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Tu Q, Li M, Sun Z, Niu H, Zhao L, Wang Y, Sun L, Liu Y, Zhu Y, Zhao G. Rapid and accurate identification of foodborne bacteria: a combined approach using confocal Raman micro-spectroscopy and explainable machine learning. Anal Bioanal Chem 2025; 417:2281-2292. [PMID: 40156634 DOI: 10.1007/s00216-025-05816-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2025] [Revised: 02/24/2025] [Accepted: 02/26/2025] [Indexed: 04/01/2025]
Abstract
This study proposes a rapid identification method for foodborne pathogens by combining Raman spectroscopy with explainable machine learning. Spectral data of nine common foodborne pathogens are collected using a laser confocal Raman spectrometer, and their characteristic Raman peaks are identified and analyzed. Key spectral features are extracted using competitive adaptive reweighted sampling (CARS) and the successive projections algorithm (SPA), while t-distributed stochastic neighbor embedding (t-SNE) is employed for visualization. Subsequently, classification models, including support vector machine (SVM) and random forest (RF), are developed, and the optimal model is selected based on classification accuracy (ACC), with the RF model achieving a test accuracy of 98.91%. To enhance the interpretability of the model, Shapley Additive exPlanations (SHAP) analysis is applied to evaluate the contribution of each spectral feature to the classification results, identifying critical Raman shifts significantly influencing pathogen classification. The results demonstrate that CARS-SPA feature selection not only improves the accuracy and efficiency of the classification model but also enhances its transparency and reliability. This study optimizes the workflow for food safety testing, reduces the risk of foodborne diseases, and provides robust technical support for public health and safety.
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Affiliation(s)
- Qiancheng Tu
- College of Food Science and Technology, Henan Agricultural University, Zhengzhou, 450002, China
| | - Miaoyun Li
- College of Food Science and Technology, Henan Agricultural University, Zhengzhou, 450002, China
| | - Zhiyuan Sun
- Henan Institute of Food and Salt Industry Inspection Technology, Zhengzhou, China
| | - Huimin Niu
- Henan Institute of Food and Salt Industry Inspection Technology, Zhengzhou, China
| | - Lijun Zhao
- College of Food Science and Technology, Henan Agricultural University, Zhengzhou, 450002, China
| | - Yanxiao Wang
- Henan Scientific Research Platform Service Center, Zhengzhou, China
| | - Lingxia Sun
- College of Food Science and Technology, Henan Agricultural University, Zhengzhou, 450002, China
| | - Yanxia Liu
- College of Food Science and Technology, Henan Agricultural University, Zhengzhou, 450002, China
| | - Yaodi Zhu
- College of Food Science and Technology, Henan Agricultural University, Zhengzhou, 450002, China.
| | - Gaiming Zhao
- College of Food Science and Technology, Henan Agricultural University, Zhengzhou, 450002, China
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2
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Guo Z, Zhang J, Wang H, Li S, Shao X, Xia L, Darwish IA, Guo Y, Sun X. Advancing detection of fungal and mycotoxins contamination in grains and oilseeds: Hyperspectral imaging for enhanced food safety. Food Chem 2025; 470:142689. [PMID: 39742592 DOI: 10.1016/j.foodchem.2024.142689] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2024] [Revised: 12/17/2024] [Accepted: 12/26/2024] [Indexed: 01/03/2025]
Abstract
Grains and oilseeds, including maize, wheat, and peanuts, are essential for human and animal nutrition but are vulnerable to contamination by fungi and their toxic metabolites, mycotoxins. This review provides a comprehensive investigation of the applications of hyperspectral imaging (HSI) technologies for the detection of fungal and mycotoxins contamination in grains and oilseeds. It explores the capability of HSI to identify specific spectral features of contamination and emphasized the critical role of sample properties and sample preparation techniques in HSI applications. Additionally, it reveals the challenges posed by the voluminous HSI data generated and discusses the application of sophisticated data processing techniques, including chemometrics methods and machine learning algorithms. The review highlights future research directions focused on refining HSI applications for practical use. Ultimately, this review underscores the potential of integrating HSI with advanced technologies to significantly enhance food safety and quality assurance.
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Affiliation(s)
- Zhen Guo
- School of Agricultural Engineering and Food Science, Shandong University of Technology, No. 266 Xincun Xilu, Zibo, Shandong 255049, China; Shandong Provincial Engineering Research Center of Vegetable Safety and Quality Traceability, No. 266 Xincun Xilu, Zibo, Shandong 255049, China; Zibo City Key Laboratory of Agricultural Product Safety Traceability, No. 266 Xincun Xilu, Zibo, Shandong 255049, China
| | - Jing Zhang
- School of Agricultural Engineering and Food Science, Shandong University of Technology, No. 266 Xincun Xilu, Zibo, Shandong 255049, China
| | - Haifang Wang
- Wangjing Hospital, China Academy of Chinese Medical Science, Beijing 100102, China
| | - Shiling Li
- School of Agricultural Engineering and Food Science, Shandong University of Technology, No. 266 Xincun Xilu, Zibo, Shandong 255049, China; Shandong Provincial Engineering Research Center of Vegetable Safety and Quality Traceability, No. 266 Xincun Xilu, Zibo, Shandong 255049, China; Zibo City Key Laboratory of Agricultural Product Safety Traceability, No. 266 Xincun Xilu, Zibo, Shandong 255049, China
| | - Xijun Shao
- School of Agricultural Engineering and Food Science, Shandong University of Technology, No. 266 Xincun Xilu, Zibo, Shandong 255049, China; Shandong Provincial Engineering Research Center of Vegetable Safety and Quality Traceability, No. 266 Xincun Xilu, Zibo, Shandong 255049, China; Zibo City Key Laboratory of Agricultural Product Safety Traceability, No. 266 Xincun Xilu, Zibo, Shandong 255049, China
| | - Lianming Xia
- School of Agricultural Engineering and Food Science, Shandong University of Technology, No. 266 Xincun Xilu, Zibo, Shandong 255049, China; Shandong Provincial Engineering Research Center of Vegetable Safety and Quality Traceability, No. 266 Xincun Xilu, Zibo, Shandong 255049, China; Zibo City Key Laboratory of Agricultural Product Safety Traceability, No. 266 Xincun Xilu, Zibo, Shandong 255049, China
| | - Ibrahim A Darwish
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P.O. Box 2457, Riyadh 11451, Saudi Arabia
| | - Yemin Guo
- School of Agricultural Engineering and Food Science, Shandong University of Technology, No. 266 Xincun Xilu, Zibo, Shandong 255049, China; Shandong Provincial Engineering Research Center of Vegetable Safety and Quality Traceability, No. 266 Xincun Xilu, Zibo, Shandong 255049, China; Zibo City Key Laboratory of Agricultural Product Safety Traceability, No. 266 Xincun Xilu, Zibo, Shandong 255049, China.
| | - Xia Sun
- School of Agricultural Engineering and Food Science, Shandong University of Technology, No. 266 Xincun Xilu, Zibo, Shandong 255049, China; Shandong Provincial Engineering Research Center of Vegetable Safety and Quality Traceability, No. 266 Xincun Xilu, Zibo, Shandong 255049, China; Zibo City Key Laboratory of Agricultural Product Safety Traceability, No. 266 Xincun Xilu, Zibo, Shandong 255049, China.
