1
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Fisk M, Popa R. Decorated Vesicles as Prebiont Systems (a Hypothesis). ORIGINS LIFE EVOL B 2023; 53:187-203. [PMID: 38072914 DOI: 10.1007/s11084-023-09643-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Accepted: 11/20/2023] [Indexed: 12/31/2023]
Abstract
Decorated vesicles in deep, seafloor basalts form abiotically, but show at least four life-analogous features, which makes them a candidate for origin of life research. These features are a physical enclosure, carbon-assimilatory catalysts, semi-permeable boundaries, and a source of usable energy. The nanometer-to-micron-sized spherules on the inner walls of decorated vesicles are proposed to function as mineral proto-enzymes. Chemically, these structures resemble synthetic FeS clusters shown to convert CO2, CO and H2 into methane, formate, and acetate. Secondary phyllosilicate minerals line the vesicles' inner walls and can span openings in the vesicles and thus can act as molecular sieves between the vesicles' interior and the surrounding aquifer. Lastly, basalt glass in the vesicle walls takes up protons, which replace cations in the silicate framework. This results in an inward proton flux, reciprocal outward flux of metal cations, more alkaline pH inside the vesicle than outside, and production of more phyllosilicates. Such life-like features could have been exploited to move decorated vesicles toward protolife systems. Decorated vesicles are proposed as study models of prebiotic systems that are expected to have existed on the early Earth and Earth-like exoplanets. Their analysis can lead to better understanding of changes in planetary geocycles during the origin of life.
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Affiliation(s)
- Martin Fisk
- College of Earth, Ocean, and Atmospheric Sciences, Oregon State University, Corvallis, OR, 97330, USA.
| | - Radu Popa
- River Road Research, Tonawanda, NY, 14150, USA
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2
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Spietz RL, Payne D, Boyd ES. Methanogens acquire and bioaccumulate nickel during reductive dissolution of nickelian pyrite. Appl Environ Microbiol 2023; 89:e0099123. [PMID: 37830848 PMCID: PMC10617489 DOI: 10.1128/aem.00991-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Accepted: 08/07/2023] [Indexed: 10/14/2023] Open
Abstract
Nickel (Ni) is a key component of the active site metallocofactors of numerous enzymes required for methanogenesis, including [NiFe]-hydrogenase, carbon monoxide dehydrogenase, and methyl CoM reductase, leading to a high demand for Ni among methanogens. However, methanogens often inhabit euxinic environments that favor the sequestration of nickel as metal-sulfide minerals, such as nickelian pyrite [(Ni,Fe)S2], that have low solubilities and that are not considered bioavailable. Recently, however, several different model methanogens (Methanosarcina barkeri, Methanococcus voltae, Methanococcus maripaludis) were shown to reductively dissolve pyrite (FeS2) and to utilize dissolution products to meet iron and sulfur biosynthetic demands. Here, using M. barkeri Fusaro, and laboratory-synthesized (Ni,Fe)S2 that was physically isolated from cells using dialysis membranes, we show that trace nickel (<20 nM) abiotically solubilized from the mineral can support methanogenesis and limited growth, roughly fivefold less than the minimum concentration known to support methanogenesis. Furthermore, when provided direct contact with (Ni,Fe)S2, M. barkeri promoted the reductive dissolution of (Ni,Fe)S2 and assimilated solubilized nickel, iron, and sulfur as its sole source of these elements. Cells that reductively dissolved (Ni,Fe)S2 bioaccumulated approximately fourfold more nickel than those grown with soluble nickel and sulfide but had similar metabolic coupling efficiencies. While the mechanism for Ni uptake in archaeal methanogens is not known, homologs of the bacterial Nik uptake system were shown to be ubiquitous across methanogen genomes. Collectively, these observations indicate that (Ni,Fe)S2 is bioavailable in anoxic environments and that methanogens can convert this mineral into nickel-, iron-, and sulfur-containing metalloenzymes to support methanogenesis and growth. IMPORTANCE Nickel is an essential metal, and its availability has changed dramatically over Earth history due to shifts in the predominant type of volcanism in the late Archean that limited its availability and an increase in euxinic conditions in the early Proterozoic that favored its precipitation as nickel sulfide minerals. Observations presented herein indicate that the methanogen, Methanosarcina barkeri, can acquire nickel at low concentration (<20 nM) from soluble and mineral sources. Furthermore, M. barkeri was shown to actively reduce nickelian pyrite; use dissolution products to meet their iron, sulfur, and nickel demands; and bioaccumulate nickel. These data help to explain how M. barkeri (and possibly other methanogens and anaerobes) can acquire nickel in contemporary and past anoxic or euxinic environments.
