Human health risk of vanadium in farmland soils near various vanadium ore mining areas and bioremediation assessment

Subterranean marvels: microbial communities in caves and underground mines and their promise for natural product discovery

Covering: 2014 to 2024Since the dawn of human history, caves have played an intimate role in our existence. From our earliest ancestors seeking shelter from the elements to more recent generations harnessing cave substances for medicinal purposes, caves have served as essential resources and havens. The last 40 years of geomicrobiology research has replaced the outdated perception of subterranean environments as lifeless and unchanging with the realization that vibrant microbial communities have adapted to thrive in extreme conditions over millions of years. The ability of subterranean microbial communities to withstand nutrient deprivation and darkness creates a unique reservoir of untapped biosynthetic potential. These communities offer exciting prospects for medicine (e.g., antimicrobial and antitumor therapies) and biotechnology (e.g., redox chemical properties and biomineralization). This article highlights the significance of caves and mines as reservoirs of microbial diversity, the potential impact of their bioactive compounds on the fields of healthcare and biotechnology, and the significant challenges that must be overcome to access and harness the biotechnological potential of subterranean microbial communities. Additionally, it emphasizes the conservation efforts needed to protect these delicate ecosystems, ensuring the preservation of both ancient traditions and tomorrow's medicines.

The induction of polyamines metabolism pathway and membrane stability with silicon alleviate the vanadium toxicity in pepper plants

The vanadium (V) toxicity predominantly is the primary limitation in restraining pepper growth. The silicon (Si) in pepper plants induced the transcript level of the polyamines metabolism pathway genes, including the arginase (CbARG), ornithine decarboxylase (CbODC), arginine decarboxylase (CbADC), N-carbamoylputrescine amidase (CbNCA), Spermidine synthase (CbSPDS), copper binding diamine oxidase (CbCuAO) to overcome the V toxicity. The polyamines, including the Spm, Spd, and Put, induced with Si about 41.37 %, 33.12 %, and 27.90 %, respectively, in V stress. Moreover, the Si application decline in the leaf and root V contents, which was around 49.5 % and 40.74 %, respectively, then the V stress plants. The soluble protein, proline, and Si level in root/leaf with Si treatment significantly induced around 55.55/50.22 %, 42.85/55.35 %, and 49.92/85.29 %, respectively, as compared to the V stress. Si also heightened the nitrate reductase (NR), phosphoenolpyruvate carboxylase (PEPC), and malate dehydrogenase (MDH) levels. Our study revealed that Si maintained the PSII integrity and induced PSII efficiency genes. Si preserves the membrane stability, as evidenced by less accumulation in EL, H2O2, and MDA levels. The Si also induces the AsA-GSH to eliminate the reactive oxygen species (ROS) in the pepper plants. In summary, our research elucidated that Si addition improved pepper plants' tolerance to V toxicity.

Cooperative application of transcriptomics and ceRNA hypothesis: lncRNA-00742/miR-116 targets CD74 to mediate vanadium-induced mitochondrial apoptosis in duck liver

Vanadium (V) is a poisonous metallic environmental pollutant which poses hazard to the animal health of the liver. Competitive endogenous ribonucleic acids (ceRNAs) are essential elements of mitochondrial function and apoptosis, and their effects have been associated with the metal toxicity mechanism. However, the specific mechanism of ceRNAs in V-induced mitochondrial apoptosis in the liver has not been adequately investigated. Hence, we established an in vivo model of ducks exposed to V for 44 days and an in vitro model of V exposure duck hepatocyte knockdown/overexpression. Results showed that V exposure triggered the differential expression of 1106 lncRNAs and 11 miRNAs in the liver. Besides, we established the lncRNA-00742/miR-116/CD74 regulatory network by the dual luciferase reporter gene. Our results also found that V induced mitochondrial injury and up-regulated the expression levels of mitochondrial apoptosis-related factors. Furthermore, knockdown of miR-116 attenuated V-induced mitochondrial injury and apoptosis in hepatocytes. In contrast, overexpression of miR-116 and knockdown of CD74 exacerbated mitochondrial injury and apoptosis. BTZO-1 upregulated the CD74 level and alleviated V-induced mitochondrial apoptosis. In summary, V induced mitochondrial damage and apoptosis in duck liver by activating the lncRNA-00742/miR-116/CD74 axis. This research firstly revealed the mechanism of lncRNA-related ceRNAs regulating V-induced mitochondrial apoptosis.