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3
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Guo X, Wang W, Jia B, Ni X, Zhuang H, Yoon SC, Gold S, Pokoo-Aikins A, Mitchell T, Bowker B, Ye J. Detection of aflatoxin B 1 level and revelation of its dynamic accumulation process using visible/near-infrared hyperspectral and microscopic imaging. Int J Food Microbiol 2025; 431:111065. [PMID: 39854958 DOI: 10.1016/j.ijfoodmicro.2025.111065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2024] [Revised: 11/26/2024] [Accepted: 01/12/2025] [Indexed: 01/27/2025]
Abstract
Understanding and controlling the dynamic process of aflatoxin B1 (AFB1) accumulation by Aspergillus flavus (A. flavus) remains challenging. In this study, the A. flavus development and AFB1 accumulation were investigated using visible/near-infrared (Vis/NIR) hyperspectral imaging (HSI) on culture media, Potato Dextrose Agar (PDA), PDA + l-glutamine (Gln), and PDA + rapamycin (RAPA). In addition, the levels of AFB1 in various heterogeneous regions of colonies were measured and their microscopic morphology was characterized. In the temporal and spatial domains, fungal colonies exhibited a concentric circular response pattern. A continuous increase in AFB1 content was observed in the PDA and PDA + Gln groups as culture time increased. The growth of A. flavus and aflatoxin accumulation were promoted by adding Gln to PDA. However, adding RAPA inhibited the development of fungi and the production of AFB1. The distribution of AFB1 across the fungal colony was uneven, and this heterogeneity was associated with the aging and autolysis of the hyphae. Principal component analysis showed that spectral bands of 480, 623, 674, 726 nm were related to the color changes of hyphae and spores during colony growth; however, wavelengths of 840, 882, 867, 972 nm were key bands related to changes in nutritional composition. Multiple preprocessing techniques and modeling methods employed to construct regression models for predicting AFB1 contents showed that the first-derivative and partial least squares regression (PLSR) provided the best results. A visualization map of AFB1 levels established using the optimal model showed a spatial pattern similar to the measurement results. This study highlights the application potential of Vis/NIR HSI for monitoring A. flavus growth and AFB1 content.
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Affiliation(s)
- Xiaohuan Guo
- Beijing Key Laboratory of Optimization Design for Modern Agriculture Equipment, College of Engineering, China Agriculture University, Beijing 100083, China
| | - Wei Wang
- Beijing Key Laboratory of Optimization Design for Modern Agriculture Equipment, College of Engineering, China Agriculture University, Beijing 100083, China.
| | - Beibei Jia
- Key Laboratory of Food Quality and Safety for State Market Regulation, Chinese Academy of Inspection and Quarantine, Beijing 100176, China
| | - Xinzhi Ni
- Crop Genetics and Breeding Research Unit, USDA-ARS, 2747 Davis Road, Tifton, GA 31793, USA
| | - Hong Zhuang
- Quality & Safety Assessment Research Unit, U. S. National Poultry Research Center, USDA-ARS, 950 College Station Rd., Athens, GA 30605, USA
| | - Seung-Chul Yoon
- Quality & Safety Assessment Research Unit, U. S. National Poultry Research Center, USDA-ARS, 950 College Station Rd., Athens, GA 30605, USA
| | - Scott Gold
- Toxicology and Mycotoxin Research Unit, U.S. National Poultry Research Center, USDA-ARS, 950 College Station Rd., Athens, GA 30605, USA
| | - Anthony Pokoo-Aikins
- Toxicology and Mycotoxin Research Unit, U.S. National Poultry Research Center, USDA-ARS, 950 College Station Rd., Athens, GA 30605, USA
| | - Trevor Mitchell
- Toxicology and Mycotoxin Research Unit, U.S. National Poultry Research Center, USDA-ARS, 950 College Station Rd., Athens, GA 30605, USA
| | - Brian Bowker
- Quality & Safety Assessment Research Unit, U. S. National Poultry Research Center, USDA-ARS, 950 College Station Rd., Athens, GA 30605, USA
| | - Jiawei Ye
- Beijing Key Laboratory of Optimization Design for Modern Agriculture Equipment, College of Engineering, China Agriculture University, Beijing 100083, China
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Zou Z, Zhen J, Wang Q, Wu Q, Li M, Yuan D, Cui Q, Zhou M, Xu L. Research on nondestructive detection of sweet-waxy corn seed varieties and mildew based on stacked ensemble learning and hyperspectral feature fusion technology. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 322:124816. [PMID: 39032232 DOI: 10.1016/j.saa.2024.124816] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2024] [Revised: 06/27/2024] [Accepted: 07/12/2024] [Indexed: 07/23/2024]
Abstract
The variety and quality of corn seeds are crucial factors affecting crop yield and farmers' economic benefits. This study adopts an innovative method based on a hyperspectral imaging system combined with stacked ensemble learning, aiming to achieve varieties classification and mildew detection of sweet-waxy corn seeds. First, data interference is eliminated by extracting the spectral and texture information of each corn sample and preprocessing the data. Secondly, a stacked ensemble learning model (Stack) was constructed by stacking base models and meta-models. Its results were compared with those of the base models, including Gradient Boosting Decision Tree (GBDT), Extreme Gradient Boosting (XGBoost), Light Gradient Boosting Machine (LightGBM), and Random Forest (RF).Finally, the overall performance of the model is improved through the information fusion strategy of hyperspectral data and texture information. The research results indicate that the GBDT-Stack model, which integrates spectral and texture data, demonstrated optimal performance in the comprehensive classification of both corn seed varieties and mold detection. On the test set, the model achieved an average prediction accuracy of 97.01%. Specifically, the model achieved a test set accuracy ranging from 94.49% to 97.58% for different corn seed varieties and a test set accuracy of 98.89% for mildew detection. This model not only classifies corn seed varieties but also accurately detects mildew, demonstrating its wide applicability. The method has huge potential and is of great significance for improving crop yield and quality.
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Affiliation(s)
- Zhiyong Zou
- College of Mechanical and Electrical Engineering, Sichuan Agricultural University, Ya'an 625014, China
| | - Jiangbo Zhen
- College of Mechanical and Electrical Engineering, Sichuan Agricultural University, Ya'an 625014, China
| | - Qianlong Wang
- College of Mechanical and Electrical Engineering, Sichuan Agricultural University, Ya'an 625014, China
| | - Qingsong Wu
- College of Mechanical and Electrical Engineering, Sichuan Agricultural University, Ya'an 625014, China
| | - Menghua Li
- College of Mechanical and Electrical Engineering, Sichuan Agricultural University, Ya'an 625014, China
| | - Dongyu Yuan
- College of Mechanical and Electrical Engineering, Sichuan Agricultural University, Ya'an 625014, China
| | - Qiang Cui
- College of Food Science, Sichuan Agricultural University, Ya'an 625014, China
| | - Man Zhou
- College of Food Science, Sichuan Agricultural University, Ya'an 625014, China.
| | - Lijia Xu
- College of Mechanical and Electrical Engineering, Sichuan Agricultural University, Ya'an 625014, China.
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5
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Zhang K, Kwadzokpui BA, Adade SYSS, Lin H, Chen Q. Quantitative and qualitative detection of target heavy metals using anti-interference colorimetric sensor Array combined with near-infrared spectroscopy. Food Chem 2024; 459:140305. [PMID: 39024872 DOI: 10.1016/j.foodchem.2024.140305] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Revised: 06/28/2024] [Accepted: 06/30/2024] [Indexed: 07/20/2024]
Abstract
An anti-interference colorimetric sensor array (CSA) technique was developed for the qualitative and quantitative detection of target heavy metals in corn oil. This method involves a binding mechanism that triggers changes in atomic energy levels and visible color changes. A custom-built olfactory visualization device was employed to gather spectral data, revealing distinct CSA color difference patterns. Subsequently, three pattern recognition algorithms were used to create an identification model for the target heavy metals. The results showed that the ACO-KNN (Ant Colony Optimization-K-Nearest Neighbor) model outperformed the other models, achieving accuracy rates of 90.28% and 89.58% for the calibration and prediction sets, respectively. The ACO-PLS (Partial Least Square) model was more stable with the lowest root mean square error of prediction (RMSEP), which were 0.1730 and 0.1180, respectively. The limit of detection (LOD) and quantification (LOQ) of Pb and Hg were (0.3, 0.6, 1.1 and 2.2) x 10-3 mg/L, respectively.
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Affiliation(s)
- Kexin Zhang
- School of Food and Biological Engineering, Jiangsu University, Jiangsu 212013, PR China
| | | | | | - Hao Lin
- School of Food and Biological Engineering, Jiangsu University, Jiangsu 212013, PR China.
| | - Quansheng Chen
- School of Food and Biological Engineering, Jiangsu University, Jiangsu 212013, PR China; College of Ocean Food and Biological Engineering, Jimei University, Xiamen 361021, PR China.
