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Schaefke B, Li J, Zhao B, Wang L, Tseng YT. Slumber under pressure: REM sleep and stress response. Prog Neurobiol 2025; 249:102771. [PMID: 40273975 DOI: 10.1016/j.pneurobio.2025.102771] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2024] [Revised: 04/17/2025] [Accepted: 04/17/2025] [Indexed: 04/26/2025]
Abstract
Sleep, a state of reduced responsiveness and distinct brain activity, is crucial across the animal kingdom. This review explores the potential adaptive functions of REM sleep in adapting to stress, emphasizing its role in memory consolidation, emotional regulation, and threat processing. We further explore the underlying neural mechanisms linking stress responses to REM sleep. By synthesizing current findings, we propose that REM sleep allows animals to "rehearse" or simulate responses to danger in a secure, offline state, while also maintaining emotional balance. Environmental factors, such as predation risk and social dynamics, further influence REM sleep. This modulation may enhance survival by optimizing stress responses while fulfilling physiological needs in animals. Insights into REM sleep's role in animals may shed light on human sleep in the context of modern stressors and sleep disruptions. This review also explores the complex interplay between stress, immunity, sleep disruptions-particularly involving REM sleep-and their evolutionary underpinnings.
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Affiliation(s)
- Bernhard Schaefke
- CAS Key Laboratory of Brain Connectome and Manipulation, Shenzhen-Hong Kong Institute of Brain Science, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China; Guangdong Provincial Key Laboratory of Brain Connectome and Behavior, the Brain Cognition and Brain Disease Institute, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China.
| | - Jingfei Li
- CAS Key Laboratory of Brain Connectome and Manipulation, Shenzhen-Hong Kong Institute of Brain Science, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China; Guangdong Provincial Key Laboratory of Brain Connectome and Behavior, the Brain Cognition and Brain Disease Institute, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China; University of Chinese Academy of Science, Beijing 10049, China
| | - Binghao Zhao
- CAS Key Laboratory of Brain Connectome and Manipulation, Shenzhen-Hong Kong Institute of Brain Science, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China; Guangdong Provincial Key Laboratory of Brain Connectome and Behavior, the Brain Cognition and Brain Disease Institute, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China
| | - Liping Wang
- CAS Key Laboratory of Brain Connectome and Manipulation, Shenzhen-Hong Kong Institute of Brain Science, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China; Guangdong Provincial Key Laboratory of Brain Connectome and Behavior, the Brain Cognition and Brain Disease Institute, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China; Key Laboratory of Brain Cognition and Brain-inspired Intelligence Technology, Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, China.
| | - Yu-Ting Tseng
- CAS Key Laboratory of Brain Connectome and Manipulation, Shenzhen-Hong Kong Institute of Brain Science, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China; Guangdong Provincial Key Laboratory of Brain Connectome and Behavior, the Brain Cognition and Brain Disease Institute, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China; Key Laboratory of Brain Cognition and Brain-inspired Intelligence Technology, Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, China.
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2
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Slominski AT, Kim TK, Janjetovic Z, Slominski RM, Ganguli-Indra G, Athar M, Indra AK, Reiter RJ, Kleszczyński K. Melatonin and the Skin: Current Progress and Perspectives for Human Health. J Invest Dermatol 2025; 145:1345-1360.e2. [PMID: 39918482 PMCID: PMC12103292 DOI: 10.1016/j.jid.2024.11.012] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2024] [Revised: 11/22/2024] [Accepted: 11/27/2024] [Indexed: 05/25/2025]
Abstract
Skin has the capacity to produce and metabolize melatonin into biologically active metabolites. These metabolites exert phenotypic activities through receptor-dependent and receptor-independent action, including direct antioxidant activity, interaction with regulatory proteins, and regulation of mitochondrial function. They can act on G-protein-coupled melatonin receptors (MT1 and MT2) as well as nuclear aryl hydrocarbon receptor and peroxisome proliferator-activated receptor γ receptors. These metabolic pathways, together with receptor- and nonreceptor-mediated phenotypic activities of its intermediates, has been identified as a cutaneous melatoninergic system. Its pharmacological modulation and topical application of melatonin or its metabolites can be used to prevent and treat skin disorders and cutaneous aging.
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Affiliation(s)
- Andrzej T Slominski
- Department of Dermatology, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, USA; Cancer Chemoprevention Program, Comprehensive Cancer Center, The University of Alabama at Birmingham, Birmingham, Alabama, USA; Pathology and Laboratory Medicine Service, VA Medical Center, Birmingham, Alabama, USA.
| | - Tae-Kang Kim
- Department of Dermatology, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, USA
| | - Zorica Janjetovic
- Department of Dermatology, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, USA
| | - Radomir M Slominski
- Department of Medicine-Immunology/Rheumatology, The University of Alabama at Birmingham, Birmingham, Alabama, USA; Informatics Institute, The University of Alabama at Birmingham, Birmingham, Alabama, USA
| | - Gitali Ganguli-Indra
- Department of Pharmaceutical Sciences, College of Pharmacy, Oregon State University, Corvallis, Oregon, USA; Knight Cancer Institute, Oregon Health & Science University, Portland, Oregon, USA
| | - Mohammad Athar
- Department of Dermatology, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, USA; Pathology and Laboratory Medicine Service, VA Medical Center, Birmingham, Alabama, USA
| | - Arup K Indra
- Department of Pharmaceutical Sciences, College of Pharmacy, Oregon State University, Corvallis, Oregon, USA; Knight Cancer Institute, Oregon Health & Science University, Portland, Oregon, USA; Department of Dermatology, Oregon Health & Science University, Portland, Oregon, USA
| | - Russel J Reiter
- Department of Cell Systems and Anatomy, Long School of Medicine, UT Health San Antonio, San Antonio, Texas, USA
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3
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Pandi-Perumal SR, Saravanan KM, Paul S, Warren Spence D, Chidambaram SB. Studying sleep orthologs in Epsilonproteobacteria through an evolutionary lens: investigating sleep mysteries through phylogenomics. World J Microbiol Biotechnol 2025; 41:154. [PMID: 40289222 DOI: 10.1007/s11274-025-04361-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2025] [Accepted: 04/09/2025] [Indexed: 04/30/2025]
Abstract
The current study employed phylogenomic methods to examine sleep-related genes' evolutionary role and significance in Sulfurimonas paralvinellae of the Epsilonproteobacteria class. This has facilitated the identification of conserved sleep orthologs, including DnaK (Hsp70), serine hydroxymethyltransferase (SHMT), and potassium channel family proteins, exhibiting sequence similarities ranging from 39.13% to 61.45%. These findings align with prior research indicating that chaperones and ion channels are conserved during sleep. This was demonstrated by the observation that proteins with fewer domains exhibited more significant conservation than others, such as adenylate kinase (AK). Distinct adaptations in bifunctional protein-serine/threonine kinases and phosphatases were linked to S. paralvinellae, an extremophilic organism adapted to high-pressure and/or high-temperature conditions, indicating functional divergence influenced by the organism's environment. The Gene Ontology study results indicated catalytic activity, potassium channel function, and cellular processes, underscoring the significance of ion channels in regulating the sleep-wake cycle. Furthermore, the categories not recognized as particularly significant for the over-represented genes encompassed metabolic and signal transduction categories, suggesting enhanced functional flexibility within this protein subfamily. The findings emphasize that orthologous interactions are complex and influenced by subfunctionalization and neofunctionalization of ecology and evolution. These findings enhance the existing understanding of the evolution of sleep-related genes and their association with metabolic and environmental changes, providing a foundation for subsequent experimental investigations and cross-taxonomic comparisons.
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Affiliation(s)
- Seithikurippu R Pandi-Perumal
- Department of Pharmacology, JSS College of Pharmacy, JSS Academy of Higher Education & Research, Mysuru, Karnataka, 570015, India.
- Centre for Research and Development, Chandigarh University, Mohali, Punjab, 140413, India.
- Division of Research and Development, Lovely Professional University, Phagwara, Punjab, 144411, India.
| | | | - Sayan Paul
- Department of Biochemistry & Molecular Biology, The University of Texas Medical Branch at Galveston, Galveston, TX, 77555, USA
| | | | - Saravana Babu Chidambaram
- Department of Pharmacology, JSS College of Pharmacy, JSS Academy of Higher Education & Research, Mysuru, Karnataka, 570015, India.
- Centre for Experimental Pharmacology & Toxicology, Central Animal Facility, JSS Academy of Higher Education & Research, Mysuru, 570015, Karnataka, India.
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4
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Sharp V, Pfeil K, Kitch K, Medina M. Cassiopea xamachana polyp feeding under husbandry conditions. MICROPUBLICATION BIOLOGY 2025; 2025:10.17912/micropub.biology.001561. [PMID: 40308943 PMCID: PMC12041945 DOI: 10.17912/micropub.biology.001561] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Figures] [Subscribe] [Scholar Register] [Received: 03/03/2025] [Revised: 04/10/2025] [Accepted: 04/11/2025] [Indexed: 05/02/2025]
Abstract
Research on the upside-down jellyfish Cassiopea xamachana has increased in the past few decades, hence the need for more efficient husbandry protocols. We tested the effect of weekly feeding frequencies, light cycles, and nutrient supplements on symbiotic and aposymbiotic polyp asexual reproduction and mortality. C. xamachana polyps have better survivorship and reproduction when kept in a day/night cycle and given additional food beyond Artemia nauplii.
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Affiliation(s)
- Victoria Sharp
- Pennsylvania State University, State College, Pennsylvania, United States
| | - Kendra Pfeil
- Pennsylvania State University, State College, Pennsylvania, United States
| | - Kaitlin Kitch
- Pennsylvania State University, State College, Pennsylvania, United States
| | - Mónica Medina
- Pennsylvania State University, State College, Pennsylvania, United States
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5
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Pradhan S, Madan GK, Kang D, Bueno E, Atanas AA, Kramer TS, Dag U, Lage JD, Gomes MA, Lu AKY, Park J, Flavell SW. Pathogen infection induces sickness behaviors through neuromodulators linked to stress and satiety in C. elegans. Nat Commun 2025; 16:3200. [PMID: 40180949 PMCID: PMC11968842 DOI: 10.1038/s41467-025-58478-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2024] [Accepted: 03/20/2025] [Indexed: 04/05/2025] Open
Abstract
When animals are infected by a pathogen, peripheral sensors of infection signal to the brain to induce adaptive behavioral changes known as sickness behaviors. While the pathways that signal from the periphery to the brain have been intensively studied, how central circuits are reconfigured to elicit these behavioral changes is not well understood. Here we find that neuromodulatory systems linked to stress and satiety are recruited during chronic pathogen infection to alter the behavior of Caenorhabditis elegans. Upon infection by the bacterium Pseudomonas aeruginosa PA14, C. elegans decrease feeding, then display reversible bouts of quiescence, and eventually die. The ALA neuron and its neuropeptides FLP-7, FLP-24, and NLP-8, which control stress-induced sleep in uninfected animals, promote the PA14-induced feeding reduction. However, the ALA neuropeptide FLP-13 instead delays quiescence and death in infected animals. Cell-specific genetic perturbations show that the neurons that release FLP-13 to delay quiescence in infected animals are distinct from ALA. A brain-wide imaging screen reveals that infection-induced quiescence involves ASI and DAF-7/TGF-beta, which control satiety-induced quiescence in uninfected animals. Our results suggest that a common set of neuromodulators are recruited across different physiological states, acting from distinct neural sources and in distinct combinations to drive state-dependent behaviors.
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Affiliation(s)
- Sreeparna Pradhan
- Howard Hughes Medical Institute, Picower Institute for Learning & Memory, Department of Brain & Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Gurrein K Madan
- Howard Hughes Medical Institute, Picower Institute for Learning & Memory, Department of Brain & Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Di Kang
- Howard Hughes Medical Institute, Picower Institute for Learning & Memory, Department of Brain & Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Eric Bueno
- Howard Hughes Medical Institute, Picower Institute for Learning & Memory, Department of Brain & Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Adam A Atanas
- Howard Hughes Medical Institute, Picower Institute for Learning & Memory, Department of Brain & Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Talya S Kramer
- Howard Hughes Medical Institute, Picower Institute for Learning & Memory, Department of Brain & Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Ugur Dag
- Howard Hughes Medical Institute, Picower Institute for Learning & Memory, Department of Brain & Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Jessica D Lage
- Howard Hughes Medical Institute, Picower Institute for Learning & Memory, Department of Brain & Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Matthew A Gomes
- Howard Hughes Medical Institute, Picower Institute for Learning & Memory, Department of Brain & Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Alicia Kun-Yang Lu
- Howard Hughes Medical Institute, Picower Institute for Learning & Memory, Department of Brain & Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Jungyeon Park
- Howard Hughes Medical Institute, Picower Institute for Learning & Memory, Department of Brain & Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Steven W Flavell
- Howard Hughes Medical Institute, Picower Institute for Learning & Memory, Department of Brain & Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA.
