cost-effective methods of production and storage. So far, hydrogen has been produced using thermochemical methods (such as gasification, pyrolysis or water electrolysis) and biological methods (most of which involve anaerobic digestion and photofermentation), with conventional fuels, waste or dedicated crop biomass used as a feedstock. Microalgae possess very high photosynthetic efficiency, can rapidly build biomass, and possess other beneficial properties, which is why they are considered to be one of the strongest contenders among biohydrogen production technologies. This review gives an account of present knowledge on microalgal hydrogen production and compares it with the other available biofuel production technologies.

Developing microbial communities containing a high abundance of exoelectrogenic microorganisms using activated carbon granules

Microorganisms that can transfer electrons outside their cells are useful in a range of wastewater treatment and remediation technologies. Conventional methods of enriching exoelectrogens are cost-prohibitive (e.g., controlled-potential electrodes) or lack specificity (e.g., soluble electron acceptors). In this study a low-cost and simple approach to enrich exoelectrogens from a mixed microbial inoculum was investigated. After the method was validated using the exoelectrogen Geobacter sulfurreducens, microorganisms from a pilot-scale biological activated carbon (BAC) filter were subjected to incubations in which acetate was provided as the electron donor and granular activated carbon (GAC) as the electron acceptor. The BAC-derived community oxidized acetate and reduced GAC at a capacity of 1.0 mmol e^- (g GAC)^-1. After three transfers to new bottles, acetate oxidation rates increased 4.3-fold, and microbial morphologies and GAC surface coverage became homogenous. Although present at <0.01% in the inoculum, Geobacter species were significantly enriched in the incubations (up to 96% abundance), suggesting they were responsible for reducing the GAC. The ability to quickly and effectively develop an exoelectrogenic microbial community using GAC may help initiate and/or maintain environmental systems that benefit from the unique metabolic capabilities of these microorganisms.

Hydrogen Dark Fermentation for Degradation of Solid and Liquid Food Waste

The constant increase in the amount of food waste accumulating in landfills and discharged into the water reservoirs causes environment pollution and threatens human health. Solid and liquid food wastes include fruit, vegetable, and meat residues, alcohol bard, and sewage from various food enterprises. These products contain high concentrations of biodegradable organic compounds and represent an inexpensive and renewable substrate for the hydrogen fermentation. The goal of the work was to study the efficiency of hydrogen obtaining and decomposition of solid and liquid food waste via fermentation by granular microbial preparation (GMP). The application of GMP improved the efficiency of the dark fermentation of food waste. Hydrogen yields reached 102 L/kg of solid waste and 2.3 L/L of liquid waste. The fermentation resulted in the 91-fold reduction in the weight of the solid waste, while the concentration of organics in the liquid waste decreased 3-fold. Our results demonstrated the potential of granular microbial preparations in the production of hydrogen via dark fermentation. Further development of this technology may help to clean up the environment and reduce the reliance on fossil fuels by generating green hydrogen via recycling of household and industrial organic wastes.

Biohydrogen production from microalgae-Major bottlenecks and future research perspectives

The imprudent use of fossil fuels has resulted in high greenhouse gas (GHG) emissions, leading to climate change and global warming. Reduction in GHG emissions and energy insecurity imposed by the depleting fossil fuel reserves led to the search for alternative sustainable fuels. Hydrogen is a potential alternative energy carrier and is of particular interest because hydrogen combustion releases only water. Hydrogen is also an important industrial feedstock. As an alternative energy carrier, hydrogen can be used in fuel cells for power generation. Current hydrogen production mainly relies on fossil fuels and is usually energy and CO₂ -emission intensive, thus the use of fossil fuel-derived hydrogen as a carbon-free fuel source is fallacious. Biohydrogen production can be achieved via microbial methods, and the use of microalgae for hydrogen production is outstanding due to the carbon mitigating effects and the utilization of solar energy as an energy source by microalgae. This review provides comprehensive information on the mechanisms of hydrogen production by microalgae and the enzymes involved. The major challenges in the commercialization of microalgae-based photobiological hydrogen production are critically analyzed and future research perspectives are discussed. Life cycle analysis and economic assessment of hydrogen production by microalgae are also presented.