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6
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Thapa S, Gill HS, Halder J, Rana A, Ali S, Maimaitijiang M, Gill U, Bernardo A, St Amand P, Bai G, Sehgal SK. Integrating genomics, phenomics, and deep learning improves the predictive ability for Fusarium head blight-related traits in winter wheat. THE PLANT GENOME 2024; 17:e20470. [PMID: 38853339 DOI: 10.1002/tpg2.20470] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2024] [Revised: 04/07/2024] [Accepted: 04/14/2024] [Indexed: 06/11/2024]
Abstract
Fusarium head blight (FHB) remains one of the most destructive diseases of wheat (Triticum aestivum L.), causing considerable losses in yield and end-use quality. Phenotyping of FHB resistance traits, Fusarium-damaged kernels (FDK), and deoxynivalenol (DON), is either prone to human biases or resource expensive, hindering the progress in breeding for FHB-resistant cultivars. Though genomic selection (GS) can be an effective way to select these traits, inaccurate phenotyping remains a hurdle in exploiting this approach. Here, we used an artificial intelligence (AI)-based precise FDK estimation that exhibits high heritability and correlation with DON. Further, GS using AI-based FDK (FDK_QVIS/FDK_QNIR) showed a two-fold increase in predictive ability (PA) compared to GS for traditionally estimated FDK (FDK_V). Next, the AI-based FDK was evaluated along with other traits in multi-trait (MT) GS models to predict DON. The inclusion of FDK_QNIR and FDK_QVIS with days to heading as covariates improved the PA for DON by 58% over the baseline single-trait GS model. We next used hyperspectral imaging of FHB-infected wheat kernels as a novel avenue to improve the MT GS for DON. The PA for DON using selected wavebands derived from hyperspectral imaging in MT GS models surpassed the single-trait GS model by around 40%. Finally, we evaluated phenomic prediction for DON by integrating hyperspectral imaging with deep learning to directly predict DON in FHB-infected wheat kernels and observed an accuracy (R2 = 0.45) comparable to best-performing MT GS models. This study demonstrates the potential application of AI and vision-based platforms to improve PA for FHB-related traits using genomic and phenomic selection.
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Affiliation(s)
- Subash Thapa
- Department of Agronomy, Horticulture and Plant Science, South Dakota State University, Brookings, South Dakota, USA
| | - Harsimardeep S Gill
- Department of Agronomy, Horticulture and Plant Science, South Dakota State University, Brookings, South Dakota, USA
| | - Jyotirmoy Halder
- Department of Agronomy, Horticulture and Plant Science, South Dakota State University, Brookings, South Dakota, USA
| | - Anshul Rana
- Department of Agronomy, Horticulture and Plant Science, South Dakota State University, Brookings, South Dakota, USA
| | - Shaukat Ali
- Department of Agronomy, Horticulture and Plant Science, South Dakota State University, Brookings, South Dakota, USA
| | - Maitiniyazi Maimaitijiang
- Department of Geography & Geospatial Sciences, Geospatial Sciences Center of Excellence, South Dakota State University, Brookings, South Dakota, USA
| | - Upinder Gill
- Department of Plant Pathology, North Dakota State University, Fargo, North Dakota, USA
| | - Amy Bernardo
- USDA-ARS, Hard Winter Wheat Genetics Research Unit, Manhattan, Kansas, USA
| | - Paul St Amand
- USDA-ARS, Hard Winter Wheat Genetics Research Unit, Manhattan, Kansas, USA
| | - Guihua Bai
- USDA-ARS, Hard Winter Wheat Genetics Research Unit, Manhattan, Kansas, USA
| | - Sunish K Sehgal
- Department of Agronomy, Horticulture and Plant Science, South Dakota State University, Brookings, South Dakota, USA
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7
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Concepcion JS, Noble AD, Thompson AM, Dong Y, Olson EL. Genomic regions influencing the hyperspectral phenome of deoxynivalenol infected wheat. Sci Rep 2024; 14:19340. [PMID: 39164367 PMCID: PMC11336138 DOI: 10.1038/s41598-024-69830-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2024] [Accepted: 08/09/2024] [Indexed: 08/22/2024] Open
Abstract
The quantitative nature of fusarium head blight (FHB) resistance requires further exploration of the wheat genome to identify regions conferring resistance. In this study, we explored the application of hyperspectral imaging of Fusarium-infected wheat kernels and identified regions of the wheat genome contributing significantly to the accumulation of Deoxynivalenol (DON) mycotoxin. Strong correlations were identified between hyperspectral reflectance values for 204 wavebands in the 397-673 nm range and DON mycotoxin. Dimensionality reduction using principal components was performed for all 204 wavebands and 38 sliding windows across the range of wavebands. The first principal component (PC1) of all 204 wavebands explained 70% of the total variation in waveband reflectance values and was highly correlated with DON mycotoxin. PC1 was used as a phenotype in a genome wide association study and a large effect QTL on chromosome 2D was identified for PC1 of all wavebands as well as nearly all 38 sliding windows. The allele contributing variation in PC1 values also led to a substantial reduction in DON. The 2D polymorphism affecting DON levels localized to the exon of TraesCS2D02G524600 which is upregulated in wheat spike and rachis tissues during FHB infection. This work demonstrates the value of hyperspectral imaging as a correlated trait for investigating the genetic basis of resistance and developing wheat varieties with enhanced resistance to FHB.
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Affiliation(s)
- Jonathan S Concepcion
- Department of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, MI, 48823, USA
| | - Amanda D Noble
- Department of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, MI, 48823, USA
| | - Addie M Thompson
- Department of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, MI, 48823, USA
| | - Yanhong Dong
- Department of Plant Pathology, University of Minnesota, St. Paul, MN, 55108, USA
| | - Eric L Olson
- Department of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, MI, 48823, USA.
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Zhang S, Qi X, Gao M, Dai C, Yin G, Ma D, Feng W, Guo T, He L. Estimation of wheat protein content and wet gluten content based on fusion of hyperspectral and RGB sensors using machine learning algorithms. Food Chem 2024; 448:139103. [PMID: 38547708 DOI: 10.1016/j.foodchem.2024.139103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2023] [Revised: 02/27/2024] [Accepted: 03/19/2024] [Indexed: 04/24/2024]
Abstract
The protein content (PC) and wet gluten content (WGC) are crucial indicators determining the quality of wheat, playing a pivotal role in evaluating processing and baking performance. Original reflectance (OR), wavelet feature (WF), and color index (CI) were extracted from hyperspectral and RGB sensors. Combining Pearson-competitive adaptive reweighted sampling (CARs)-variance inflation factor (VIF) with four machine learning (ML) algorithms were used to model accuracy of PC and WGC. As a result, three CIs, six ORs, and twelve WFs were selected for PC and WGC datasets. For single-modal data, the back-propagation neural network exhibited superior accuracy, with estimation accuracies (WF > OR > CI). For multi-modal data, the random forest regression paired with OR + WF + CI showed the highest validation accuracy. Utilizing the Gini impurity, WF outweighed OR and CI in the PC and WGC models. The amalgamation of MLs with multimodal data harnessed the synergies among various remote sensing sources, substantially augmenting model precision and stability.
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Affiliation(s)
- Shaohua Zhang
- Agronomy College of Henan Agriculture University/State Key Laboratory of Wheat and Maize Crop Science, Zhengzhou 450046, Henan, China
| | - Xinghui Qi
- Agronomy College of Henan Agriculture University/State Key Laboratory of Wheat and Maize Crop Science, Zhengzhou 450046, Henan, China
| | - Mengyuan Gao
- Agronomy College of Henan Agriculture University/State Key Laboratory of Wheat and Maize Crop Science, Zhengzhou 450046, Henan, China
| | - Changjun Dai
- Heilongjiang Academy of Agricultural Sciences, Haerbin 150000, Heilongjiang, China
| | - Guihong Yin
- Agronomy College of Henan Agriculture University/State Key Laboratory of Wheat and Maize Crop Science, Zhengzhou 450046, Henan, China
| | - Dongyun Ma
- Agronomy College of Henan Agriculture University/State Key Laboratory of Wheat and Maize Crop Science, Zhengzhou 450046, Henan, China; National Wheat Technology Innovation Center, Zhengzhou 450046, Henan, China
| | - Wei Feng
- Agronomy College of Henan Agriculture University/State Key Laboratory of Wheat and Maize Crop Science, Zhengzhou 450046, Henan, China; National Wheat Technology Innovation Center, Zhengzhou 450046, Henan, China
| | - Tiancai Guo
- Agronomy College of Henan Agriculture University/State Key Laboratory of Wheat and Maize Crop Science, Zhengzhou 450046, Henan, China; National Wheat Technology Innovation Center, Zhengzhou 450046, Henan, China.
| | - Li He
- Agronomy College of Henan Agriculture University/State Key Laboratory of Wheat and Maize Crop Science, Zhengzhou 450046, Henan, China; National Wheat Technology Innovation Center, Zhengzhou 450046, Henan, China.