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6
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Sowersby W, Kobayashi T, Awata S, Sogawa S, Kohda M. The influence of sleep disruption on learning and memory in fish. J Sleep Res 2025:e70005. [PMID: 40104880 DOI: 10.1111/jsr.70005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2024] [Revised: 12/22/2024] [Accepted: 01/29/2025] [Indexed: 03/20/2025]
Abstract
Sleep is a ubiquitous process that has been conserved in animals. Yet, our understanding of the functions of sleep largely derives from a few species. Sleep is considered to play an important role in mental processes, including learning and memory consolidation, but how widespread this relationship is across taxa remains unclear. Here, we test the impact of sleep disruption on the ability of the cleaner fish (Labroides dimidiatus) to both learn and remember a novel cognitive task. Sleep was disrupted by exposing a subset of fish to light at set intervals during the night. We found a significant negative relationship between sleep disruption and the ability to learn a novel task. Specifically, we found that fish in the light-disturbed sleep treatment took significantly longer and made more incorrect decisions to find a food reward, compared with the undisturbed sleep treatment. All fish were then allowed a normal sleep schedule and retested several days later to assess their ability to remember the task. In contrast to the learning phase, we observed no significant differences between the two treatment groups in remembering the food reward several days later. Our results demonstrate a negative impact of sleep disruption on performance in a cognitive challenging task that appeared to have the strongest effect when fish were first exposed to the challenge. Importantly, we show that the association between sleep and mental processes, such as learning, may be widespread across vertebrate taxa and potentially have an early origin in the evolutionary history of vertebrate animals.
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Affiliation(s)
- Will Sowersby
- Laboratory of Animal Sociology, Department of Biology, Osaka Metropolitan University, Osaka, Japan
| | - Taiga Kobayashi
- Laboratory of Animal Sociology, Department of Biology, Osaka Metropolitan University, Osaka, Japan
| | - Satoshi Awata
- Laboratory of Animal Sociology, Department of Biology, Osaka Metropolitan University, Osaka, Japan
| | - Shumpei Sogawa
- Laboratory of Animal Sociology, Department of Biology, Osaka Metropolitan University, Osaka, Japan
| | - Masanori Kohda
- Laboratory of Animal Sociology, Department of Biology, Osaka Metropolitan University, Osaka, Japan
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7
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Keleş MF, Sapci AOB, Brody C, Palmer I, Mehta A, Ahmadi S, Le C, Taştan Ö, Keleş S, Wu MN. FlyVISTA, an integrated machine learning platform for deep phenotyping of sleep in Drosophila. SCIENCE ADVANCES 2025; 11:eadq8131. [PMID: 40073129 PMCID: PMC11900856 DOI: 10.1126/sciadv.adq8131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/31/2024] [Accepted: 02/03/2025] [Indexed: 03/14/2025]
Abstract
There is great interest in using genetically tractable organisms such as Drosophila to gain insights into the regulation and function of sleep. However, sleep phenotyping in Drosophila has largely relied on simple measures of locomotor inactivity. Here, we present FlyVISTA, a machine learning platform to perform deep phenotyping of sleep in flies. This platform comprises a high-resolution closed-loop video imaging system, coupled with a deep learning network to annotate 35 body parts, and a computational pipeline to extract behaviors from high-dimensional data. FlyVISTA reveals the distinct spatiotemporal dynamics of sleep and wake-associated microbehaviors at baseline, following administration of the sleep-inducing drug gaboxadol, and with dorsal fan-shaped body drivers. We identify a microbehavior ("haltere switch") exclusively seen during quiescence that indicates a deeper sleep stage. These results enable the rigorous analysis of sleep in Drosophila and set the stage for computational analyses of microbehaviors in quiescent animals.
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Affiliation(s)
- Mehmet F. Keleş
- Department of Neurology, Johns Hopkins University, Baltimore, MD 21205, USA
| | - Ali Osman Berk Sapci
- Department of Computer Science, Sabanci University, Tuzla, Istanbul 34956, Turkey
| | - Casey Brody
- Department of Neurology, Johns Hopkins University, Baltimore, MD 21205, USA
| | - Isabelle Palmer
- Department of Neurology, Johns Hopkins University, Baltimore, MD 21205, USA
| | - Anuradha Mehta
- Department of Neurology, Johns Hopkins University, Baltimore, MD 21205, USA
| | - Shahin Ahmadi
- Department of Neurology, Johns Hopkins University, Baltimore, MD 21205, USA
| | - Christin Le
- Department of Neurology, Johns Hopkins University, Baltimore, MD 21205, USA
| | - Öznur Taştan
- Department of Computer Science, Sabanci University, Tuzla, Istanbul 34956, Turkey
| | - Sündüz Keleş
- Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI 53706, USA
| | - Mark N. Wu
- Department of Neurology, Johns Hopkins University, Baltimore, MD 21205, USA
- Department of Neuroscience, Johns Hopkins University, Baltimore, MD 21287, USA
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8
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Frank MG. Sleep Phylogeny: Have We Jumped the Shark? Sleep Med Clin 2025; 20:19-24. [PMID: 39894596 DOI: 10.1016/j.jsmc.2024.10.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2025]
Abstract
Sleep is considered to be ubiquitous in the animal kingdom. Scientists in part believe this because sleep is increasingly defined solely by behavioral measures. This has resulted in an astonishing expansion of species reported to sleep. But have we gone too far? Have scientists jumped the shark? This idiom refers to when an idea has exhausted its core intent and creates ideas that are discordant with its original purpose. In this commentary, I discuss what I see as an emerging problem in how we define sleep and the attendant implications.
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Affiliation(s)
- Marcos G Frank
- Department of Translational Medicine and Physiology, Elson S. Floyd College of Medicine, Washington State University, 412 East Spokane Falls Boulevard, Spokane, WA 99202, USA; Gleason Institute for Neuroscience, Washington State University, Spokane, WA, USA.
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9
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Larrondo LF. Circadian rhythms: pervasive, and often times evasive. Philos Trans R Soc Lond B Biol Sci 2025; 380:20230477. [PMID: 39842475 DOI: 10.1098/rstb.2023.0477] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2024] [Revised: 08/23/2024] [Accepted: 08/30/2024] [Indexed: 01/24/2025] Open
Abstract
Most circadian texts begin by stating that clocks are pervasive throughout the tree of life. Indeed, clock mechanisms have been described from cyanobacteria to humans, representing a notable example of convergent evolution: yet, there are several phyla in animals, protists or within fungi and bacteria, in which homologs of some-or all-known clock components seem to be absent, posing inevitable questions about the evolution of circadian systems. Moreover, as we move away from model organisms, there are several taxa in which core clock elements can be identified at the genomic levels. However, the functional description of those putative clocks has been hard to achieve, as rhythmicity is not observed unless defined abiotic or nutritional cues are provided. The mechanisms 'conditioning' the functionality of clocks remain uncertain, emphasizing the need to delve further into non-model circadian systems. As the absence of evidence is not evidence of absence, the lack of known core-clock homologs or of observable rhythms in a given organism, cannot be an a priori criterion to discard the presence of a functional clock, as rhythmicity may be limited to yet untested experimental conditions or phenotypes. This article seeks to reflect on these topics, highlighting some of the pressing questions awaiting to be addressed.This article is part of the Theo Murphy meeting issue 'Circadian rhythms in infection and immunity'.
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Affiliation(s)
- Luis F Larrondo
- ANID-Millennium Science Initiative Program-Millennium Institute for Integrative Biology (iBio), Santiago 8331150, Chile
- Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago 8331150, Chile
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10
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Pandi-Perumal SR, Saravanan KM, Paul S, Spence DW, Chidambaram SB. Unraveling the Mysteries of Sleep: Exploring Phylogenomic Sleep Signals in the Recently Characterized Archaeal Phylum Lokiarchaeota near Loki's Castle. Int J Mol Sci 2024; 26:60. [PMID: 39795919 PMCID: PMC11719702 DOI: 10.3390/ijms26010060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2024] [Revised: 12/19/2024] [Accepted: 12/23/2024] [Indexed: 01/13/2025] Open
Abstract
Sleep is a universally conserved behavior whose origin and evolutionary purpose are uncertain. Using phylogenomics, this article investigates the evolutionary foundations of sleep from a never before used perspective. More specifically, it identifies orthologs of human sleep-related genes in the Lokiarchaeota of the Asgard superphylum and examines their functional role. Our findings indicate that a conserved suite of genes associated with energy metabolism and cellular repair is involved, thus suggesting that sleep plays a primordial role in cellular maintenance. The data cited lend credence to the idea that sleep improves organismal fitness across evolutionary time by acting as a restorative process. Notably, our approach demonstrates that phylogenomics is more useful than standard phylogenetics for clarifying common evolutionary traits. By offering insight into the evolutionary history of sleep and putting forth a novel model framework for sleep research across taxa, these findings contribute to our growing understanding of the molecular foundation of sleep. This study lays the groundwork for further investigations into the importance of sleep in various organisms. Such investigations could have consequences for improving human health and more generally could provide a deeper comprehension of the fundamental processes of life.
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Affiliation(s)
- Seithikurippu R. Pandi-Perumal
- Department of Pharmacology, JSS College of Pharmacy, JSS Academy of Higher Education & Research, Mysuru 570015, Karnataka, India
- Centre for Research and Development, Chandigarh University, Mohali 140413, Punjab, India
- Division of Research and Development, Lovely Professional University, Phagwara 144411, Punjab, India
| | | | - Sayan Paul
- Department of Biochemistry & Molecular Biology, The University of Texas Medical Branch at Galveston, Galveston, TX 77555, USA;
| | | | - Saravana Babu Chidambaram
- Department of Pharmacology, JSS College of Pharmacy, JSS Academy of Higher Education & Research, Mysuru 570015, Karnataka, India
- Centre for Experimental Pharmacology & Toxicology, JSS Academy of Higher Education & Research, Mysuru 570015, Karnataka, India
- Special Interest Group—Brain, Behaviour and Cognitive Neurosciences, JSS Academy of Higher Education & Research, Mysuru 570015, Karnataka, India
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11
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Pastres M, Maggini I, Cardinale M, Fusani L, Ferretti A. Sleep Posture Influences Metabolic Rate and Vigilance in the Common Whitethroat (Curruca Communis). Integr Comp Biol 2024; 64:1848-1858. [PMID: 38744537 DOI: 10.1093/icb/icae031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2024] [Revised: 04/20/2024] [Accepted: 04/25/2024] [Indexed: 05/16/2024] Open
Abstract
Migration is an important life-history strategy that is adopted by a significant proportion of bird species from temperate areas. Birds initiate migration after accumulating considerable energy reserves, primarily in the form of fat and muscle. Sustained exercise, such as during the crossing of ecological barriers, leads to the depletion of energy reservesand increased physiological stress. Stopover sites, where birds rest and restore energy, play a fundamental role in mitigating these challenges. The duration of resting at stopover sites is influenced by environmental and physiological conditions upon arrival, and the amount of body fat reserves plays an important role. While sleep is recognized as essential for all organisms, its importance is accentuated during migration, where energy management becomes a survival constraint. Previous research indicated that individuals with larger fat reserves tend to sleep less and favor an untucked sleep posture, influencing energy recovery and anti-predatory vigilance. We explored the relationship between sleep behavior and posture, metabolic state, and energy conservation strategies during migration in the common whitethroat (Curruca communis). We were able to confirm that sleeping in a tucked position results in metabolic energy savings, at the cost of reduced vigilance. However, whitethroats did not show alterations of their sleep patterns as a response to the amount of stored reserves. This suggests that they may not be taking full advantage of the metabolic gains of sleeping in a tucked posture, at least at this stage of their migratory journey. We suggest that, to achieve optimal fuel accumulation and maximize stopover efficiency, whitethroats prioritize increased foraging over modulating their sleep patterns.
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Affiliation(s)
- Maia Pastres
- Department of chemistry, Life Sciences and Environmental Sustainability, Università degli Studi di Parma, 43124 Parma, Italy
- Konrad-Lorenz Institute of Ethology, University of Veterinary Medicine, 1160 Vienna, Austria
| | - Ivan Maggini
- Konrad-Lorenz Institute of Ethology, University of Veterinary Medicine, 1160 Vienna, Austria
| | - Massimiliano Cardinale
- Swedish University of Agricultural Sciences, Department of Aquatic Resources, Institute of Marine Research, SE-45321 Lysekil, Sweden
| | - Leonida Fusani
- Konrad-Lorenz Institute of Ethology, University of Veterinary Medicine, 1160 Vienna, Austria
- Department of Behavioural and Cognitive Biology, University of Vienna, 1030 Vienna, Austria
| | - Andrea Ferretti
- Konrad-Lorenz Institute of Ethology, University of Veterinary Medicine, 1160 Vienna, Austria
- Department of Behavioural and Cognitive Biology, University of Vienna, 1030 Vienna, Austria
- Avian Sleep Group, Max Planck Institute for Biological Intelligence, 82319 Seewiesen, Germany
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12
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Heckley AM, Harding CD, Page RA, Klein BA, Yovel Y, Diebold CA, Tilley HB. The effect of group size on sleep in a neotropical bat, Artibeus jamaicensis. JOURNAL OF EXPERIMENTAL ZOOLOGY. PART A, ECOLOGICAL AND INTEGRATIVE PHYSIOLOGY 2024; 341:1097-1110. [PMID: 39051138 PMCID: PMC11579820 DOI: 10.1002/jez.2860] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Revised: 06/06/2024] [Accepted: 07/08/2024] [Indexed: 07/27/2024]
Abstract
Sleep is associated with many costs, but is also important to survival, with a lack of sleep impairing cognitive function and increasing mortality. Sleeping in groups could alleviate sleep-associated costs, or could introduce new costs if social sleeping disrupts sleep. Working with the Jamaican fruit bat (Artibeus jamaicensis), we aimed to: (1) describe sleep architecture, (2) assess how sleeping in groups affects sleep, and (3) quantify total sleep time and identify rapid eye movement (REM) sleep using behavioral indicators that complement physiological evidence of sleep. Twenty-five adult bats were captured in Panama and recorded sleeping in an artificial roost enclosure. Three bats were fitted with an electromyograph and accelerometer and video recorded sleeping alone in controlled laboratory settings. The remaining 22 bats were assigned to differing social configurations (alone, dyad, triad, and tetrad) and video recorded sleeping in an outdoor flight cage. We found that sleep was highly variable among individuals (ranging from 2 h 53 min to 9 h 39 min over a 12-h period). Although we did not detect statistically significant effects and our sample size was limited, preliminary trends suggest that male bats may sleep longer than females, and individuals sleeping in groups may sleep longer than individuals sleeping alone. We also found a high correspondence between total sleep time quantified visually and quantified using actigraphy (with a 2-min immobility threshold) and identified physiological correlates of behaviorally-defined REM. These results serve as a starting point for future work on the ecology and evolution of sleep in bats and other wild mammals.
