1
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Ueberham L, Schädlich J, Schramke K, Braun S, Selg C, Laube M, Lönnecke P, Pietzsch J, Hey-Hawkins E. Carborane-Based Analogs of Celecoxib and Flurbiprofen, their COX Inhibition Potential, and COX Selectivity Index. ChemMedChem 2025:e2500166. [PMID: 40128115 DOI: 10.1002/cmdc.202500166] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2025] [Revised: 03/22/2025] [Accepted: 03/24/2025] [Indexed: 03/26/2025]
Abstract
The cylcooxygenase isoforms COX-1 and COX-2 are involved in the production of prostaglandins in physiological and pathological processes. The overexpression of COX-2 under inflammatory conditions, its role in cancer and neurodegenerative diseases necessitates the need to develop and improve nonsteroidal anti-inflammatory drugs. These mainly unselective COX inhibitors, e.g. aspirin, are used to reduce the symptoms of inflammation. To reduce unwanted side effects connected with unselective inhibition, the development of novel COX-2 selective inhibitors is a major goal. Herein, the synthesis, characterization and in vitro biological evaluation of eight flurbiprofen- and celecoxib-based carborane analogs are described. Carboranes as hydrophobic surrogates are suitable substituents that can contribute to a selectivity increase toward COX-2 due to size exclusion. The inhibitory efficacy for COX-1 and COX-2 of the four ortho- and four nido-carborane derivatives has been tested. The nido compounds are much more potent than their closo-carborane analogs. The celecoxib-based nido-carborane compound 10 shows an IC50(COX-2) value in the sub-μM range and slight selectivity for COX-2. This is in contrast to its ortho-carborane counterpart 9, which shows an inhibition preference for COX-1. While none of these carborane derivatives outperforms their organic analogs, the flurbiprofen-based nido-carborane derivatives 14a and 14b surpass the known carborane-based flurbiprofen analogs.
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Affiliation(s)
- Lea Ueberham
- Centre for Biotechnology and Biomedicine (BBZ), Faculty of Chemistry and Mineralogy, Institute of Bioanalytical Chemistry, Universität Leipzig, Deutscher Platz 5, 04103, Leipzig, Germany
| | - Jonas Schädlich
- Department of Radiopharmaceutical and Chemical Biology, Institute of Radiopharmaceutical Cancer Research, Helmholtz-Zentrum Dresden-Rossendorf (HZDR), Bautzner Landstraße 400, 01328, Dresden, Germany
- School of Science, Faculty of Chemistry and Food Chemistry, Technische Universität Dresden, Mommsenstraße 4, 01062, Dresden, Germany
| | - Kim Schramke
- Centre for Biotechnology and Biomedicine (BBZ), Faculty of Chemistry and Mineralogy, Institute of Bioanalytical Chemistry, Universität Leipzig, Deutscher Platz 5, 04103, Leipzig, Germany
| | - Sebastian Braun
- Centre for Biotechnology and Biomedicine (BBZ), Faculty of Chemistry and Mineralogy, Institute of Bioanalytical Chemistry, Universität Leipzig, Deutscher Platz 5, 04103, Leipzig, Germany
| | - Christoph Selg
- Centre for Biotechnology and Biomedicine (BBZ), Faculty of Chemistry and Mineralogy, Institute of Bioanalytical Chemistry, Universität Leipzig, Deutscher Platz 5, 04103, Leipzig, Germany
| | - Markus Laube
- Department of Radiopharmaceutical and Chemical Biology, Institute of Radiopharmaceutical Cancer Research, Helmholtz-Zentrum Dresden-Rossendorf (HZDR), Bautzner Landstraße 400, 01328, Dresden, Germany
| | - Peter Lönnecke
- Centre for Biotechnology and Biomedicine (BBZ), Faculty of Chemistry and Mineralogy, Institute of Bioanalytical Chemistry, Universität Leipzig, Deutscher Platz 5, 04103, Leipzig, Germany
| | - Jens Pietzsch
- Department of Radiopharmaceutical and Chemical Biology, Institute of Radiopharmaceutical Cancer Research, Helmholtz-Zentrum Dresden-Rossendorf (HZDR), Bautzner Landstraße 400, 01328, Dresden, Germany
- School of Science, Faculty of Chemistry and Food Chemistry, Technische Universität Dresden, Mommsenstraße 4, 01062, Dresden, Germany
| | - Evamarie Hey-Hawkins
- Centre for Biotechnology and Biomedicine (BBZ), Faculty of Chemistry and Mineralogy, Institute of Bioanalytical Chemistry, Universität Leipzig, Deutscher Platz 5, 04103, Leipzig, Germany
- Faculty of Chemistry and Chemical Engineering Department of Chemistry, Babeş-Bolyai University, Str. Arany Janos Nr. 11, RO-400028, Cluj-Napoca, Romania
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2
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Ueberham L, Gündel D, Kellert M, Deuther-Conrad W, Ludwig FA, Lönnecke P, Kazimir A, Kopka K, Brust P, Moldovan RP, Hey-Hawkins E. Development of the High-Affinity Carborane-Based Cannabinoid Receptor Type 2 PET Ligand [ 18F]LUZ5- d8. J Med Chem 2023; 66:5242-5260. [PMID: 36944112 PMCID: PMC10782483 DOI: 10.1021/acs.jmedchem.3c00195] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2023] [Indexed: 03/23/2023]
Abstract
The development of cannabinoid receptor type 2 (CB2R) radioligands for positron emission tomography (PET) imaging was intensively explored. To overcome the low metabolic stability and simultaneously increase the binding affinity of known CB2R radioligands, a carborane moiety was used as a bioisostere. Here we report the synthesis and characterization of carborane-based 1,8-naphthyridinones and thiazoles as novel CB2R ligands. All tested compounds showed low nanomolar CB2R affinity, with (Z)-N-[3-(4-fluorobutyl)-4,5-dimethylthiazole-2(3H)-ylidene]-(1,7-dicarba-closo-dodecaboranyl)-carboxamide (LUZ5) exhibiting the highest affinity (0.8 nM). Compound [18F]LUZ5-d8 was obtained with an automated radiosynthesizer in high radiochemical yield and purity. In vivo evaluation revealed the improved metabolic stability of [18F]LUZ5-d8 compared to that of [18F]JHU94620. PET experiments in rats revealed high uptake in spleen and low uptake in brain. Thus, the introduction of a carborane moiety is an appropriate tool for modifying literature-known CB2R ligands and gaining access to a new class of high-affinity CB2R ligands, while the in vivo pharmacology still needs to be addressed.
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Affiliation(s)
- Lea Ueberham
- Universität
Leipzig, Faculty of Chemistry
and Mineralogy, Institute of Inorganic Chemistry, Johannisallee 29, 04103 Leipzig, Germany
| | - Daniel Gündel
- Helmholtz-Zentrum
Dresden-Rossendorf (HZDR), Institute of Radiopharmaceutical Cancer Research, Department of Neuroradiopharmaceuticals,
Research Site Leipzig, 04318 Leipzig, Germany
| | - Martin Kellert
- Universität
Leipzig, Faculty of Chemistry
and Mineralogy, Institute of Inorganic Chemistry, Johannisallee 29, 04103 Leipzig, Germany
| | - Winnie Deuther-Conrad
- Helmholtz-Zentrum
Dresden-Rossendorf (HZDR), Institute of Radiopharmaceutical Cancer Research, Department of Neuroradiopharmaceuticals,
Research Site Leipzig, 04318 Leipzig, Germany
| | - Friedrich-Alexander Ludwig
- Helmholtz-Zentrum
Dresden-Rossendorf (HZDR), Institute of Radiopharmaceutical Cancer Research, Department of Neuroradiopharmaceuticals,
Research Site Leipzig, 04318 Leipzig, Germany
| | - Peter Lönnecke
- Universität
Leipzig, Faculty of Chemistry
and Mineralogy, Institute of Inorganic Chemistry, Johannisallee 29, 04103 Leipzig, Germany
| | - Aleksandr Kazimir
- Universität
Leipzig, Faculty of Chemistry
and Mineralogy, Institute of Inorganic Chemistry, Johannisallee 29, 04103 Leipzig, Germany
| | - Klaus Kopka
- Helmholtz-Zentrum
Dresden-Rossendorf (HZDR), Institute of Radiopharmaceutical Cancer Research, Department of Neuroradiopharmaceuticals,
Research Site Leipzig, 04318 Leipzig, Germany
- Faculty
of Chemistry and Food Chemistry, School of Science, TU Dresden, 01069 Dresden, Germany
| | - Peter Brust
- Helmholtz-Zentrum
Dresden-Rossendorf (HZDR), Institute of Radiopharmaceutical Cancer Research, Department of Neuroradiopharmaceuticals,
Research Site Leipzig, 04318 Leipzig, Germany
- The
Lübeck Institute of Experimental Dermatology, University Medical Center Schleswig-Holstein, 23562 Lübeck, Germany
| | - Rareş-Petru Moldovan
- Helmholtz-Zentrum
Dresden-Rossendorf (HZDR), Institute of Radiopharmaceutical Cancer Research, Department of Neuroradiopharmaceuticals,
Research Site Leipzig, 04318 Leipzig, Germany
| | - Evamarie Hey-Hawkins
- Universität
Leipzig, Faculty of Chemistry
and Mineralogy, Institute of Inorganic Chemistry, Johannisallee 29, 04103 Leipzig, Germany
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3
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Carboranes in drug discovery, chemical biology and molecular imaging. Nat Rev Chem 2022; 6:486-504. [PMID: 37117309 DOI: 10.1038/s41570-022-00400-x] [Citation(s) in RCA: 61] [Impact Index Per Article: 20.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/17/2022] [Indexed: 11/08/2022]
Abstract
There exists a paucity of structural innovation and limited molecular diversity associated with molecular frameworks in drug discovery and biomolecular imaging/chemical probe design. The discovery and exploitation of new molecular entities for medical and biological applications will necessarily involve voyaging into previously unexplored regions of chemical space. Boron clusters, notably the carboranes, offer an alternative to conventional (poly)cyclic organic frameworks that may address some of the limitations associated with the use of novel molecular frameworks in chemical biology or medicine. The high thermal stability, unique 3D structure and aromaticity, kinetic inertness to metabolism and ability to engage in unusual types of intermolecular interactions, such as dihydrogen bonds, with biological receptors make carboranes exquisite frameworks in the design of probes for chemical biology, novel drug candidates and biomolecular imaging agents. This Review highlights the key developments of carborane derivatives made over the last decade as new design tools in medicinal chemistry and chemical biology, showcasing the versatility of this unique family of boron compounds.