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Affiliation(s)
- Rachel L. Spietz
- Department of Microbiology and Cell Biology, Montana State University, Bozeman, Montana, USA
| | - Devon Payne
- Department of Microbiology and Cell Biology, Montana State University, Bozeman, Montana, USA
| | - Eric S. Boyd
- Department of Microbiology and Cell Biology, Montana State University, Bozeman, Montana, USA
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3
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Park M, Lee KS, Ryu J, Song YS, Jeong HY. Investigation of Cd(II) sorption by mackinawite (FeS) under anoxic conditions. J Anal Sci Technol 2022. [DOI: 10.1186/s40543-022-00359-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Abstract
AbstractMackinawite (FeS) was investigated for cadmium ion (Cd(II)) sorption under anoxic conditions. At the surface loading of Cd(II) (i.e., [Cd(II)]0/[FeS]0) ≤ 5 mmol/g, FeS quantitatively immobilized Cd(II). Adsorption and CdS precipitation were responsible for Cd(II) uptake, with their relative importance depending on [Cd(II)]0/[FeS]0. At pH 5.5–6.0, adsorption was more important when [Cd(II)]0/[FeS]0 ≤ 0.05 mmol/g. According to energy dispersive X-ray spectroscopy, Cd(II) exhibited strong spatial correlations with S and Cl. While Cd-S correlations corresponded to CdS precipitation and/or the surface complexation of Cd(II) with sulfhydryl functional sites, Cd–Cl correlations indicated the presence of chloride-complexed Cd(II). Given the strong correlations of both pairs, the adsorbed Cd(II) was likely present in chlorosulfide forms (e.g., ≡FeS–Cd(II)–Cl). When [Cd(II)]0/[FeS]0 exceeded 0.05 mmol/g, CdS precipitation became more important. X-ray diffraction, transmission electron microscopy, and selected area electron diffraction revealed the formation of hawleyite (cubic CdS) at higher surface loadings. The Fe(II) species liberated during CdS precipitation were resorbed through adsorption at acidic pH and the formation of Fe (oxyhydr)oxides at neutral to basic pH. Given the greater stability of CdS than adsorbed Cd(II), the prevalence of the former suggests that FeS can serve as an effective reagent to remedy Cd(II) contamination under anoxic conditions. Due to its ubiquitous presence, FeS may also control the environmental fate and mobility of Cd(II) in sulfidic sediments.
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4
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Engel M, Noël V, Kukkadapu RK, Boye K, Bargar JR, Fendorf S. Nitrate Controls on the Extent and Type of Metal Retention in Fine-Grained Sediments of a Simulated Aquifer. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022; 56:14452-14461. [PMID: 36206030 DOI: 10.1021/acs.est.2c03403] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Aquifer groundwater quality is largely controlled by sediment composition and physical heterogeneity, which commonly sustains a unique redox gradient pattern. Attenuation of heavy metals within these heterogeneous aquifers is reliant on multiple factors, including redox conditions and redox-active species that can further influence biogeochemical cycling. Here, we simulated an alluvial aquifer system using columns filled with natural coarse-grained sediments and two domains of fine-grained sediment lenses. Our goal was to examine heavy metal (Ni and Zn) attenuation within a complex aquifer network and further explore nitrate-rich groundwater conditions. The fine-grained sediment lenses sustained reducing conditions and served as a sink for Ni sequestration─in the form of Ni-silicates, Ni-organic matter, and a dominant Ni-sulfide phase. The silicate clay and sulfide pools were also important retention mechanisms for Zn; however, Ni was associated more extensively with organic matter compared to Zn, which formed layered double hydroxides. Nitrate-rich conditions promoted denitrification within the lenses that was coupled to the oxidation of Fe(II) and the concomitant precipitation of an Fe(III) phase with higher structural distortion. A decreased metal sulfide pool also resulted, where nitrate-rich conditions generated an average 20% decrease in solid-phase Ni, Zn, and Fe. Ultimately, nitrate plays a significant role in the aquifer's biogeochemical cycling and the capacity to retain heavy metals.
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Affiliation(s)
- Maya Engel
- Department of Earth System Science, Stanford University, Stanford, California 94305, United States
- Geochemistry and Biogeochemistry Group, SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Vincent Noël
- Geochemistry and Biogeochemistry Group, SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Ravi K Kukkadapu
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington, 99354, United States
| | - Kristin Boye
- Geochemistry and Biogeochemistry Group, SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - John R Bargar
- Geochemistry and Biogeochemistry Group, SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Scott Fendorf
- Department of Earth System Science, Stanford University, Stanford, California 94305, United States
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5
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Altair T, Galante D, Varela H. Voltammetric investigation on iron-(nickel-)sulfur surface under conditions for the emergence of life. IOP SCINOTES 2022. [DOI: 10.1088/2633-1357/ac79e7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Abstract
Iron (II) sulfide minerals have gained attention in the last decades due to their relevance in hypotheses for the emergence of life on the early Earth around 4 billion years ago. In the submarine vent theory, it has been proposed that those minerals, especially mackinawite, had a key role in prebiotic processes. Those are estimated to be present in a natural electrochemical setting, analogous to a chemiosmotic one, formed in the interface between the early ocean and the interior of the alkaline hydrothermal systems, the early vent-ocean interface. To evaluate this and other hypotheses, voltammetric studies were performed to better understand the electrochemical behavior of minerals under conditions analogous to the vent-ocean interface. The preliminary results presented here indicate that, in the potential range estimated to exist in that interface, mackinawite can transition to other mineral phases and may posibly coexist with other minerals, resulting from its oxidation. This can create a local chemical diversity. In addition, it has been tested a protocol for Ni incorporation in mackinawite structure, resulting in a surface that showed an interesting behavior in the presence of CO2, although definitive experiments showed necessary for a deeper comprehension of that behavior. Overall, the results are consistent with previous results on electrocatalytical properties of Fe-Ni-S materials for CO2 reduction, and also could lead to the emergence of a protometabolism on early Earth.