Advanced microalgae-based renewable biohydrogen production systems: A review

The reliance of fossil fuel for industrial and energy sectors has resulted in its depletion. Therefore, enormous efforts have been considered to move-out from fossil fuels to renewable energy sources based industrial process developments. Recently, biohydrogen (bio-H₂) has been recognised as a clean source of fuel with high-energy efficiency, which can be produced via different routes. Among them, biological fermentation processes are highly recommended due to eco-friendly and economically viable approaches compared to that of thermochemical processes. However, the low H₂ yield and high production cost are major bottlenecks for commercial scale operations. Thus, this review proposed an integrated microalgae-based H₂ production process, which will provides a possible route for commercialization in near future. Furthermore, process integration to improve efficiency and implementation of advanced strategies for the enhancement of bio-H₂ production, economic viability, and future research needs are discussed.

High-rate mesophilic hydrogen production from food waste using hybrid immobilized microbiome

This study examined the feasibility of dark fermentative biohydrogen production from food waste using hybrid immobilization in mesophilic condition. Among four different organic loading rates (OLRs), the highest average hydrogen production rate (HPR) of 9.82 ± 0.30 L/L-d was found at an OLR of 74.7 g hexose/L-d, which was higher than reported values from particulate feedstock in mesophilic condition. The average hydrogen yield (HY) at the condition was 1.25 ± 0.04 mol H₂/mol hexose_consumed. Whereas the average HPR and HY at an OLR 80 g hexose/L-d were 5.82 ± 0.12 L/L-d and 0.64 ± 0.02 mol H₂/mol hexose_consumed, respectively. Metabolic flux analysis showed the low HY was concurrent with the highest propionic acid and homoacetogenis. Bacterial population was shift from Clostridium sp. to non-hydrogen producers including Bifidobacterium, Bacteriodes, Olsenella, Dysgonomonas, and Dialister sp.

Molecular mechanism of ethanol-H2 co-production fermentation in anaerobic acidogenesis: Challenges and perspectives

Ethanol-type fermentation (ETF) is one of three fermentation types during the acidogenesis of the anaerobic biological treatment. Ethanoligenens, a representative genus of ETF, displays acidophilic, autoaggregative, and ethanol-H₂ co-producing characteristics and facilitates subsequent methanogenesis. Here, the latest advances in the molecular mechanisms of the metabolic regulation of ethanol-H₂ co-producing bacteria based on multi-omics studies were comprehensively reviewed. Comparative genomics demonstrated a low genetic similarity between Ethanoligenens and other hydrogen-producing genera. FeFe‑hydrogenases (FeFe-H₂ases) and pyruvate ferredoxin oxidoreductase (PFOR) played critical roles in the ethanol-H₂ co-metabolic pathway of Ethanoligenens. Global transcriptome analysis revealed that highly expressed [FeFe]-H₂ases and ferredoxins drove hydrogen production by Ethanoligenens at low pH conditions (4.0-4.5). Quantitative proteomic analysis also proved that this genus resists acetic acid-induced intracellular acidification through the up-regulated expression of pyrimidine metabolism related proteins. The autoaggregation of Ethanoligenen facilitated its granulation with acetate-oxidizing bacteria in co-culture systems and mitigated a fast pH drop, providing a new approach for solving a pH imbalance and improving hydrogen production. In-depth studies of the regulatory mechanism underlying ethanol-H₂ co-production metabolism and the syntrophic interactions of ethanol-H₂ co-producing Ethanoligenens with other microorganisms will provide insights into the improvement of bioenergy recovery in anaerobic biotechnology. The coupling of ETF with other biotechnologies, which based on the regulation of electron flow direction, syntrophic interaction, and metabolic flux, can be potential strategies to enhance the cascade recovery of energy and resources.

