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Li S, Xiang X, Shi Z, Liu WH, Liang G, Zhang Y, Li W. The impact of mixed planting of Poaceae species in the Qinghai-Tibet plateau region on forage yield, soil nutrients, and soil microbial communities. FRONTIERS IN PLANT SCIENCE 2024; 15:1370593. [PMID: 38742217 PMCID: PMC11089163 DOI: 10.3389/fpls.2024.1370593] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Accepted: 03/25/2024] [Indexed: 05/16/2024]
Abstract
Establishing cultivated grassland in the Qinghai-Tibet Plateau region is an effective method to address the conflict between vegetation and livestock. However, the high altitude, low temperature, and arid climate in the region result in slow regeneration and susceptibility to degradation of mixed cultivation grassland containing perennial legumes and gramineous plants. Therefore, we aim to through field experiments, explore the feasibility of establishing mixed cultivation grassland of Poaceae species in the region by utilizing two grass species, Poa pratensis L. and Puccinellia tenuiflora. By employing a mixture of P. pratensis and P. tenuiflora to establish cultivated grassland, we observed significant changes in forage yield over time. Specifically, during the 3rd to 6th years of cultivation, the yield in the mixed grassland was higher than in monocultures. It exceeded the yield of monoculture P. tenuiflora by 19.38% to 29.14% and surpassed the monoculture of P. pratensis by 17.18% to 62.98%. Through the analysis of soil physicochemical properties and soil microbial communities in the cultivated grassland, the study suggests that the mixed grassland with Poaceae species can enhance soil enzyme activity and improve soil microbial communities. Consequently, this leads to increased soil nutrient levels, enhanced nitrogen fixation efficiency, and improved organic phosphorus conversion efficiency. Therefore, establishing mixed grasslands with Poaceae species in the Qinghai-Tibet Plateau region is deemed feasible.
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Affiliation(s)
- Sida Li
- Key Laboratory of Superior Forage Germplasm in the Qinghai‐Tibetan plateau, Qinghai Academy of Animal Science and Veterinary Medicine, Qinghai University, Xining, China
- Laboratory for Research and Utilization of Qinghai Tibet Plateau Germplasm Resources, Xining, Qinghai, China
| | - Xuemei Xiang
- Key Laboratory of Superior Forage Germplasm in the Qinghai‐Tibetan plateau, Qinghai Academy of Animal Science and Veterinary Medicine, Qinghai University, Xining, China
| | - Zhenghai Shi
- Key Laboratory of Superior Forage Germplasm in the Qinghai‐Tibetan plateau, Qinghai Academy of Animal Science and Veterinary Medicine, Qinghai University, Xining, China
- Laboratory for Research and Utilization of Qinghai Tibet Plateau Germplasm Resources, Xining, Qinghai, China
| | - Wen-hui Liu
- Key Laboratory of Superior Forage Germplasm in the Qinghai‐Tibetan plateau, Qinghai Academy of Animal Science and Veterinary Medicine, Qinghai University, Xining, China
- Laboratory for Research and Utilization of Qinghai Tibet Plateau Germplasm Resources, Xining, Qinghai, China
| | - Guoling Liang
- Key Laboratory of Superior Forage Germplasm in the Qinghai‐Tibetan plateau, Qinghai Academy of Animal Science and Veterinary Medicine, Qinghai University, Xining, China
- Laboratory for Research and Utilization of Qinghai Tibet Plateau Germplasm Resources, Xining, Qinghai, China
| | - Yongchao Zhang
- Key Laboratory of Superior Forage Germplasm in the Qinghai‐Tibetan plateau, Qinghai Academy of Animal Science and Veterinary Medicine, Qinghai University, Xining, China
- Laboratory for Research and Utilization of Qinghai Tibet Plateau Germplasm Resources, Xining, Qinghai, China
| | - Wen Li
- Key Laboratory of Superior Forage Germplasm in the Qinghai‐Tibetan plateau, Qinghai Academy of Animal Science and Veterinary Medicine, Qinghai University, Xining, China
- Laboratory for Research and Utilization of Qinghai Tibet Plateau Germplasm Resources, Xining, Qinghai, China
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Wang Z, Cui T, Wang Q. Optimization of degradation conditions and analysis of degradation mechanism for nitrite by Bacillus aryabhattai 47. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 921:171096. [PMID: 38387569 DOI: 10.1016/j.scitotenv.2024.171096] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2023] [Revised: 02/17/2024] [Accepted: 02/17/2024] [Indexed: 02/24/2024]
Abstract