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Li D, Sun J, Zhong Y, Zhang H, Wang H, Deng Y, Peng P. A comprehensive evaluation of factors affecting the reactivity of FeS towards hexabromocyclododecane diastereoisomers. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 816:151595. [PMID: 34774933 DOI: 10.1016/j.scitotenv.2021.151595] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2021] [Revised: 11/05/2021] [Accepted: 11/06/2021] [Indexed: 06/13/2023]
Abstract
Reactivity of iron sulfide (FeS) towards hexabromocyclododecane (HBCD) was explored under conditions of varying temperature, pH, inorganic ion and dissolved organic matter (DOM) in this study. Results show that the reduction of HBCD by FeS has an activation energy of 29.2 kJ mol-1, suggesting that the rate-limiting step in the reduction was a surface-mediated reaction. The reduction of HBCD by FeS was a highly pH-dependent process. The optimal rate for HBCD reduction by FeS was observed at a pH of 6.2. All the tested inorganic ions suppressed the reduction of HBCD by FeS. XPS analysis confirmed that both Fe(II)-S and bulk S(-II) on FeS surface could be impacted by solution pH and inorganic ions and were responsible for the regulation of HBCD reduction. Some DOMs (i.e., fulvic acid, humic acid, salicylic acid, catechol and sodium dodecyl sulfate) were found to hinder the reduction via competing with HBCD for active sites on FeS surface. However, the presence of 2,2'-bipyridine, triton X-100 and cetyltrimethyl ammonium bromide was able to significantly enhance the rate of HBCD reduction by 5.8, 9.0 and 20 times, respectively. Different factors could influence the reduction efficiency of HBCD diastereoisomers to different extent, but not the reaction orders of HBCD diastereoisomers (α-HBCD < γ-HBCD < β-HBCD). Moreover, FeS could completely remove HBCD diastereoisomers in sediments with multiple factors within 9 d reaction. Our results contribute to give a better understanding on the performance of FeS towards HBCD under real and complex conditions and facilitate the application of FeS in remediation sites.
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Affiliation(s)
- Dan Li
- School of Environment and Civil Engineering, Dongguan University of Technology, Dongguan 523808, China; State Key Laboratory of Organic Geochemistry, Guangdong Provincial Key Laboratory of Environmental Protection and Resources Utilization, Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Wushan, Guangzhou 510640, China; CAS Center for Excellence in Deep Earth Science, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jieyi Sun
- School of Environment and Civil Engineering, Dongguan University of Technology, Dongguan 523808, China
| | - Yin Zhong
- State Key Laboratory of Organic Geochemistry, Guangdong Provincial Key Laboratory of Environmental Protection and Resources Utilization, Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Wushan, Guangzhou 510640, China; CAS Center for Excellence in Deep Earth Science, Guangzhou 510640, China.
| | - Huanheng Zhang
- Guangzhou Environmental Protection Investment Group Co., Ltd., Guangzhou 510016, China
| | - Heli Wang
- State Key Laboratory of Organic Geochemistry, Guangdong Provincial Key Laboratory of Environmental Protection and Resources Utilization, Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Wushan, Guangzhou 510640, China; CAS Center for Excellence in Deep Earth Science, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yirong Deng
- State Key Laboratory of Organic Geochemistry, Guangdong Provincial Key Laboratory of Environmental Protection and Resources Utilization, Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Wushan, Guangzhou 510640, China; CAS Center for Excellence in Deep Earth Science, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100049, China; Guangdong Key Laboratory of Contaminated Sites Environmental Management and Remediation, Guangdong Provincial Academy of Environmental Science, Guangzhou 510045, China
| | - Ping'an Peng
- State Key Laboratory of Organic Geochemistry, Guangdong Provincial Key Laboratory of Environmental Protection and Resources Utilization, Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Wushan, Guangzhou 510640, China; CAS Center for Excellence in Deep Earth Science, Guangzhou 510640, China
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7
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Bolney R, Grosch M, Winkler M, van Slageren J, Weigand W, Robl C. Mackinawite formation from elemental iron and sulfur. RSC Adv 2021; 11:32464-32475. [PMID: 35495494 PMCID: PMC9041996 DOI: 10.1039/d1ra03705f] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2021] [Accepted: 09/19/2021] [Indexed: 01/28/2023] Open
Abstract