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Affiliation(s)
- Alexis M. Heckley
- Smithsonian Tropical Research InstituteGamboaPanama
- Department of Biology and Redpath MuseumMcGill UniversityQuebecCanada
| | - Christian D. Harding
- Division of Pulmonary, Critical Care, Sleep Medicine & PhysiologyUniversity of California San DiegoSan DiegoUSA
| | | | - Barrett A. Klein
- Department of BiologyUniversity of Wisconsin—La CrosseWisconsinUSA
| | - Yossi Yovel
- School of Zoology, School of NeuroscienceTel‐Aviv UniversityTel AvivIsrael
| | - Clarice A. Diebold
- Smithsonian Tropical Research InstituteGamboaPanama
- The Department of Physiological & Brain SciencesJohns Hopkins UniversityMarylandUSA
| | - Hannah B. Tilley
- Smithsonian Tropical Research InstituteGamboaPanama
- Division of Ecology and Biodiversity, School of Biological SciencesUniversity of Hong KongHong KongHong Kong
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13
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Rößler DC, Klein BA. More sleep for behavioral ecologists. JOURNAL OF EXPERIMENTAL ZOOLOGY. PART A, ECOLOGICAL AND INTEGRATIVE PHYSIOLOGY 2024; 341:1147-1156. [PMID: 39034483 DOI: 10.1002/jez.2856] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2024] [Revised: 06/26/2024] [Accepted: 06/28/2024] [Indexed: 07/23/2024]
Abstract
From jellyfish to parrot fish and roundworms to homeotherms, all animals are thought to sleep. Despite its presumed universality, sleep is a poorly understood behavior, varying significantly in its expression across, and even within, animal lineages. There is still no consensus about the origin, architecture, ecology of sleep, or even its defining characters. The field of behavioral ecology has the potential to extend our knowledge of sleep behavior to nontraditional models and in ecologically relevant settings. Here, we highlight current efforts in diversifying the field to generate stronger synergies between historically human-focused sleep research and behavioral ecology. Our primary aim is for behavioral ecology to enhance sleep research by contributing crucial observations as well as by creating novel comparative and evolutionary frameworks. At the same time, sleep research can enhance behavioral ecology by exposing the relevance of sleep to wakeful behaviors. Nikolaas Tinbergen's four levels of analysis have served as a foundation for comprehensively addressing questions in behavior, and we introduce some Tinbergian approaches to examine the interplay between sleep and wake under ecologically meaningful conditions.
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Affiliation(s)
- Daniela C Rößler
- Department of Biology, University of Konstanz, Konstanz, Germany
- Zukunftskolleg, University of Konstanz, Konstanz, Germany
- Department of Ecology of Animal Societies, Max Planck Institute of Animal Behavior, Konstanz, Germany
| | - Barrett A Klein
- Biology Department, University of Wisconsin-La Crosse, La Crosse, USA
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14
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Pandi-Perumal SR, Saravanan KM, Paul S, Chidambaram SB. Harnessing Simple Animal Models to Decode Sleep Mysteries. Mol Biotechnol 2024:10.1007/s12033-024-01318-z. [PMID: 39579174 DOI: 10.1007/s12033-024-01318-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2024] [Accepted: 10/28/2024] [Indexed: 11/25/2024]
Abstract
Whether it involves human subjects or non-human animals, basic, translational, or clinical sleep research poses significant ethical challenges for researchers and ethical committees alike. Sleep research greatly benefits from using diverse animal models, each offering unique insights into sleep control mechanisms. The fruit fly (Drosophila melanogaster) is a superior genetic model due to its quick generation period, large progenies, and rich genetic tools. Its well-characterized genome and ability to respond to hypnotics and stimulants make it an effective tool for studying sleep genetics and physiological foundations. The nematode (Caenorhabditis elegans) has a simpler neural organization and transparent body, allowing researchers to explore molecular underpinnings of sleep control. Vertebrate models, like zebrafish (Danio rerio), provide insights into circadian rhythm regulation, memory consolidation, and drug effects on sleep. Invertebrate models, like California sea hare (Aplysia californica) and Upside-down jellyfish (Cassiopea xamachana), have simpler nervous systems and behave similarly to humans, allowing for the examination of sleep principles without logistical and ethical challenges. Combining vertebrate and invertebrate animal models offers a comprehensive approach to studying sleep, improving our understanding of sleep regulation and potentially leading to new drug discovery processes for sleep disorders and related illnesses.
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Affiliation(s)
- Seithikurippu R Pandi-Perumal
- Department of Pharmacology, JSS College of Pharmacy, JSS Academy of Higher Education & Research, Mysuru, 570015, Karnataka, India
- Centre for Research and Development, Chandigarh University, Mohali, 140413, Punjab, India
- Division of Research and Development, Lovely Professional University, Phagwara, 144411, Punjab, India
| | | | - Sayan Paul
- Department of Biochemistry & Molecular Biology, The University of Texas Medical Branch at Galveston, Galveston, TX, 77555, USA
| | - Saravana Babu Chidambaram
- Department of Pharmacology, JSS College of Pharmacy, JSS Academy of Higher Education & Research, Mysuru, 570015, Karnataka, India.
- Centre for Experimental Pharmacology and Toxicology, Central Animal Facility, JSS Academy of Higher Education & Research, Mysuru, 570015, Karnataka, India.
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15
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Bond SM, Peralta AJ, Sirtalan D, Skeele DA, Huang H, Possidente DR, Vecsey CG. Differential regulation of sleep by blue, green, and red light in Drosophila melanogaster. Front Behav Neurosci 2024; 18:1476501. [PMID: 39539940 PMCID: PMC11557423 DOI: 10.3389/fnbeh.2024.1476501] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2024] [Accepted: 10/18/2024] [Indexed: 11/16/2024] Open
Abstract
Introduction Exposure to blue-enriched light from electronic devices is an emergent disruptor of human sleep, especially at particular times of day. Further dissection of this phenomenon necessitates modeling in a tractable model organism. Methods Thus, we investigated the effects of light color on sleep in Drosophila melanogaster. We measured sleep in red-eyed Canton-S (CS) and white-eyed w 1118 flies in baseline 12:12 light/dark conditions and experimental conditions with light-color (blue, red, or green) exposure for all 12 h of daylight or 3 h in the morning or evening. Results Blue light reduced daytime and nighttime sleep in CS but not in w 1118, potentially indicating a role for the compound eye in blue light's effects on fruit fly sleep. Red light, especially in the evening, reduced sleep during exposure in both strains. Green light had minimal effects on sleep in CS flies, but evening exposure reduced sleep in w 1118 flies, mimicking red light's effects. Discussion In conclusion, light's effects on sleep in D. melanogaster are dependent on wavelength and time-of-day. Future studies will aim to dissect these mechanisms genetically.
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Affiliation(s)
- Samuel M. Bond
- Neuroscience Program, Skidmore College, Saratoga Springs, NY, United States
- Department of Neurobiology, UMass Chan Medical School, Worcester, MA, United States
| | - Aaliyah J. Peralta
- Neuroscience Program, Skidmore College, Saratoga Springs, NY, United States
| | - Dilhan Sirtalan
- Neuroscience Program, Skidmore College, Saratoga Springs, NY, United States
| | - Dominic A. Skeele
- Neuroscience Program, Skidmore College, Saratoga Springs, NY, United States
| | - Haoyang Huang
- Neuroscience Program, Skidmore College, Saratoga Springs, NY, United States
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16
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Nagata RM, D'Ambra I, Lauritano C, von Montfort GM, Djeghri N, Jordano MA, Colin SP, Costello JH, Leoni V. Physiology and functional biology of Rhizostomeae jellyfish. ADVANCES IN MARINE BIOLOGY 2024; 98:255-360. [PMID: 39547751 DOI: 10.1016/bs.amb.2024.07.007] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2024]
Abstract
Rhizostomeae species attract our attention because of their distinctive body shape, their large size and because of blooms of some species in coastal areas around the world. The impacts of these blooms on human activities, and the interest in consumable species and those of biotechnological value have led to a significant expansion of research into the physiology and functional biology of Rhizostomeae jellyfish over the last years. This review brings together information generated over these last decades on rhizostome body composition, locomotion, toxins, nutrition, respiration, growth, among other functional parameters. Rhizostomes have more than double the carbon content per unit of biomass than jellyfish of Semaeostomeae. They swim about twice as fast, and consume more oxygen than other scyphozoans of the same size. Rhizostomes also have faster initial growth in laboratory and the highest body growth rates measured in nature, when compared to other medusae groups. Parameters such as body composition, nutrition and excretion are highly influenced by the presence of symbiotic zooxanthellae in species of the Kolpophorae suborder. These physiological and functional characteristics may reveal a wide range of adaptive responses, but our conclusions are still based on studies of a limited number of species. Available data indicates that Rhizosotomeae jellyfish have a higher energy demand and higher body productivity when compared to other jellyfish groups. The information gathered here can help ecologists better understand and make more assertive predictions on the role of these jellyfish in their ecosystems.
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Affiliation(s)
- Renato M Nagata
- Laboratório de Zooplâncton, Instituto de Oceanografia, Universidade Federal do Rio Grande (FURG), Rio Grande, RS, Brazil; Programa de Pós-graduação em Oceanografia Biológica (PPGOB), Instituto de Oceanografia, Universidade Federal do Rio Grande (FURG), Rio Grande, RS, Brazil.
| | - Isabella D'Ambra
- Integrative Marine Ecology Department, Stazione Zoologica Anton Dohrn, Napoli, Italy; National Center for Future Biodiversity (NFBC), Palermo, Italy
| | - Chiara Lauritano
- Ecosustainable Marine Biotechnology Department, Stazione Zoologica Anton Dohrn, Napoli, Italy
| | - Guilherme M von Montfort
- Laboratório de Zooplâncton, Instituto de Oceanografia, Universidade Federal do Rio Grande (FURG), Rio Grande, RS, Brazil; Programa de Pós-graduação em Oceanografia Biológica (PPGOB), Instituto de Oceanografia, Universidade Federal do Rio Grande (FURG), Rio Grande, RS, Brazil
| | - Nicolas Djeghri
- The Marine Biological Association, The Laboratory, Citadel Hill, Plymouth, United Kingdom; University of Brest (UBO), Institut Universitaire Européen de la Mer (IUEM), Laboratoire des sciences de l'environnement marin (LEMAR, UMR 6539), Plouzané, France
| | - Mayara A Jordano
- Departamento de Zoologia, Instituto de Biociências, Universidade de São Paulo, São Paulo, SP, Brazil
| | - Sean P Colin
- Marine Biology and Environmental Science, Roger Williams University, Bristol, RI, United States; Whitman Center, Marine Biological Laboratory, Woods Hole, MA, United States
| | - John H Costello
- Whitman Center, Marine Biological Laboratory, Woods Hole, MA, United States; Biology Department, Providence College, Providence, RI, United States
| | - Valentina Leoni
- CoNISMa, Consorzio Nazionale Interuniversitario per le Scienze del Mare, Rome, Italy
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17
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Kim TK, Slominski RM, Pyza E, Kleszczynski K, Tuckey RC, Reiter RJ, Holick MF, Slominski AT. Evolutionary formation of melatonin and vitamin D in early life forms: insects take centre stage. Biol Rev Camb Philos Soc 2024; 99:1772-1790. [PMID: 38686544 PMCID: PMC11368659 DOI: 10.1111/brv.13091] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Revised: 04/11/2024] [Accepted: 04/17/2024] [Indexed: 05/02/2024]
Abstract
Melatonin, a product of tryptophan metabolism via serotonin, is a molecule with an indole backbone that is widely produced by bacteria, unicellular eukaryotic organisms, plants, fungi and all animal taxa. Aside from its role in the regulation of circadian rhythms, it has diverse biological actions including regulation of cytoprotective responses and other functions crucial for survival across different species. The latter properties are also shared by its metabolites including kynuric products generated by reactive oxygen species or phototransfomation induced by ultraviolet radiation. Vitamins D and related photoproducts originate from phototransformation of ∆5,7 sterols, of which 7-dehydrocholesterol and ergosterol are examples. Their ∆5,7 bonds in the B ring absorb solar ultraviolet radiation [290-315 nm, ultraviolet B (UVB) radiation] resulting in B ring opening to produce previtamin D, also referred to as a secosteroid. Once formed, previtamin D can either undergo thermal-induced isomerization to vitamin D or absorb UVB radiation to be transformed into photoproducts including lumisterol and tachysterol. Vitamin D, as well as the previtamin D photoproducts lumisterol and tachysterol, are hydroxylated by cyochrome P450 (CYP) enzymes to produce biologically active hydroxyderivatives. The best known of these is 1,25-dihydroxyvitamin D (1,25(OH)2D) for which the major function in vertebrates is regulation of calcium and phosphorus metabolism. Herein we review data on melatonin production and metabolism and discuss their functions in insects. We discuss production of previtamin D and vitamin D, and their photoproducts in fungi, plants and insects, as well as mechanisms for their enzymatic activation and suggest possible biological functions for them in these groups of organisms. For the detection of these secosteroids and their precursors and photoderivatives, as well as melatonin metabolites, we focus on honey produced by bees and on body extracts of Drosophila melanogaster. Common biological functions for melatonin derivatives and secosteroids such as cytoprotective and photoprotective actions in insects are discussed. We provide hypotheses for the photoproduction of other secosteroids and of kynuric metabolites of melatonin, based on the known photobiology of ∆5,7 sterols and of the indole ring, respectively. We also offer possible mechanisms of actions for these unique molecules and summarise differences and similarities of melatoninergic and secosteroidogenic pathways in diverse organisms including insects.