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4
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Duan Y, Zhou W, Shao H, Zhang Z, Shi W, Xu G. Electron beam induced degradation of indomethacin in aqueous solution: kinetics, degradation mechanism, and toxicity assessment. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:19283-19294. [PMID: 34716550 DOI: 10.1007/s11356-021-16348-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Accepted: 08/31/2021] [Indexed: 06/13/2023]
Abstract
Pharmaceutical compounds were emerging contaminants, and the accumulation of pharmaceutical compounds in the environment increased the risk to humans and ecosystems. In this study, electron beam irradiation was applied to degrade indomethacin (IDM) in aqueous solution. IDM degradation followed pseudo-first-order kinetics and 300 μM IDM could be completely degraded at only 2 kGy. According to the quenching experiment, the dose constant ratios of oxidative radicals (•OH) and reductive radicals (e-aq and •H) could be calculated as k•OH: ke aq and •H=4.79:1. As the concentration of H2O2 increased from 0 to 10 mM, the dose constant increased from 1.883 to 2.582 kGy-1. However, degradation effect would be restrained in the existence of NO-3, NO-2, CO2-3, HCO-3, SO2-, and humic acid due to their competition for the active species. Theoretical calculation revealed the radical attacking sites of IDM molecule and the most probable pathways were proposed with identification of intermediates. The attack of •OH mainly resulted in the cleavage of amide bond, indole ring opening, demethoxylation, and •OH addition. Dechlorination and the reduction of the carbonyl group occurred on IDM molecular through the reduction of e-aq and •H. The intermediates could continue to be degraded to small molecule acid, such as formic acid, acetic acid, and oxalic acid. Furthermore, highly toxic IDM transformed into less toxic products during the irradiation process.
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Affiliation(s)
- Yu Duan
- School of Environmental and Chemical Engineering, Shanghai University, 99 Shangda Road, Shanghai, 200444, China
| | - Wei Zhou
- Baowu Water Technology Co., Ltd., 550 Keshan Road, Shanghai, 201999, China
| | - Haiyang Shao
- School of Environmental and Chemical Engineering, Shanghai University, 99 Shangda Road, Shanghai, 200444, China
| | - Zhibo Zhang
- School of Environmental and Chemical Engineering, Shanghai University, 99 Shangda Road, Shanghai, 200444, China
| | - Wenyan Shi
- Key Laboratory of Organic Compound Pollution Control Engineering, Ministry of Education, Shanghai, 200444, PR China
| | - Gang Xu
- School of Environmental and Chemical Engineering, Shanghai University, 99 Shangda Road, Shanghai, 200444, China.
- Key Laboratory of Organic Compound Pollution Control Engineering, Ministry of Education, Shanghai, 200444, PR China.
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5
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Messner K, Vuong B, Tranmer GK. The Boron Advantage: The Evolution and Diversification of Boron’s Applications in Medicinal Chemistry. Pharmaceuticals (Basel) 2022; 15:ph15030264. [PMID: 35337063 PMCID: PMC8948683 DOI: 10.3390/ph15030264] [Citation(s) in RCA: 58] [Impact Index Per Article: 19.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2022] [Revised: 02/10/2022] [Accepted: 02/13/2022] [Indexed: 12/13/2022] Open
Abstract
In this review, the history of boron’s early use in drugs, and the history of the use of boron functional groups in medicinal chemistry applications are discussed. This includes diazaborines, boronic acids, benzoxaboroles, boron clusters, and carboranes. Furthermore, critical developments from these functional groups are highlighted along with recent developments, which exemplify potential prospects. Lastly, the application of boron in the form of a prodrug, softdrug, and as a nanocarrier are discussed to showcase boron’s emergence into new and exciting fields. Overall, we emphasize the evolution of organoboron therapeutic agents as privileged structures in medicinal chemistry and outline the impact that boron has had on drug discovery and development.
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Affiliation(s)
- Katia Messner
- Rady Faculty of Health Science, College of Pharmacy, University of Manitoba, Winnipeg, MB R3E 0T5, Canada; (K.M.); (B.V.)
| | - Billy Vuong
- Rady Faculty of Health Science, College of Pharmacy, University of Manitoba, Winnipeg, MB R3E 0T5, Canada; (K.M.); (B.V.)
| | - Geoffrey K. Tranmer
- Rady Faculty of Health Science, College of Pharmacy, University of Manitoba, Winnipeg, MB R3E 0T5, Canada; (K.M.); (B.V.)
- Department of Chemistry, Faculty of Science, University of Manitoba, Winnipeg, MB R3E 0T5, Canada
- Correspondence:
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6
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Kuhnert R, Kuhnert L, Sárosi M, George S, Draca D, Paskas S, Hofmann B, Steinhilber D, Honscha W, Mijatović S, Maksimović‐Ivanić D, Hey‐Hawkins E. Borcalein: a Carborane-Based Analogue of Baicalein with 12-Lipoxygenase-Independent Toxicity. ChemMedChem 2022; 17:e202100588. [PMID: 34694057 PMCID: PMC9298951 DOI: 10.1002/cmdc.202100588] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2021] [Revised: 10/23/2021] [Indexed: 11/11/2022]
Abstract
12-Lipoxygenase is crucial for tumour angiogenesis. 5,6,7-Trihydroxy-2-phenyl-4H-1-benzopyran-4-one (baicalein) is a suitable inhibitor for this enzyme but is rapidly metabolised in vivo. Thus, an improvement of the metabolic stability is necessary to enhance the therapeutic efficiency. An emerging approach to enhance metabolic stability of carbon-based pharmaceuticals is the use of metabolically stable, non-toxic boron clusters, such as dicarba-closo-dodecaborane(12)s (carboranes) as phenyl mimetics. Therefore, the unsubstituted phenyl ring of baicalein was replaced by meta-carborane, resulting in borcalein, the carborane analogue of baicalein. This substitution resulted in a decreased inhibitory activity toward 12-lipoxygenase, but led to increased toxicity in melanoma (A375, B16, B16F10) and colon cancer cell lines (SW480, HCT116, CT26CL25) with decreased tumour selectivity in comparison to baicalein. Surprisingly, borcalein displays a different mechanism of cytotoxicity with increased intracellular production of reactive oxygen species (ROS), reactive nitrogen species (RNS) and nitric oxide (NO).
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Affiliation(s)
- Robert Kuhnert
- Institute of Inorganic ChemistryFaculty of Chemistry and MineralogyLeipzig UniversityJohannisallee 2904103LeipzigGermany
| | - Lydia Kuhnert
- Institute of Pharmacology, Pharmacy and ToxicologyFaculty of Veterinary MedicineLeipzig UniversityAn den Tierkliniken 1504103LeipzigGermany
| | - Menyhárt‐B. Sárosi
- Institute of Inorganic ChemistryFaculty of Chemistry and MineralogyLeipzig UniversityJohannisallee 2904103LeipzigGermany
| | - Sven George
- Institute of Pharmaceutical ChemistryUniversity of FrankfurtMax-von-Laue-Straße 960438FrankfurtGermany
| | - Dijana Draca
- Department of ImmunologyInstitute for Biological Research “Sinisa Stankovic”University of BelgradeBul. despota Stefana 14211060BelgradeSerbia
| | - Svetlana Paskas
- Department of ImmunologyInstitute for Biological Research “Sinisa Stankovic”University of BelgradeBul. despota Stefana 14211060BelgradeSerbia
| | - Bettina Hofmann
- Institute of Pharmaceutical ChemistryUniversity of FrankfurtMax-von-Laue-Straße 960438FrankfurtGermany
| | - Dieter Steinhilber
- Institute of Pharmaceutical ChemistryUniversity of FrankfurtMax-von-Laue-Straße 960438FrankfurtGermany
| | - Walther Honscha
- Institute of Pharmacology, Pharmacy and ToxicologyFaculty of Veterinary MedicineLeipzig UniversityAn den Tierkliniken 1504103LeipzigGermany
| | - Sanja Mijatović
- Department of ImmunologyInstitute for Biological Research “Sinisa Stankovic”University of BelgradeBul. despota Stefana 14211060BelgradeSerbia
| | - Danijela Maksimović‐Ivanić
- Department of ImmunologyInstitute for Biological Research “Sinisa Stankovic”University of BelgradeBul. despota Stefana 14211060BelgradeSerbia
| | - Evamarie Hey‐Hawkins
- Institute of Inorganic ChemistryFaculty of Chemistry and MineralogyLeipzig UniversityJohannisallee 2904103LeipzigGermany
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7
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Abstract
In this contribution, we provide a comprehensive overview of acyclic twisted amides, covering the literature since 1993 (the year of the first recognized report on acyclic twisted amides) through June 2020. The review focuses on classes of acyclic twisted amides and their key structural properties, such as amide bond twist and nitrogen pyramidalization, which are primarily responsible for disrupting nN to π*C═O conjugation. Through discussing acyclic twisted amides in comparison with the classic bridged lactams and conformationally restricted cyclic fused amides, the reader is provided with an overview of amidic distortion that results in novel conformational features of acyclic amides that can be exploited in various fields of chemistry ranging from organic synthesis and polymers to biochemistry and structural chemistry and the current position of acyclic twisted amides in modern chemistry.