Sulfur-assisted corrosion is a process known to material scientists for many decades now. Though the corrosion of iron in the presence of sulfur has been studied extensively, it has never been used to intentionally synthesize mackinawite. In contrast to the conventional preparation of mackinawite by precipitation, the synthesis from the elements can be carried out without additional ions. This makes it possible to investigate the influence of any dissolved salts on the mackinawite formation and its properties. We found that the addition of NaCl significantly accelerates the reaction and furthermore influences the Fe2+ ion content of the formed mackinawite itself. This finding leads us to propose a novel model of charged layers which can be used to explain some of the inconsistencies found in the literature regarding the structure and particle characteristics of nano-mackinawite. Nanoparticulate mackinawite was synthesized from elemental iron and sulfur in a convenient and reliable reaction. The structure and composition of the products were characterized and a new model describing the particle characteristics is established.![]()
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Affiliation(s)
- Robert Bolney
- Faculty of Chemistry and Earth Sciences, Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller-University Humboldtstrasse 8 07743 Jena Germany +49 3641 9-48160
| | - Mario Grosch
- Faculty of Chemistry and Earth Sciences, Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller-University Humboldtstrasse 8 07743 Jena Germany +49 3641 9-48160
| | - Mario Winkler
- Institute for Physical Chemistry, University of Stuttgart Pfaffenwaldring 55 70569 Stuttgart Germany
| | - Joris van Slageren
- Institute for Physical Chemistry, University of Stuttgart Pfaffenwaldring 55 70569 Stuttgart Germany
| | - Wolfgang Weigand
- Faculty of Chemistry and Earth Sciences, Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller-University Humboldtstrasse 8 07743 Jena Germany +49 3641 9-48160
| | - Christian Robl
- Faculty of Chemistry and Earth Sciences, Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller-University Humboldtstrasse 8 07743 Jena Germany +49 3641 9-48160
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8
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Mitchell CE, Santos-Carballal D, Beale AM, Jones W, Morgan DJ, Sankar M, de Leeuw NH. The role of surface oxidation and Fe-Ni synergy in Fe-Ni-S catalysts for CO 2 hydrogenation. Faraday Discuss 2021; 230:30-51. [PMID: 33884381 DOI: 10.1039/d0fd00137f] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Increasing carbon dioxide (CO2) emissions, resulting in climate change, have driven the motivation to achieve the effective and sustainable conversion of CO2 into useful chemicals and fuels. Taking inspiration from biological processes, synthetic iron-nickel-sulfides have been proposed as suitable catalysts for the hydrogenation of CO2. In order to experimentally validate this hypothesis, here we report violarite (Fe,Ni)3S4 as a cheap and economically viable catalyst for the hydrogenation of CO2 into formate under mild, alkaline conditions at 125 °C and 20 bar (CO2 : H2 = 1 : 1). Calcination of violarite at 200 °C resulted in excellent catalytic activity, far superior to that of Fe-only and Ni-only sulfides. We further report first principles simulations of the CO2 conversion on the partially oxidised (001) and (111) surfaces of stoichiometric violarite (FeNi2S4) and polydymite (Ni3S4) to rationalise the experimentally observed trends. We have obtained the thermodynamic and kinetic profiles for the reaction of carbon dioxide (CO2) and water (H2O) on the catalyst surfaces via substitution and dissociation mechanisms. We report that the partially oxidised (111) surface of FeNi2S4 is the best catalyst in the series and that the dissociation mechanism is the most favourable. Our study reveals that the partial oxidation of the FeNi2S4 surface, as well as the synergy of the Fe and Ni ions, are important in the catalytic activity of the material for the effective hydrogenation of CO2 to formate.
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Affiliation(s)
- Claire E Mitchell
- Cardiff Catalysis Institute, School of Chemistry, Cardiff University, Cardiff, CF10 3AT, UK.
| | | | - Andrew M Beale
- Department of Chemistry, University College London, London, WC1H 0AJ, UK and Research Complex at Harwell, Rutherford Appleton Laboratory, Harwell Science & Innovation Campus, Harwell, Didcot, OX11 0FA, UK
| | - Wilm Jones
- Department of Chemistry, University College London, London, WC1H 0AJ, UK and Research Complex at Harwell, Rutherford Appleton Laboratory, Harwell Science & Innovation Campus, Harwell, Didcot, OX11 0FA, UK
| | - David J Morgan
- Cardiff Catalysis Institute, School of Chemistry, Cardiff University, Cardiff, CF10 3AT, UK.