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Affiliation(s)
- Tae-Kang Kim
- Department of Dermatology, University of Alabama at Birmingham, Birmingham, AL, 35294, USA
| | - Radomir M Slominski
- Department of Genetics, Genomics, Bioinformatics and Informatics Institute, University of Alabama at Birmingham, Birmingham, AL, 35294, USA
| | - Elzbieta Pyza
- Department of Cell Biology and Imaging, Institute of Zoology and Biomedical Research, Jagiellonian University, Gronostajowa 9, Kraków, 30-387, Poland
| | - Konrad Kleszczynski
- Department of Dermatology, Münster, Von-Esmarch-Str. 58, Münster, 48161, Germany
| | - Robert C Tuckey
- School of Molecular Sciences, The University of Western Australia, Perth, WA, 6009, Australia
| | - Russel J Reiter
- Department of Cell Systems and Anatomy, UT Health, Long School of Medicine, San Antonio, TX, 78229, USA
| | | | - Andrzej T Slominski
- Department of Dermatology, University of Alabama at Birmingham, Birmingham, AL, 35294, USA
- Comprehensive Cancer Center, Cancer Chemoprevention Program, University of Alabama at Birmingham, Birmingham, AL, 35294, USA
- VA Medical Center, Birmingham, AL, 35294, USA
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18
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Cunningham K, Anderson DJ, Weissbourd B. Jellyfish for the study of nervous system evolution and function. Curr Opin Neurobiol 2024; 88:102903. [PMID: 39167996 PMCID: PMC11681554 DOI: 10.1016/j.conb.2024.102903] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Revised: 07/17/2024] [Accepted: 07/24/2024] [Indexed: 08/23/2024]
Abstract
Jellyfish comprise a diverse clade of free-swimming predators that arose prior to the Cambrian explosion. They play major roles in ocean ecosystems via a suite of complex foraging, reproductive, and defensive behaviors. These behaviors arise from decentralized, regenerative nervous systems composed of body parts that generate the appropriate part-specific behaviors autonomously following excision. Here, we discuss the organization of jellyfish nervous systems and opportunities afforded by the recent development of a genetically tractable jellyfish model for systems and evolutionary neuroscience.
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Affiliation(s)
- Karen Cunningham
- Department of Biology and The Picower Institute for Learning and Memory, MIT, Cambridge, MA, 02139, USA
| | - David J Anderson
- Division of Biology and Biological Engineering, Caltech, Pasadena, CA 91125, USA; Howard Hughes Medical Institute, Tianqiao and Chrissy Chen Institute for Neuroscience, Caltech, Pasadena, CA 91125, USA.
| | - Brandon Weissbourd
- Department of Biology and The Picower Institute for Learning and Memory, MIT, Cambridge, MA, 02139, USA.
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19
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Sharon O, Ben Simon E, Shah VD, Desel T, Walker MP. The new science of sleep: From cells to large-scale societies. PLoS Biol 2024; 22:e3002684. [PMID: 38976664 PMCID: PMC11230563 DOI: 10.1371/journal.pbio.3002684] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/10/2024] Open
Abstract
In the past 20 years, more remarkable revelations about sleep and its varied functions have arguably been made than in the previous 200. Building on this swell of recent findings, this essay provides a broad sampling of selected research highlights across genetic, molecular, cellular, and physiological systems within the body, networks within the brain, and large-scale social dynamics. Based on this raft of exciting new discoveries, we have come to realize that sleep, in this moment of its evolution, is very much polyfunctional (rather than monofunctional), yet polyfunctional for reasons we had never previously considered. Moreover, these new polyfunctional insights powerfully reaffirm sleep as a critical biological, and thus health-sustaining, requisite. Indeed, perhaps the only thing more impressive than the unanticipated nature of these newly emerging sleep functions is their striking divergence, from operations of molecular mechanisms inside cells to entire group societal dynamics.
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Affiliation(s)
- Omer Sharon
- Department of Psychology, University of California, Berkeley, California, United States of America
- Helen Wills Neuroscience Institute, University of California, Berkeley, California, United States of America
| | - Eti Ben Simon
- Department of Psychology, University of California, Berkeley, California, United States of America
- Helen Wills Neuroscience Institute, University of California, Berkeley, California, United States of America
| | - Vyoma D. Shah
- Department of Psychology, University of California, Berkeley, California, United States of America
- Helen Wills Neuroscience Institute, University of California, Berkeley, California, United States of America
| | - Tenzin Desel
- Department of Psychology, University of California, Berkeley, California, United States of America
- Helen Wills Neuroscience Institute, University of California, Berkeley, California, United States of America
| | - Matthew P. Walker
- Department of Psychology, University of California, Berkeley, California, United States of America
- Helen Wills Neuroscience Institute, University of California, Berkeley, California, United States of America
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20
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Marshall JP, Marinko E, To A, Morejon JL, Joshi R, Shea J, Gibbs AG, Meiselman MR. Circadian regulation of locomotion, respiration, and arousability in adult blacklegged ticks (Ixodes scapularis). Sci Rep 2024; 14:14804. [PMID: 38926516 PMCID: PMC11208436 DOI: 10.1038/s41598-024-65498-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2024] [Accepted: 06/20/2024] [Indexed: 06/28/2024] Open
Abstract
The blacklegged tick, Ixodes scapularis, is an ectoparasitic arachnid and vector for infectious diseases, including Lyme borreliosis. Here, we investigate the diurnal activity and respiration of wild-caught and lab-reared adult ticks with long-term video recording, multi-animal tracking and high-resolution respirometry. We find male and female ticks are in a more active, more arousable state during circadian night. We find respiration is augmented by light, with dark onset triggering more frequent bouts of discontinuous gas exchange and a higher overall volume of CO2 respired. Observed inactivity during the day meets the criteria of sleep: homeostatic in nature, rapidly reversible, a characteristic pose, and reduced arousal threshold. Our findings indicate that blacklegged ticks are in a distinct, heightened state of activity and arousability during night and in dark, suggesting this period may carry higher risk for tick bites and subsequent contraction of tick-borne diseases.
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Affiliation(s)
- Jack P Marshall
- School of Life Sciences, University of Nevada-Las Vegas, Las Vegas, NV, 89154, USA
| | - Emily Marinko
- School of Life Sciences, University of Nevada-Las Vegas, Las Vegas, NV, 89154, USA
| | - Amber To
- School of Life Sciences, University of Nevada-Las Vegas, Las Vegas, NV, 89154, USA
| | - Jilian L Morejon
- School of Life Sciences, University of Nevada-Las Vegas, Las Vegas, NV, 89154, USA
| | - Ritika Joshi
- School of Life Sciences, University of Nevada-Las Vegas, Las Vegas, NV, 89154, USA
| | - Jamien Shea
- Department of Neurobiology and Behavior, Cornell University, Ithaca, NY, 14853, USA
| | - Allen G Gibbs
- School of Life Sciences, University of Nevada-Las Vegas, Las Vegas, NV, 89154, USA
| | - Matthew R Meiselman
- School of Life Sciences, University of Nevada-Las Vegas, Las Vegas, NV, 89154, USA.
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21
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Giez C, Noack C, Sakib E, Hofacker LM, Repnik U, Bramkamp M, Bosch TCG. Satiety controls behavior in Hydra through an interplay of pre-enteric and central nervous system-like neuron populations. Cell Rep 2024; 43:114210. [PMID: 38787723 DOI: 10.1016/j.celrep.2024.114210] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2023] [Revised: 03/11/2024] [Accepted: 04/23/2024] [Indexed: 05/26/2024] Open
Abstract
Hunger and satiety can have an influence on decision-making, sensory processing, and motor behavior by altering the internal state of the brain. This process necessitates the integration of peripheral sensory stimuli into the central nervous system. Here, we show how animals without a central nervous system such as the cnidarian Hydra measure and integrate satiety into neuronal circuits and which specific neuronal populations are involved. We demonstrate that this simple nervous system, previously referred to as diffuse, has an endodermal subpopulation (N4) similar to the enteric nervous system (feeding-associated behavior) and an ectodermal population (N3) that performs central nervous system-like functions (physiology/motor). This view of a supposedly simple nervous system could open an important window into the origin of more complex nervous systems.
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Affiliation(s)
- Christoph Giez
- Zoological Institute, University of Kiel, Am Botanischen Garten 1-9, 24118 Kiel, Germany; Neural Circuits and Evolution Laboratory, Francis Crick Institute, London NW1 1AT, UK.
| | - Christopher Noack
- Zoological Institute, University of Kiel, Am Botanischen Garten 1-9, 24118 Kiel, Germany
| | - Ehsan Sakib
- Zoological Institute, University of Kiel, Am Botanischen Garten 1-9, 24118 Kiel, Germany
| | - Lisa-Marie Hofacker
- Zoological Institute, University of Kiel, Am Botanischen Garten 1-9, 24118 Kiel, Germany
| | - Urska Repnik
- Centrale Microscopy, University of Kiel, Am Botanischen Garten 1-9, 24118 Kiel, Germany
| | - Marc Bramkamp
- Centrale Microscopy, University of Kiel, Am Botanischen Garten 1-9, 24118 Kiel, Germany; Institute for General Microbiology, University of Kiel, Am Botanischen Garten 1-9, 24118 Kiel, Germany
| | - Thomas C G Bosch
- Zoological Institute, University of Kiel, Am Botanischen Garten 1-9, 24118 Kiel, Germany.
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Keleş MF, Sapci AOB, Brody C, Palmer I, Le C, Taştan Ö, Keleş S, Wu MN. FlyVISTA, an Integrated Machine Learning Platform for Deep Phenotyping of Sleep in Drosophila. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.10.30.564733. [PMID: 37961473 PMCID: PMC10635029 DOI: 10.1101/2023.10.30.564733] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/15/2023]
Abstract
Animal behavior depends on internal state. While subtle movements can signify significant changes in internal state, computational methods for analyzing these "microbehaviors" are lacking. Here, we present FlyVISTA, a machine-learning platform to characterize microbehaviors in freely-moving flies, which we use to perform deep phenotyping of sleep. This platform comprises a high-resolution closed-loop video imaging system, coupled with a deep-learning network to annotate 35 body parts, and a computational pipeline to extract behaviors from high-dimensional data. FlyVISTA reveals the distinct spatiotemporal dynamics of sleep-associated microbehaviors in flies. We further show that stimulation of dorsal fan-shaped body neurons induces micromovements, not sleep, whereas activating R5 ring neurons triggers rhythmic proboscis extension followed by persistent sleep. Importantly, we identify a novel microbehavior ("haltere switch") exclusively seen during quiescence that indicates a deeper sleep stage. These findings enable the rigorous analysis of sleep in Drosophila and set the stage for computational analyses of microbehaviors.