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Affiliation(s)
- Guangrong Meng
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Jin Zhang
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
- College of Chemistry and Chemical Engineering, Key Laboratory of Chemical Additives for China National Light Industry, Shaanxi University of Science and Technology, Xi'an 710021, China
| | - Michal Szostak
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
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8
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Abstract
"There's plenty of room at the bottom" (Richard Feynman, 1959): an invitation for (metalla)carboranes to enter the (new) field of nanomedicine. For two decades, the number of publications on boron cluster compounds designed for potential applications in medicine has been constantly increasing. Hundreds of compounds have been screened in vitro or in vivo for a variety of biological activities (chemotherapeutics, radiotherapeutics, antiviral, etc.), and some have shown rather promising potential for further development. However, until now, no boron cluster compounds have made it to the clinic, and even clinical trials have been very sparse. This review introduces a new perspective in the field of medicinal boron chemistry, namely that boron-based drugs should be regarded as nanomedicine platforms, due to their peculiar self-assembly behaviour in aqueous solutions, and treated as such. Examples for boron-based 12- and 11-vertex clusters and appropriate comparative studies from medicinal (in)organic chemistry and nanomedicine, highlighting similarities, differences and gaps in physicochemical and biological characterisation methods, are provided to encourage medicinal boron chemists to fill in the gaps between chemistry laboratory and real applications in living systems by employing bioanalytical and biophysical methods for characterising and controlling the aggregation behaviour of the clusters in solution.
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Affiliation(s)
- Marta Gozzi
- Institute of Inorganic ChemistryFaculty of Chemistry and MineralogyLeipzig UniversityJohannisallee 2904103LeipzigGermany
- Institute of Analytical ChemistryFaculty of Chemistry and MineralogyLeipzig UniversityLinnéstr. 304103LeipzigGermany
- Institute of Medicinal Physics and BiophysicsFaculty of MedicineLeipzig UniversityHärtelstr. 16–1804107LeipzigGermany
| | - Benedikt Schwarze
- Institute of Medicinal Physics and BiophysicsFaculty of MedicineLeipzig UniversityHärtelstr. 16–1804107LeipzigGermany
| | - Evamarie Hey‐Hawkins
- Institute of Inorganic ChemistryFaculty of Chemistry and MineralogyLeipzig UniversityJohannisallee 2904103LeipzigGermany
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9
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Asawa Y, Arsent’eva AV, Anufriev SA, Anisimov AA, Suponitsky KY, Filippov OA, Nakamura H, Sivaev IB. Synthesis of Bis(Carboranyl)amides 1,1'-μ-(CH 2NH(O)C(CH 2) n-1,2-C 2B 10H 11) 2 ( n = 0, 1) and Attempt of Synthesis of Gadolinium Bis(Dicarbollide). Molecules 2021; 26:1321. [PMID: 33801248 PMCID: PMC7958119 DOI: 10.3390/molecules26051321] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Revised: 02/23/2021] [Accepted: 02/25/2021] [Indexed: 11/17/2022] Open
Abstract
Bis(carboranyl)amides 1,1'-μ-(CH2NH(O)C(CH2)n-1,2-C2B10H11)2 (n = 0, 1) were prepared by the reactions of the corresponding carboranyl acyl chlorides with ethylenediamine. Crystal molecular structure of 1,1'-μ-(CH2NH(O)C-1,2-C2B10H11)2 was determined by single crystal X-ray diffraction. Treatment of bis(carboranyl)amides 1,1'-μ-(CH2NH(O)C(CH2)n-1,2-C2B10H11)2 with ammonium or cesium fluoride results in partial deboronation of the ortho-carborane cages to the nido-carborane ones with formation of [7,7'(8')-μ-(CH2NH(O)C(CH2)n-7,8-C2B9H11)2]2-. The attempted reaction of [7,7'(8')-μ-(CH2NH(O)CCH2-7,8-C2B9H11)2]2- with GdCl3 in 1,2-dimethoxy- ethane did not give the expected metallacarborane. The stability of different conformations of Gd-containing metallacarboranes has been estimated by quantum-chemical calculations using [3,3-μ-DME-3,3'-Gd(1,2-C2B9H11)2]- as a model. It was found that in the most stable conformation the CH groups of the dicarbollide ligands are in anti,anti-orientation with respect to the DME ligand, while any rotation of the dicarbollide ligand reduces the stability of the system. This makes it possible to rationalize the design of carborane ligands for the synthesis of gadolinium metallacarboranes on their base.
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Affiliation(s)
- Yasunobu Asawa
- School of Life Science and Technology, Tokyo Institute of Technology, Yokohama 226-8501, Japan;
| | - Aleksandra V. Arsent’eva
- A.N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28 Vavilov Str., 119991 Moscow, Russia; (A.V.A.); (S.A.A.); (A.A.A.); (K.Y.S.); (O.A.F.)
- Faculty of Chemical Pharmaceutical Technologies and Biomedical Products, D.I. Mendeleev Russian Chemical Technological University, 9 Miusskaya Sq., 125047 Moscow, Russia
| | - Sergey A. Anufriev
- A.N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28 Vavilov Str., 119991 Moscow, Russia; (A.V.A.); (S.A.A.); (A.A.A.); (K.Y.S.); (O.A.F.)
| | - Alexei A. Anisimov
- A.N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28 Vavilov Str., 119991 Moscow, Russia; (A.V.A.); (S.A.A.); (A.A.A.); (K.Y.S.); (O.A.F.)
- Higher Chemical College at the Russian Academy of Sciences, D.I. Mendeleev Russian Chemical Technological University, 9 Miusskaya Sq., 125047 Moscow, Russia
| | - Kyrill Yu. Suponitsky
- A.N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28 Vavilov Str., 119991 Moscow, Russia; (A.V.A.); (S.A.A.); (A.A.A.); (K.Y.S.); (O.A.F.)
- N.S. Kurnakov Institute of General and Inorganic Chemistry, Russian Academy of Sciences, 31 Leninsky Prosp., 119991 Moscow, Russia
| | - Oleg A. Filippov
- A.N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28 Vavilov Str., 119991 Moscow, Russia; (A.V.A.); (S.A.A.); (A.A.A.); (K.Y.S.); (O.A.F.)
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 16/10 Miklukho- Maklay Str., 117997 Moscow, Russia
| | - Hiroyuki Nakamura
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama, Kanagawa 226-8503, Japan;
| | - Igor B. Sivaev
- A.N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28 Vavilov Str., 119991 Moscow, Russia; (A.V.A.); (S.A.A.); (A.A.A.); (K.Y.S.); (O.A.F.)
- Basic Department of Chemistry of Innovative Materials and Technologies, G.V. Plekhanov Russian University of Economics, 36 Stremyannyi Line, 117997 Moscow, Russia
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10
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Nekvinda J, Kugler M, Holub J, El Anwar S, Brynda J, Pospíšilová K, Růžičková Z, Řezáčová P, Grüner B. Direct Introduction of an Alkylsulfonamido Group on C‐sites of Isomeric Dicarba‐
closo
‐dodecaboranes: The Influence of Stereochemistry on Inhibitory Activity against the Cancer‐Associated Carbonic Anhydrase IX Isoenzyme. Chemistry 2020; 26:16541-16553. [DOI: 10.1002/chem.202002809] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2020] [Revised: 07/28/2020] [Indexed: 12/30/2022]
Affiliation(s)
- Jan Nekvinda
- Department of Synthesis Institute of Inorganic Chemistry of, the Czech Academy of Sciences 25068 Řež Czech Republic
| | - Michael Kugler
- Institute of Molecular Genetics Czech Academy of Sciences Vídeňská 1083 14220 Prague 4 Czech Republic
- Institute of Organic Chemistry and Biochemistry Czech Academy of, Sciences Flemingovo nám. 2 16610 Prague Czech Republic
| | - Josef Holub
- Department of Synthesis Institute of Inorganic Chemistry of, the Czech Academy of Sciences 25068 Řež Czech Republic
| | - Suzan El Anwar
- Department of Synthesis Institute of Inorganic Chemistry of, the Czech Academy of Sciences 25068 Řež Czech Republic
| | - Jiří Brynda
- Institute of Molecular Genetics Czech Academy of Sciences Vídeňská 1083 14220 Prague 4 Czech Republic
- Institute of Organic Chemistry and Biochemistry Czech Academy of, Sciences Flemingovo nám. 2 16610 Prague Czech Republic
| | - Klára Pospíšilová
- Institute of Organic Chemistry and Biochemistry Czech Academy of, Sciences Flemingovo nám. 2 16610 Prague Czech Republic
| | - Zdeňka Růžičková
- Department of General and Inorganic Chemistry Faculty of Chemical Technology University of Pardubice Studentská 573 53210 Pardubice Czech Republic
| | - Pavlína Řezáčová
- Institute of Molecular Genetics Czech Academy of Sciences Vídeňská 1083 14220 Prague 4 Czech Republic
- Institute of Organic Chemistry and Biochemistry Czech Academy of, Sciences Flemingovo nám. 2 16610 Prague Czech Republic
| | - Bohumír Grüner
- Department of Synthesis Institute of Inorganic Chemistry of, the Czech Academy of Sciences 25068 Řež Czech Republic
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11
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Buzharevski A, Paskaš S, Sárosi MB, Laube M, Lönnecke P, Neumann W, Murganić B, Mijatović S, Maksimović-Ivanić D, Pietzsch J, Hey-Hawkins E. Carboranyl Derivatives of Rofecoxib with Cytostatic Activity against Human Melanoma and Colon Cancer Cells. Sci Rep 2020; 10:4827. [PMID: 32179835 PMCID: PMC7076013 DOI: 10.1038/s41598-020-59059-3] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2019] [Accepted: 01/24/2020] [Indexed: 12/12/2022] Open
Abstract
Owing to the involvement of cyclooxygenase-2 (COX-2) in carcinogenesis, COX-2-selective inhibitors are increasingly studied for their potential cytotoxic properties. Moreover, the incorporation of carboranes in structures of established anti-inflammatory drugs can improve the potency and metabolic stability of the inhibitors. Herein, we report the synthesis of carborane-containing derivatives of rofecoxib that display remarkable cytotoxic or cytostatic activity in the micromolar range with excellent selectivity for melanoma and colon cancer cell lines over normal cells. Furthermore, it was shown that the carborane-modified derivatives of rofecoxib showed different modes of action that were dependent on the cell type.