Single nucleus RNA sequencing reveals cellular and molecular responses to vanadium exposure in duck kidneys

Vanadium (V) exposure is known to induce renal toxicity, yet its specific effects on renal cell types and molecular mechanisms remain incompletely understood. We used single nucleus RNA sequencing (snRNA-seq) to characterize the impact of V on duck kidney cells at a cellular resolution. Following a 44-day exposure, immunofluorescence analysis revealed a significant increase in α-SMC expression in the renal interstitium, indicative of fibrotic response. SnRNA-seq identified 12 major cell types organized into 19 clusters within the kidney. Significant changes in cell composition were observed, notably an increase in proximal tubule cells (PT2 subtype), glomerular endothelial cells, principal cells, and alterations in immune cell proportions, while collecting duct intercalated cells (CD-IC) and thick ascending limb showed decreased percentages. Differential gene expression analysis highlighted pathways implicated in V toxicity across different cell types. Changes in drug metabolism-cytochrome P450, butanoate metabolism, and actin cytoskeleton regulation were exhibited by PT cells. Alterations in collecting duct secretion, oxidative phosphorylation, and bicarbonate reclamation pathways were shown in CD-IC cells. Furthermore, immune cells displayed changes in T cell receptor and chemokine signaling pathways, indicative of altered immune responses. Taken together, these findings contribute to a better shedding light on the pathogenic mechanisms of V induced renal injury.

Determination of the Suitable Biomonitors to be used in Monitoring the Change for Reducing the Concentration of V in Areas with High-Level of Air Pollution

In this study, Vanadium (V) concentrations were analyzed in five tree species (Pinus pinaster, Cupressus arizonica, Picea orientalis, Cedrus atlantica, and Pseudotsuga menziesii) from Duzce city (Turkey), a highly polluted area. The research compared V levels across species, organs, directions, and age groups over the past 40 years. Trees, which absorb nutrients from soil and air, were used as biomonitors. Cupressus arizonica and Cedrus atlantica emerged as effective for V mitigation due to high wood accumulation. Significant inter- and intra-species variations in V concentrations were noted, underscoring their potential as V indicators. Annual rings from older trees offer a long-term monitoring method. This study highlights the importance of species-specific selection for monitoring heavy metals and the role of wood in preventing reintroduction of metals into ecosystems. It enhances our understanding of V dynamics and the environmental monitoring potential of these species.

The impact of kaolin mining activities on bacterial diversity and community structure in the rhizosphere soil of three local plants

Introduction

Thus far, the impact of kaolin mining activities on the surrounding native plants and rhizosphere microecology has not been fully understood.

Methods

In this study, we used 16S rRNA high-throughput sequencing to examine the impact of kaolin mining on the rhizosphere bacterial communities and functions of three local plant species: Conyza bonariensis, Artemisia annua, and Dodonaea viscosa.

Results

The results showed that kaolin mining significantly reduced the diversity of rhizosphere bacteria in these plants, as indicated by the Shannon, Simpson, Chao1, and observed species indices (p < 0.05). Kaolin mining had an impact on the recruitment of three rhizosphere bacteria native to the area: Actinoplanes, RB41, and Mycobacterium. These bacteria were found to be more abundant in the rhizosphere soil of three local plants than in bulk soil, yet the mining of kaolin caused a decrease in their abundance (p < 0.05). Interestingly, Ralstonia was enriched in the rhizosphere of these plants found in kaolin mining areas, suggesting its resilience to environmental stress. Furthermore, the three plants had different dominant rhizosphere bacterial populations in kaolin mining areas, such as Nocardioides, Pseudarthrobacter, and Sphingomonas, likely due to the unique microecology of the plant rhizosphere. Kaolin mining activities also caused a shift in the functional diversity of rhizosphere bacteria in the three local plants, with each plant displaying different functions to cope with kaolin mining-induced stress, such as increased abundance of the GlpM family and glucan-binding domain.