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Affiliation(s)
- Mehmet F. Keleş
- Department of Neurology, Johns Hopkins University, Baltimore, MD 21205, USA
| | - Ali Osman Berk Sapci
- Department of Computer Science, Sabanci University, Tuzla, Istanbul, 34956, Turkey
| | - Casey Brody
- Department of Neurology, Johns Hopkins University, Baltimore, MD 21205, USA
| | - Isabelle Palmer
- Department of Neurology, Johns Hopkins University, Baltimore, MD 21205, USA
| | - Christin Le
- Department of Neurology, Johns Hopkins University, Baltimore, MD 21205, USA
| | - Öznur Taştan
- Department of Computer Science, Sabanci University, Tuzla, Istanbul, 34956, Turkey
| | - Sündüz Keleş
- Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI 53706, USA
| | - Mark N. Wu
- Department of Neurology, Johns Hopkins University, Baltimore, MD 21205, USA
- Department of Neuroscience, Johns Hopkins University, Baltimore, MD 21287, USA
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Brown RE. Evo-devo applied to sleep research: an approach whose time has come. SLEEP ADVANCES : A JOURNAL OF THE SLEEP RESEARCH SOCIETY 2024; 5:zpae040. [PMID: 39022590 PMCID: PMC11253433 DOI: 10.1093/sleepadvances/zpae040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2024] [Revised: 06/10/2024] [Indexed: 07/20/2024]
Abstract
Sleep occurs in all animals but its amount, form, and timing vary considerably between species and between individuals. Currently, little is known about the basis for these differences, in part, because we lack a complete understanding of the brain circuitry controlling sleep-wake states and markers for the cell types which can identify similar circuits across phylogeny. Here, I explain the utility of an "Evo-devo" approach for comparative studies of sleep regulation and function as well as for sleep medicine. This approach focuses on the regulation of evolutionary ancient transcription factors which act as master controllers of cell-type specification. Studying these developmental transcription factor cascades can identify novel cell clusters which control sleep and wakefulness, reveal the mechanisms which control differences in sleep timing, amount, and expression, and identify the timepoint in evolution when different sleep-wake control neurons appeared. Spatial transcriptomic studies, which identify cell clusters based on transcription factor expression, will greatly aid this approach. Conserved developmental pathways regulate sleep in mice, Drosophila, and C. elegans. Members of the LIM Homeobox (Lhx) gene family control the specification of sleep and circadian neurons in the forebrain and hypothalamus. Increased Lhx9 activity may account for increased orexin/hypocretin neurons and reduced sleep in Mexican cavefish. Other transcription factor families specify sleep-wake circuits in the brainstem, hypothalamus, and basal forebrain. The expression of transcription factors allows the generation of specific cell types for transplantation approaches. Furthermore, mutations in developmental transcription factors are linked to variation in sleep duration in humans, risk for restless legs syndrome, and sleep-disordered breathing. This paper is part of the "Genetic and other molecular underpinnings of sleep, sleep disorders, and circadian rhythms including translational approaches" collection.
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Affiliation(s)
- Ritchie E Brown
- Department of Psychiatry, VA Boston Healthcare System and Harvard Medical School, West Roxbury, MA, USA
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Omond SET, Lesku JA. Why study sleep in flatworms? J Comp Physiol B 2024; 194:233-239. [PMID: 36899149 PMCID: PMC11233290 DOI: 10.1007/s00360-023-01480-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2022] [Revised: 01/31/2023] [Accepted: 02/23/2023] [Indexed: 03/12/2023]
Abstract
The behaviors that characterize sleep have been observed across a broad range of different species. While much attention has been placed on vertebrates (mostly mammals and birds), the grand diversity of invertebrates has gone largely unexplored. Here, we introduce the intrigue and special value in the study of sleeping platyhelminth flatworms. Flatworms are closely related to annelids and mollusks, and yet are comparatively simple. They lack a circulatory system, respiratory system, endocrine glands, a coelom, and an anus. They retain a central and peripheral nervous system, various sensory systems, and an ability to learn. Flatworms sleep, like other animals, a state which is regulated by prior sleep/wake history and by the neurotransmitter GABA. Furthermore, they possess a remarkable ability to regenerate from a mere fragment of the original animal. The regenerative capabilities of flatworms make them a unique bilaterally symmetric animal to study a link between sleep and neurodevelopment. Lastly, the recent applications of tools for probing the flatworm genome, metabolism, and brain activity make their entrance into the field of sleep research all the more timely.
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Affiliation(s)
- Shauni E T Omond
- School of Agriculture, Biomedicine & Environment, La Trobe University, Melbourne, Australia.
| | - John A Lesku
- School of Agriculture, Biomedicine & Environment, La Trobe University, Melbourne, Australia.
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25
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Norman H, Munson A, Cortese D, Koeck B, Killen SS. The interplay between sleep and ecophysiology, behaviour and responses to environmental change in fish. J Exp Biol 2024; 227:jeb247138. [PMID: 38860399 PMCID: PMC11213526 DOI: 10.1242/jeb.247138] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2024]
Abstract
Evidence of behavioural sleep has been observed in every animal species studied to date, but current knowledge of the behaviour, neurophysiology and ecophysiology associated with sleep is concentrated on mammals and birds. Fish are a hugely diverse group that can offer novel insights into a variety of sleep-related behaviours across environments, but the ecophysiological relevance of sleep in fish has been largely overlooked. Here, we systematically reviewed the literature to assess the current breadth of knowledge on fish sleep, and surveyed the diverse physiological effects and behaviours associated with sleep. We also discuss possible ways in which unstudied external factors may alter sleep behaviours. For example, predation risk may alter sleep patterns, as has been shown in mammalian, avian and reptilian species. Other environmental factors - such as water temperature and oxygen availability - have the potential to alter sleep patterns in fish differently than for terrestrial endotherms. Understanding the ecological influences on sleep in fish is vital, as sleep deprivation has the potential to affect waking behaviour and fitness owing to cognitive and physiological impairments, possibly affecting ecological phenomena and sensitivity to environmental stressors in ways that have not been considered.
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Affiliation(s)
- Helena Norman
- School of Biodiversity, One Health, and Comparative Medicine, University of Glasgow, Glasgow G12 8QQ, UK
| | - Amelia Munson
- School of Biodiversity, One Health, and Comparative Medicine, University of Glasgow, Glasgow G12 8QQ, UK
| | - Daphne Cortese
- School of Biodiversity, One Health, and Comparative Medicine, University of Glasgow, Glasgow G12 8QQ, UK
| | - Barbara Koeck
- School of Biodiversity, One Health, and Comparative Medicine, University of Glasgow, Glasgow G12 8QQ, UK
| | - Shaun S. Killen
- School of Biodiversity, One Health, and Comparative Medicine, University of Glasgow, Glasgow G12 8QQ, UK
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26
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Škop V, Liu N, Xiao C, Stinson E, Chen KY, Hall KD, Piaggi P, Gavrilova O, Reitman ML. Beyond day and night: The importance of ultradian rhythms in mouse physiology. Mol Metab 2024; 84:101946. [PMID: 38657735 PMCID: PMC11070603 DOI: 10.1016/j.molmet.2024.101946] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/05/2024] [Revised: 04/11/2024] [Accepted: 04/18/2024] [Indexed: 04/26/2024] Open
Abstract
Our circadian world shapes much of metabolic physiology. In mice ∼40% of the light and ∼80% of the dark phase time is characterized by bouts of increased energy expenditure (EE). These ultradian bouts have a higher body temperature (Tb) and thermal conductance and contain virtually all of the physical activity and awake time. Bout status is a better classifier of mouse physiology than photoperiod, with ultradian bouts superimposed on top of the circadian light/dark cycle. We suggest that the primary driver of ultradian bouts is a brain-initiated transition to a higher defended Tb of the active/awake state. Increased energy expenditure from brown adipose tissue, physical activity, and cardiac work combine to raise Tb from the lower defended Tb of the resting/sleeping state. Thus, unlike humans, much of mouse metabolic physiology is episodic with large ultradian increases in EE and Tb that correlate with the active/awake state and are poorly aligned with circadian cycling.
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Affiliation(s)
- Vojtěch Škop
- Diabetes, Endocrinology, and Obesity Branch, National Institute of Diabetes and Digestive and Kidney Diseases, NIH, Bethesda, MD 20892, USA; Centre for Experimental Medicine, Institute for Clinical and Experimental Medicine, Prague, Czech Republic; Department of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Czech Republic.
| | - Naili Liu
- Mouse Metabolism Core, National Institute of Diabetes and Digestive and Kidney Diseases, NIH, Bethesda, MD 20892, USA
| | - Cuiying Xiao
- Diabetes, Endocrinology, and Obesity Branch, National Institute of Diabetes and Digestive and Kidney Diseases, NIH, Bethesda, MD 20892, USA
| | - Emma Stinson
- Phoenix Epidemiology and Clinical Research Branch, National Institute of Diabetes and Digestive and Kidney Diseases, NIH, Phoenix, AZ 85016, USA
| | - Kong Y Chen
- Diabetes, Endocrinology, and Obesity Branch, National Institute of Diabetes and Digestive and Kidney Diseases, NIH, Bethesda, MD 20892, USA
| | - Kevin D Hall
- Laboratory of Biological Modeling, National Institute of Diabetes and Digestive and Kidney Diseases, NIH, Bethesda, MD 20892, USA
| | - Paolo Piaggi
- Phoenix Epidemiology and Clinical Research Branch, National Institute of Diabetes and Digestive and Kidney Diseases, NIH, Phoenix, AZ 85016, USA; Department of Information Engineering, University of Pisa, Pisa 56122, Italy
| | - Oksana Gavrilova
- Mouse Metabolism Core, National Institute of Diabetes and Digestive and Kidney Diseases, NIH, Bethesda, MD 20892, USA
| | - Marc L Reitman
- Diabetes, Endocrinology, and Obesity Branch, National Institute of Diabetes and Digestive and Kidney Diseases, NIH, Bethesda, MD 20892, USA.
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27
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Yin D, Zhang B, Chong Y, Ren W, Xu S, Yang G. Adaptive changes in BMAL2 with increased locomotion associated with the evolution of unihemispheric slow-wave sleep in mammals. Sleep 2024; 47:zsae018. [PMID: 38289699 PMCID: PMC11009019 DOI: 10.1093/sleep/zsae018] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Revised: 01/11/2024] [Indexed: 02/01/2024] Open
Abstract
Marine mammals, especially cetaceans, have evolved a very special form of sleep characterized by unihemispheric slow-wave sleep (USWS) and a negligible amount or complete absence of rapid-eye-movement sleep; however, the underlying genetic mechanisms remain unclear. Here, we detected unique, significant selection signatures in basic helix-loop-helix ARNT like 2 (BMAL2; also called ARNTL2), a key circadian regulator, in marine mammal lineages, and identified two nonsynonymous amino acid substitutions (K204E and K346Q) in the important PER-ARNT-SIM domain of cetacean BMAL2 via sequence comparison with other mammals. In vitro assays revealed that these cetacean-specific mutations specifically enhanced the response to E-box-like enhancer and consequently promoted the transcriptional activation of PER2, which is closely linked to sleep regulation. The increased PER2 expression, which was further confirmed both in vitro and in vivo, is beneficial for allowing cetaceans to maintain continuous movement and alertness during sleep. Concordantly, the locomotor activities of zebrafish overexpressing the cetacean-specific mutant bmal2 were significantly higher than the zebrafish overexpressing the wild-type gene. Subsequently, transcriptome analyses revealed that cetacean-specific mutations caused the upregulation of arousal-related genes and the downregulation of several sleep-promoting genes, which is consistent with the need to maintain hemispheric arousal during USWS. Our findings suggest a potential close relationship between adaptive changes in BMAL2 and the remarkable adaptation of USWS and may provide novel insights into the genetic basis of the evolution of animal sleep.
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Affiliation(s)
- Daiqing Yin
- Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou, Guangdong 511458, China
- Jiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, Nanjing 210023, China
| | - Biao Zhang
- Jiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, Nanjing 210023, China
| | - Yujie Chong
- Jiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, Nanjing 210023, China
| | - Wenhua Ren
- Jiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, Nanjing 210023, China
| | - Shixia Xu
- Jiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, Nanjing 210023, China
| | - Guang Yang
- Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou, Guangdong 511458, China
- Jiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, Nanjing 210023, China
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28
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Bitsikas V, Cubizolles F, Schier AF. A vertebrate family without a functional Hypocretin/Orexin arousal system. Curr Biol 2024; 34:1532-1540.e4. [PMID: 38490200 DOI: 10.1016/j.cub.2024.02.022] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Revised: 12/20/2023] [Accepted: 02/12/2024] [Indexed: 03/17/2024]
Abstract
The Hypocretin/Orexin signaling pathway suppresses sleep and promotes arousal, whereas the loss of Hypocretin/Orexin results in narcolepsy, including the involuntary loss of muscle tone (cataplexy).1 Here, we show that the South Asian fish species Chromobotia macracanthus exhibits a sleep-like state during which individuals stop swimming and rest on their side. Strikingly, we discovered that the Hypocretin/Orexin system is pseudogenized in C. macracanthus, but in contrast to Hypocretin-deficient mammals, C. macracanthus does not suffer from sudden behavioral arrests. Similarly, zebrafish mutations in hypocretin/orexin show no evident signs of cataplectic-like episodes. Notably, four additional species in the Botiidae family also lack a functional Hypocretin/Orexin system. These findings identify the first vertebrate family that does not rely on a functional Hypocretin/Orexin system for the regulation of sleep and arousal.
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Affiliation(s)
- Vassilis Bitsikas
- Department of Molecular and Cellular Biology, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA; Biozentrum, University of Basel, Spitalstrasse 41, 4056 Basel, Switzerland
| | - Fabien Cubizolles
- Biozentrum, University of Basel, Spitalstrasse 41, 4056 Basel, Switzerland
| | - Alexander F Schier
- Department of Molecular and Cellular Biology, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA; Biozentrum, University of Basel, Spitalstrasse 41, 4056 Basel, Switzerland.