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9
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Luo S, Yuan X, Liang R, Feng K, Xu H, Zhao J, Wang S, Lan Y, Long Y, Deng H. Prediction and visualization of gene modulated ultralow cadmium accumulation in brown rice grains by hyperspectral imaging. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 297:122720. [PMID: 37058840 DOI: 10.1016/j.saa.2023.122720] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2022] [Revised: 03/20/2023] [Accepted: 04/06/2023] [Indexed: 05/14/2023]
Abstract
Monitoring (including prediction and visualization) the gene modulated cadmium (Cd) accumulation in rice grains is one of the most important steps for identification of key transporter genes responsible for grain Cd accumulation and breeding low grain-Cd-accumulating rice cultivars. A method to predict and visualize the gene modulated ultralow Cd accumulation in brown rice grains based on the hyperspectral image (HSI) technology is proposed in this study. Firstly, the Vis-NIR HSIs of brown rice grain samples with 48Cd content levels induced by gene modulation (ranging from 0.0637 to 0.1845 mg/kg) are collected using HSI system. Then, Kernel-ridge (KRR) and random forest (RFR) regression models based on full spectral data and the data after feature dimension reduction (FDR) with kernel principal component analysis (KPCA) and truncated singular value decomposition (TSVD) algorithms are established to predict the Cd contents. RFR model shows poor performance due to the over-fitting based on the full spectral data, while the KRR model can obtain a good predict accuracy with Rp2 of 0.9035, RMSEP of 0.0037 and RPD of 3.278. After the FDR of the full spectral data, the RFR model combined with TSVD reaches the optimum prediction accuracy with Rp2 of 0.9056, RMSEP of 0.0074 and RPD of 3.318, and the best prediction precision of KRR model can also be further enhanced by TSVD with Rp2 of 0.9224, RMSEP of 0.0067 and RPD of 3.512. Finally, the visualization of the predicted Cd accumulation in brown rice grains are realized based on the best regression model (KRR + TSVD). The results of this work indicate that Vis-NIR HSI has great potential for detection and visualization gene modulation induced ultralow Cd accumulation and transport in rice crops.
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Affiliation(s)
- Shuiyang Luo
- College of Electronic Engineering / College of Artificial Intelligence, South China Agricultural University, Guangzhou 510642, China
| | - Xue Yuan
- Guangdong Provincial Key Laboratory of Plant Molecular Breeding, South China Agricultural University, Guangzhou 510642, China.
| | - Ruiqing Liang
- Guangdong Provincial Key Laboratory of Plant Molecular Breeding, South China Agricultural University, Guangzhou 510642, China
| | - Kunsheng Feng
- College of Electronic Engineering / College of Artificial Intelligence, South China Agricultural University, Guangzhou 510642, China
| | - Haitao Xu
- College of Electronic Engineering / College of Artificial Intelligence, South China Agricultural University, Guangzhou 510642, China
| | - Jing Zhao
- College of Electronic Engineering / College of Artificial Intelligence, South China Agricultural University, Guangzhou 510642, China
| | - Shaokui Wang
- Guangdong Provincial Key Laboratory of Plant Molecular Breeding, South China Agricultural University, Guangzhou 510642, China
| | - Yubin Lan
- College of Electronic Engineering / College of Artificial Intelligence, South China Agricultural University, Guangzhou 510642, China
| | - Yongbing Long
- College of Electronic Engineering / College of Artificial Intelligence, South China Agricultural University, Guangzhou 510642, China
| | - Haidong Deng
- College of Electronic Engineering / College of Artificial Intelligence, South China Agricultural University, Guangzhou 510642, China.
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10
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Seeley MM, Martin RE, Giardina C, Luiz B, Francisco K, Cook Z, Hughes MA, Asner GP. Leaf spectroscopy of resistance to Ceratocystis wilt of 'Ōhi'a. PLoS One 2023; 18:e0287144. [PMID: 37352315 PMCID: PMC10289452 DOI: 10.1371/journal.pone.0287144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2023] [Accepted: 05/31/2023] [Indexed: 06/25/2023] Open
Abstract
Plant pathogens are increasingly compromising forest health, with impacts to the ecological, economic, and cultural goods and services these global forests provide. One response to these threats is the identification of disease resistance in host trees, which with conventional methods can take years or even decades to achieve. Remote sensing methods have accelerated host resistance identification in agricultural crops and for a select few forest tree species, but applications are rare. Ceratocystis wilt of 'ōhi'a, caused by the fungal pathogen Ceratocystis lukuohia has been killing large numbers of the native Hawaiian tree, Metrosideros polymorpha or 'Ōhi'a, Hawaii's most common native tree and a biocultural keystone species. Here, we assessed whether resistance to C. lukuohia is detectable in leaf-level reflectance spectra (400-2500 nm) and used chemometric conversion equations to understand changes in leaf chemical traits of the plants as indicators of wilt symptom progression. We collected leaf reflectance data prior to artificially inoculating 2-3-year-old M. polymorpha clones with C. lukuohia. Plants were rated 3x a week for foliar wilt symptom development and leaf spectra data collected at 2 to 4-day intervals for 120 days following inoculation. We applied principal component analysis (PCA) to the pre-inoculation spectra, with plants grouped according to site of origin and subtaxon, and two-way analysis of variance to assess whether each principal component separated individuals based on their disease severity ratings. We identified seven leaf traits that changed in susceptible plants following inoculation (tannins, chlorophyll a+b, NSC, total C, leaf water, phenols, and cellulose) and leaf chemistries that differed between resistant and early-stage susceptible plants, most notably chlorophyll a+b and cellulose. Further, disease resistance was found to be detectable in the reflectance data, indicating that remote sensing work could expedite Ceratocystis wilt of 'ōhi'a resistance screenings.
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Affiliation(s)
- Megan M. Seeley
- Center for Global Discovery and Conservation Science, Arizona State University, Hilo, Hawaiʻi, United States of America
- School of Geographical Sciences and Urban Planning, Arizona State University, Tempe, Arizona, United States of America
| | - Roberta E. Martin
- Center for Global Discovery and Conservation Science, Arizona State University, Hilo, Hawaiʻi, United States of America
- School of Geographical Sciences and Urban Planning, Arizona State University, Tempe, Arizona, United States of America
| | - Christian Giardina
- Institute of Pacific Islands Forestry, Pacific Southwest Research Station, USDA Forest Service, Hilo, Hawaiʻi, United States of America
| | - Blaine Luiz
- Akaka Foundation for Tropical Forests, Hilo, Hawaiʻi, United States of America
| | - Kainana Francisco
- Institute of Pacific Islands Forestry, Pacific Southwest Research Station, USDA Forest Service, Hilo, Hawaiʻi, United States of America
| | - Zachary Cook
- Institute of Pacific Islands Forestry, Pacific Southwest Research Station, USDA Forest Service, Hilo, Hawaiʻi, United States of America
| | - Marc A. Hughes
- Institute of Pacific Islands Forestry, Pacific Southwest Research Station, USDA Forest Service, Hilo, Hawaiʻi, United States of America
| | - Gregory P. Asner
- Center for Global Discovery and Conservation Science, Arizona State University, Hilo, Hawaiʻi, United States of America
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11
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Liu W, Sun S, Liu Y, Deng H, Hong F, Liu C, Zheng L. Determination of benzo(a)pyrene in peanut oil based on Raman spectroscopy and machine learning methods. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 299:122806. [PMID: 37167744 DOI: 10.1016/j.saa.2023.122806] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2023] [Revised: 04/26/2023] [Accepted: 04/27/2023] [Indexed: 05/13/2023]
Abstract
Benzo(a)pyrene (BaP) generated in the production process of oil is harmful to human severely as a kind of carcinogenic substance. In this study, the qualitative and quantitative detection of BaP concentration in peanut oil was investigated based on Raman spectroscopy combined with machine learning methods. The glass substrates and magnetron sputtered gold substrates for the Raman spectra were compared and the data preprocessing methods of principal component analysis (PCA) and t-distributed stochastic neighbor embedding (t-SNE) were used to process Raman signal. Back propagation neural network (BPNN), partial least squares regression (PLSR), support vector machine (SVM) and random forest (RF) algorithms were developed to obtain the qualitative and quantitative detection model of BaP concentration in peanut oil. The results showed that the Raman spectra with the glass substrate was more suitable for the BaP detection than magnetron sputtered gold substrates. RF combined with t-SNE could achieve an accuracy of 97.5% in the qualitative detection of BaP concentration levels in model validation experiment, and the correlation coefficient of the prediction set (Rp) in the quantitative detection was 0.9932, the root mean square error (RMSEP) was 0.8323 μg/kg and the bias was 0.1316 μg/kg. It can be concluded that Raman spectroscopy combined with machine learning methods could provide an effective method for the rapid determination of BaP concentration in peanut oil.