Discussion

This study is the first to investigate the effects of kaolin mining on the rhizosphere microecology of local plants, thus contributing to the establishment of soil microecological health monitoring indicators to better control soil pollution in kaolin mining areas.

High-throughput Sequencing Analysis of the Effects of Vanadium on Bacterial Community Structure in Purple Soil

Vanadium (V) contamination in soil has received extensive attention due to its high toxicity. The change of mobility and bioavailability of soil V and the effects of V on the soil microbial community were studied under conditions of different V(V) spiking concentrations (0, 100, 250, and 500 mg kg-1) and aging time (1, 7, 14, 30, 45, and 60 d). The results showed that soil V mainly presented as V(IV) of all treatments throughout the aging process. At high levels of V(V) loading (250 and 500 mg kg-1), soil V(V) showed a downward trend, while bioavailable V did not change significantly within 60 d's aging. The analysis of soil bacterial community showed that Proteobacteria was the most abundant phylum in all soils, and the dominant genera Sphingomonas and Lysobacter can well adapt to high concentration V. These microorganisms exhibited great potential for bioremediation of V-contaminated soils.

Isolation and Identification of Mercury-Tolerant Bacteria LBA119 from Molybdenum-Lead Mining Soils and Their Removal of Hg2

AIMS

To screen heavy metal-tolerant strains from heavy metal-contaminated soil in mining areas and determine the tolerance of the strains to different heavy metals and their removal rates through experiments.

METHODS

Mercury-resistant strain LBA119 was isolated from mercury-contaminated soil samples in Luanchuan County, Henan Province, China. The strain was identified by Gram staining, physiological and biochemical tests, and 16S rDNA sequences. The LBA119 strain showed good resistance and removal rates to heavy metals such as Pb²⁺, Hg²⁺, Mn²⁺, Zn²⁺, and Cd²⁺ using tolerance tests under optimal growth conditions. The mercury-resistant strain LBA119 was applied to mercury-contaminated soil to determine the ability of the strain to remove mercury from the soil compared to mercury-contaminated soil without bacterial biomass.

RESULTS

Mercury-resistant strain LBA119 is a Gram-positive bacterium that appears as a short rod under scanning electron microscopy, with a single bacterium measuring approximately 0.8 × 1.3 μm. The strain was identified as a Bacillus by Gram staining, physiological and biochemical tests, and 16S rDNA sequence analysis. The strain was highly resistant to mercury, with a minimum inhibitory concentration (MIC) of 32 mg/L for mercury. Under a 10 mg/L mercury environment, the optimal inoculation amount, pH, temperature, and salt concentration of the LBA119 strain were 2%, 7, 30 °C, and 20 g/L, respectively. In the 10 mg/L Hg²⁺ LB medium, the total removal rate, volatilization rate, and adsorption rate at 36 h were 97.32%, 89.08%, and 8.24%, respectively. According to tolerance tests, the strain showed good resistance to Pb²⁺, Mn²⁺, Zn²⁺, Cd²⁺, and other heavy metals. When the initial mercury concentration was 50 mg/L and 100 mg/L, compared with the mercury-contaminated soil that contained an LB medium without bacterial biomass, LBA119 inoculation increased 15.54-37.67% after 30 days of culture.

CONCLUSION

This strain shows high bioremediation potential for mercury-contaminated soil.

Photo-induced reduction of vanadium in vanadium-containing iron/manganese oxide agglomerates by oxalic acid

The stockpiling of vanadium-containing tailings allows vanadium to migrate into the surrounding area, resulting in toxic metal contamination. By using the vanadium-bearing iron/manganese (Fe/Mn) oxide agglomerates as the simulated tailings, the feasibility of photo-induced reduction of vanadium by oxalic acid was investigated. Batch effects of the available light and the reducing agents on agglomerates were investigated. Results showed that oxalic acid (5 mmol L^-1) can convert V(V) to V(IV) and convert Fe(III) released from the Fe/Mn oxide agglomerates to Fe(II) under both light and dark conditions. After 45 d of reaction in the dark, oxalic acid converted 33.54% Fe(III) and 100% V(V) in the leachate into Fe(II) and V(IV). The Fenton reaction occurred by light irradiation significantly increased the redox potential in the solution, and also caused V(IV) to be oxidized. Overall, oxalic acid can rapidly reduce V(V) to V(IV), but sunlight may have an inhibitory effect on the reduction reaction. Present study can deepen the understanding of the mechanism for valence transformation of elements in minerals by sunlight, and can help in implementing tailings treatment and environmental remediation by using oxalic acid and avoiding light.