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Affiliation(s)
- Antonio Buzharevski
- Institut für Anorganische Chemie, Universität Leipzig, Johannisallee 29, D-04103, Leipzig, Germany
| | - Svetlana Paskaš
- Department of Immunology, Institute for Biological Research "Siniša Stanković"- National Institute of the Republic of Serbia", Belgrade University, Belgrade, Serbia
| | - Menyhárt-Botond Sárosi
- Institut für Anorganische Chemie, Universität Leipzig, Johannisallee 29, D-04103, Leipzig, Germany
| | - Markus Laube
- Helmholtz-Zentrum Dresden-Rossendorf, Institute of Radiopharmaceutical Cancer Research, Department of Radiopharmaceutical and Chemical Biology, Bautzner Landstrasse 400, D-01328, Dresden, Germany
| | - Peter Lönnecke
- Institut für Anorganische Chemie, Universität Leipzig, Johannisallee 29, D-04103, Leipzig, Germany
| | - Wilma Neumann
- Institut für Anorganische Chemie, Universität Leipzig, Johannisallee 29, D-04103, Leipzig, Germany
| | - Blagoje Murganić
- Department of Immunology, Institute for Biological Research "Siniša Stanković"- National Institute of the Republic of Serbia", Belgrade University, Belgrade, Serbia
| | - Sanja Mijatović
- Department of Immunology, Institute for Biological Research "Siniša Stanković"- National Institute of the Republic of Serbia", Belgrade University, Belgrade, Serbia
| | - Danijelа Maksimović-Ivanić
- Department of Immunology, Institute for Biological Research "Siniša Stanković"- National Institute of the Republic of Serbia", Belgrade University, Belgrade, Serbia
| | - Jens Pietzsch
- Helmholtz-Zentrum Dresden-Rossendorf, Institute of Radiopharmaceutical Cancer Research, Department of Radiopharmaceutical and Chemical Biology, Bautzner Landstrasse 400, D-01328, Dresden, Germany
- Technische Universität Dresden, Faculty of Chemistry and Food Chemistry, Mommsenstrasse 4, D-01062, Dresden, Germany
| | - Evamarie Hey-Hawkins
- Institut für Anorganische Chemie, Universität Leipzig, Johannisallee 29, D-04103, Leipzig, Germany.
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12
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Smyshliaeva LA, Varaksin MV, Fomina EK, Charushin VN, Chupakhin ON. Nucleophilic addition of indoles to carborancarboxaldehyde – A convenient synthetic strategy towards novel boron-enriched 3-indolylmethanols. AIP CONFERENCE PROCEEDINGS 2020; 2283:050051. [DOI: 10.1063/5.0028045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/03/2025]
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13
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Soluble epoxide hydrolase inhibitors with carboranes as non-natural 3-D pharmacophores. Eur J Med Chem 2020; 185:111766. [DOI: 10.1016/j.ejmech.2019.111766] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2019] [Revised: 09/24/2019] [Accepted: 10/06/2019] [Indexed: 01/01/2023]
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14
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Gozzi M, Murganic B, Drača D, Popp J, Coburger P, Maksimović‐Ivanić D, Mijatović S, Hey‐Hawkins E. Quinoline-Conjugated Ruthenacarboranes: Toward Hybrid Drugs with a Dual Mode of Action. ChemMedChem 2019; 14:2061-2074. [PMID: 31675152 PMCID: PMC6973020 DOI: 10.1002/cmdc.201900349] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2019] [Revised: 10/19/2019] [Indexed: 12/26/2022]
Abstract
The role of autophagy in cancer is often complex, ranging from tumor-promoting to -suppressing effects. In this study, two novel hybrid molecules were designed, containing a ruthenacarborane fragment conjugated with a known modulator of autophagy, namely a quinoline derivative. The complex closo-[3-(η6 -p-cymene)-1-(quinolin-8-yl-acetate)-3,1,2-RuC2 B9 H10 ] (4) showed a dual mode of action against the LN229 (human glioblastoma) cell line, where it inhibited tumor-promoting autophagy, and strongly inhibited cell proliferation, de facto blocking cellular division. These results, together with the tendency to spontaneously form nanoparticles in aqueous solution, make complex 4 a very promising drug candidate for further studies in vivo, for the treatment of autophagy-prone glioblastomas.
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Affiliation(s)
- Marta Gozzi
- Institute of Inorganic ChemistryLeipzig UniversityJohannisallee 2904103LeipzigGermany
| | - Blagoje Murganic
- National Institute of Republic of Serbia Department of Immunology Institute for Biological Research “Siniša Stanković”University of BelgradeBul. despota Stefana 14211060BelgradeSerbia
| | - Dijana Drača
- National Institute of Republic of Serbia Department of Immunology Institute for Biological Research “Siniša Stanković”University of BelgradeBul. despota Stefana 14211060BelgradeSerbia
| | - John Popp
- Institute of Inorganic ChemistryLeipzig UniversityJohannisallee 2904103LeipzigGermany
| | - Peter Coburger
- Institute of Inorganic ChemistryLeipzig UniversityJohannisallee 2904103LeipzigGermany
| | - Danijela Maksimović‐Ivanić
- National Institute of Republic of Serbia Department of Immunology Institute for Biological Research “Siniša Stanković”University of BelgradeBul. despota Stefana 14211060BelgradeSerbia
| | - Sanja Mijatović
- National Institute of Republic of Serbia Department of Immunology Institute for Biological Research “Siniša Stanković”University of BelgradeBul. despota Stefana 14211060BelgradeSerbia
| | - Evamarie Hey‐Hawkins
- Institute of Inorganic ChemistryLeipzig UniversityJohannisallee 2904103LeipzigGermany
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15
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Stockmann P, Gozzi M, Kuhnert R, Sárosi MB, Hey-Hawkins E. New keys for old locks: carborane-containing drugs as platforms for mechanism-based therapies. Chem Soc Rev 2019; 48:3497-3512. [PMID: 31214680 DOI: 10.1039/c9cs00197b] [Citation(s) in RCA: 177] [Impact Index Per Article: 29.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Icosahedral carboranes in medicine are still an emerging class of compounds with potential beneficial applications in drug design. These highly hydrophobic clusters are potential "new keys for old locks" which open up an exciting field of research for well-known, but challenging important therapeutic substrates, as demonstrated by the numerous examples discussed in this review.
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Affiliation(s)
- Philipp Stockmann
- Universität Leipzig, Fakultät für Chemie und Mineralogie, Institut für Anorganische Chemie, Johannisallee 29, 04103 Leipzig, Germany.
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16
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Asawa Y, Katsuragi K, Sato A, Yoshimori A, Tanuma SI, Nakamura H. Structure-based drug design of novel carborane-containing nicotinamide phosphoribosyltransferase inhibitors. Bioorg Med Chem 2019; 27:2832-2844. [DOI: 10.1016/j.bmc.2019.05.013] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2019] [Revised: 05/08/2019] [Accepted: 05/08/2019] [Indexed: 01/02/2023]
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17
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Buzharevski A, Paskas S, Laube M, Lönnecke P, Neumann W, Murganic B, Mijatovic S, Maksimovic-Ivanic D, Pietzsch J, Hey-Hawkins E. Carboranyl Analogues of Ketoprofen with Cytostatic Activity against Human Melanoma and Colon Cancer Cell Lines. ACS OMEGA 2019; 4:8824-8833. [PMID: 31459970 PMCID: PMC6648485 DOI: 10.1021/acsomega.9b00412] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2019] [Accepted: 04/17/2019] [Indexed: 05/04/2023]
Abstract
Ketoprofen is a widely used nonsteroidal anti-inflammatory drug (NSAID) that also exhibits cytotoxic activity against various cancers. This makes ketoprofen an attractive structural lead for the development of new NSAIDs and cytotoxic agents. Recently, the incorporation of carboranes as phenyl mimetics in structures of established drugs has emerged as an attractive strategy in drug design. Herein, we report the synthesis and evaluation of four novel carborane-containing derivatives of ketoprofen, two of which are prodrug esters with an nitric oxide-releasing moiety. One of these prodrug esters exhibited high cytostatic activity against melanoma and colon cancer cell lines. The most pronounced activity was found in cell lines that are sensitive to oxidative stress, which was apparently induced by the ketoprofen analogue.