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Affiliation(s)
- Wei Liu
- Intelligent Control and Compute Vision Lab, Hefei University, Hefei 230601, China
| | - Shengai Sun
- Intelligent Control and Compute Vision Lab, Hefei University, Hefei 230601, China
| | - Yang Liu
- Intelligent Control and Compute Vision Lab, Hefei University, Hefei 230601, China
| | - Haiyang Deng
- Intelligent Control and Compute Vision Lab, Hefei University, Hefei 230601, China
| | - Fei Hong
- Intelligent Control and Compute Vision Lab, Hefei University, Hefei 230601, China
| | - Changhong Liu
- School of Food and Biological Engineering, Hefei University of Technology, Hefei 230009, China.
| | - Lei Zheng
- School of Food and Biological Engineering, Hefei University of Technology, Hefei 230009, China; Research Laboratory of Agricultural Environment and Food Safety, Anhui Modern Agricultural Industry Technology System, Hefei 230009, China.
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12
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Fan KJ, Liu BY, Su WH. Discrimination of Deoxynivalenol Levels of Barley Kernels Using Hyperspectral Imaging in Tandem with Optimized Convolutional Neural Network. SENSORS (BASEL, SWITZERLAND) 2023; 23:2668. [PMID: 36904871 PMCID: PMC10007200 DOI: 10.3390/s23052668] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/10/2023] [Revised: 02/24/2023] [Accepted: 02/27/2023] [Indexed: 06/18/2023]
Abstract
Deoxynivalenol (DON) in raw and processed grain poses significant risks to human and animal health. In this study, the feasibility of classifying DON levels in different genetic lines of barley kernels was evaluated using hyperspectral imaging (HSI) (382-1030 nm) in tandem with an optimized convolutional neural network (CNN). Machine learning methods including logistic regression, support vector machine, stochastic gradient descent, K nearest neighbors, random forest, and CNN were respectively used to develop the classification models. Spectral preprocessing methods including wavelet transform and max-min normalization helped to enhance the performance of different models. A simplified CNN model showed better performance than other machine learning models. Competitive adaptive reweighted sampling (CARS) in combination with successive projections algorithm (SPA) was applied to select the best set of characteristic wavelengths. Based on seven wavelengths selected, the optimized CARS-SPA-CNN model distinguished barley grains with low levels of DON (<5 mg/kg) from those with higher levels (5 mg/kg < DON ≤ 14 mg/kg) with an accuracy of 89.41%. The lower levels of DON class I (0.19 mg/kg ≤ DON ≤ 1.25 mg/kg) and class II (1.25 mg/kg < DON ≤ 5 mg/kg) were successfully distinguished based on the optimized CNN model, yielding a precision of 89.81%. The results suggest that HSI in tandem with CNN has great potential for discrimination of DON levels of barley kernels.
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13
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Li Z, Song J, Ma Y, Yu Y, He X, Guo Y, Dou J, Dong H. Identification of aged-rice adulteration based on near-infrared spectroscopy combined with partial least squares regression and characteristic wavelength variables. Food Chem X 2022; 17:100539. [PMID: 36845513 PMCID: PMC9943763 DOI: 10.1016/j.fochx.2022.100539] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2022] [Revised: 11/10/2022] [Accepted: 12/03/2022] [Indexed: 12/13/2022] Open
Abstract
The long-term storage of rice will inevitably be involved in the deterioration of edible quality, and aged rice poses a great threat to food safety and human health. The acid value can be employed as a sensitive index for the determination of rice quality and freshness. In this study, near-infrared spectra of three kinds of rice (Chinese Daohuaxiang, southern japonica rice, and late japonica rice) mixed with different proportions of aged rice were collected. The partial least squares regression (PLSR) model with different preprocessing was constructed to identify the aged rice adulteration. Meanwhile, a competitive adaptive reweighted sampling (CARS) algorithm was used to extract the optimization model of characteristic variables. The constructed CARS-PLSR model method could not only reduce greatly the number of characteristic variables required by the spectrum but also improve the identification accuracy of three kinds of aged-rice adulteration. As above, this study proposed a rapid, simple, and accurate detection method for aged-rice adulteration, providing new clues and alternatives for the quality control of commercial rice.
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Affiliation(s)
- Zhanming Li
- School of Grain Science and Technology, Jiangsu University of Science and Technology, Zhenjiang 212100, China
| | - Jiahui Song
- School of Grain Science and Technology, Jiangsu University of Science and Technology, Zhenjiang 212100, China
| | - Yinxing Ma
- School of Grain Science and Technology, Jiangsu University of Science and Technology, Zhenjiang 212100, China
| | - Yue Yu
- School of Grain Science and Technology, Jiangsu University of Science and Technology, Zhenjiang 212100, China,Corresponding authors.
| | - Xueming He
- College of Food Science and Engineering, Nanjing University of Finance and Economics, Nanjing 210023, China
| | - Yuanxin Guo
- School of Grain Science and Technology, Jiangsu University of Science and Technology, Zhenjiang 212100, China
| | - Jinxin Dou
- Academy of National Food and Strategic Reserves Administration, Beijing 100037, China
| | - Hao Dong
- College of Light Industry and Food Sciences, Zhongkai University of Agriculture and Engineering, Guangzhou 510225, China,Corresponding authors.
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14
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Effect of hydroxypr1opylation on physical properties, antifungal and mycotoxin inhibitory activities of clove oil emulsions coated with chitosan. FOOD BIOSCI 2022. [DOI: 10.1016/j.fbio.2022.102159] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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15
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Freitag S, Sulyok M, Logan N, Elliott CT, Krska R. The potential and applicability of infrared spectroscopic methods for the rapid screening and routine analysis of mycotoxins in food crops. Compr Rev Food Sci Food Saf 2022; 21:5199-5224. [PMID: 36215130 DOI: 10.1111/1541-4337.13054] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Revised: 08/18/2022] [Accepted: 09/06/2022] [Indexed: 01/28/2023]
Abstract
Infrared (IR) spectroscopy is increasingly being used to analyze food crops for quality and safety purposes in a rapid, nondestructive, and eco-friendly manner. The lack of sensitivity and the overlapping absorption characteristics of major sample matrix components, however, often prevent the direct determination of food contaminants at trace levels. By measuring fungal-induced matrix changes with near IR and mid IR spectroscopy as well as hyperspectral imaging, the indirect determination of mycotoxins in food crops has been realized. Recent studies underline that such IR spectroscopic platforms have great potential for the rapid analysis of mycotoxins along the food and feed supply chain. However, there are no published reports on the validation of IR methods according to official regulations, and those publications that demonstrate their applicability in a routine analytical set-up are scarce. Therefore, the purpose of this review is to discuss the current state-of-the-art and the potential of IR spectroscopic methods for the rapid determination of mycotoxins in food crops. The study critically reflects on the applicability and limitations of IR spectroscopy in routine analysis and provides guidance to non-spectroscopists from the food and feed sector considering implementation of IR spectroscopy for rapid mycotoxin screening. Finally, an outlook on trends, possible fields of applications, and different ways of implementation in the food and feed safety area are discussed.