| | | | - Nora H de Leeuw
- Cardiff Catalysis Institute, School of Chemistry, Cardiff University, Cardiff, CF10 3AT, UK. and School of Chemistry, University of Leeds, Leeds, LS2 9JT, UK. and Department of Earth Sciences, Utrecht University, Princetonlaan 8a, 3584 CB Utrecht, The Netherlands
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9
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Abstract
Metal sulphides constitute cheap, naturally abundant, and environmentally friendly materials for energy storage applications and chemistry. In particular, iron (II) monosulphide (FeS, mackinawite) is a material of relevance in theories of the origin of life and for heterogenous catalytic applications in the conversion of carbon dioxide (CO2) towards small organic molecules. In natural mackinawite, Fe is often substituted by other metals, however, little is known about how such substitutions alter the chemical activity of the material. Herein, the effect of Ni doping on the structural, electronic, and catalytic properties of FeS surfaces is explored via dispersion-corrected density functional theory simulations. Substitutional Ni dopants, introduced on the Fe site, are readily incorporated into the pristine matrix of FeS, in good agreement with experimental measurements. The CO2 molecule was found to undergo deactivation and partial desorption from the doped surfaces, mainly at the Ni site when compared to undoped FeS surfaces. This behaviour is attributed to the energetically lowered d-band centre position of the doped surface, as a consequence of the increased number of paired electrons originating from the Ni dopant. The reaction and activation energies of CO2 dissociation atop the doped surfaces were found to be increased when compared to pristine surfaces, thus helping to further elucidate the role Ni could have played in the reactivity of FeS. It is expected that Ni doping in other Fe-sulphides may have a similar effect, limiting the catalytic activity of these phases when this dopant is present at their surfaces.
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10
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Russell MJ, Ponce A. Six 'Must-Have' Minerals for Life's Emergence: Olivine, Pyrrhotite, Bridgmanite, Serpentine, Fougerite and Mackinawite. Life (Basel) 2020; 10:E291. [PMID: 33228029 PMCID: PMC7699418 DOI: 10.3390/life10110291] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2020] [Revised: 11/13/2020] [Accepted: 11/14/2020] [Indexed: 12/25/2022] Open
Abstract
Life cannot emerge on a planet or moon without the appropriate electrochemical disequilibria and the minerals that mediate energy-dissipative processes. Here, it is argued that four minerals, olivine ([Mg>Fe]2SiO4), bridgmanite ([Mg,Fe]SiO3), serpentine ([Mg,Fe,]2-3Si2O5[OH)]4), and pyrrhotite (Fe(1-x)S), are an essential requirement in planetary bodies to produce such disequilibria and, thereby, life. Yet only two minerals, fougerite ([Fe2+6xFe3+6(x-1)O12H2(7-3x)]2+·[(CO2-)·3H2O]2-) and mackinawite (Fe[Ni]S), are vital-comprising precipitate membranes-as initial "free energy" conductors and converters of such disequilibria, i.e., as the initiators of a CO2-reducing metabolism. The fact that wet and rocky bodies in the solar system much smaller than Earth or Venus do not reach the internal pressure (≥23 GPa) requirements in their mantles sufficient for producing bridgmanite and, therefore, are too reduced to stabilize and emit CO2-the staple of life-may explain the apparent absence or negligible concentrations of that gas on these bodies, and thereby serves as a constraint in the search for extraterrestrial life. The astrobiological challenge then is to search for worlds that (i) are large enough to generate internal pressures such as to produce bridgmanite or (ii) boast electron acceptors, including imported CO2, from extraterrestrial sources in their hydrospheres.
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Affiliation(s)
- Michael J. Russell
- Dipartimento di Chimica, Università degli Studi di Torino, via P. Giuria 7, 10125 Turin, Italy
| | - Adrian Ponce
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA 91109, USA;
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11
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Li Q, Zhang Y, Liao Y, Huang J, Dang Z, Guo C. Removal of hexavalent chromium using biogenic mackinawite (FeS)-deposited kaolinite. J Colloid Interface Sci 2020; 572:236-245. [DOI: 10.1016/j.jcis.2020.03.077] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2020] [Revised: 03/16/2020] [Accepted: 03/22/2020] [Indexed: 10/24/2022]
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12
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Mansor M, Cantando E, Wang Y, Hernandez-Viezcas JA, Gardea-Torresdey JL, Hochella MF, Xu J. Insights into the Biogeochemical Cycling of Cobalt: Precipitation and Transformation of Cobalt Sulfide Nanoparticles under Low-Temperature Aqueous Conditions. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2020; 54:5598-5607. [PMID: 32243750 DOI: 10.1021/acs.est.0c01363] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Cobalt sulfide precipitates, key phases in the natural biogeochemistry of cobalt and in relevant remediation and resource recovery processes, are poorly defined under low-temperature aqueous conditions. Here, we systematically studied Co (Fe) sulfides precipitated and aged in environmentally relevant solutions, defined by different combinations of pH, initial cobalt to iron ratios ([Co]aq/[Fe]aq), with/without S0, and the presence/absence of sulfate-reducing bacteria. The initial abiogenic precipitates were composed exclusively of amorphous Co sulfide nanoparticles (CoS·xH2O) that were stable in anoxic solution for 2 months, with estimated log K* values 1-5 orders of magnitude higher than that previously reported for Co sulfides. The addition of S0, in combination with acidic pH and elevated temperature (60 °C), resulted in recrystallization of the amorphous precipitates into nanocrystalline jaipurite (hexagonal CoS) within 1 month. In the presence of Fe(II)aq, the abiogenic precipitates were composed of more crystalline Co sulfides and/or Co-rich mackinawite, the exact phase being dependent on the [Co]aq/[Fe]aq value. The biogenic precipitates displayed higher crystallinity for Co sulfides (up to the formation of nanocrystalline cobalt pentlandite, Co9S8) and lower crystallinity for Co-rich mackinawite, suggestive of mineral-specific bacterial interaction. The revealed precipitation and transformation pathways of Co (Fe) sulfides in this study allows for a better constraint of Co biogeochemistry in various natural and engineered environments.