Excessive nitrite levels cause significant damage to aquaculture, making it crucial to explore green and reliable nitrite removal technologies. In this study, A Bacillus aryabhattai (designated as the strain 47) isolated from aquaculture wastewater was used as the experimental strain. The nitrite degradation conditions of the strain 47 were optimized, and the optimal conditions are: glucose was 12.74 g/L, fermented special soybean meal was 21.27 g/L, MgCl2 369 mg/L, pH 7.0, incubated at 30 °C with the inoculum size of 2 % and the rotation speed of 170 rpm. Under the optimal conditions, the nitrite concentration of the culture solution was 200 mg/L, and the nitrite removal rate reached 91.4 %. Meanwhile, the mechanism by which Mg2+ enhanced the nitrite degradation ability of the strain 47 was investigated by transcriptomics. An operon structure directed cellular trafficking of Mg2+, and then, the Mg2+-mediated catalytic reaction of multiple enzymes enhanced and improved cellular metabolic processes (e.g. the transport and metabolism of nitrite, central carbohydrate metabolism oxidative phosphorylation). At the same time, with the progress of cell metabolism, cells secreted a series of enzymes related to nitrite transport and metabolism to promote the metabolism of nitrite. And the process of the assimilated nitrate reduction pathway of nitrite degradation in the strain 47 was elaborated at the transcriptome level. This study provided a new insight into nitrite treatment mediated by microbial organisms.
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Affiliation(s)
- Zhenhao Wang
- School of Biology and Biological Engineering, South China University of Technology, Guangzhou 510006, PR China
| | - Tangbing Cui
- School of Biology and Biological Engineering, South China University of Technology, Guangzhou 510006, PR China.
| | - Qiang Wang
- Guangdong Yuzanchen Biotechnology Co., Ltd, Jiangmen 529100, PR China
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3
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Dong J, Yang B, Wang H, Cao X, He F, Wang L. Reveal molecular mechanism on the effects of silver nanoparticles on nitrogen transformation and related functional microorganisms in an agricultural soil. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 904:166765. [PMID: 37660816 DOI: 10.1016/j.scitotenv.2023.166765] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Revised: 08/29/2023] [Accepted: 08/31/2023] [Indexed: 09/05/2023]
Abstract
Silver nanoparticles (AgNPs) are widely present in aquatic and soil environment, raising significant concerns about their impacts on creatures in ecosystem. While the toxicity of AgNPs on microorganisms has been reported, their effects on biogeochemical processes and specific functional microorganisms remain relatively unexplored. In this study, a 28-day microcosmic experiment was conducted to investigate the dose-dependent effects of AgNPs (10 mg and 100 mg Ag kg-1 soil) on nitrogen transformation and functional microorganisms in agricultural soils. The molecular mechanisms were uncovered by examining change in functional microorganisms and metabolic pathways. To enable comparison, the toxicity of positive control with an equivalent Ag+ dose from CH3COOAg was also included. The results indicated that both AgNPs and CH3COOAg enhanced nitrogen fixation and nitrification, corresponding to increased relative abundances of associated functional genes. However, they inhibited denitrification via downregulating nirS, nirK, and nosZ genes as well as reducing nitrate and nitrite reductase activities. In contrast to high dose of AgNPs, low levels increased bacterial diversity. AgNPs and CH3COOAg altered the activities of associated metabolic pathways, resulting in the enrichment of specific taxa that demonstrated tolerance to Ag. At genus level, AgNPs increased the relative abundances of nitrogen-fixing Microvirga and Bacillus by 0.02 %-629.39 % and 14.44 %-30.10 %, respectively, compared with control group (CK). The abundances of denitrifying bacteria, such as Rhodoplanes, Pseudomonas, and Micromonospora, decreased by 19.03 % to 32.55 %, 24.73 % to 50.05 %, and 15.66 % to 76.06 %, respectively, compared to CK. CH3COOAg reduced bacterial network complexity, diminished the symbiosis mode compared to AgNPs. The prediction of genes involved in metabolic pathways related to membrane transporter and cell motility showed sensitive to AgNPs exposure in the soil. Further studies involving metabolomics are necessary to reveal the essential effects of AgNPs and CH3COOAg on biogeochemical cycle of elements in agricultural soil.