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Affiliation(s)
- Antonio Buzharevski
- Institut
für Anorganische Chemie, Universität
Leipzig, Johannisallee 29, D-04103 Leipzig, Germany
| | - Svetlana Paskas
- Department
of Immunology, Institute for Biological Research “Sinisa Stankovic”, Belgrade University, Belgrade 11060, Serbia
| | - Markus Laube
- Institut
für Radiopharmazeutische Krebsforschung, Helmholtz-Zentrum Dresden-Rossendorf, Bautzner Landstrasse 400, D-01328 Dresden, Germany
| | - Peter Lönnecke
- Institut
für Anorganische Chemie, Universität
Leipzig, Johannisallee 29, D-04103 Leipzig, Germany
| | - Wilma Neumann
- Institut
für Anorganische Chemie, Universität
Leipzig, Johannisallee 29, D-04103 Leipzig, Germany
| | - Blagoje Murganic
- Department
of Immunology, Institute for Biological Research “Sinisa Stankovic”, Belgrade University, Belgrade 11060, Serbia
| | - Sanja Mijatovic
- Department
of Immunology, Institute for Biological Research “Sinisa Stankovic”, Belgrade University, Belgrade 11060, Serbia
| | - Danijela Maksimovic-Ivanic
- Department
of Immunology, Institute for Biological Research “Sinisa Stankovic”, Belgrade University, Belgrade 11060, Serbia
| | - Jens Pietzsch
- Institut
für Radiopharmazeutische Krebsforschung, Helmholtz-Zentrum Dresden-Rossendorf, Bautzner Landstrasse 400, D-01328 Dresden, Germany
- Faculty
of Chemistry and Food Chemistry, Technische
Universität Dresden, Mommsenstrasse 4, D-01062 Dresden, Germany
| | - Evamarie Hey-Hawkins
- Institut
für Anorganische Chemie, Universität
Leipzig, Johannisallee 29, D-04103 Leipzig, Germany
- E-mail: . Fax: (+49)341-9739319
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18
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Moldovan RP, Wenzel B, Teodoro R, Neumann W, Dukic-Stefanovic S, Kraus W, Rong P, Deuther-Conrad W, Hey-Hawkins E, Krügel U, Brust P. Studies towards the development of a PET radiotracer for imaging of the P2Y 1 receptors in the brain: synthesis, 18F-labeling and preliminary biological evaluation. Eur J Med Chem 2019; 165:142-159. [PMID: 30665144 DOI: 10.1016/j.ejmech.2019.01.006] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2018] [Revised: 12/20/2018] [Accepted: 01/04/2019] [Indexed: 12/14/2022]
Abstract
Purine nucleotides such as ATP and ADP are important extracellular signaling molecules in almost all tissues activating various subtypes of purinoreceptors. In the brain, the P2Y1 receptor (P2Y1R) subtype mediates trophic functions like differentiation and proliferation, and modulates fast synaptic transmission, both suggested to be affected in diseases of the central nervous system. Research on P2Y1R is limited because suitable brain-penetrating P2Y1R-selective tracers are not yet available. Here, we describe the first efforts to develop an 18F-labeled PET tracer based on the structure of the highly affine and selective, non-nucleotidic P2Y1R allosteric modulator 1-(2-[2-(tert-butyl)phenoxy]pyridin-3-yl)-3-[4-(trifluoromethoxy)phenyl]urea (7). A small series of fluorinated compounds was developed by systematic modification of the p-(trifluoromethoxy)phenyl, the urea and the 2-pyridyl subunits of the lead compound 7. Additionally, the p-(trifluoromethoxy)phenyl subunit was substituted by carborane, a boron-rich cluster with potential applicability in boron neutron capture therapy (BNCT). By functional assays, the new fluorinated derivative 1-{2-[2-(tert-butyl)phenoxy]pyridin-3-yl}-3-[4-(2-fluoroethyl)phenyl]urea (18) was identified with a high P2Y1R antagonistic potency (IC50 = 10 nM). Compound [18F]18 was radiosynthesized by using tetra-n-butyl ammonium [18F]fluoride with high radiochemical purity, radiochemical yield and molar activities. Investigation of brain homogenates using hydrophilic interaction chromatography (HILIC) revealed [18F]fluoride as major radiometabolite. Although [18F]18 showed fast in vivo metabolization, the high potency and unique allosteric binding mode makes this class of compounds interesting for further optimizations and investigation of the theranostic potential as PET tracer and BNCT agent.
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Affiliation(s)
- Rareş-Petru Moldovan
- Helmholtz-Zentrum Dresden-Rossendorf, Institute of Radiopharmaceutical Cancer Research, Permoserstraße 15, 04318, Leipzig, Germany.
| | - Barbara Wenzel
- Helmholtz-Zentrum Dresden-Rossendorf, Institute of Radiopharmaceutical Cancer Research, Permoserstraße 15, 04318, Leipzig, Germany
| | - Rodrigo Teodoro
- Helmholtz-Zentrum Dresden-Rossendorf, Institute of Radiopharmaceutical Cancer Research, Permoserstraße 15, 04318, Leipzig, Germany
| | - Wilma Neumann
- Institute of Inorganic Chemistry, Faculty of Chemistry and Mineralogy, Universität Leipzig, 04103, Leipzig, Germany
| | - Sladjana Dukic-Stefanovic
- Helmholtz-Zentrum Dresden-Rossendorf, Institute of Radiopharmaceutical Cancer Research, Permoserstraße 15, 04318, Leipzig, Germany
| | - Werner Kraus
- BAM Federal Institute for Materials Research and Testing, Richard-Willstätter-Str. 11, 12489, Berlin, Germany
| | - Peijing Rong
- Institute of Acupuncture and Moxibustion, China Academy of Chinese Medical Sciences, 100700, Beijing, China
| | - Winnie Deuther-Conrad
- Helmholtz-Zentrum Dresden-Rossendorf, Institute of Radiopharmaceutical Cancer Research, Permoserstraße 15, 04318, Leipzig, Germany
| | - Evamarie Hey-Hawkins
- Institute of Inorganic Chemistry, Faculty of Chemistry and Mineralogy, Universität Leipzig, 04103, Leipzig, Germany
| | - Ute Krügel
- Rudolf Boehm Institute of Pharmacology and Toxicology, Medical Faculty, Universität Leipzig, 04107, Leipzig, Germany
| | - Peter Brust
- Helmholtz-Zentrum Dresden-Rossendorf, Institute of Radiopharmaceutical Cancer Research, Permoserstraße 15, 04318, Leipzig, Germany
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19
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Kuhnert R, Sárosi MB, George S, Lönnecke P, Hofmann B, Steinhilber D, Steinmann S, Schneider-Stock R, Murganić B, Mijatović S, Maksimović-Ivanić D, Hey-Hawkins E. Carborane-Based Analogues of 5-Lipoxygenase Inhibitors Co-inhibit Heat Shock Protein 90 in HCT116 Cells. ChemMedChem 2018; 14:255-261. [DOI: 10.1002/cmdc.201800651] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2018] [Revised: 11/12/2018] [Indexed: 12/31/2022]
Affiliation(s)
- Robert Kuhnert
- Faculty of Chemistry and Mineralogy; Institute of Inorganic Chemistry; Universität Leipzig; Johannisallee 29 04103 Leipzig Germany
| | - Menyhárt-Botond Sárosi
- Faculty of Chemistry and Mineralogy; Institute of Inorganic Chemistry; Universität Leipzig; Johannisallee 29 04103 Leipzig Germany
| | - Sven George
- Institut für Pharmazeutische Chemie; Johann-Wolfgang-Goethe-Universität Frankfurt; Max-von-Laue-Straße 9 60438 Frankfurt Germany
| | - Peter Lönnecke
- Faculty of Chemistry and Mineralogy; Institute of Inorganic Chemistry; Universität Leipzig; Johannisallee 29 04103 Leipzig Germany
| | - Bettina Hofmann
- Institut für Pharmazeutische Chemie; Johann-Wolfgang-Goethe-Universität Frankfurt; Max-von-Laue-Straße 9 60438 Frankfurt Germany
| | - Dieter Steinhilber
- Institut für Pharmazeutische Chemie; Johann-Wolfgang-Goethe-Universität Frankfurt; Max-von-Laue-Straße 9 60438 Frankfurt Germany
| | - Sara Steinmann
- Pathologisches Institut; Universität Erlangen; Universitätsstraße 22 91054 Erlangen Germany
| | - Regine Schneider-Stock
- Pathologisches Institut; Universität Erlangen; Universitätsstraße 22 91054 Erlangen Germany
| | - Blagoje Murganić
- Department of Immunology, Institute for Biological Research “Sinisa Stankovic”; University of Belgrade; Bul. despota Stefana 142 11060 Belgrade Serbia
| | - Sanja Mijatović
- Department of Immunology, Institute for Biological Research “Sinisa Stankovic”; University of Belgrade; Bul. despota Stefana 142 11060 Belgrade Serbia
| | - Danijela Maksimović-Ivanić
- Department of Immunology, Institute for Biological Research “Sinisa Stankovic”; University of Belgrade; Bul. despota Stefana 142 11060 Belgrade Serbia
| | - Evamarie Hey-Hawkins
- Faculty of Chemistry and Mineralogy; Institute of Inorganic Chemistry; Universität Leipzig; Johannisallee 29 04103 Leipzig Germany
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20
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Hofmann S, Lindner J, Beck-Sickinger AG, Hey-Hawkins E, Bellmann-Sickert K. Carbaboranylation of Truncated C-Terminal Neuropeptide Y Analogue Leads to Full hY1
Receptor Agonism. Chembiochem 2018; 19:2300-2306. [DOI: 10.1002/cbic.201800343] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2018] [Indexed: 12/25/2022]
Affiliation(s)
- Sven Hofmann
- Faculty of Life Sciences; Institute of Biochemistry; Leipzig University; Brüderstrasse 34 04103 Leipzig Germany
| | - Josephin Lindner
- Faculty of Life Sciences; Institute of Biochemistry; Leipzig University; Brüderstrasse 34 04103 Leipzig Germany
| | - Annette G. Beck-Sickinger
- Faculty of Life Sciences; Institute of Biochemistry; Leipzig University; Brüderstrasse 34 04103 Leipzig Germany
| | - Evamarie Hey-Hawkins