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Affiliation(s)
- Muammar Mansor
- Department of Geological Sciences, The University of Texas at El Paso, El Paso, Texas 79968, United States
| | - Elizabeth Cantando
- Virginia Tech National Center for Earth and Environmental Nanotechnology (NanoEarth), Blacksburg, Virginia 24061, United States
| | - Yi Wang
- Chemistry & Biochemistry Department, The University of Texas at El Paso, El Paso, Texas 79968, United States
| | - Jose A Hernandez-Viezcas
- Chemistry & Biochemistry Department, The University of Texas at El Paso, El Paso, Texas 79968, United States
- University of California Center for Environmental Implications of Nanotechnology (UC CEIN), The University of Texas at El Paso, El Paso, Texas 79968, United States
| | - Jorge L Gardea-Torresdey
- Chemistry & Biochemistry Department, The University of Texas at El Paso, El Paso, Texas 79968, United States
- University of California Center for Environmental Implications of Nanotechnology (UC CEIN), The University of Texas at El Paso, El Paso, Texas 79968, United States
| | - Michael F Hochella
- Virginia Tech National Center for Earth and Environmental Nanotechnology (NanoEarth), Blacksburg, Virginia 24061, United States
- Energy and Environment Directorate, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Jie Xu
- Department of Geological Sciences, The University of Texas at El Paso, El Paso, Texas 79968, United States
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13
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Vessey CJ, Lindsay MBJ. Aqueous Vanadate Removal by Iron(II)-Bearing Phases under Anoxic Conditions. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2020; 54:4006-4015. [PMID: 32142601 DOI: 10.1021/acs.est.9b06250] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Vanadium contamination is a growing environmental hazard worldwide. Aqueous vanadate (HxVVO4(3-x)-(aq)) concentrations are often controlled by surface complexation with metal (oxyhydr)oxides in oxic environments. However, the geochemical behavior of this toxic redox-sensitive oxyanion in anoxic environments is poorly constrained. Here, we describe results of batch experiments to determine kinetics and mechanisms of aqueous H2VVO4- (100 μM) removal under anoxic conditions in suspensions (2.0 g L-1) of magnetite, siderite, pyrite, and mackinawite. We present results of parallel experiments using ferrihydrite (2.0 g L-1) and Fe2+(aq) (200 μM) for comparison. Siderite and mackinawite reached near complete removal (46 μmol g-1) of aqueous vanadate after 3 h and rates were generally consistent with ferrihydrite, whereas magnetite removed 18 μmol g-1 of aqueous vanadate after 48 h and uptake by pyrite was limited. Removal during reaction with Fe2+(aq) was observed after 8 h, concomitant with precipitation of secondary Fe phases. X-ray absorption spectroscopy revealed V(V) reduction to V(IV) and formation of bidentate corner-sharing surface complexes on magnetite and siderite, and with Fe2+(aq) reaction products. These data also suggest that V(IV) is incorporated into the mackinawite structure. Overall, we demonstrate that Fe(II)-bearing phases can promote aqueous vanadate attenuation and, therefore, limit dissolved V concentrations in anoxic environments.
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Affiliation(s)
- Colton J Vessey
- Department of Geological Sciences, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5E2, Canada
| | - Matthew B J Lindsay
- Department of Geological Sciences, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5E2, Canada
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Merrot P, Juillot F, Noël V, Lefebvre P, Brest J, Menguy N, Guigner JM, Blondeau M, Viollier E, Fernandez JM, Moreton B, Bargar JR, Morin G. Nickel and iron partitioning between clay minerals, Fe-oxides and Fe-sulfides in lagoon sediments from New Caledonia. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 689:1212-1227. [PMID: 31466160 DOI: 10.1016/j.scitotenv.2019.06.274] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2019] [Revised: 06/16/2019] [Accepted: 06/17/2019] [Indexed: 06/10/2023]
Abstract
In the tropics, continental weathering and erosion are major sources of trace metals towards estuaries and lagoons, where early diagenesis of sediments may influence their mobility and bioavailability. Determining trace metals speciation in tropical sedimentary settings is thus needed to assess their long-term fate and potential threat to fragile coastal ecosystems. In this study, we determined Fe, Ni and S speciation across a shore-to-reef gradient in sediments from the New Caledonia lagoon that receive mixed contribution from lateritic (iron-oxyhydroxides and clay minerals), volcano-sedimentary (silicates) and marine (carbonate) sources. Sulfur K-edge XANES data indicated a major contribution of pyrite (FeS2) to S speciation close to the shore. However, this contribution was found to dramatically decrease across the shore-to-reef gradient, S mainly occurring as sulfate close to the coral reef. In contrast, Fe and Ni K-edge XANES and EXAFS data indicated a minor contribution of pyrite to Fe and Ni speciation, and this contribution could be evidenced only close to the shore. The major fractions of Fe and Ni across the shore-to-reef gradient were found to occur as Ni- and Fe-bearing clay minerals consisting of smectite (~nontronite), glauconite and two types of serpentines (chrysotile and greenalite/berthierine). Among these clay minerals, greenalite/berthierine, glauconite and possibly smectite, were considered as authigenic. The low contribution of pyrite to trace metals speciation compared to clay minerals is interpreted as a result of (1) a reduced formation rate due to the low amounts of organic carbon compared to the Fe pool and (2) repeated re-oxidation events upon re-suspension of the sediments top layers due to the specific context of shallow lagoon waters. This study thus suggests that green clay authigenesis could represent a key process in the biogeochemical cycling of trace metals that are delivered to lagoon ecosystems upon continental erosion and weathering.