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Affiliation(s)
- Jinhao Dong
- School of Water Conservancy and Environment, University of Jinan, Jinan 250022, China
| | - Baoshan Yang
- School of Water Conservancy and Environment, University of Jinan, Jinan 250022, China; Shandong Provincial Engineering Technology Research Center for Ecological Carbon Sink and Capture Utilization, Jinan 250022, China.
| | - Hui Wang
- School of Water Conservancy and Environment, University of Jinan, Jinan 250022, China; Shandong Provincial Engineering Technology Research Center for Ecological Carbon Sink and Capture Utilization, Jinan 250022, China.
| | - Xinlei Cao
- School of Water Conservancy and Environment, University of Jinan, Jinan 250022, China
| | - Fei He
- Jinan Environmental Research Academy, Jinan 250098, China
| | - Lijiao Wang
- School of Water Conservancy and Environment, University of Jinan, Jinan 250022, China
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4
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Zhang S, Pei L, Zhao Y, Shan J, Zheng X, Xu G, Sun Y, Wang F. Effects of microplastics and nitrogen deposition on soil multifunctionality, particularly C and N cycling. JOURNAL OF HAZARDOUS MATERIALS 2023; 451:131152. [PMID: 36934700 DOI: 10.1016/j.jhazmat.2023.131152] [Citation(s) in RCA: 28] [Impact Index Per Article: 28.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2023] [Revised: 02/18/2023] [Accepted: 03/03/2023] [Indexed: 06/18/2023]
Abstract
Both nitrogen deposition (ND) and microplastics (MPs) pose global change challenges. The effects of MPs co-existing with ND on ecosystem functions are still largely unknown. Herein, we conducted a 10-month soil incubation experiment to explore the effects of polyethylene (PE) and polylactic acid (PLA) MPs on soil multifunctionality under different ND scenarios. We found that the interactions between ND and MPs affected soil multifucntionality. FAPROTAX function prediction indicated that both ND and MPs affected C and N cycling. ND increased some C-cycling processes, such as cellulolysis, ligninolysis, and plastic degradation. MPs also showed stimulating effects on these processes, particularly in the soil with ND. ND significantly decreased the abundance of functional genes NifH, amoA, and NirK, leading to inhibited N-fixation, nitrification, and denitrification. The addition of MPs also modified N-cycling processes: 0.1% PE enriched the bacterial groups for nitrate reduction, nitrate respiration, nitrite respiration, and nitrate ammonification, and 1% PLA MPs enriched N-fixation bacteria at all ND levels. We found that ND caused lower soil pH but higher soil N, decreased bacterial diversity and richness, and changed the composition and activity of functional bacteria, which explains why ND changed soil functions and regulated the impact of MPs.
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Affiliation(s)
- Shuwu Zhang
- College of Environment and Safety Engineering, Qingdao University of Science and Technology, Qingdao, Shandong Province 266042, PR China
| | - Lei Pei
- College of Environment and Safety Engineering, Qingdao University of Science and Technology, Qingdao, Shandong Province 266042, PR China
| | - Yanxin Zhao
- College of Environment and Safety Engineering, Qingdao University of Science and Technology, Qingdao, Shandong Province 266042, PR China
| | - Jun Shan
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Xuebo Zheng
- Key Laboratory of Tobacco Biology and Processing, Ministry of Agriculture and Rural Affairs, Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao 266101, China
| | - Guangjian Xu
- College of Environment and Safety Engineering, Qingdao University of Science and Technology, Qingdao, Shandong Province 266042, PR China
| | - Yuhuan Sun
- College of Environment and Safety Engineering, Qingdao University of Science and Technology, Qingdao, Shandong Province 266042, PR China
| | - Fayuan Wang
- College of Environment and Safety Engineering, Qingdao University of Science and Technology, Qingdao, Shandong Province 266042, PR China.