- Faculty of Chemistry and Mineralogy; Institute of Inorganic Chemistry, Leipzig University; Johannisallee 29 04103 Leipzig Germany
| | - Kathrin Bellmann-Sickert
- Faculty of Life Sciences; Institute of Biochemistry; Leipzig University; Brüderstrasse 34 04103 Leipzig Germany
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21
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Sárosi MB, Lybrand TP. Molecular Dynamics Simulation of Cyclooxygenase-2 Complexes with Indomethacin closo-Carborane Analogs. J Chem Inf Model 2018; 58:1990-1999. [PMID: 30067351 DOI: 10.1021/acs.jcim.8b00275] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Molecular dynamics simulation of carborane-containing ligands in complex with target enzymes is a challenging task due to the unique structure and properties of the carborane substituents and relative lack of appropriate experimental data to help assess the quality of carborane force field parameters. Here, we report results from energy minimization calculations for a series of carborane-amino acid complexes using carborane force field parameters published previously in the literature and adapted for use with the AMBER ff99SB and ff14SB potential functions. These molecular mechanics results agree well with quantum mechanical geometry optimization calculations obtained using dispersion-corrected density functional theory methods, suggesting that the carborane force field parameters should be suitable for more detailed calculations. We then performed molecular dynamics simulations for the 1,2-, 1,7-, and 1,12-dicarba- closo-dodecaborane(12) derivatives of indomethacin methyl ester bound with cyclooxygenase-2. The simulation results suggest that only the ortho-carborane derivative forms a stable complex, in agreement with experimental findings, and provide insight into the possible molecular basis for isomer binding selectivity.
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Affiliation(s)
- Menyhárt-Botond Sárosi
- Institute of Inorganic Chemistry, Faculty of Chemistry and Mineralogy , Leipzig University , Johannisallee 29 , D-04103 Leipzig , Germany
| | - Terry P Lybrand
- Departments of Chemistry and Pharmacology, Center for Structural Biology , Vanderbilt University , Nashville , Tennessee 37235-1822 , United States
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22
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Non-natural lipids: Synthesis and characterization of esters from meta-carborane-1-carboxylic acid. Chem Phys Lipids 2018; 210:149-154. [DOI: 10.1016/j.chemphyslip.2017.08.008] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2017] [Revised: 08/02/2017] [Accepted: 08/17/2017] [Indexed: 01/09/2023]
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23
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Singh P, Kaur S, Sharma A, Kaur G, Bhatti R. TNF-α and IL-6 inhibitors: Conjugates of N-substituted indole and aminophenylmorpholin-3-one as anti-inflammatory agents. Eur J Med Chem 2017; 140:92-103. [DOI: 10.1016/j.ejmech.2017.09.003] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2017] [Revised: 09/01/2017] [Accepted: 09/03/2017] [Indexed: 01/01/2023]
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24
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Sárosi MB, Neumann W, Lybrand TP, Hey-Hawkins E. Molecular Modeling of the Interactions between Carborane-Containing Analogs of Indomethacin and Cyclooxygenase-2. J Chem Inf Model 2017. [DOI: 10.1021/acs.jcim.7b00113] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Menyhárt-Botond Sárosi
- Institute
of Inorganic Chemistry, Faculty of Chemistry and Mineralogy, Leipzig University, Johannisallee 29, D-04103 Leipzig, Germany
| | - Wilma Neumann
- Institute
of Inorganic Chemistry, Faculty of Chemistry and Mineralogy, Leipzig University, Johannisallee 29, D-04103 Leipzig, Germany
| | - Terry P. Lybrand
- Center
for Structural Biology, Departments of Chemistry and Pharmacology, Vanderbilt University, Nashville, Tennessee 37232-8725, United States
| | - Evamarie Hey-Hawkins
- Institute
of Inorganic Chemistry, Faculty of Chemistry and Mineralogy, Leipzig University, Johannisallee 29, D-04103 Leipzig, Germany
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25
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Leśnikowski ZJ. Challenges and Opportunities for the Application of Boron Clusters in Drug Design. J Med Chem 2016; 59:7738-58. [PMID: 27124656 DOI: 10.1021/acs.jmedchem.5b01932] [Citation(s) in RCA: 239] [Impact Index Per Article: 26.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
There are two branches in boron medicinal chemistry: the first focuses on single boron atom compounds, and the second utilizes boron clusters. Boron clusters and their heteroatom counterparts belong to the family of cage compounds. A subset of this extensive class of compounds includes dicarbadodecaboranes, which have the general formula C2B10H12, and their metal biscarboranyl complexes, metallacarboranes, with the formula [M(C2B10H12)2(-2)]. The unique properties of boron clusters have resulted in their utilization in applications such as in pharmacophores, as scaffolds in molecular construction, and as modulators of bioactive compounds. This Perspective presents an overview of the properties of boron clusters that are pertinent for drug discovery, recent applications in the design of various classes of drugs, and the potential use of boron clusters in the construction of new pharmaceuticals.
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Affiliation(s)
- Zbigniew J Leśnikowski
- Institute of Medical Biology, Polish Academy of Sciences , Laboratory of Molecular Virology and Biological Chemistry, 106 Lodowa St., Lodz 93-232, Poland
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26
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Abstract
INTRODUCTION After decades of development, the medicinal chemistry of compounds that contain a single boron atom has matured to the present status of having equal rights with other branches of drug discovery, although it remains a relative newcomer. In contrast, the medicinal chemistry of boron clusters is less advanced, but it is expanding and may soon become a productive area of drug discovery. AREAS COVERED The author reviews the current developments of medicinal chemistry of boron and its applications in drug design. First generation boron drugs that bear a single boron atom and second generation boron drugs that utilize boron clusters as pharmacophores or modulators of bioactive molecules are discussed. The advantages and gaps in our current understanding of boron medicinal chemistry, with a special focus on boron clusters, are highlighted. EXPERT OPINION Boron is not a panacea for every drug discovery problem, but there is a good chance that it will become a useful addition to the medicinal chemistry tool box. The present status of boron resembles the medicinal chemistry status of fluorine three decades ago; indeed, currently, approximately 20% of pharmaceuticals on the market contain fluorine. The fact that novel boron compounds, especially those based on abiotic polyhedral boron hydrides, are currently unfamiliar could be advantageous because organisms may be less prone to developing resistance against boron cluster-based drugs.
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Affiliation(s)
- Zbigniew J Leśnikowski
- a Institute of Medical Biology, Polish Academy of Sciences , Laboratory of Molecular Virology and Biological Chemistry , Lodz , Poland
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27
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Laube M, Kniess T, Pietzsch J. Development of Antioxidant COX-2 Inhibitors as Radioprotective Agents for Radiation Therapy-A Hypothesis-Driven Review. Antioxidants (Basel) 2016; 5:antiox5020014. [PMID: 27104573 PMCID: PMC4931535 DOI: 10.3390/antiox5020014] [Citation(s) in RCA: 48] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2016] [Revised: 04/08/2016] [Accepted: 04/11/2016] [Indexed: 12/12/2022] Open
Abstract
Radiation therapy (RT) evolved to be a primary treatment modality for cancer patients. Unfortunately, the cure or relief of symptoms is still accompanied by radiation-induced side effects with severe acute and late pathophysiological consequences. Inhibitors of cyclooxygenase-2 (COX-2) are potentially useful in this regard because radioprotection of normal tissue and/or radiosensitizing effects on tumor tissue have been described for several compounds of this structurally diverse class. This review aims to substantiate the hypothesis that antioxidant COX-2 inhibitors are promising radioprotectants because of intercepting radiation-induced oxidative stress and inflammation in normal tissue, especially the vascular system. For this, literature reporting on COX inhibitors exerting radioprotective and/or radiosensitizing action as well as on antioxidant COX inhibitors will be reviewed comprehensively with the aim to find cross-points of both and, by that, stimulate further research in the field of radioprotective agents.