Risk assessment and microbial community structure in agricultural soils contaminated by vanadium from stone coal mining

High health risks of vanadium (V) released by the mining of vanadium titanomagnetite (VTM) have been widely recognized, but little is known about the risks and microbial community responses of V pollution as a consequence of the stone coal mining (SCM), another important resource for V mining. In this study, the topsoils and the profile soils were collected from the agricultural soils around a typical SCM in Hunan Province, China, with the investigation of ecological, health risks and microbial community structures. The results showed that ∼97.6% of sampling sites had levels of total V exceeding the Chinese National standard (i.e., 130 mg/kg), and up to 41.1% of V speciation in the topsoils was pentavalent vanadium (V(V)). Meanwhile, the proportions of HQ > 1 and 0.6-1 in the topsoils were ∼8.3% and ∼31.0% respectively, indicating that V might pose a non-carcinogenic risk to children. In addition, the microbial community varied between the topsoils and the profile soils. Both sulfur-oxidizing bacteria (e.g. Thiobacillus, MND1, Ignavibacterium) and sulfate-reducing bacteria (e.g. Desulfatiglans, GOUTB8, GOUTA6) might have been involved in V(V) reductive detoxification. This study helps better understand the pollution and associated risks of V in the soils of SCM and provides a potential strategy for bioremediation of the V-contaminated environment.

Heavy metal pollution in a black shale post-mining site of southern China: Pollution pattern, source apportionment and health risk assessment

Source apportionment is critical but remains largely unknown for heavy metals in the soil surrounding black shale mining areas. Herein, the distribution, potential hazards, and sources of heavy metals in the soil around a black shale post-mining site were investigated. The content of Cadmium (Cd) in topsoil samples (0.77-50.29 mg/kg, N = 84) all exceeded the Chinese agricultural soil standard (0.3 mg/kg). The majority of Cd in the soil existed in the mobile fraction posing a high potential risk to the local ecosystem. and Zn and V in soils existed in the residual form. The percentages of HQing > 1 and 0.6-1 for Vanadium (V) in soil were 8.3% and 31.0%, respectively, and the percentages of HQing > 0.5 for Cd in soil were 3.7% showed that V and Cd were the main factors that increased the potential non-cancer risk. Five potential sources were identified using the geostatistical and positive matrix factorization (PMF) model, among which Cd was mainly derived from the short-term weathering process of black shale (81.06%), most Zinc (Zn) was from the long-term weathering of black shale (67.35%), whereas V was contributed by many factors including long-term weathering of black shale (42.99%), traffic emissions (31.12%) and agricultural activities (21.05%). This study reveals the potential risk and identifies the sources of heavy metals, which is helpful to manage the contaminated soil in black shale mining areas.

Contrasted speciation distribution of toxic metal(loid)s and microbial community structure in vanadium-titanium magnetite tailings under dry and wet disposal methods

Tailing disposal technologies such as dry and wet disposal methods have a profound effect on the ecosystem of mining areas. However, the chemical speciation of metal(loid)s and microbial community structure in tailings under different disposal methods are still poorly understood. Here we compared the bioavailable fraction of metal(loid)s and the microbial community in vanadium-titanium (V-Ti) magnetite tailing profiles derived from dry and wet stockpiled methods. In wet tailings, the bioavailability of Cr, Cu, Mn, Ni, V, and Zn was higher than that in dry tailings as identified by BCR sequential extraction. Especially for Cu and Ni, the oxidizable fraction was the predominant fraction except the residual fraction, accounting for 37.2-59.0% and 23.2-36.6% of the total concentration in wet tailings, respectively. Based on 16 S rRNA high-throughput sequencing, totally 12 indicator bacterial taxa were detected in dry tailings against 68 in wet tailings. As the biomarkers in wet tailings, genera Sulfuricurvum, Geobacter, and Pseudomonas were expected to be applied to the transformation of metal(loid)s in the tailings. Our results emphasize the importance of dehydration treatment of tailings before stockpiling to minimize the environmental risks caused by toxic metal(loid)s, and provide insights into the engineering application of microbial technologies in V-Ti magnetite tailing area.