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Affiliation(s)
- Pauline Merrot
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), UMR 7590 CNRS-SU-IRD-MNHN, Sorbonne Université, case 115, 4 place Jussieu, 75252 Paris Cedex 5, France
| | - Farid Juillot
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), UMR 7590 CNRS-SU-IRD-MNHN, Sorbonne Université, case 115, 4 place Jussieu, 75252 Paris Cedex 5, France; Institut de Recherche pour le développement (IRD), UMR 206/UMR 7590 IMPMC, 98848 Nouméa, New Caledonia.
| | - Vincent Noël
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, MS 69, Menlo Park, CA 94025, USA
| | - Pierre Lefebvre
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), UMR 7590 CNRS-SU-IRD-MNHN, Sorbonne Université, case 115, 4 place Jussieu, 75252 Paris Cedex 5, France
| | - Jessica Brest
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), UMR 7590 CNRS-SU-IRD-MNHN, Sorbonne Université, case 115, 4 place Jussieu, 75252 Paris Cedex 5, France
| | - Nicolas Menguy
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), UMR 7590 CNRS-SU-IRD-MNHN, Sorbonne Université, case 115, 4 place Jussieu, 75252 Paris Cedex 5, France
| | - Jean-Michel Guigner
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), UMR 7590 CNRS-SU-IRD-MNHN, Sorbonne Université, case 115, 4 place Jussieu, 75252 Paris Cedex 5, France
| | - Marine Blondeau
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), UMR 7590 CNRS-SU-IRD-MNHN, Sorbonne Université, case 115, 4 place Jussieu, 75252 Paris Cedex 5, France
| | - Eric Viollier
- Institut de Physique du Globe de Paris (IPGP), Sorbonne Paris Cité, Univ Paris Diderot, CNRS, F-75005 Paris, France
| | | | - Benjamin Moreton
- Analytical Environmental Laboratory (AEL), 98800 Nouméa, New Caledonia
| | - John R Bargar
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, MS 69, Menlo Park, CA 94025, USA
| | - Guillaume Morin
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), UMR 7590 CNRS-SU-IRD-MNHN, Sorbonne Université, case 115, 4 place Jussieu, 75252 Paris Cedex 5, France
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Immobilization of Lead and Nickel Ions from Polluted Yam Peels Biomass Using Cement-Based Solidification/Stabilization Technique. INTERNATIONAL JOURNAL OF CHEMICAL ENGINEERING 2019. [DOI: 10.1155/2019/5413960] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Nowadays, biomass has been employed to prepare biosorbents for heavy metals uptake; however, further disposal of polluted material has limited its application. In this work, nickel and lead removal was performed using yam peels and the resulting polluted biomass was mixed with concrete to produce bricks. The biomass was characterized by FT-IR analysis for testing functional groups diversification before and after adsorption process. The effect of adsorbent dosage, temperature, and initial solution concentration was evaluated to select suitable values of these parameters. Adsorption results were adjusted to kinetic and isotherm models to determine adsorption mechanism. Desorption experiments were also performed to determine the appropriate desorbing agent as well as its concentration. Immobilization technique of cement-based solidification/stabilization was applied and the polluted biomass was incorporated to concrete bricks at 5 and 10%. Mechanical resistance and leaching tests were carried out to analyze the suitability of heavy metals immobilization. The suitable values for dosage, temperature, and initial solution concentration were 0.5 g/L, 40°C and 100 ppm, respectively. The kinetic model that best fitted experimental results was pseudo-second order indicating a dominant physicochemical interaction between the two phases. The highest desorption yields were found in 52.47 and 74.84% for nickel and lead ions. The concrete bricks exhibited compression resistance above 5 MPa and all the leachate reported concentrations below the environmental limit. These results suggested that nickel and lead immobilization using concrete bricks is a good alternative to meet disposal problems of contaminated biomass.