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5
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Yılmaz H, İbici HN, Erdoğan EM, Türedi Z, Ergenekon P, Özkan M. Nitrite is reduced by nitrite reductase NirB without small subunit NirD in Escherichia coli. J Biosci Bioeng 2022; 134:393-398. [PMID: 36068114 DOI: 10.1016/j.jbiosc.2022.07.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Revised: 07/24/2022] [Accepted: 07/25/2022] [Indexed: 11/26/2022]
Abstract
The assimilatory nitrite reductase enzyme NirB and small subunit NirD genes encoded in nir operon in Escherichia coli were cloned into the pET28a vector, and the recombinant enzyme was characterized for the first time. Docking of NirB with NirD, NADH, NO2-, NO3-, and CHO2- was performed using docking modeling programs. Methyl viologen and sodium dithionite were used as electron couples, and the amount of reduced nitrite was measured to calculate enzyme activity. NirB is the main enzyme and shows high activity with or without NirD. However, the inclusion of NirD into the enzyme solution at a ratio of 1NirD:2NirB resulted in 10% higher nitrite reductase activity. The enzyme tends to aggregate in the absence of β-mercaptoethanol, which causes the conversion of tetrameric NirB to monomeric form, and the NirB enzyme shows its highest activity in monomeric form. The optimum temperature for enzyme activity was 37 °C and the optimum pH was found to be 7.0. Km and Vmax values of NirB were calculated as 9833 μM and 416.67 μmol NO2- reduced min-1 mg-1. Enzyme activity decreased by 55% and 50% in the presence of 100 mM nitrate and formate, respectively. The presence of 25 mM Cd2+ protected the enzyme at room temperature and the enzyme showed 10% higher activity in the presence of cadmium.
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Affiliation(s)
- Hilal Yılmaz
- Gebze Technical University, Environmental Engineering Department, 41400 Kocaeli, Turkey.
| | - Hilal Nisanur İbici
- Gebze Technical University, Environmental Engineering Department, 41400 Kocaeli, Turkey.
| | - Esra Meşe Erdoğan
- Gebze Technical University, Environmental Engineering Department, 41400 Kocaeli, Turkey.
| | - Zeynep Türedi
- Gebze Technical University, Environmental Engineering Department, 41400 Kocaeli, Turkey.
| | - Pınar Ergenekon
- Gebze Technical University, Environmental Engineering Department, 41400 Kocaeli, Turkey.
| | - Melek Özkan
- Gebze Technical University, Environmental Engineering Department, 41400 Kocaeli, Turkey.
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Zhang H, Chen X, Song L, Liu S, Li P. The mechanism by which Enteromorpha Linza polysaccharide promotes Bacillus subtilis growth and nitrate removal. Int J Biol Macromol 2022; 209:840-849. [PMID: 35439475 DOI: 10.1016/j.ijbiomac.2022.04.082] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2022] [Revised: 04/11/2022] [Accepted: 04/11/2022] [Indexed: 11/15/2022]
Abstract
In this study, we discussed the relationship between Entermorpha linza polysaccharide (EP) and Bacillus subtilis, which can transform nitrate. A sole carbon source experiment showed that Bacillus subtilis could utilize EP, and the bacterial density was maximally increased by 54.43% in the EP groups. The results of reducing sugar determination proved the secretion of polysaccharide-degrading enzymes. Scanning electron microscopy (SEM) showed that the EP groups had fewer spores and shrunken bacteria, indicating that EP could improve the growth environment and maintain bacterial integrity. Additionally, the ratios of periplasmic nitrate reductase (NAP), nitrite reductase (NIR), and dissimilatory nitrate reductase (D-NRase) in the EP groups were maximally increased by 107.22%, 84.70% and 36.10%, respectively. Transcriptome analysis further confirmed the above mentioned results. For example, the high expression of quorum sensing genes indicated that EP groups had higher bacterial density. Moreover, the high expression of antioxidant genes in the EP groups may be related to morphological integrity. Our study provides a basis for further discussion of the mechanism.