Spatial distribution of toxic metal(loid)s at an abandoned zinc smelting site, Southern China

Toxic metal(loid) (TM) soil pollution at large-scale non-ferrous metal smelting contaminated sites is of great concern in China, but there are no detailed reports relating to them. A comprehensive study was conducted to determine contamination characteristics and horizontal and vertical spatial distribution patterns of soils at an abandoned zinc smelting site in Southern China. The spatial distribution of TMs revealed that soil environmental quality was seriously threatened, with Cd, Zn, As, Pb and Hg being the main contaminants present. The distribution of all TMs showed strong spatial heterogeneity and were expressed as a "patchy aggregation" pattern due to strong anthropogenic and production activities. Vertical migration of TMs indicated that the pollutants were mainly concentrated in the fill layers. Different contaminants had various migration depths, with migration occurring as: Cd > Hg > As > Zn > Pb> Cu> Mn> Sb. Analysis of their spatial variability showed that As, Pb, Cd and Hg had strong regional spatial variability. This research provides a new approach to comprehensively analyze TM pollution characteristics of non-ferrous smelting sites. It provides valuable information for guiding post-remediation strategies at abandoned non-ferrous metal smelting sites.

Enhanced effect of biochar on leaching vanadium and copper from stone coal tailings by Thiobacillus ferrooxidans

Among the many extraction technologies for recovering metal resources from tailings, bioleaching technology is gradually showing its momentum. In our research, the enhanced effect of biochar on the bioleaching of stone coal tailings by Thiobacillus ferrooxidans (T. ferrooxidans) has been explored. In the static bioleaching experiment for 10 days, the leaching rate of vanadium (V) and copper (Cu) increased by 26.8% and 21.0% respectively after adding 5 g/L biochar. The dynamic bioleaching experiment further verified that under the promotion of biochar, the 44 day cumulative leaching rate of V and Cu increased by 15.3% and 14.5%, respectively. The promoting effect of biochar on T. ferrooxidans was mainly reflected in two aspects. The unique porous structure of biochar created a microenvironment for free microorganisms for inhabitation, while storing abundant nutrients. Biochar can also act as an excellent electronic medium to promote electron transfer, improving the oxidation ability of T. ferrooxidans on Fe²⁺. Furthermore, the presence of biochar may effectively inhibit the formation of jarosite precipitation on tailings in bioleaching, thereby improving the dissolution of tailings and the release of metal elements. This study demonstrates that biochar-enhanced bioleaching may be an efficient and environmentally friendly method for recovering metal resources from tailings.

Antimony, beryllium, cobalt, and vanadium in urban park soils in Beijing: Machine learning-based source identification and health risk-based soil environmental criteria

The pollution situation of antimony (Sb), beryllium (Be), cobalt (Co), and vanadium (V) is poorly understood, although they are widely used in daily life and production processes. Moreover, threshold levels ("soil environmental criteria", SEC) for these pollutants are lacking in China, which impedes effective soil quality management. This study explored pollution characteristics for park soils in urban area of Beijing, China at first. Then multivariate statistical analysis and machine learning model were used to identify the main sources of pollutants. Additionally, probabilistic health risk and SEC were studied to assess the risks of pollutants and manage soil pollutants. The results revealed that the overall pollution levels of Be, Co, Sb, and V were low, but Be and Sb were enriched to varying degrees. Source apportionment showed that Sb (85.5%) was mainly derived from fuel combustion and industrial legacy, Co (66.7%) and V (82.5%) from natural processes, and Be from the natural background (39.3%) and anthropogenic sources (53.8%). Risk assessment indicated that the pollutants' carcinogenic and noncarcinogenic risks were negligible. Exposure frequency and soil ingestion rate were the most important parameters affecting health risks. The SEC of Be, Co, Sb, and V were 31, 39.7, 41.3, and 348 mg/kg, respectively, all of which are higher than the corresponding soil quality standards in China, indicating that current soil quality standards may be too conservative for urban park land. This study provides a reference for the management of soil pollutants in Beijing's urban parks, and the formulation of soil environmental quality standards.