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Russell MJ. Green Rust: The Simple Organizing 'Seed' of All Life? Life (Basel) 2018; 8:E35. [PMID: 30150570 PMCID: PMC6161180 DOI: 10.3390/life8030035] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2018] [Revised: 06/28/2018] [Accepted: 08/14/2018] [Indexed: 01/18/2023] Open
Abstract
Korenaga and coworkers presented evidence to suggest that the Earth's mantle was dry and water filled the ocean to twice its present volume 4.3 billion years ago. Carbon dioxide was constantly exhaled during the mafic to ultramafic volcanic activity associated with magmatic plumes that produced the thick, dense, and relatively stable oceanic crust. In that setting, two distinct and major types of sub-marine hydrothermal vents were active: ~400 °C acidic springs, whose effluents bore vast quantities of iron into the ocean, and ~120 °C, highly alkaline, and reduced vents exhaling from the cooler, serpentinizing crust some distance from the heads of the plumes. When encountering the alkaline effluents, the iron from the plume head vents precipitated out, forming mounds likely surrounded by voluminous exhalative deposits similar to the banded iron formations known from the Archean. These mounds and the surrounding sediments, comprised micro or nano-crysts of the variable valence FeII/FeIII oxyhydroxide known as green rust. The precipitation of green rust, along with subsidiary iron sulfides and minor concentrations of nickel, cobalt, and molybdenum in the environment at the alkaline springs, may have established both the key bio-syntonic disequilibria and the means to properly make use of them-the elements needed to effect the essential inanimate-to-animate transitions that launched life. Specifically, in the submarine alkaline vent model for the emergence of life, it is first suggested that the redox-flexible green rust micro- and nano-crysts spontaneously precipitated to form barriers to the complete mixing of carbonic ocean and alkaline hydrothermal fluids. These barriers created and maintained steep ionic disequilibria. Second, the hydrous interlayers of green rust acted as engines that were powered by those ionic disequilibria and drove essential endergonic reactions. There, aided by sulfides and trace elements acting as catalytic promoters and electron transfer agents, nitrate could be reduced to ammonia and carbon dioxide to formate, while methane may have been oxidized to methyl and formyl groups. Acetate and higher carboxylic acids could then have been produced from these C1 molecules and aminated to amino acids, and thence oligomerized to offer peptide nests to phosphate and iron sulfides, and secreted to form primitive amyloid-bounded structures, leading conceivably to protocells.
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Affiliation(s)
- Michael J Russell
- Planetary Chemistry and Astrobiology, Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA 91109-8099, USA.
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Russell MJ, Nitschke W. Methane: Fuel or Exhaust at the Emergence of Life? ASTROBIOLOGY 2017; 17:1053-1066. [PMID: 28949766 PMCID: PMC5655419 DOI: 10.1089/ast.2016.1599] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2016] [Accepted: 03/20/2017] [Indexed: 05/28/2023]
Abstract
As many of the methanogens first encountered at hydrothermal vents were thermophilic to hyperthermophilic and comprised one of the lower roots of the evolutionary tree, it has been assumed that methanogenesis was one of the earliest, if not the earliest, pathway to life. It being well known that hydrothermal springs associated with serpentinization also bore abiotic methane, it had been further assumed that emergent biochemistry merely adopted and quickened this supposed serpentinization reaction. Yet, recent hydrothermal experiments simulating serpentinization have failed to generate methane so far, thus casting doubt on this assumption. The idea that the inverse view is worthy of debate, that is, that methanotrophy was the earlier, is stymied by the "fact" that methanotrophy itself has been termed "reverse methanogenesis," so allotting the methanogens the founding pedigree. Thus, attempting to suggest instead that methanogenesis might be termed reverse methanotrophy would require "unlearning"-a challenge to the subconscious! Here we re-examine the "impossibility" of methanotrophy predating methanogenesis as in what we have termed the "denitrifying methanotrophic acetogenic pathway." Advantages offered by such thinking are that methane would not only be a fuel but also a ready source of reduced carbon to combine with formate or carbon monoxide-available in hydrothermal fluids-to generate acetate, a target molecule of the first autotrophs. And the nitrate/nitrite required for the putative oxidation of methane with activated NO would also be a ready source of fixed nitrogen for amination reactions. Theoretical conditions for such a putative pathway would be met in a hydrothermal green rust-bearing exhalative pile and associated chimneys subject to proton and electron counter gradients. This hypothesis could be put to test in a high-pressure hydrothermal reaction chamber in which a cool carbonate/nitrate/nitrite-bearing early acidulous ocean simulant is juxtaposed across a precipitate membrane to an alkaline solution of hydrogen and methane. Key Words: Green rust-Methanotrophy-Nitrate reduction-Emergence of life. Astrobiology 17, 1053-1066.
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Affiliation(s)
- Michael J. Russell
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Wolfgang Nitschke
- CNRS/Aix-Marseille University, BIP UMR 7281, IMM FR 3479, Marseille, France
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