Microalgae Cultivation Technologies as an Opportunity for Bioenergetic System Development—Advantages and Limitations

Microalgal biomass is currently considered as a sustainable and renewable feedstock for biofuel production (biohydrogen, biomethane, biodiesel) characterized by lower emissions of hazardous air pollutants than fossil fuels. Photobioreactors for microalgae growth can be exploited using many industrial and domestic wastes. It allows locating the commercial microalgal systems in areas that cannot be employed for agricultural purposes, i.e., near heating or wastewater treatment plants and other industrial facilities producing carbon dioxide and organic and nutrient compounds. Despite their high potential, the large-scale algal biomass production technologies are not popular because the systems for biomass production, separation, drainage, and conversion into energy carriers are difficult to explicitly assess and balance, considering the ecological and economical concerns. Most of the studies presented in the literature have been carried out on a small, laboratory scale. This significantly limits the possibility of obtaining reliable data for a comprehensive assessment of the efficiency of such solutions. Therefore, there is a need to verify the results in pilot-scale and the full technical-scale studies. This study summarizes the strengths and weaknesses of microalgal biomass production technologies for bioenergetic applications.

DynaMut2: Assessing changes in stability and flexibility upon single and multiple point missense mutations

Predicting the effect of missense variations on protein stability and dynamics is important for understanding their role in diseases, and the link between protein structure and function. Approaches to estimate these changes have been proposed, but most only consider single‐point missense variants and a static state of the protein, with those that incorporate dynamics are computationally expensive. Here we present DynaMut2, a web server that combines Normal Mode Analysis (NMA) methods to capture protein motion and our graph‐based signatures to represent the wildtype environment to investigate the effects of single and multiple point mutations on protein stability and dynamics. DynaMut2 was able to accurately predict the effects of missense mutations on protein stability, achieving Pearson's correlation of up to 0.72 (RMSE: 1.02 kcal/mol) on a single point and 0.64 (RMSE: 1.80 kcal/mol) on multiple‐point missense mutations across 10‐fold cross‐validation and independent blind tests. For single‐point mutations, DynaMut2 achieved comparable performance with other methods when predicting variations in Gibbs Free Energy (ΔΔG) and in melting temperature (ΔT_m). We anticipate our tool to be a valuable suite for the study of protein flexibility analysis and the study of the role of variants in disease. DynaMut2 is freely available as a web server and API at http://biosig.unimelb.edu.au/dynamut2.

NO is involved in H2-induced adventitious rooting in cucumber by regulating the expression and interaction of plasma membrane H+-ATPase and 14-3-3

NO was involved in H₂-induced adventitious rooting by regulating the protein and gene expressions of PM H⁺-ATPase and 14-3-3. Simultaneously, the interaction of PM H⁺-ATPase and 14-3-3 protein was also involved in this process. Hydrogen gas (H₂) and nitric oxide (NO) have been shown to be involved in plant growth and development. The results in this study revealed that NO was involved in H₂-induced adventitious root formation. Western blot (WB) analysis showed that the protein abundances of plasma membrane H⁺-ATPase (PM H⁺-ATPase) and 14-3-3 protein were increased after H₂, NO, H₂ plus NO treatments, whereas their protein abundances were down regulated when NO scavenger carboxy-2-(4-carboxyphenyl)-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide (cPTI O) was added. Moreover, the mRNA abundances of the HA3 and 14-3-3(7) gene as well as the activities of PM H⁺-ATPase (EC 3.6.1.35) and H⁺ pump were in full agreement with the changes of protein abundance. Phosphorylation of PM H⁺-ATPase and the interaction of PM H⁺-ATPase and 14-3-3 protein were detected by co-immunoprecipitation analysis. H₂ and NO significantly up regulated the phosphorylation of PM H⁺-ATPase and the interaction of PM H⁺-ATPase and 14-3-3 protein. Conversely, the stimulation of PM H⁺-ATPase phosphorylation and protein interaction were significantly diminished by cPTIO. Protein interaction activator fusicoccin (FC) and inhibitor adenosine monophosphate (AMP) of PM H⁺-ATPase and 14-3-3 were used in this study, and the results showed that FC significantly increased the abundances of PM H⁺-ATPase and 14-3-3, while AMP showed opposite trends. We further proved the critical roles of PM H⁺-ATPase and 14-3-3 protein interaction in NO-H₂-induced adventitious root formation. Taken together, our results suggested that NO might be involved in H₂-induced adventitious rooting by regulating the expression and the interaction of PM H⁺-ATPase and 14-3-3 protein.