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29
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Beetz MJ. A perspective on neuroethology: what the past teaches us about the future of neuroethology. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2024; 210:325-346. [PMID: 38411712 PMCID: PMC10995053 DOI: 10.1007/s00359-024-01695-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2023] [Revised: 02/12/2024] [Accepted: 02/13/2024] [Indexed: 02/28/2024]
Abstract
For 100 years, the Journal of Comparative Physiology-A has significantly supported research in the field of neuroethology. The celebration of the journal's centennial is a great time point to appreciate the recent progress in neuroethology and to discuss possible avenues of the field. Animal behavior is the main source of inspiration for neuroethologists. This is illustrated by the huge diversity of investigated behaviors and species. To explain behavior at a mechanistic level, neuroethologists combine neuroscientific approaches with sophisticated behavioral analysis. The rapid technological progress in neuroscience makes neuroethology a highly dynamic and exciting field of research. To summarize the recent scientific progress in neuroethology, I went through all abstracts of the last six International Congresses for Neuroethology (ICNs 2010-2022) and categorized them based on the sensory modalities, experimental model species, and research topics. This highlights the diversity of neuroethology and gives us a perspective on the field's scientific future. At the end, I highlight three research topics that may, among others, influence the future of neuroethology. I hope that sharing my roots may inspire other scientists to follow neuroethological approaches.
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Affiliation(s)
- M Jerome Beetz
- Zoology II, Biocenter, University of Würzburg, 97074, Würzburg, Germany.
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30
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Zaid E, Rainsford FW, Johnsson RD, Valcu M, Vyssotski AL, Meerlo P, Lesku JA. Semelparous marsupials reduce sleep for sex. Curr Biol 2024; 34:606-614.e3. [PMID: 38278151 DOI: 10.1016/j.cub.2023.12.064] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Revised: 11/16/2023] [Accepted: 12/19/2023] [Indexed: 01/28/2024]
Abstract
Sleep is a prominent, seemingly universal animal behavior. Although sleep maintains optimal waking performance, the biological drive to sleep may be incompatible with the life history of some species. In a multi-year study on semelparous marsupials in Australia, we provide the first direct evidence of ecological sleep restriction in a terrestrial mammal. Dusky (Antechinus swainsonii) and agile (A. agilis) antechinus have an unusual reproductive strategy characterized by the synchronous death of all males at the end of their only breeding season. Using accelerometry, electrophysiology, and metabolomics, we show that males, but not females, increase their activity during the breeding season by reducing sleep. In a trade-off between the neurophysiological requirements for sleep and evolutionary necessity for reproduction, strong sexual selection might drive males to sacrifice sleep to increase access to fertile females and ultimately maximize their fitness.
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Affiliation(s)
- Erika Zaid
- School of Agriculture, Biomedicine and Environment, La Trobe University, Melbourne, VIC 3086, Australia.
| | - Frederick W Rainsford
- School of Agriculture, Biomedicine and Environment, La Trobe University, Melbourne, VIC 3086, Australia
| | - Robin D Johnsson
- School of Agriculture, Biomedicine and Environment, La Trobe University, Melbourne, VIC 3086, Australia; Department of Psychology, Franklin and Marshall College, Lancaster, PA 17603, USA
| | - Mihai Valcu
- Department of Ornithology, Max Planck Institute for Biological Intelligence, 82319 Seewiesen, Germany
| | - Alexei L Vyssotski
- Institute of Neuroinformatics, University of Zurich and Swiss Federal Institute of Technology (ETH), 8057 Zurich, Switzerland
| | - Peter Meerlo
- Groningen Institute for Evolutionary Life Sciences, University of Groningen, Groningen 9747 AG, the Netherlands
| | - John A Lesku
- School of Agriculture, Biomedicine and Environment, La Trobe University, Melbourne, VIC 3086, Australia.
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31
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Rayan A, Agarwal A, Samanta A, Severijnen E, van der Meij J, Genzel L. Sleep scoring in rodents: Criteria, automatic approaches and outstanding issues. Eur J Neurosci 2024; 59:526-553. [PMID: 36479908 DOI: 10.1111/ejn.15884] [Citation(s) in RCA: 25] [Impact Index Per Article: 25.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Revised: 11/01/2022] [Accepted: 11/23/2022] [Indexed: 12/13/2022]
Abstract
There is nothing we spend as much time on in our lives as we do sleeping, which makes it even more surprising that we currently do not know why we need to sleep. Most of the research addressing this question is performed in rodents to allow for invasive, mechanistic approaches. However, in contrast to human sleep, we currently do not have shared and agreed upon standards on sleep states in rodents. In this article, we present an overview on sleep stages in humans and rodents and a historical perspective on the development of automatic sleep scoring systems in rodents. Further, we highlight specific issues in rodent sleep that also call into question some of the standards used in human sleep research.
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Affiliation(s)
- Abdelrahman Rayan
- Donders Institute for Brain, Cognition, and Behavior, Radboud University, Nijmegen, The Netherlands
| | - Anjali Agarwal
- Donders Institute for Brain, Cognition, and Behavior, Radboud University, Nijmegen, The Netherlands
| | - Anumita Samanta
- Donders Institute for Brain, Cognition, and Behavior, Radboud University, Nijmegen, The Netherlands
| | - Eva Severijnen
- Donders Institute for Brain, Cognition, and Behavior, Radboud University, Nijmegen, The Netherlands
| | - Jacqueline van der Meij
- Donders Institute for Brain, Cognition, and Behavior, Radboud University, Nijmegen, The Netherlands
| | - Lisa Genzel
- Donders Institute for Brain, Cognition, and Behavior, Radboud University, Nijmegen, The Netherlands
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32
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Adams GJ, O'Brien PA. The unified theory of sleep: Eukaryotes endosymbiotic relationship with mitochondria and REM the push-back response for awakening. Neurobiol Sleep Circadian Rhythms 2023; 15:100100. [PMID: 37484687 PMCID: PMC10362302 DOI: 10.1016/j.nbscr.2023.100100] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2023] [Revised: 06/22/2023] [Accepted: 06/26/2023] [Indexed: 07/25/2023] Open
Abstract
The Unified Theory suggests that sleep is a process that developed in eukaryotic animals from a relationship with an endosymbiotic bacterium. Over evolutionary time the bacterium evolved into the modern mitochondrion that continues to exert an effect on sleep patterns, e.g. the bacterium Wolbachia establishes an endosymbiotic relationship with Drosophila and many other species of insects and is able to change the host's behaviour by making it sleep. The hypothesis is supported by other host-parasite relationships, e.g., Trypanosoma brucei which causes day-time sleepiness and night-time insomnia in humans and cattle. For eukaryotes such as Monocercomonoids that don't contain mitochondria we find no evidence of them sleeping. Mitochondria produce the neurotransmitter gamma aminobutyric acid (GABA), and ornithine a precursor of the neurotransmitter GABA, together with substances such as 3,4dihydroxy phenylalanine (DOPA) a precursor for the neurotransmitter dopamine: These substances have been shown to affect the sleep/wake cycles in animals such as Drosophilia and Hydra. Eukaryote animals have traded the very positive side of having mitochondria providing aerobic respiration for them with the negative side of having to sleep. NREM (Quiet sleep) is the process endosymbionts have imposed upon their host eukaryotes and REM (Active sleep) is the push-back adaptation of eukaryotes with brains, returning to wakefulness.
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Affiliation(s)
| | - Philip A. O'Brien
- College of Science, Health, Engineering and Education, Murdoch University, WA, Australia
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33
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Lewbart GA, Zachariah TT. Aquatic and Terrestrial Invertebrate Welfare. Animals (Basel) 2023; 13:3375. [PMID: 37958134 PMCID: PMC10649180 DOI: 10.3390/ani13213375] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Revised: 10/14/2023] [Accepted: 10/20/2023] [Indexed: 11/15/2023] Open
Abstract
Invertebrates are a diverse group of animals that make up the majority of the animal kingdom and encompass a wide array of species with varying adaptations and characteristics. Invertebrates are found in nearly all of the world's habitats, including aquatic, marine, and terrestrial environments. There are many misconceptions about invertebrate sentience, welfare requirements, the need for environmental enrichment, and overall care and husbandry for this amazing group of animals. This review addresses these topics and more for a select group of invertebrates with biomedical, economical, display, and human companionship importance.
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Affiliation(s)
- Gregory A. Lewbart
- College of Veterinary Medicine, NC State University, Raleigh, NC 27607, USA
| | - Trevor T. Zachariah
- Brevard Zoo|Sea Turtle Healing Center, 8225 North Wickham Road, Melbourne, FL 32940, USA;
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34
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Chowdhury B, Abhilash L, Ortega A, Liu S, Shafer O. Homeostatic control of deep sleep and molecular correlates of sleep pressure in Drosophila. eLife 2023; 12:e91355. [PMID: 37906092 PMCID: PMC10642965 DOI: 10.7554/elife.91355] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Accepted: 10/22/2023] [Indexed: 11/02/2023] Open
Abstract
Homeostatic control of sleep is typically addressed through mechanical stimulation-induced forced wakefulness and the measurement of subsequent increases in sleep. A major confound attends this approach: biological responses to deprivation may reflect a direct response to the mechanical insult rather than to the loss of sleep. Similar confounds accompany all forms of sleep deprivation and represent a major challenge to the field. Here, we describe a new paradigm for sleep deprivation in Drosophila that fully accounts for sleep-independent effects. Our results reveal that deep sleep states are the primary target of homeostatic control and establish the presence of multi-cycle sleep rebound following deprivation. Furthermore, we establish that specific deprivation of deep sleep states results in state-specific homeostatic rebound. Finally, by accounting for the molecular effects of mechanical stimulation during deprivation experiments, we show that serotonin levels track sleep pressure in the fly's central brain. Our results illustrate the critical need to control for sleep-independent effects of deprivation when examining the molecular correlates of sleep pressure and call for a critical reassessment of work that has not accounted for such non-specific effects.
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Affiliation(s)
- Budhaditya Chowdhury
- The Advanced Science Research Center, The City University of New York; The Graduate Center at the City University of New YorkNew YorkUnited States
| | - Lakshman Abhilash
- The Advanced Science Research Center, The City University of New York; The Graduate Center at the City University of New YorkNew YorkUnited States
| | - Antonio Ortega
- VIB-KU Leuven Center for Brain & Disease ResearchLeuvenBelgium
| | - Sha Liu
- VIB-KU Leuven Center for Brain & Disease ResearchLeuvenBelgium
| | - Orie Shafer
- The Advanced Science Research Center, The City University of New York; The Graduate Center at the City University of New YorkNew YorkUnited States
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35
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Koutsoumparis A, Busack I, Chen CK, Hayashi Y, Braeckman BP, Meierhofer D, Bringmann H. Reverse genetic screening during L1 arrest reveals a role of the diacylglycerol kinase 1 gene dgk-1 and sphingolipid metabolism genes in sleep regulation. Genetics 2023; 225:iyad124. [PMID: 37682641 DOI: 10.1093/genetics/iyad124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2022] [Accepted: 07/01/2023] [Indexed: 09/10/2023] Open
Abstract
Sleep is a fundamental state of behavioral quiescence and physiological restoration. Sleep is controlled by environmental conditions, indicating a complex regulation of sleep by multiple processes. Our knowledge of the genes and mechanisms that control sleep during various conditions is, however, still incomplete. In Caenorhabditis elegans, sleep is increased when development is arrested upon starvation. Here, we performed a reverse genetic sleep screen in arrested L1 larvae for genes that are associated with metabolism. We found over 100 genes that are associated with a reduced sleep phenotype. Enrichment analysis revealed sphingolipid metabolism as a key pathway that controls sleep. A strong sleep loss was caused by the loss of function of the diacylglycerol kinase 1 gene, dgk-1, a negative regulator of synaptic transmission. Rescue experiments indicated that dgk-1 is required for sleep in cholinergic and tyraminergic neurons. The Ring Interneuron S (RIS) neuron is crucial for sleep in C. elegans and activates to induce sleep. RIS activation transients were abolished in dgk-1 mutant animals. Calcium transients were partially rescued by a reduction-of-function mutation of unc-13, suggesting that dgk-1 might be required for RIS activation by limiting synaptic vesicle release. dgk-1 mutant animals had impaired L1 arrest survival and dampened expression of the protective heat shock factor gene hsp-12.6. These data suggest that dgk-1 impairment causes broad physiological deficits. Microcalorimetry and metabolomic analyses of larvae with impaired RIS showed that RIS is broadly required for energy conservation and metabolic control, including for the presence of sphingolipids. Our data support the notion that metabolism broadly influences sleep and that sleep is associated with profound metabolic changes. We thus provide novel insights into the interplay of lipids and sleep and provide a rich resource of mutants and metabolic pathways for future sleep studies.