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Affiliation(s)
- Stephan Freitag
- Department of Agrobiotechnology IFA-Tulln, Institute of Bioanalytics and Agro-Metabolomics, University of Natural Resources and Life Sciences, Vienna, Tulln, Austria.,FFoQSI GmbH-Austrian Competence Centre for Feed and Food Quality, Safety and Innovation, Technopark 1C, Tulln, Austria
| | - Michael Sulyok
- Department of Agrobiotechnology IFA-Tulln, Institute of Bioanalytics and Agro-Metabolomics, University of Natural Resources and Life Sciences, Vienna, Tulln, Austria.,FFoQSI GmbH-Austrian Competence Centre for Feed and Food Quality, Safety and Innovation, Technopark 1C, Tulln, Austria
| | - Natasha Logan
- Institute for Global Food Security, School of Biological Sciences, Queens University Belfast, Belfast, Northern Ireland, UK
| | - Christopher T Elliott
- Institute for Global Food Security, School of Biological Sciences, Queens University Belfast, Belfast, Northern Ireland, UK
| | - Rudolf Krska
- Department of Agrobiotechnology IFA-Tulln, Institute of Bioanalytics and Agro-Metabolomics, University of Natural Resources and Life Sciences, Vienna, Tulln, Austria.,FFoQSI GmbH-Austrian Competence Centre for Feed and Food Quality, Safety and Innovation, Technopark 1C, Tulln, Austria.,Institute for Global Food Security, School of Biological Sciences, Queens University Belfast, Belfast, Northern Ireland, UK
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16
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Qu M, Tian S, Yu H, Liu D, Zhang C, He Y, Cheng F. Single-kernel classification of deoxynivalenol and zearalenone contaminated maize based on visible light imaging under ultraviolet light excitation combined with polarized light imaging. Food Control 2022. [DOI: 10.1016/j.foodcont.2022.109354] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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17
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Effect of germ orientation during Vis-NIR hyperspectral imaging for the detection of fungal contamination in maize kernel using PLS-DA, ANN and 1D-CNN modelling. Food Control 2022. [DOI: 10.1016/j.foodcont.2022.109077] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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18
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Two-Stage Convolutional Neural Networks for Diagnosing the Severity of Alternaria Leaf Blotch Disease of the Apple Tree. REMOTE SENSING 2022. [DOI: 10.3390/rs14112519] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
In many parts of the world, apple trees suffer from severe foliar damage each year due to infection of Alternaria blotch (Alternaria alternata f. sp. Mali), resulting in serious economic losses to growers. Traditional methods for disease detection and severity classification mostly rely on manual labor, which is slow, labor-intensive and highly subjective. There is an urgent need to develop an effective protocol to rapidly and accurately evaluate disease severity. In this study, DeeplabV3+, PSPNet and UNet were used to assess the severity of apple Alternaria leaf blotch. For identifications of leaves and disease areas, the dataset with a total of 5382 samples was randomly split into 74% (4004 samples) for model training, 9% (494 samples) for validation, 8% (444 samples) for testing and 8% (440 samples) for overall testing. Apple leaves were first segmented from complex backgrounds using the deep-learning algorithms with different backbones. Then, the recognition of disease areas was performed on the segmented leaves. The results showed that the PSPNet model with MobileNetV2 backbone exhibited the highest performance in leaf segmentation, with precision, recall and MIoU values of 99.15%, 99.26% and 98.42%, respectively. The UNet model with VGG backbone performed the best in disease-area prediction, with a precision of 95.84%, a recall of 95.54% and a MIoU value of 92.05%. The ratio of disease area to leaf area was calculated to assess the disease severity. The results showed that the average accuracy for severity classification was 96.41%. Moreover, both the correlation coefficient and the consistency correlation coefficient were 0.992, indicating a high agreement between the reference values and the value that the research predicted. This study proves the feasibility of rapid estimation of the severity of apple Alternaria leaf blotch, which will provide technical support for precise application of pesticides.
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19
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Hyperspectral imaging for the classification of individual cereal kernels according to fungal and mycotoxins contamination: A review. Food Res Int 2022; 155:111102. [DOI: 10.1016/j.foodres.2022.111102] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2022] [Revised: 03/03/2022] [Accepted: 03/04/2022] [Indexed: 11/21/2022]
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20
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Yipeng L, Wenbing L, Kaixuan H, Wentao T, Ling Z, Shizhuang W, Linsheng H. Determination of wheat kernels damaged by Fusarium head blight using monochromatic images of effective wavelengths from hyperspectral imaging coupled with an architecture self-search deep network. Food Control 2022. [DOI: 10.1016/j.foodcont.2022.108819] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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21
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An D, Zhang L, Liu Z, Liu J, Wei Y. Advances in infrared spectroscopy and hyperspectral imaging combined with artificial intelligence for the detection of cereals quality. Crit Rev Food Sci Nutr 2022; 63:9766-9796. [PMID: 35442834 DOI: 10.1080/10408398.2022.2066062] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
Cereals provide humans with essential nutrients, and its quality assessment has attracted widespread attention. Infrared (IR) spectroscopy (IRS) and hyperspectral imaging (HSI), as powerful nondestructive testing technologies, are widely used in the quality monitoring of food and agricultural products. Artificial intelligence (AI) plays a crucial role in data mining, especially in recent years, a new generation of AI represented by deep learning (DL) has made breakthroughs in analyzing spectral data of food and agricultural products. The combination of IRS/HSI and AI further promotes the development of quality evaluation of cereals. This paper comprehensively reviews the advances of IRS and HSI combined with AI in the detection of cereals quality. The aim is to present a complete review topic as it touches the background knowledge, instrumentation, spectral data processing (including preprocessing, feature extraction and modeling), spectral interpretation, etc. To suit this goal, principles of IRS and HSI, as well as basic concepts related to AI are first introduced, followed by a critical evaluation of representative reports integrating IRS and HSI with AI. Finally, the advantages, challenges and future trends of IRS and HSI combined with AI are further discussed, so as to provide constructive suggestions and guidance for researchers.
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Affiliation(s)
- Dong An
- National Innovation Center for Digital Fishery, China Agricultural University, Beijing, China
- Key Laboratory of Smart Farming Technologies for Aquatic Animals and Livestock, Ministry of Agriculture and Rural Affairs, China Agricultural University, Beijing, China
- Beijing Engineering and Technology Research Center for Internet of Things in Agriculture, Beijing, China
- College of Information and Electrical Engineering, China Agricultural University, Beijing, China
| | - Liu Zhang
- National Innovation Center for Digital Fishery, China Agricultural University, Beijing, China
- Key Laboratory of Smart Farming Technologies for Aquatic Animals and Livestock, Ministry of Agriculture and Rural Affairs, China Agricultural University, Beijing, China
- Beijing Engineering and Technology Research Center for Internet of Things in Agriculture, Beijing, China
- College of Information and Electrical Engineering, China Agricultural University, Beijing, China
| | - Zhe Liu
- College of Land Science and Technology, China Agricultural University, Beijing, China
| | - Jincun Liu
- National Innovation Center for Digital Fishery, China Agricultural University, Beijing, China
- Key Laboratory of Smart Farming Technologies for Aquatic Animals and Livestock, Ministry of Agriculture and Rural Affairs, China Agricultural University, Beijing, China
- Beijing Engineering and Technology Research Center for Internet of Things in Agriculture, Beijing, China
- College of Information and Electrical Engineering, China Agricultural University, Beijing, China
| | - Yaoguang Wei
- National Innovation Center for Digital Fishery, China Agricultural University, Beijing, China
- Key Laboratory of Smart Farming Technologies for Aquatic Animals and Livestock, Ministry of Agriculture and Rural Affairs, China Agricultural University, Beijing, China
- Beijing Engineering and Technology Research Center for Internet of Things in Agriculture, Beijing, China
- College of Information and Electrical Engineering, China Agricultural University, Beijing, China
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22
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Samrat NH, Johnson JB, White S, Naiker M, Brown P. A Rapid Non-Destructive Hyperspectral Imaging Data Model for the Prediction of Pungent Constituents in Dried Ginger. Foods 2022; 11:foods11050649. [PMID: 35267285 PMCID: PMC8909893 DOI: 10.3390/foods11050649] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Revised: 02/18/2022] [Accepted: 02/21/2022] [Indexed: 12/10/2022] Open
Abstract
Ginger is best known for its aromatic odour, spicy flavour and health-benefiting properties. Its flavour is derived primarily from two compound classes (gingerols and shogaols), with the overall quality of the product depending on the interaction between these compounds. Consequently, a robust method for determining the ratio of these compounds would be beneficial for quality control purposes. This study investigated the feasibility of using hyperspectral imaging to rapidly determine the ratio of 6-gingerol to 6-shogoal in dried ginger powder. Furthermore, the performance of several pre-processing methods and two multivariate models was explored. The best-performing models used partial least squares regression (PSLR) and least absolute shrinkage and selection operator (LASSO), using multiplicative scatter correction (MSC) and second derivative Savitzky–Golay (2D-SG) pre-processing. Using the full range of wavelengths (~400–1000 nm), the performance was similar for PLSR (R2 ≥ 0.73, RMSE ≤ 0.29, and RPD ≥ 1.92) and LASSO models (R2 ≥ 0.73, RMSE ≤ 0.29, and RPD ≥ 1.94). These results suggest that hyperspectral imaging combined with chemometric modelling may potentially be used as a rapid, non-destructive method for the prediction of gingerol-to-shogaol ratios in powdered ginger samples.