From Homogeneous to Heterogenized Molecular Catalysts for H2 Production by Formic Acid Dehydrogenation: Mechanistic Aspects, Role of Additives, and Co-Catalysts

H2 production via dehydrogenation of formic acid (HCOOH, FA), sodium formate (HCOONa, SF), or their mixtures, at near-ambient conditions, T < 100 °C, P = 1 bar, is intensively pursued, in the context of the most economically and environmentally eligible technologies. Herein we discuss molecular catalysts (ML), consisting of a metal center (M, e.g., Ru, Ir, Fe, Co) and an appropriate ligand (L), which exemplify highly efficient Turnover Numbers (TONs) and Turnover Frequencies (TOFs) in H2 production from FA/SF. Typically, many of these ML catalysts require the presence of a cofactor that promotes their optimal cycling. Thus, we distinguish the concept of such cofactors in additives vs. co-catalysts: When used at high concentrations, that is stoichiometric amounts vs. the substrate (HCOONa, SF), the cofactors are sacrificial additives. In contrast, co-catalysts are used at much lower concentrations, that is at stoichiometric amount vs. the catalyst. The first part of the present review article discusses the mechanistic key steps and key controversies in the literature, taking into account theoretical modeling data. Then, in the second part, the role of additives and co-catalysts as well as the role of the solvent and the eventual inhibitory role of H2O are discussed in connection to the main mechanistic steps. For completeness, photons used as activators of ML catalysts are also discussed in the context of co-catalysts. In the third part, we discuss examples of promising hybrid nanocatalysts, consisting of a molecular catalyst ML attached on the surface of a nanoparticle. In the same context, we discuss nanoparticulate co-catalysts and hybrid co-catalysts, consisting of catalyst attached on the surface of a nanoparticle, and their role in the performance of molecular catalysts ML.

Enzymatic self-sufficient hydride transfer processes

A number of self-sufficient hydride transfer processes have been reported in biocatalysis, with a common feature being the dependence on nicotinamide as a cofactor. This cofactor is provided in catalytic amounts and serves as a hydride shuttle to connect two or more enzymatic redox events, usually ensuring overall redox neutrality. Creative systems were designed to produce synthetic sequences characterized by high hydride economy, typically going in hand with excellent atom economy. Several redox enzymes have been successfully combined in one-pot one-step to allow functionalization of a large variety of molecules while preventing by-product formation. This review analyzes and classifies the various strategies, with a strong focus on efficiency, which is evaluated here in terms of the hydride economy and measured by the turnover number of the nicotinamide cofactor(s). The review ends with a critical evaluation of the reported systems and highlights areas where further improvements might be desirable.

Homologous overexpression of hydrogenase and glycerol dehydrogenase in Clostridium pasteurianum to enhance hydrogen production from crude glycerol

This study reports engineering of a hypertransformable variant of C. pasteurianum for bioconversion of glycerol into hydrogen (H₂). A functional glycerol-triggered hydrogen pathway was engineered based on two approaches: (1) increasing product yield by overexpression of immediate enzyme catalyzing H₂ production, (2) increasing substrate uptake by overexpression of enzymes involved in glycerol utilization. The first strategy aimed at overexpression of hydA gene encoding hydrogenase, and the second one, through combination of overexpression of dhaD1 and dhaK genes encoding glycerol dehydrogenase and dihydroxyacetone kinase. These genetic manipulations resulted in two recombinant strains (hydA⁺⁺/dhaD1K⁺⁺) capable of producing 97% H₂ (v/v), with yields of 1.1 mol H₂/mol glycerol in hydA overexpressed strain, and 0.93 mol H₂/mol glycerol in dhaD1K overexpressed strain, which was 1.5 fold higher than wild type. Among two strains, dhaD1K⁺⁺ consumed more glycerol than hydA⁺⁺ which proves that overexpression of glycerol enzymes has enhanced glycerol intake rate.