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Affiliation(s)
- Anastasios Koutsoumparis
- Chair of Cellular Circuits and Systems, Biotechnology Center (BIOTEC), Center for Molecular and Cellular Bioengineering (CMCB), Technische Universität Dresden, Am Tatzberg 47/49, Dresden, Saxony 01307, Germany
| | - Inka Busack
- Chair of Cellular Circuits and Systems, Biotechnology Center (BIOTEC), Center for Molecular and Cellular Bioengineering (CMCB), Technische Universität Dresden, Am Tatzberg 47/49, Dresden, Saxony 01307, Germany
| | - Chung-Kuan Chen
- International Institute for Integrative Sleep Medicine (WPI-IIIS), University of Tsukuba, Tsukuba, Ibaraki 305-8575, Japan
| | - Yu Hayashi
- International Institute for Integrative Sleep Medicine (WPI-IIIS), University of Tsukuba, Tsukuba, Ibaraki 305-8575, Japan
| | - Bart P Braeckman
- Laboratory of Aging Physiology and Molecular Evolution, Department of Biology, Ghent University, 9000 Ghent, Belgium
| | - David Meierhofer
- Mass Spectrometry Facility, Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany
| | - Henrik Bringmann
- Chair of Cellular Circuits and Systems, Biotechnology Center (BIOTEC), Center for Molecular and Cellular Bioengineering (CMCB), Technische Universität Dresden, Am Tatzberg 47/49, Dresden, Saxony 01307, Germany
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36
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Sonti S, Littleton SH, Pahl MC, Zimmerman AJ, Chesi A, Palermo J, Lasconi C, Brown EB, Pippin JA, Wells AD, Doldur-Balli F, Pack AI, Gehrman PR, Keene AC, Grant SFA. Perturbation of the insomnia WDR90 GWAS locus pinpoints rs3752495 as a causal variant influencing distal expression of neighboring gene, PIG-Q. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.08.17.553739. [PMID: 37645863 PMCID: PMC10462147 DOI: 10.1101/2023.08.17.553739] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 08/31/2023]
Abstract
Although genome wide association studies (GWAS) have been crucial for the identification of loci associated with sleep traits and disorders, the method itself does not directly uncover the underlying causal variants and corresponding effector genes. The overwhelming majority of such variants reside in non-coding regions and are therefore presumed to impact the activity of cis-regulatory elements, such as enhancers. Our previously reported 'variant-to-gene mapping' effort in human induced pluripotent stem cell (iPSC)-derived neural progenitor cells (NPCs), combined with validation in both Drosophila and zebrafish, implicated PIG-Q as a functionally relevant gene at the insomnia 'WDR90' locus. However, importantly that effort did not characterize the corresponding underlying causal variant at this GWAS signal. Specifically, our genome-wide ATAC-seq and high-resolution promoter-focused Capture C datasets generated in this cell setting brought our attention to a shortlist of three tightly neighboring single nucleotide polymorphisms (SNPs) in strong linkage disequilibrium in a candidate intronic enhancer region of WDR90 that contacted the open PIG-Q promoter. The objective of this study was to investigate the influence of the proxy SNPs collectively and then individually on PIG-Q modulation and to pinpoint the causal "regulatory" variant among the three SNPs. Starting at a gross level perturbation, deletion of the entire region harboring all three SNPs in human iPSC-derived neural progenitor cells via CRISPR-Cas9 editing and subsequent RNA sequencing revealed expression changes in specific PIG-Q transcripts. Results from more refined individual luciferase reporter assays for each of the three SNPs in iPSCs revealed that the intronic region with the rs3752495 risk allele induced a ~2.5-fold increase in luciferase expression (n=10). Importantly, rs3752495 also exhibited an allele specific effect, with the risk allele increasing the luciferase expression by ~2-fold compared to the non-risk allele. In conclusion, our variant-to-function approach and subsequent in vitro validation implicates rs3752495 as a causal insomnia risk variant embedded at the WDR90-PIG-Q locus.
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Affiliation(s)
- Shilpa Sonti
- Center for Spatial and Functional Genomics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
| | - Sheridan H Littleton
- Center for Spatial and Functional Genomics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Cell and Molecular Biology Graduate Group, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA
- Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Matthew C Pahl
- Center for Spatial and Functional Genomics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
| | - Amber J Zimmerman
- Center for Spatial and Functional Genomics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Division of Sleep Medicine, Department of Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Alessandra Chesi
- Center for Spatial and Functional Genomics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Department of Pathology and Laboratory Medicine University of Pennsylvania Perelman School of Medicine Philadelphia PA USA
| | - Justin Palermo
- Department of Biology, Texas A&M University, College Station, TX, USA
| | - Chiara Lasconi
- Center for Spatial and Functional Genomics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
| | - Elizabeth B Brown
- Division of Sleep Medicine, Department of Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - James A Pippin
- Center for Spatial and Functional Genomics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
| | - Andrew D Wells
- Center for Spatial and Functional Genomics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Department of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA
| | - Fusun Doldur-Balli
- Division of Sleep Medicine, Department of Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Allan I Pack
- Division of Sleep Medicine, Department of Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Phillip R Gehrman
- Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Alex C Keene
- Department of Biology, Texas A&M University, College Station, TX, USA
| | - S F A Grant
- Center for Spatial and Functional Genomics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA
- Department of Pediatrics, The University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, 19104, USA
- Divisions of Human Genetics and Endocrinology & Diabetes, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
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37
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Hartmann C, Kempf A. Mitochondrial control of sleep. Curr Opin Neurobiol 2023; 81:102733. [PMID: 37390796 DOI: 10.1016/j.conb.2023.102733] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2023] [Revised: 05/03/2023] [Accepted: 05/03/2023] [Indexed: 07/02/2023]
Abstract
The function of sleep remains one of biology's biggest mysteries. A solution to this problem is likely to come from a better understanding of sleep homeostasis, and in particular of the cellular and molecular processes that sense sleep need and settle sleep debt. Here, we highlight recent work in the fruit fly showing that changes in the mitochondrial redox state of sleep-promoting neurons lie at the heart of a homeostatic sleep-regulatory mechanism. Since the function of homeostatically controlled behaviours is often linked to the regulated variable itself, these findings corroborate with the hypothesis that sleep serves a metabolic function.
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Affiliation(s)
- Celina Hartmann
- Biozentrum, University of Basel, CH-4056, Basel, Switzerland
| | - Anissa Kempf
- Biozentrum, University of Basel, CH-4056, Basel, Switzerland.
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38
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Gengel E, Kuplik Z, Angel D, Heifetz E. A physics-based model of swarming jellyfish. PLoS One 2023; 18:e0288378. [PMID: 37428796 DOI: 10.1371/journal.pone.0288378] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Accepted: 06/23/2023] [Indexed: 07/12/2023] Open
Abstract
We propose a model for the structure formation of jellyfish swimming based on active Brownian particles. We address the phenomena of counter-current swimming, avoidance of turbulent flow regions and foraging. We motivate corresponding mechanisms from observations of jellyfish swarming reported in the literature and incorporate them into the generic modelling framework. The model characteristics is tested in three paradigmatic flow environments.
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Affiliation(s)
- Erik Gengel
- Department of Geophysics, Porter School of the Environment and Earth Sciences, Tel Aviv University, Tel Aviv, Israel
| | - Zafrir Kuplik
- The Steinhardt Museum of Natural History, Tel Aviv University, Tel Aviv, Israel
- The Leon Recanati Institute for Maritime Studies, University of Haifa, Mount Carmel, Haifa, Israel
| | - Dror Angel
- The Leon Recanati Institute for Maritime Studies, University of Haifa, Mount Carmel, Haifa, Israel
| | - Eyal Heifetz
- Department of Geophysics, Porter School of the Environment and Earth Sciences, Tel Aviv University, Tel Aviv, Israel
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39
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Yeganegi H, Ondracek JM. Multi-channel recordings reveal age-related differences in the sleep of juvenile and adult zebra finches. Sci Rep 2023; 13:8607. [PMID: 37244927 DOI: 10.1038/s41598-023-35160-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2022] [Accepted: 05/13/2023] [Indexed: 05/29/2023] Open
Abstract
Despite their phylogenetic differences and distinct pallial structures, mammals and birds show similar electroencephalography (EEG) traces during sleep, consisting of distinct rapid eye movement (REM) sleep and slow wave sleep (SWS) stages. Studies in human and a limited number of other mammalian species show that this organization of sleep into interleaving stages undergoes radical changes during lifetime. Do these age-dependent variations in sleep patterns also occur in the avian brain? Does vocal learning have an effect on sleep patterns in birds? To answer these questions, we recorded multi-channel sleep EEG from juvenile and adult zebra finches for several nights. Whereas adults spent more time in SWS and REM sleep, juveniles spent more time in intermediate sleep (IS). The amount of IS was significantly larger in male juveniles engaged in vocal learning compared to female juveniles, which suggests that IS could be important for vocal learning. In addition, we observed that functional connectivity increased rapidly during maturation of young juveniles, and was stable or declined at older ages. Synchronous activity during sleep was larger for recording sites in the left hemisphere for both juveniles and adults, and generally intra-hemispheric synchrony was larger than inter-hemispheric synchrony during sleep. A graph theory analysis revealed that in adults, highly correlated EEG activity tended to be distributed across fewer networks that were spread across a wider area of the brain, whereas in juveniles, highly correlated EEG activity was distributed across more numerous, albeit smaller, networks in the brain. Overall, our results reveal that significant changes occur in the neural signatures of sleep during maturation in an avian brain.
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Affiliation(s)
- Hamed Yeganegi
- Technical University of Munich, Liesel-Beckmann-Str. 4, 85354, Freising-Weihenstephan, Germany
- Graduate School of Systemic Neurosciences, Ludwig-Maximilians-University Munich, Großhaderner Str. 2, 82152, Planegg, Germany
| | - Janie M Ondracek
- Technical University of Munich, Liesel-Beckmann-Str. 4, 85354, Freising-Weihenstephan, Germany.
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40
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Thoma V, Sakai S, Nagata K, Ishii Y, Maruyama S, Abe A, Kondo S, Kawata M, Hamada S, Deguchi R, Tanimoto H. On the origin of appetite: GLWamide in jellyfish represents an ancestral satiety neuropeptide. Proc Natl Acad Sci U S A 2023; 120:e2221493120. [PMID: 37011192 PMCID: PMC10104569 DOI: 10.1073/pnas.2221493120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2023] [Accepted: 01/20/2023] [Indexed: 04/05/2023] Open
Abstract
Food intake is regulated by internal state. This function is mediated by hormones and neuropeptides, which are best characterized in popular model species. However, the evolutionary origins of such feeding-regulating neuropeptides are poorly understood. We used the jellyfish Cladonema to address this question. Our combined transcriptomic, behavioral, and anatomical approaches identified GLWamide as a feeding-suppressing peptide that selectively inhibits tentacle contraction in this jellyfish. In the fruit fly Drosophila, myoinhibitory peptide (MIP) is a related satiety peptide. Surprisingly, we found that GLWamide and MIP were fully interchangeable in these evolutionarily distant species for feeding suppression. Our results suggest that the satiety signaling systems of diverse animals share an ancient origin.
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Affiliation(s)
- Vladimiros Thoma
- Graduate School of Life Sciences, Tohoku University, Sendai980-8577, Japan
- Department of Biology, Miyagi University of Education, Aoba-ku, Sendai980-0845, Japan
| | - Shuhei Sakai
- Graduate School of Life Sciences, Tohoku University, Sendai980-8577, Japan
| | - Koki Nagata
- Graduate School of Life Sciences, Tohoku University, Sendai980-8577, Japan
| | - Yuu Ishii
- Department of Biology, Miyagi University of Education, Aoba-ku, Sendai980-0845, Japan
- Department of Ecological Developmental Adaptability Life Sciences, Graduate School of Life Sciences, Tohoku University, Aobaku, Sendai980-8578, Japan
| | - Shinichiro Maruyama
- Department of Ecological Developmental Adaptability Life Sciences, Graduate School of Life Sciences, Tohoku University, Aobaku, Sendai980-8578, Japan
- Department of Life Science, Graduate School of Humanities and Sciences, Ochanomizu University, Bunkyo-ku, Tokyo112-8610, Japan
| | - Ayako Abe
- Graduate School of Life Sciences, Tohoku University, Sendai980-8577, Japan
| | - Shu Kondo
- Department of Biological Science and Technology, Faculty of Advanced Engineering, Tokyo University of Science, Katsushika-ku, Tokyo125-8585, Japan
- Invertebrate Genetics Laboratory, National Institute of Genetics, Mishima, Shizuoka411-8540, Japan
| | - Masakado Kawata
- Department of Ecological Developmental Adaptability Life Sciences, Graduate School of Life Sciences, Tohoku University, Aobaku, Sendai980-8578, Japan
| | - Shun Hamada
- Department of Food and Health Sciences, International College of Arts and Sciences, Fukuoka Women’s University, Fukuoka813-8529, Japan
| | - Ryusaku Deguchi
- Department of Biology, Miyagi University of Education, Aoba-ku, Sendai980-0845, Japan
| | - Hiromu Tanimoto
- Graduate School of Life Sciences, Tohoku University, Sendai980-8577, Japan
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41
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rdgB knockdown in neurons reduced nocturnal sleep in Drosophila melanogaster. Biochem Biophys Res Commun 2023; 643:24-29. [PMID: 36586155 DOI: 10.1016/j.bbrc.2022.12.043] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Accepted: 12/15/2022] [Indexed: 12/23/2022]
Abstract
Recent studies revealed behaviorally defined sleep is conserved across broad species from insect to human. For evolutional analysis, it is critical to determine how homologous genes regulate the homologous function among species. Drosophila melanogaster shares numerous sleep related genes with mammals including Sik3, salt-inducible kinase 3, whose mutation caused long sleep both in mouse and fruit fly. The Drosophila rdgB (retinal degeneration B) encodes a membrane-associated phosphatidylinositol transfer protein and its mutation caused light-induced degeneration of photoreceptor cells. rdgB mutation also impaired phototransduction and olfactory behavior, indicating rdgB is involved in the normal neural transmission. Mammalian rdgB homologue, Pitpnm2 (phosphatidylinositol transfer protein membrane-associated 2) was discovered as one of SNIPPs (sleep-need index phosphoproteins), suggesting its role in sleep. Here, we show that rdgB is involved in sleep regulation in Drosophila. Pan-neuronal and mushroom body (MB) specific rdgB knockdown decreased nocturnal sleep. MB neurons play a dominant role, since the rescue of rdgB expression only in MB neurons in pan-neuronal knockdown reversed the sleep reducing effect of rdgB knockdown. These results revealed the sleep-related function of rdgB in Drosophila which may be conserved across species.