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Affiliation(s)
- Nahidul Hoque Samrat
- School of Health, Medical and Applied Sciences, Central Queensland University, Bundaberg, QLD 4670, Australia; (S.W.); (P.B.)
- Institute for Future Farming Systems, Central Queensland University, Bundaberg, QLD 4670, Australia
- Correspondence:
| | - Joel B. Johnson
- School of Health, Medical and Applied Sciences, Central Queensland University, Rockhampton, QLD 4701, Australia; (J.B.J.); (M.N.)
- Institute for Future Farming Systems, Central Queensland University, Rockhampton, QLD 4701, Australia
| | - Simon White
- School of Health, Medical and Applied Sciences, Central Queensland University, Bundaberg, QLD 4670, Australia; (S.W.); (P.B.)
- Institute for Future Farming Systems, Central Queensland University, Bundaberg, QLD 4670, Australia
| | - Mani Naiker
- School of Health, Medical and Applied Sciences, Central Queensland University, Rockhampton, QLD 4701, Australia; (J.B.J.); (M.N.)
- Institute for Future Farming Systems, Central Queensland University, Rockhampton, QLD 4701, Australia
| | - Philip Brown
- School of Health, Medical and Applied Sciences, Central Queensland University, Bundaberg, QLD 4670, Australia; (S.W.); (P.B.)
- Institute for Future Farming Systems, Central Queensland University, Bundaberg, QLD 4670, Australia
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23
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Fan KJ, Su WH. Applications of Fluorescence Spectroscopy, RGB- and MultiSpectral Imaging for Quality Determinations of White Meat: A Review. BIOSENSORS 2022; 12:bios12020076. [PMID: 35200337 PMCID: PMC8869398 DOI: 10.3390/bios12020076] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2021] [Revised: 01/21/2022] [Accepted: 01/26/2022] [Indexed: 05/12/2023]
Abstract
Fluorescence spectroscopy, color imaging and multispectral imaging (MSI) have emerged as effective analytical methods for the non-destructive detection of quality attributes of various white meat products such as fish, shrimp, chicken, duck and goose. Based on machine learning and convolutional neural network, these techniques can not only be used to determine the freshness and category of white meat through imaging and analysis, but can also be used to detect various harmful substances in meat products to prevent stale and spoiled meat from entering the market and causing harm to consumer health and even the ecosystem. The development of quality inspection systems based on such techniques to measure and classify white meat quality parameters will help improve the productivity and economic efficiency of the meat industry, as well as the health of consumers. Herein, a comprehensive review and discussion of the literature on fluorescence spectroscopy, color imaging and MSI is presented. The principles of these three techniques, the quality analysis models selected and the research results of non-destructive determinations of white meat quality over the last decade or so are analyzed and summarized. The review is conducted in this highly practical research field in order to provide information for future research directions. The conclusions detail how these efficient and convenient imaging and analytical techniques can be used for non-destructive quality evaluation of white meat in the laboratory and in industry.
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24
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Yang Q, Niu B, Gu S, Ma J, Zhao C, Chen Q, Guo D, Deng X, Yu Y, Zhang F. Rapid Detection of Nonprotein Nitrogen Adulterants in Milk Powder Using Point-Scan Raman Hyperspectral Imaging Technology. ACS OMEGA 2022; 7:2064-2073. [PMID: 35071894 PMCID: PMC8772326 DOI: 10.1021/acsomega.1c05533] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/05/2021] [Accepted: 12/16/2021] [Indexed: 06/14/2023]
Abstract
To develop a rapid detection method for nonprotein nitrogen adulterants, this experiment sets up a set of point-scan Raman hyperspectral imaging systems to qualitatively distinguish and quantitatively and positionally analyze samples spiked with a single nonprotein nitrogen adulterant and samples spiked with a mixture of nine nonprotein nitrogen adulterants at different concentrations (5 × 10-3 to 2.000%, w/w). The results showed that for samples spiked with single nonprotein nitrogen adulterants, the number of pixels corresponding to the adulterant in the region of interest increased linearly with an increase in the analyte concentration, the average coefficient of determination (R 2) was above 0.99, the minimum detection concentration of nonprotein nitrogen adulterants reached 0.010%, and the relative standard deviation (RSD) of the predicted concentration was less than 6%. For the sample spiked with a mixture of nine nonprotein nitrogen adulterants, the standard curve could be used to accurately predict the additive concentration when the additive concentration was greater than 1.200%. The detection method established in this study has good accuracy, high sensitivity, and strong stability. It provides a method for technical implementation of real-time and rapid detection of adulterants in milk powder at the port site and has good application and promotion prospects.
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Affiliation(s)
- Qiaoling Yang
- School
of Environmental and Chemical Engineering, Shanghai University, Shanghai 200444, P. R. China
- School
of Life Sciences, Shanghai University, Shanghai 200444, P. R. China
| | - Bing Niu
- School
of Life Sciences, Shanghai University, Shanghai 200444, P. R. China
| | - Shuqing Gu
- Technical
Center for Animal, Plant and Food Inspection
and Quarantine, Shanghai Customs, Shanghai 200135, P. R. China
| | - Jinge Ma
- Technical
Center for Animal, Plant and Food Inspection
and Quarantine, Shanghai Customs, Shanghai 200135, P. R. China
| | - Chaomin Zhao
- Technical
Center for Animal, Plant and Food Inspection
and Quarantine, Shanghai Customs, Shanghai 200135, P. R. China
| | - Qin Chen
- School
of Life Sciences, Shanghai University, Shanghai 200444, P. R. China
| | - Dehua Guo
- Technical
Center for Animal, Plant and Food Inspection
and Quarantine, Shanghai Customs, Shanghai 200135, P. R. China
| | - Xiaojun Deng
- Technical
Center for Animal, Plant and Food Inspection
and Quarantine, Shanghai Customs, Shanghai 200135, P. R. China
| | - Yongai Yu
- Shanghai
Oceanhood opto-electronics tech Co., LTD., Shanghai 201201, P. R. China
| | - Feng Zhang
- Chinese
Academy of Inspection and Quarantine, Beijing 100176, P. R.