Roles of hydrogen gas in plants: a review

Hydrogen gas (H2) was first identified as a unique molecular messenger in animals. Since H2 was reported as a novel antioxidant, it has been proven effective in treating many diseases. However, the studies concerning H2 in plants are just beginning to emerge. Here, two paths of H2 production in plants have been reported, namely, hydrogenase and nitrogenase. H2 has positive effects on seed germination, seedling growth, adventitious rooting, root elongation, harvest freshness, stomatal closure and anthocyanin synthesis. H2 also can enhance plant symbiotic stress resistance commonly through the enhancement of antioxidant defence system. Moreover, H2 shows cross talk with nitric oxide, carbon monoxide and other signalling molecules (for example, abscisic acid, ethylene and jasmonate acid). H2 can regulate the expression of responsive genes under abiotic stress and during adventitious roots formation and anthocyanin biosynthesis. Future work will need to focus on the molecular mechanism of H2 and its crosstalk with other signalling molecules in plants. With its promising application in agriculture, hydrogen agriculture will be welcomed in the near future.

Structural Mimics of the [Fe]-Hydrogenase: A Complete Set for Group VIII Metals

A set of structural mimics of the [Fe]-hydrogenase active site comprising all the group VIII metals, viz., [M(2-NHC(O)C₅H₄N)(CO)₂(2-S-C₅H₄N)], has been synthesized. They exist as a mixture of isomers in solution, and the relative stability of the isomers depends on the nature of the metal and the substituent at the 6-position of the pyridine ligand.

Biohydrogen production from food waste: Current status, limitations, and future perspectives

Among the various biological routes for H₂ production, dark fermentation is considered the most practically applicable owing to its capability to degrade organic wastes and high H₂ production rate. Food waste (FW) has high carbohydrate content and easily hydrolysable in nature, exhibiting higher H₂ production potential than that of other organic wastes. In this review article, first, the current status of H₂ production from FW by dark fermentation and the strategies applied for enhanced performance are briefly summarized. Then, the technical and economic limitations of dark fermentation of FW are thoroughly discussed. Economic assessment revealed that the economic feasibility of H₂ production from FW by dark fermentation is questionable. Current efforts to further increase H₂ yield and waste removal efficiency are also introduced. Finally, future perspectives along with possible routes converting dark fermentation effluent to valuable fuels and chemicals are discussed.

Wastewater: A Potential Bioenergy Resource

Wastewaters are a rich source of nutrients for microorganisms. However, if left unattended the biodegradation may lead to severe environmental hazards. The wastewaters can thus be utilized for the production of various value added products including bioenergy (H₂ and CH₄). A number of studies have reported utilization of various wastewaters for energy production. Depending on the nature of the wastewater, different reactor configurations, wastewater and inoculum pretreatments, co-substrate utilizations along with other process parameters have been studied for efficient product formation. Only a few studies have reported sequential utilization of wastewaters for H₂ and CH₄ production despite its huge potential for complete waste degradation.

Improvement of hydrogen production from glucose by ferrous iron and biochar

Effects of biochar (BC) and ferrous iron (Fe²⁺) additions on hydrogen (H₂) production from glucose were investigated using batch experiment. The glucose with both BC and Fe²⁺ additions were incubated at 37°C for H₂ production. As compared with the control group (without BC and Fe²⁺ additions), the synergic effects of BC and Fe²⁺ make the lag phase time decease from 4.25 to 2.12h, and H₂ yield increase from 158.0 to 234.4ml/g glucose. Moreover, suitable concentrations of BC and Fe²⁺ serve to enhance volatile fatty acid generation during H₂ evolution. These results indicate that H₂ production is improved by BC and Fe²⁺ regulations, where synergic mechanisms are described as follows: BC acts as support carriers of anaerobes and system pH buffers, which promotes the biofilm formation and maintains suitable pH environment; Appropriate Fe²⁺ concentration can improve hydrogenase activity in H₂ production.