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Affiliation(s)
- Markus Laube
- Department of Radiopharmaceutical and Chemical Biology, Institute of Radiopharmaceutical Cancer Research, Helmholtz-Zentrum Dresden-Rossendorf, Bautzner Landstrasse 400, Dresden D-01328, Germany.
| | - Torsten Kniess
- Department of Radiopharmaceutical and Chemical Biology, Institute of Radiopharmaceutical Cancer Research, Helmholtz-Zentrum Dresden-Rossendorf, Bautzner Landstrasse 400, Dresden D-01328, Germany.
| | - Jens Pietzsch
- Department of Radiopharmaceutical and Chemical Biology, Institute of Radiopharmaceutical Cancer Research, Helmholtz-Zentrum Dresden-Rossendorf, Bautzner Landstrasse 400, Dresden D-01328, Germany.
- Department of Chemistry and Food Chemistry, Technische Universität Dresden, Dresden D-01062, Germany.
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28
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Neumann W, Xu S, Sárosi MB, Scholz MS, Crews BC, Ghebreselasie K, Banerjee S, Marnett LJ, Hey-Hawkins E. nido-Dicarbaborate Induces Potent and Selective Inhibition of Cyclooxygenase-2. ChemMedChem 2016; 11:175-8. [PMID: 26088701 PMCID: PMC4900168 DOI: 10.1002/cmdc.201500199] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2015] [Indexed: 01/13/2023]
Abstract
Carbaboranes are increasingly studied as pharmacophores, particularly as replacements for aromatic systems. However, especially ortho-carbaborane is prone to degradation of the cluster, which hampers biological application. This study demonstrates that deboronation of the cluster may not only lead to a more active analogue, but can also improve the solubility and stability of a carbaborane-containing inhibitor. Notably, introduction of a nido-dicarbaborate cluster into the cyclooxygenase (COX) inhibitor indomethacin results in remarkably increased inhibitory potency and selectivity for COX-2 relative to the respective phenyl analogue. The first crystal structure of a carbaborane-containing inhibitor bound to COX-2 further reveals a novel binding mode for the inhibitor that is strikingly different from that of indomethacin. These results indicate that nido-dicarbaborate is a promising pharmacophore that exhibits properties which are also highly beneficial for its introduction into other inhibitor classes.
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Affiliation(s)
- Wilma Neumann
- Institut für Anorganische Chemie, Universität Leipzig, Johannisallee 29, 04103, Leipzig, Germany
| | - Shu Xu
- Department of Biochemistry, Vanderbilt University School of Medicine, 23rdAvenue South & Pierce, Nashville, TN 37232, USA
| | - Menyhárt B Sárosi
- Institut für Anorganische Chemie, Universität Leipzig, Johannisallee 29, 04103, Leipzig, Germany
| | - Matthias S Scholz
- Institut für Anorganische Chemie, Universität Leipzig, Johannisallee 29, 04103, Leipzig, Germany
- Pharmazeutisches Institut, Rheinische Friedrich-Wilhelms-Universität Bonn, An der Immenburg 4, 53121, Bonn, Germany
| | - Brenda C Crews
- Department of Biochemistry, Vanderbilt University School of Medicine, 23rdAvenue South & Pierce, Nashville, TN 37232, USA
| | - Kebreab Ghebreselasie
- Department of Biochemistry, Vanderbilt University School of Medicine, 23rdAvenue South & Pierce, Nashville, TN 37232, USA
| | - Surajit Banerjee
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853, USA)
- Northeastern Collaborative Access Team, Argonne National Laboratory, Argonne, IL 60439, USA
| | - Lawrence J Marnett
- Department of Biochemistry, Vanderbilt University School of Medicine, 23rdAvenue South & Pierce, Nashville, TN 37232, USA
| | - Evamarie Hey-Hawkins
- Institut für Anorganische Chemie, Universität Leipzig, Johannisallee 29, 04103, Leipzig, Germany.
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29
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Neumann W, Frank R, Hey-Hawkins E. One-pot synthesis of an indole-substituted 7,8-dicarba-nido-dodecahydroundecaborate(-1). Dalton Trans 2015; 44:1748-53. [PMID: 25465230 DOI: 10.1039/c4dt03218g] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
Carbaboranes are increasingly used as pharmacophores to replace phenyl substituents in established drug molecules. In contrast to traditional organic chemistry, elaborate procedures to introduce functionality frequently fail in the case of carbaboranes and their chemistry is often hampered by degradation of the cluster. Herein, the development of a one-pot synthesis of a water-soluble N-nido-dicarbaborato indole is presented, including a proposed mechanism for the reaction sequence. These studies provide useful synthetic tools for the conjugation of two important pharmacophores, indoles and carbaboranes.
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Affiliation(s)
- W Neumann
- Universität Leipzig, Institut für Anorganische Chemie, Johannisallee 29, 04103 Leipzig, Germany.
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30
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Cabrera-González J, Xochitiotzi-Flores E, Viñas C, Teixidor F, García-Ortega H, Farfán N, Santillan R, Parella T, Núñez R. High-Boron-Content Porphyrin-Cored Aryl Ether Dendrimers: Controlled Synthesis, Characterization, and Photophysical Properties. Inorg Chem 2015; 54:5021-31. [DOI: 10.1021/acs.inorgchem.5b00618] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Justo Cabrera-González
- Institut de Ciència de Materials de Barcelona (ICMAB-CSIC), Campus UAB, 08193 Bellaterra, Barcelona, Spain
| | - Elba Xochitiotzi-Flores
- Facultad
de Química, Departamento de Química Orgánica, Universidad Nacional Autónoma de México (UNAM), 04510 México D.F., México
| | - Clara Viñas
- Institut de Ciència de Materials de Barcelona (ICMAB-CSIC), Campus UAB, 08193 Bellaterra, Barcelona, Spain
| | - Francesc Teixidor
- Institut de Ciència de Materials de Barcelona (ICMAB-CSIC), Campus UAB, 08193 Bellaterra, Barcelona, Spain
| | - Héctor García-Ortega
- Facultad
de Química, Departamento de Química Orgánica, Universidad Nacional Autónoma de México (UNAM), 04510 México D.F., México
| | - Norberto Farfán
- Facultad
de Química, Departamento de Química Orgánica, Universidad Nacional Autónoma de México (UNAM), 04510 México D.F., México
| | - Rosa Santillan
- Departamento de Química, Centro de Investigación y de Estudios Avanzados del IPN, Apartado Postal 14-740, 07000 México D.F., México
| | - Teodor Parella
- Servei de Ressonància Magnètica
Nuclear, Universitat Autònoma de Barcelona (UAB), E-08193 Bellaterra, Barcelona, Spain
| | - Rosario Núñez
- Institut de Ciència de Materials de Barcelona (ICMAB-CSIC), Campus UAB, 08193 Bellaterra, Barcelona, Spain
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31
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Abstract
AbstractBoron clusters have been employed successfully as constituents in bioactive substances. In this review, the perspectives of boron clusters for drug design and problems to be solved for a broader application are discussed, and a list of actions is given for overcoming the problems.
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Affiliation(s)
- Detlef Gabel
- 1Life Science and Health, Jacobs University Bremen, Bremen, Germany
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32
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Frank R, Ahrens V, Boehnke S, Hofmann S, Kellert M, Saretz S, Pandey S, Sárosi M, Bartók Á, Beck-Sickinger AG, Hey-Hawkins E. Carbaboranes – more than just phenyl mimetics. PURE APPL CHEM 2015. [DOI: 10.1515/pac-2014-1006] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
AbstractDicarba-closo-dodecaboranes(12) (C2B10H12, carbaboranes) are highly hydrophobic and stable icosahedral carbon-containing boron clusters. The cage framework of these clusters can be modified with a variety of substituents, both at the carbon and at the boron atoms. Substituted carbaboranes are of interest in medicine as boron neutron capture therapy (BNCT) agents or as pharmacophores. High and selective accumulation in tumour cells is an important requirement for a BNCT agent and is achieved by incorporating boron-rich, water-soluble carbaborane derivatives into breast tumour-selective modified neuropeptide Y, [F7, P34]-NPY. Preliminary studies showed that the receptor binding affinity and signal transduction of the boron-modified peptides were very well retained. Use of carbaboranes as pharmacophores was shown by replacement of Bpa32 (Bpa=benzoylphenylalanine) in the reduced-size NPY analogue [Pro30, Nle31, Bpa32, Leu34]-NPY 28–36 by ortho-carbaboranyl propanoic acid. The inclusion of the carbaborane derivative resulted in a short NPY agonist with an interesting hY2R/hY4R preference. This might be a promising approach in the field of anti-obesity drug development.