China
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25
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Mahato DK, Pandhi S, Kamle M, Gupta A, Sharma B, Panda BK, Srivastava S, Kumar M, Selvakumar R, Pandey AK, Suthar P, Arora S, Kumar A, Gamlath S, Bharti A, Kumar P. Trichothecenes in food and feed: Occurrence, impact on human health and their detection and management strategies. Toxicon 2022; 208:62-77. [DOI: 10.1016/j.toxicon.2022.01.011] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2021] [Revised: 01/25/2022] [Accepted: 01/27/2022] [Indexed: 12/12/2022]
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26
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Jiang L, Mehedi Hassan M, Jiao T, Li H, Chen Q. Rapid detection of chlorpyrifos residue in rice using surface-enhanced Raman scattering coupled with chemometric algorithm. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 261:119996. [PMID: 34091354 DOI: 10.1016/j.saa.2021.119996] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2021] [Revised: 05/21/2021] [Accepted: 05/21/2021] [Indexed: 06/12/2023]
Abstract
Due to the continuous development and progress of society and more and more attention to the quality and safety of food, rapid testing of pesticides in food is of great significance. In this paper, surface-enhanced Raman spectroscopy (SERS) and chemometric algorithms were employed collectively to quantify chlorpyrifos (CP) residues in rice samples. The SERS spectra from different concentrations (0.01-1000 μg/mL) of CP were collected using AgNPs-deposited-ZnO nanoflower (NFs)-like nanoparticles (Ag@ZnO NFs) SERS sensor. Four quantitative chemometric models for CP were comparatively studied, and the competitive adaptive reweighted sampling-partial least squares model achieved the best prediction and practical applicability for predicting CP levels with a limit of detection of 0.01 µg/mL. The results of the student's t-test showed no significant difference between this method and high-performance liquid chromatography (HPLC), and good relative standard deviation (RSD) indicated that this method could be used for the detection of CP in rice.
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Affiliation(s)
- Lan Jiang
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, PR China
| | - Md Mehedi Hassan
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, PR China
| | - Tianhui Jiao
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, PR China
| | - Huanhuan Li
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, PR China.
| | - Quansheng Chen
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, PR China.
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27
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Luo Y, Jiang X, Fu X. Spatial Frequency Domain Imaging System Calibration, Correction and Application for Pear Surface Damage Detection. Foods 2021; 10:foods10092151. [PMID: 34574261 PMCID: PMC8467129 DOI: 10.3390/foods10092151] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2021] [Revised: 09/02/2021] [Accepted: 09/07/2021] [Indexed: 01/18/2023] Open
Abstract
Spatial frequency domain imaging (SFDI) is a non-contact wide-field optical imaging technique for optical property detection. This study aimed to establish an SFDI system and investigate the effects of system calibration, error analysis and correction on the measurement of optical properties. Optical parameter characteristic measurements of normal pears with three different damage types were performed using the calibrated system. The obtained absorption coefficient μa and the reduced scattering coefficient μ's were used for discriminating pears with different surface damage using a linear discriminant analysis model. The results showed that at 527 nm and 675 nm, the pears' quadruple classification (normal, bruised, scratched and abraded) accuracy using the SFDI technique was 92.5% and 83.8%, respectively, which has an advantage compared with the conventional planar light classification results of 82.5% and 77.5%. The three-way classification (normal, minor damage and serious damage) SFDI technique was as high as 100% and 98.8% at 527 nm and 675 nm, respectively, while the classification accuracy of conventional planar light was 93.8% and 93.8%, respectively. The results of this study indicated that SFDI has the potential to detect different damage types in fruit and that the SFDI technique has a promising future in agricultural product quality inspection in further research.
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Su WH, Xue H. Imaging Spectroscopy and Machine Learning for Intelligent Determination of Potato and Sweet Potato Quality. Foods 2021; 10:2146. [PMID: 34574253 PMCID: PMC8472741 DOI: 10.3390/foods10092146] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2021] [Revised: 08/30/2021] [Accepted: 09/07/2021] [Indexed: 11/16/2022] Open
Abstract
Imaging spectroscopy has emerged as a reliable analytical method for effectively characterizing and quantifying quality attributes of agricultural products. By providing spectral information relevant to food quality properties, imaging spectroscopy has been demonstrated to be a potential method for rapid and non-destructive classification, authentication, and prediction of quality parameters of various categories of tubers, including potato and sweet potato. The imaging technique has demonstrated great capacities for gaining rapid information about tuber physical properties (such as texture, water binding capacity, and specific gravity), chemical components (such as protein, starch, and total anthocyanin), varietal authentication, and defect aspects. This paper emphasizes how recent developments in spectral imaging with machine learning have enhanced overall capabilities to evaluate tubers. The machine learning algorithms coupled with feature variable identification approaches have obtained acceptable results. This review briefly introduces imaging spectroscopy and machine learning, then provides examples and discussions of these techniques in tuber quality determinations, and presents the challenges and future prospects of the technology. This review will be of great significance to the study of tubers using spectral imaging technology.
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Affiliation(s)
- Wen-Hao Su
- Department of Agricultural Engineering, College of Engineering, China Agricultural University, Beijing 100083, China;
| | - Huidan Xue
- School of Economics and Management, Beijing University of Technology, Beijing 100124, China
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29
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Nešić K, Habschied K, Mastanjević K. Possibilities for the Biological Control of Mycotoxins in Food and Feed. Toxins (Basel) 2021; 13:198. [PMID: 33801997 PMCID: PMC8001018 DOI: 10.3390/toxins13030198] [Citation(s) in RCA: 40] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2021] [Revised: 03/04/2021] [Accepted: 03/07/2021] [Indexed: 12/14/2022] Open
Abstract
Seeking useful biological agents for mycotoxin detoxification has achieved success in the last twenty years thanks to the participation of many multidisciplinary teams. We have recently witnessed discoveries in the fields of bacterial genetics (inclusive of next-generation sequencing), protein encoding, and bioinformatics that have helped to shape the latest perception of how microorganisms/mycotoxins/environmental factors intertwine and interact, so the road is opened for new breakthroughs. Analysis of literature data related to the biological control of mycotoxins indicates the ability of yeast, bacteria, fungi and enzymes to degrade or adsorb mycotoxins, which increases the safety and quality of susceptible crops, animal feed and, ultimately, food of animal origin (milk, meat and eggs) by preventing the presence of residues. Microbial detoxification (transformation and adsorption) is becoming a trustworthy strategy that leaves no or less toxic compounds and contributes to food security. This review summarizes the data and highlights the importance and prospects of these methods.
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Affiliation(s)
- Ksenija Nešić
- Institute of Veterinary Medicine of Serbia, Food and Feed Department, Autoput 3, 11070 Beograd, Serbia
| | - Kristina Habschied
- Faculty of Food Technology Osijek, Josip Juraj Strossmayer University of Osijek, F. Kuhača 20, 31000 Osijek, Croatia;
| | - Krešimir Mastanjević
- Faculty of Food Technology Osijek, Josip Juraj Strossmayer University of Osijek, F. Kuhača 20, 31000 Osijek, Croatia;
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30
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Automatic Evaluation of Wheat Resistance to Fusarium Head Blight Using Dual Mask-RCNN Deep Learning Frameworks in Computer Vision. REMOTE SENSING 2020. [DOI: 10.3390/rs13010026] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
In many regions of the world, wheat is vulnerable to severe yield and quality losses from the fungus disease of Fusarium head blight (FHB). The development of resistant cultivars is one means of ameliorating the devastating effects of this disease, but the breeding process requires the evaluation of hundreds of lines each year for reaction to the disease. These field evaluations are laborious, expensive, time-consuming, and are prone to rater error. A phenotyping cart that can quickly capture images of the spikes of wheat lines and their level of FHB infection would greatly benefit wheat breeding programs. In this study, mask region convolutional neural network (Mask-RCNN) allowed for reliable identification of the symptom location and the disease severity of wheat spikes. Within a wheat line planted in the field, color images of individual wheat spikes and their corresponding diseased areas were labeled and segmented into sub-images. Images with annotated spikes and sub-images of individual spikes with labeled diseased areas were used as ground truth data to train Mask-RCNN models for automatic image segmentation of wheat spikes and FHB diseased areas, respectively. The feature pyramid network (FPN) based on ResNet-101 network was used as the backbone of Mask-RCNN for constructing the feature pyramid and extracting features. After generating mask images of wheat spikes from full-size images, Mask-RCNN was performed to predict diseased areas on each individual spike. This protocol enabled the rapid recognition of wheat spikes and diseased areas with the detection rates of 77.76% and 98.81%, respectively. The prediction accuracy of 77.19% was achieved by calculating the ratio of the wheat FHB severity value of prediction over ground truth. This study demonstrates the feasibility of rapidly determining levels of FHB in wheat spikes, which will greatly facilitate the breeding of resistant cultivars.
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