Resourceful treatment of alcohol distillery wastewater by pulsed discharge

Resourceful treatment of alcohol distillery wastewater by pulsed discharge in liquid (PDL) was first studied in this work. The biodegradability of alcohol wastewater can be effectively improved and chemical oxygen demand (COD) removal attained over 40% within 15min PDL treatment. Hydrogen produced from the treating processes was emphatically analyzed. The flow rate, and yield of hydrogen achieved were 80mL/min, 146mL/g COD removed within 30min respectively, which were much better than existing technologies. Meanwhile, the mechanism of hydrogen production from alcohol distillery wastewater by PDL was presented in this work indicating that different region in reactor has different mechanism. In discharge channel, high-energy electrons and resultant free radicals played a leading role. Far away from discharge channel, the neutral particles with strong oxidizing were more important. This work can be a good guidance for both treatment of refractory wastewater and mechanism of hydrogen production by plasma reforming.

Microalgal hydrogen production - A review

Bio-hydrogen from microalgae including cyanobacteria has attracted commercial awareness due to its potential as an alternative, reliable and renewable energy source. Photosynthetic hydrogen production from microalgae can be interesting and promising options for clean energy. Advances in hydrogen-fuel-cell technology may attest an eco-friendly way of biofuel production, since, the use of H₂ to generate electricity releases only water as a by-product. Progress in genetic/metabolic engineering may significantly enhance the photobiological hydrogen production from microalgae. Manipulation of competing metabolic pathways by modulating the certain key enzymes such as hydrogenase and nitrogenase may enhance the evolution of H₂ from photoautotrophic cells. Moreover, biological H₂ production at low operating costs is requisite for economic viability. Several photobioreactors have been developed for large-scale biomass and hydrogen production. This review highlights the recent technological progress, enzymes involved and genetic as well as metabolic engineering approaches towards sustainable hydrogen production from microalgae.

Nanoparticles in Biological Hydrogen Production: An Overview

Biological hydrogen (H₂) production enhancement through the use of nanoparticles (NPs) supplement in the media is being recognized as a promising approach. The NPs, including those of metal and metal oxides have shown a significant improvement in the BHP. A number of organisms as pure or mixed cultures can produce H₂ in presence of NPs from pure sugars and biowaste as a feed. However, their H₂ production efficiencies have been found to vary significantly with the type of NPs and their concentration. In this review article, the potential role of NPs in the enhancement of H₂ production has been assessed in dark- and photo-fermentative organisms using sugars and biowaste materials as feed. Further, the integrative approaches for commercial applications of NPs in BHP have been discussed.

Recent insights into biohydrogen production by microalgae - From biophotolysis to dark fermentation

One of the best options to alleviate the problems associated with global warming and climate change is to reduce burning of fossil fuels and search for new alternative energy resources. In case of biodiesel and bioethanol production, the choice of feedstock and the process design influences the GHG emissions and appropriate methods need to be adapted. Hydrogen is a zero-carbon and energy dense alternative energy carrier with clean burning properties and biohydrogen production by microalgae can reduce production associated GHG emissions to a great extent. Biohydrogen can be produced through dark fermentation using sugars, starch, or cellulosic materials. Microalgae-based biohydrogen production is recently regarded as a promising pathway for biohydrogen production via photolysis or being a substrate for anaerobic fermentation. This review lists the methods of hydrogen production by microalgae. The enzymes involved and the factors affecting the biohydrogen production process are discussed. The bottlenecks in microalgae-based biohydrogen production are critically reviewed and future research areas in hydrogen production are presented.