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Affiliation(s)
- Hui Zhang
- CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Center for Ocean Mega-Science, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; College of Marine Science and Biological Engineering, Qingdao University of Science and Technology, Qingdao 266042, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xiaolin Chen
- CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Center for Ocean Mega-Science, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; Laboratory for Marine Drugs and Bioproducts, Pilot National Laboratory for Marine Science and Technology (Qingdao), No. 1 Wenhai Road, Qingdao 266237, China.
| | - Lin Song
- College of Marine Science and Biological Engineering, Qingdao University of Science and Technology, Qingdao 266042, China
| | - Song Liu
- CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Center for Ocean Mega-Science, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; Laboratory for Marine Drugs and Bioproducts, Pilot National Laboratory for Marine Science and Technology (Qingdao), No. 1 Wenhai Road, Qingdao 266237, China
| | - Pengcheng Li
- CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Center for Ocean Mega-Science, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; Laboratory for Marine Drugs and Bioproducts, Pilot National Laboratory for Marine Science and Technology (Qingdao), No. 1 Wenhai Road, Qingdao 266237, China.
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8
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Chugh B, Sheetal, Singh M, Thakur S, Pani B, Singh AK, Saji VS. Extracellular Electron Transfer by Pseudomonas aeruginosa in Biocorrosion: A Review. ACS Biomater Sci Eng 2022; 8:1049-1059. [PMID: 35199512 DOI: 10.1021/acsbiomaterials.1c01645] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Microorganisms with extracellular electron transfer (EET) capability have gained significant attention for their different biotechnological applications, like biosensors, bioremediation, and microbial fuel cells. Current research affirmed that microbial EET potentially promotes corrosion of iron structures, termed microbiologically influenced corrosion (MIC). The sulfate-reducing (SRB) and nitrate-reducing (NRB) bacteria are the most investigated among the different MIC-promoting bacteria. Unlike extensively studied SRB corrosion, NRB corrosion has received less attention from researchers. Hence, this review focuses on EET by Pseudomonas aeruginosa, a pervasive bacterium competent for developing biofilms in marine habitats and oil pipelines. A comprehensive discussion on the fundamentals of EET mechanisms in MIC is provided first. After that, the review offers state-of-the-art insights into the latest research on the EET-assisted MIC by Pseudomonas aeruginosa. The role of electron transfer mediators has also been discussed to understand the mechanisms involved in a better way. This review will be beneficial to open up new opportunities for developing strategies for combating biocorrosion.
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Affiliation(s)
- Bhawna Chugh
- Department of Chemistry, Netaji Subhas University of Technology, Sector-3, Dwarka, New Delhi-110078, India
| | - Sheetal
- Department of Chemistry, Netaji Subhas University of Technology, Sector-3, Dwarka, New Delhi-110078, India
| | - Manjeet Singh
- Department of Chemistry, School of Physical Sciences, Mizoram University, Aizawl, Mizoram-796004, India
| | - Sanjeeve Thakur
- Department of Chemistry, Netaji Subhas University of Technology, Sector-3, Dwarka, New Delhi-110078, India
| | - Balaram Pani
- Department of Chemistry, Bhaskaracharya College of Applied Sciences, University of Delhi, Sector -2, Dwarka, New Delhi-110075, India
| | - Ashish Kumar Singh
- Department of Chemistry, Netaji Subhas University of Technology, Sector-3, Dwarka, New Delhi-110078, India.,Department of Applied Sciences, Bharati Vidyapeeth's College of Engineering, Paschim Vihar, New Delhi-110063, India
| | - Viswanathan S Saji
- Interdisciplinary Research Center for Advanced Materials, King Fahd University of Petroleum & Minerals, Dhahran 31261, Saudi Arabia
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9
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Wang B, Chu S, Liu X, Zhang D, Chai X, Yang X, Zhi Y, Chi Y, Zhou P. Changes in soil bacterial and fungal communities in response to Bacillus megaterium NCT-2 inoculation in secondary salinized soil. PeerJ 2021; 9:e12309. [PMID: 34721987 PMCID: PMC8519178 DOI: 10.7717/peerj.12309] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2021] [Accepted: 09/23/2021] [Indexed: 11/20/2022] Open
Abstract
Background Secondary salinized soil in greenhouses often contains excess nitrate. Inoculation of Bacillus megaterium NCT-2 with nitrate assimilation ability represents an attractive approach for soil remediation. However, the effects of NCT-2 on the structure and function of soil microbial communities have not been explored. Methods Greenhouse experiments were carried out to investigate changes in soil properties, Brassica chinensis L. growth, bacterial, and fungal community structure and function in response to NCT-2 inoculation. Results The NCT-2 inoculant significantly reduced the nitrate content in B. chinensis and inhibited the rebound of soil nitrate in the later stage. The shifts of bacterial community structure and function by NCT-2 was negligible, and a greater disturbance of soil fungal community structure and function was observed, for example the strong inhibitory effect on ectomycorrhizal fungi. These results indicated that the NCT-2 inoculant likely achieved the remediation effect in secondary salinized soil by shifting fungal community. The present findings add to the current understanding of microbial interactions in response to bacterial inoculation and can be of great significance for the application of NCT-2 inoculants in secondary salinized soil remediation.