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Affiliation(s)
- René Frank
- 1Institute of Inorganic Chemistry, Universität Leipzig, Johannisallee 29, D-04103 Leipzig, Germany
| | - Verena Ahrens
- 2Institute of Biochemistry, Universität Leipzig, Brüderstraße 34, D-04103 Leipzig, Germany
| | - Solveig Boehnke
- 1Institute of Inorganic Chemistry, Universität Leipzig, Johannisallee 29, D-04103 Leipzig, Germany
| | - Sven Hofmann
- 2Institute of Biochemistry, Universität Leipzig, Brüderstraße 34, D-04103 Leipzig, Germany
| | - Martin Kellert
- 1Institute of Inorganic Chemistry, Universität Leipzig, Johannisallee 29, D-04103 Leipzig, Germany
| | - Stefan Saretz
- 1Institute of Inorganic Chemistry, Universität Leipzig, Johannisallee 29, D-04103 Leipzig, Germany
| | - Souvik Pandey
- 1Institute of Inorganic Chemistry, Universität Leipzig, Johannisallee 29, D-04103 Leipzig, Germany
| | - Menyhárt Sárosi
- 1Institute of Inorganic Chemistry, Universität Leipzig, Johannisallee 29, D-04103 Leipzig, Germany
| | - Ágota Bartók
- 1Institute of Inorganic Chemistry, Universität Leipzig, Johannisallee 29, D-04103 Leipzig, Germany
| | | | - Evamarie Hey-Hawkins
- 1Institute of Inorganic Chemistry, Universität Leipzig, Johannisallee 29, D-04103 Leipzig, Germany
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33
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Cortes-Ciriano I, Murrell DS, van Westen GJ, Bender A, Malliavin TE. Prediction of the potency of mammalian cyclooxygenase inhibitors with ensemble proteochemometric modeling. J Cheminform 2015; 7:1. [PMID: 25705261 PMCID: PMC4335128 DOI: 10.1186/s13321-014-0049-z] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2014] [Accepted: 11/21/2014] [Indexed: 12/16/2022] Open
Abstract
Cyclooxygenases (COX) are present in the body in two isoforms, namely: COX-1, constitutively expressed, and COX-2, induced in physiopathological conditions such as cancer or chronic inflammation. The inhibition of COX with non-steroideal anti-inflammatory drugs (NSAIDs) is the most widely used treatment for chronic inflammation despite the adverse effects associated to prolonged NSAIDs intake. Although selective COX-2 inhibition has been shown not to palliate all adverse effects (e.g. cardiotoxicity), there are still niche populations which can benefit from selective COX-2 inhibition. Thus, capitalizing on bioactivity data from both isoforms simultaneously would contribute to develop COX inhibitors with better safety profiles. We applied ensemble proteochemometric modeling (PCM) for the prediction of the potency of 3,228 distinct COX inhibitors on 11 mammalian cyclooxygenases. Ensemble PCM models ([Formula: see text], and RMSEtest = 0.71) outperformed models exclusively trained on compound ([Formula: see text], and RMSEtest = 1.09) or protein descriptors ([Formula: see text] and RMSEtest = 1.10) on the test set. Moreover, PCM predicted COX potency for 1,086 selective and non-selective COX inhibitors with [Formula: see text] and RMSEtest = 0.76. These values are in agreement with the maximum and minimum achievable [Formula: see text] and RMSEtest values of approximately 0.68 for both metrics. Confidence intervals for individual predictions were calculated from the standard deviation of the predictions from the individual models composing the ensembles. Finally, two substructure analysis pipelines singled out chemical substructures implicated in both potency and selectivity in agreement with the literature. Graphical AbstractPrediction of uncorrelated bioactivity profiles for mammalian COX inhibitors with Ensemble Proteochemometric Modeling.
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Affiliation(s)
- Isidro Cortes-Ciriano
- Département de Biologie Structurale et Chimie, Institut Pasteur, Unité de Bioinformatique Structurale; CNRS UMR 3825, 25, rue du Dr Roux, Paris, 75015 France
| | - Daniel S Murrell
- Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Cambridge, UK
| | - Gerard Jp van Westen
- European Molecular Biology Laboratory European Bioinformatics Institute Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD UK
| | - Andreas Bender
- Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Cambridge, UK
| | - Thérèse E Malliavin
- Département de Biologie Structurale et Chimie, Institut Pasteur, Unité de Bioinformatique Structurale; CNRS UMR 3825, 25, rue du Dr Roux, Paris, 75015 France
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34
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Nie Y, Wang Y, Miao J, Bian D, Zhang Z, Cui Y, Sun G. Syntheses and structural characterization of o-carboranylamides with direct cage-amide bond. Dalton Trans 2014; 43:5083-94. [PMID: 24468795 DOI: 10.1039/c3dt52785a] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Reactions of lithio-o-carborane with isocyanates under various conditions were studied, and the structural features of the resulting carboranylamides are described. The reactions of o-carborane (o-C2B10H12), n-BuLi (two equiv.) and two equiv. of (substituted) phenylisocyanate, pentylisocyanate and p-ethylphenylthioisocyanate in diethyl ether, respectively, led, after workup, to the corresponding mono-substituted carboranylamide 2a-g and carboranylthioamide 5 in low to moderate yields, and only with RNCO (R = Ph, m-MeOC6H4, pentyl) could disubstituted products 3a-c be isolated. The reaction with phenylisocyanate afforded the mono-amide and di-amide products in a ratio of approximately 1 : 2, whereas in the other two reactions the ratios are approximately 4 : 1 and 3 : 2, respectively. In tetrahydrofuran all the reactions attempted with RNCO (R = Ph, p-IC6H4, m-NCC6H4 and pentyl) gave more monoamide products than those in diethyl ether. With phenylisocyanate no diamide product was isolated and with pentylisocyanate the ratio between monoamide and diamide is approximately 3.5 : 1. The new carboranylamides were characterized by means of elemental analyses, IR and NMR spectroscopy and mass spectrometry, as well as single-crystal X-ray diffraction analyses of 2a-f, 3a and 5.
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Affiliation(s)
- Yong Nie
- School of Chemistry and Chemical Engineering, University of Jinan, 106 Jiwei Road, 250022 Jinan, P. R. China.
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35
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Abuo-Rahma GEDA, Abdel-Aziz M, Farag NA, Kaoud TS. Novel 1-[4-(Aminosulfonyl)phenyl]-1H-1,2,4-triazole derivatives with remarkable selective COX-2 inhibition: Design, synthesis, molecular docking, anti-inflammatory and ulcerogenicity studies. Eur J Med Chem 2014; 83:398-408. [DOI: 10.1016/j.ejmech.2014.06.049] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2014] [Revised: 06/08/2014] [Accepted: 06/24/2014] [Indexed: 11/24/2022]
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36
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Narsinghani T, Sharma R. Lead Optimization on Conventional Non-Steroidal Anti-Inflammatory Drugs: An Approach to Reduce Gastrointestinal Toxicity. Chem Biol Drug Des 2014; 84:1-23. [DOI: 10.1111/cbdd.12292] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2013] [Revised: 10/18/2013] [Accepted: 11/12/2013] [Indexed: 01/17/2023]
Affiliation(s)
- Tamanna Narsinghani
- School of Pharmacy; Devi Ahilya Vishwavidyalaya; Takshashila Campus, Ring Road Indore 452 001 MP India
| | - Rajesh Sharma
- School of Pharmacy; Devi Ahilya Vishwavidyalaya; Takshashila Campus, Ring Road Indore 452 001 MP India
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37
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El-Zaria ME, Genady AR, Janzen N, Petlura CI, Beckford Vera DR, Valliant JF. Preparation and evaluation of carborane-derived inhibitors of prostate specific membrane antigen (PSMA). Dalton Trans 2014; 43:4950-61. [DOI: 10.1039/c3dt53189a] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Carborane-derived inhibitors of prostate specific membrane antigen are reported. Compounds were prepared from C-hydroxy-carboranes and screened in vitro and in vivo.
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Affiliation(s)
- Mohamed E. El-Zaria
- Department of Chemistry and Chemical Biology
- McMaster University
- Hamilton, Canada
- Department of Chemistry
- Faculty of Science
| | - Afaf R. Genady
- Department of Chemistry and Chemical Biology
- McMaster University
- Hamilton, Canada
- Department of Chemistry
- Faculty of Science
| | - Nancy Janzen
- Department of Chemistry and Chemical Biology
- McMaster University
- Hamilton, Canada
| | | | | | - John F. Valliant
- Department of Chemistry and Chemical Biology
- McMaster University
- Hamilton, Canada
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38
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Kreienbrink A, Heinicke S, Duong Pham TT, Frank R, Lönnecke P, Hey-Hawkins E. Carbaborane-Substituted 1,2,3-Triphospholanes and 1-Aza-2,5-diphospholane: New Synthetic Approaches. Chemistry 2013; 20:1434-9. [DOI: 10.1002/chem.201302878] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2013] [Indexed: 11/10/2022]
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39
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Laube M, Neumann W, Scholz M, Lönnecke P, Crews B, Marnett LJ, Pietzsch J, Kniess T, Hey-Hawkins E. 2-Carbaborane-3-phenyl-1H-indoles--synthesis via McMurry reaction and cyclooxygenase (COX) inhibition activity. ChemMedChem 2013; 8:329-35. [PMID: 23303738 DOI: 10.1002/cmdc.201200455] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2012] [Revised: 12/03/2012] [Indexed: 01/03/2023]
Abstract
Cyclooxygenase-2 (COX-2) inhibitors have been the focus of medicinal chemistry efforts for years, and many compounds that exhibit high selectivity and affinity have been developed. As carbaboranes represent interesting pharmacophores as phenyl mimetics in drug development, this paper presents the synthesis of carbaboranyl derivatives of COX-2-selective 2,3-disubstituted indoles. Despite the lability of carbaboranes under reducing conditions, 2-carbaborane-3-phenyl-1H-indoles could be synthesized by McMurry cyclization of the corresponding amides. Whereas the meta-carbaboranyl-substituted derivatives lacked COX inhibitory activity, an ortho-carbaboranyl analogue was active, but showed a selectivity shift toward COX-1.
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Affiliation(s)
- Markus Laube
- Institut für Radiopharmazie, Helmholtz-Zentrum Dresden-Rossendorf, Bautzner Landstrasse 400, 01328 Dresden, Germany.
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