Biologically removing vanadium(V) from groundwater by agricultural biomass

Vanadium (V) in groundwater can pose a serious threat on both environment and health. Agricultural biomass contains solid carbon source (SCS) and could be attractive for biologically removing V(V). For this purpose, cypress sawdust, corn cob and wheat straw were selected as SCSs to remove vanadate (NaVO₃). The experiments demonstrated a high efficiency of V(V) up to 98.6%, and the anaerobically biological reduction of V(V) to V(IV) by wheat straw was identified to be the best SCS by the spectrum analysis of XRD and FTIR. Along with increasing the fragment size of wheat straw, the V(V)-removal efficiency decreased, and the fragment size down to 1-3 mm was confirmed to have a significant bio-removal performance on V(V). Based on the analysis of 16s rRNA sequencing, the microbial abundance and diversity increased in the suspension liquid in the end, indicating that the microbial community could tolerate and/or detoxify V(V), besides degrading lignocellulosic materials.

Regulation of heavy metals accumulated by Acorus calamus L. in constructed wetland through different nitrogen forms

Improving accumulation of heavy metals (HMs) by plants is an important pathway for constructed wetland (CW) to alleviate the environmental risks caused by their release. This study aims to regulate HMs (Cr, Ni, Cu, Zn, and Cd) accumulated by Acorus calamus L. in the sandy substrate CW with different nitrogen forms, including ammonia (NH₄⁺), nitrate (NO₃‾), and NH₄⁺/NO₃‾ (1:1) in synthetic tailwaters. In general, the removal efficiency of HMs by CW could reach 92.4% under the initial concentrations below 500 μg/L. Accumulation percentages of HMs in the shoots and roots of plants in CW with NH₄⁺ and NH₄⁺/NO₃‾ influents increased by 52-395% and 15-101%, respectively, when compared with that of NO₃‾ treatment. Influents with NH₄⁺ promoted plant growth of Acorus calamus L. and metabolic functions, such as carbohydrate metabolism/amino acid metabolism, related to HMs mobilization of rhizosphere bacterial communities, which might induce more organic acids and amino acids secreted by plants and microbes during their metabolic processes. These are the main reasons for the enhancive mobilization of HMs from their precipitation fractions and their uptake by plants in CW with NH₄⁺ treatments. Moreover, the enhancement of organics secreted from plants and microbes also led to the high denitrification efficiency and nitrogen removal in CW. Overall, this study could provide a feasible method for the enhancive accumulation of HMs by wetland plants via the regulation water treatment process to appropriately increase NH₄⁺ for CW.

Performance and mechanisms for V(v) bio-reduction by straw: key influencing factors

A high concentration of vanadium [V(v)] in groundwater is extremely harmful for humans. Weak movability and low toxicity after microbial V(v) reduction have attracted remarkable attention, especially for using solid carbon sources. However, the influencing factors remain unclear. In this study, the initial V(v) concentration, inocula amount and straw dosage were examined to ascertain the mechanisms behind them. Increasing the initial V(v) concentration led to the decrease of the V(v) removal efficiency, which was also positively correlated with the straw dosage within a certain range. The initial sludge amount was not a main factor affecting microbial V(v) removal in this study. With the initial amount of 10 mg L-1 V(v), 25 mL initial inocula and 5 g straw, 88.2% of V(v) was removed. According to the dissolved organic matter (DOM) analysis results, microbial activity prevailed in groups with higher V(v) removal efficiency, indicating that the V(v) bio-reduction was attributed to the microbial activity, which was considered a major factor. Functional species as unclassified_f_Enterobacteriaceae presumably contributed to the V(v) bioreduction, with upregulated ABC transporter genes and enzymes.