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42
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Rattenborg NC, Ungurean G. The evolution and diversification of sleep. Trends Ecol Evol 2023; 38:156-170. [PMID: 36411158 DOI: 10.1016/j.tree.2022.10.004] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2022] [Revised: 10/17/2022] [Accepted: 10/24/2022] [Indexed: 11/19/2022]
Abstract
The evolutionary origins of sleep and its sub-states, rapid eye movement (REM) and non-REM (NREM) sleep, found in mammals and birds, remain a mystery. Although the discovery of a single type of sleep in jellyfish suggests that sleep evolved much earlier than previously thought, it is unclear when and why sleep diversified into multiple types of sleep. Intriguingly, multiple types of sleep have recently been found in animals ranging from non-avian reptiles to arthropods to cephalopods. Although there are similarities between these states and those found in mammals and birds, notable differences also exist. The diversity in the way sleep is expressed confounds attempts to trace the evolution of sleep states, but also serves as a rich resource for exploring the functions of sleep.
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Affiliation(s)
- Niels C Rattenborg
- Max Planck Institute for Biological Intelligence (in foundation), Seewiesen, Germany.
| | - Gianina Ungurean
- Max Planck Institute for Biological Intelligence (in foundation), Seewiesen, Germany
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43
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Mishra S, Sharma N, Singh SK, Lone SR. Peculiar sleep features in sympatric species may contribute to the temporal segregation. J Comp Physiol B 2023; 193:57-70. [PMID: 36271924 DOI: 10.1007/s00360-022-01463-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2021] [Revised: 09/13/2022] [Accepted: 09/20/2022] [Indexed: 01/24/2023]
Abstract
Sleep is conserved in the animal kingdom and plays a pivotal role in the adaptation of species. Sleep in Drosophila melanogaster is defined as any continuous 5 min of quiescence, shows a prominent siesta, and consolidated nighttime sleep. Here, we analyzed the sleep of two other species D. malerkotliana (DMK) and D. ananassae (DA), and compared it with D. melanogaster (DM). The DMK males and females have siesta like DM. However, unlike DM, flies continue to sleep beyond siesta till the evening. DA has a less prominent siesta compared to DM and DMK. In the morning, DA took a longer time to respond to the lights ON and continued to sleep for at least half an hour. The nighttime sleep of the DA flies is higher than the other two species. Average length of sleep episode is three times more than that of DM and DMK with few wake episodes. Thus, the nighttime sleep of DA males and females is deep and needs exposure to more potent stimuli to wake up relative to the other two species. DA males and females show higher sleep rebound than the other two species, suggesting the robustness of sleep homeostasis. Although total sleep of DMK and DA is similar, DA is a day-active species with highly consolidated night sleep. DMK, like DM, is a crepuscular species with a midday siesta. Thus, our results suggest that temporal partitioning of sleep, in sympatric species may contribute to temporal segregation.
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Affiliation(s)
- Sukriti Mishra
- Department of Zoology, Central University of Punjab, Bathinda, Punjab, 151001, India
| | - Nisha Sharma
- Department of Zoology, Central University of Punjab, Bathinda, Punjab, 151001, India
| | - Sunil Kumar Singh
- Department of Zoology, Central University of Punjab, Bathinda, Punjab, 151001, India
| | - Shahnaz Rahman Lone
- Department of Zoology, Central University of Punjab, Bathinda, Punjab, 151001, India.
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44
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Duruz J, Sprecher SG. Evolution and Origins of Nervous Systems. Neurogenetics 2023. [DOI: 10.1007/978-3-031-07793-7_8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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45
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Diering GH. Remembering and forgetting in sleep: Selective synaptic plasticity during sleep driven by scaling factors Homer1a and Arc. Neurobiol Stress 2022; 22:100512. [PMID: 36632309 PMCID: PMC9826981 DOI: 10.1016/j.ynstr.2022.100512] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2022] [Revised: 12/01/2022] [Accepted: 12/29/2022] [Indexed: 01/02/2023] Open
Abstract
Sleep is a conserved and essential process that supports learning and memory. Synapses are a major target of sleep function and a locus of sleep need. Evidence in the literature suggests that the need for sleep has a cellular or microcircuit level basis, and that sleep need can accumulate within localized brain regions as a function of waking activity. Activation of sleep promoting kinases and accumulation of synaptic phosphorylation was recently shown to be part of the molecular basis for the localized sleep need. A prominent hypothesis in the field suggests that some benefits of sleep are mediated by a broad but selective weakening, or scaling-down, of synaptic strength during sleep in order to offset increased excitability from synaptic potentiation during wake. The literature also shows that synapses can be strengthened during sleep, raising the question of what molecular mechanisms may allow for selection of synaptic plasticity types during sleep. Here I describe mechanisms of action of the scaling factors Arc and Homer1a in selective plasticity and links with sleep need. Arc and Homer1a are induced in neurons in response to waking neuronal activity and accumulate with time spent awake. I suggest that during sleep, Arc and Homer1a drive broad weakening of synapses through homeostatic scaling-down, but in a manner that is sensitive to the plasticity history of individual synapses, based on patterned phosphorylation of synaptic proteins. Therefore, Arc and Homer1a may offer insights into the intricate links between a cellular basis of sleep need and memory consolidation during sleep.
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Affiliation(s)
- Graham H. Diering
- Department of Cell Biology and Physiology and the UNC Neuroscience Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA,Carolina Institute for Developmental Disabilities, USA,111 Mason Farm Road, 5200 Medical and Biomolecular Research Building, Chapel Hill, NC, 27599-7545, USA.
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46
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Stanton D, Justin HS, Reitzel AM. Step in Time: Conservation of Circadian Clock Genes in Animal Evolution. Integr Comp Biol 2022; 62:1503-1518. [PMID: 36073444 DOI: 10.1093/icb/icac140] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Revised: 09/01/2022] [Accepted: 09/02/2022] [Indexed: 01/05/2023] Open
Abstract
Over the past few decades, the molecular mechanisms responsible for circadian phenotypes of animals have been studied in increasing detail in mammals, some insects, and other invertebrates. Particular circadian proteins and their interactions are shared across evolutionary distant animals, resulting in a hypothesis for the canonical circadian clock of animals. As the number of species for which the circadian clockwork has been described increases, the circadian clock in animals driving cyclical phenotypes becomes less similar. Our focus in this review is to develop and synthesize the current literature to better understand the antiquity and evolution of the animal circadian clockwork. Here, we provide an updated understanding of circadian clock evolution in animals, largely through the lens of conserved genes characterized in the circadian clock identified in bilaterian species. These comparisons reveal extensive variation within the likely composition of the core clock mechanism, including losses of many genes, and that the ancestral clock of animals does not equate to the bilaterian clock. Despite the loss of these core genes, these species retain circadian behaviors and physiology, suggesting novel clocks have evolved repeatedly. Additionally, we highlight highly conserved cellular processes (e.g., cell division, nutrition) that intersect with the circadian clock of some animals. The conservation of these processes throughout the animal tree remains essentially unknown, but understanding their role in the evolution and maintenance of the circadian clock will provide important areas for future study.
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Affiliation(s)
- Daniel Stanton
- Department of Animal Sciences, University of Florida, Gainesville, FL 32608, USA
| | - Hannah S Justin
- Department of Biological Sciences, University of North Carolina at Charlotte, 9201 University City Blvd., Charlotte NC 28223, USA
| | - Adam M Reitzel
- Department of Biological Sciences, University of North Carolina at Charlotte, 9201 University City Blvd., Charlotte NC 28223, USA
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47
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Wang Y, Minami Y, Ode KL, Ueda HR. The role of calcium and CaMKII in sleep. Front Syst Neurosci 2022; 16:1059421. [PMID: 36618010 PMCID: PMC9815122 DOI: 10.3389/fnsys.2022.1059421] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2022] [Accepted: 12/05/2022] [Indexed: 12/24/2022] Open
Abstract
Sleep is an evolutionarily conserved phenotype shared by most of the animals on the planet. Prolonged wakefulness will result in increased sleep need or sleep pressure. However, its mechanisms remain elusive. Recent findings indicate that Ca2+ signaling, known to control diverse physiological functions, also regulates sleep. This review intends to summarize research advances in Ca2+ and Ca2+/calmodulin-dependent protein kinase II (CaMKII) in sleep regulation. Significant changes in sleep phenotype have been observed through calcium-related channels, receptors, and pumps. Mathematical modeling for neuronal firing patterns during NREM sleep suggests that these molecules compose a Ca2+-dependent hyperpolarization mechanism. The intracellular Ca2+ may then trigger sleep induction and maintenance through the activation of CaMKII, one of the sleep-promoting kinases. CaMKII and its multisite phosphorylation status may provide a link between transient calcium dynamics typically observed in neurons and sleep-wake dynamics observed on the long-time scale.
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Affiliation(s)
- Yuyang Wang
- Department of Systems Pharmacology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
| | - Yoichi Minami
- Department of Systems Pharmacology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
| | - Koji L. Ode
- Department of Systems Pharmacology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
| | - Hiroki R. Ueda
- Department of Systems Pharmacology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan,Laboratory for Synthetic Biology, RIKEN Center for Biosystems Dynamics Research, Suita, Japan,*Correspondence: Hiroki R. Ueda,
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48
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Flensburg SB, Garm A, Funch P. The contraction-expansion behaviour in the demosponge Tethya wilhelma is light controlled and follows a diurnal rhythm. J Exp Biol 2022; 225:286159. [PMID: 36546534 DOI: 10.1242/jeb.244751] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2022] [Accepted: 11/29/2022] [Indexed: 12/12/2022]
Abstract
Sponges (phylum Porifera) are metazoans which lack muscles and nerve cells, yet perform coordinated behaviours such as whole-body contractions. Previous studies indicate diurnal variability in both the number of contractions and the expression of circadian clock genes. Here, we show that diurnal patterns are present in the contraction-expansion behaviour of the demosponge Tethya wilhelma, by using infrared videography and a simulated night/day cycle including sunrise and sunset mimics. In addition, we show that this behaviour is at least strongly influenced by ambient light intensity and therefore indicates light-sensing capabilities in this sponge species. This is supported by our finding that T. wilhelma consistently contracts at sunrise, and that this pattern disappears both when the sponge is kept in constant darkness and when it is in constant light.
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Affiliation(s)
- Sarah B Flensburg
- Department of Biology, Aarhus University, Ny Munkegade 114-116, 8000 Aarhus C, Denmark
| | - Anders Garm
- Marine Biological Section, University of Copenhagen, Universitetsparken 4, 2100 Copenhagen Ø, Denmark
| | - Peter Funch
- Department of Biology, Aarhus University, Ny Munkegade 114-116, 8000 Aarhus C, Denmark
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49
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Lee H, Lim C. Circadian gating of light-induced arousal in Drosophila sleep. J Neurogenet 2022:1-11. [DOI: 10.1080/01677063.2022.2151596] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
Affiliation(s)
- Hoyeon Lee
- Department of Biological Sciences, Ulsan National Institute of Science and Technology (UNIST), Ulsan, Republic of Korea
| | - Chunghun Lim
- Department of Biological Sciences, Ulsan National Institute of Science and Technology (UNIST), Ulsan, Republic of Korea
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50
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Birch JN, Vanderheyden WM. The Molecular Relationship between Stress and Insomnia. Adv Biol (Weinh) 2022; 6:e2101203. [PMID: 35822937 DOI: 10.1002/adbi.202101203] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2021] [Revised: 04/15/2022] [Indexed: 01/28/2023]
Abstract
The bi-directional relationship between sleep and stress has been actively researched as sleep disturbances and stress have become increasingly common in society. Interestingly, the brain and underlying neural circuits important for sleep regulation may respond uniquely to stress that leads to post-traumatic stress disorder (PTSD) and stress that does not. In stress that does not lead to PTSD, the hypothalamic-pituitary-adrenal axis (HPA) pathway is activated normally that results in sympathetic nervous system activation that allows the brain and body to return to baseline functioning. However, exposure to stress that leads to PTSD, causes enhanced negative feedback of this same pathway and results in long-term physiological and psychological changes. In this review, how stress regulates glucocorticoid signaling pathways in brain glial cells called astrocytes, and then mediates stress-induced insomnia are examined. Astrocytes are critical sleep regulatory cells and their connections to sleep and stress due to disturbed glucocorticoid signaling provide a novel mechanism to explain how stress leads to insomnia. This review will examine the interactions of stress neurobiology, astrocytes, sleep, and glucocorticoid signaling pathways and will examine the how stress that leads to PTSD and stress that does not impacts sleep-regulatory processes.
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Affiliation(s)
- Jasmine N Birch
- WSU Health Sciences Spokane, Elson S. Floyd College of Medicine, Department of Translational Medicine and Physiology, 412 E. Spokane Falls Blvd, Spokane, WA, 99 202, USA
| | - William M Vanderheyden
- WSU Health Sciences Spokane, Elson S. Floyd College of Medicine, Department of Translational Medicine and Physiology, Pharmaceutical and Biomedical Sciences Building, Room 213/Lab 230, 412 E. Spokane Falls Blvd, (Lab) 509-368-6809, Spokane, WA, 99 202, USA
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