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Affiliation(s)
- Bin Wang
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.,Key Laboratory of Urban Agriculture, Ministry of Agriculture and Rural Affairs, Shanghai, China.,Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, China
| | - Shaohua Chu
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.,Key Laboratory of Urban Agriculture, Ministry of Agriculture and Rural Affairs, Shanghai, China.,Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, China
| | - Xiaorui Liu
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.,Key Laboratory of Urban Agriculture, Ministry of Agriculture and Rural Affairs, Shanghai, China.,Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, China
| | - Dan Zhang
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.,Key Laboratory of Urban Agriculture, Ministry of Agriculture and Rural Affairs, Shanghai, China.,Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, China
| | - Xiaotong Chai
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.,Key Laboratory of Urban Agriculture, Ministry of Agriculture and Rural Affairs, Shanghai, China.,Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, China
| | - Xijia Yang
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.,Key Laboratory of Urban Agriculture, Ministry of Agriculture and Rural Affairs, Shanghai, China.,Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, China
| | - Yuee Zhi
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.,Key Laboratory of Urban Agriculture, Ministry of Agriculture and Rural Affairs, Shanghai, China.,Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, China
| | - Yaowei Chi
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.,Key Laboratory of Urban Agriculture, Ministry of Agriculture and Rural Affairs, Shanghai, China.,Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, China
| | - Pei Zhou
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.,Key Laboratory of Urban Agriculture, Ministry of Agriculture and Rural Affairs, Shanghai, China.,Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, China
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Vargas-Maya NI, Padilla-Vaca F, Romero-González OE, Rosales-Castillo EAS, Rangel-Serrano Á, Arias-Negrete S, Franco B. Refinement of the Griess method for measuring nitrite in biological samples. J Microbiol Methods 2021; 187:106260. [PMID: 34090997 DOI: 10.1016/j.mimet.2021.106260] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2021] [Revised: 05/30/2021] [Accepted: 05/30/2021] [Indexed: 12/19/2022]
Abstract
Nitric oxide (NO) is a reactive gas that participates in many physiological as well as pathogenic processes in higher eukaryotic organisms. Inflammatory responses elicit higher levels of this molecule. Nevertheless, there are many technical challenges to accurately measure the amount of NO produced. Previously, a method using whole-cell extracts from Escherichia coli was able to generate the conversion of nitrate into nitrite to measure the amount of nitrate or indirectly the NO present in a sample using the Griess reaction. Here we present an improvement to this method, by using E. coli whole-cell extracts lacking one of the two nitrite reductases, rendered a more precise measurement when coupled with the Griess reaction than our previous report. Alternatively, osmotic stress showed to downregulate the expression of both nitrate reductases, which can be an alternative for indirect nitrate and NO reduction. The results presented here show an easy method for nitrate and NO reduction to nitrite and avoid the reconversion to nitrate, also as an alternative for other analytical methods that are based on cadmium, purified nitrate reductase enzyme, or salicylic methods to reduce NO. This method can be widely used for measuring NO production in living organisms, soil, and other relevant microbiological samples.
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Affiliation(s)
- Naurú Idalia Vargas-Maya
- Departamento de Biología, División de Ciencias Naturales y Exactas, Universidad de Guanajuato, Noria Alta S/N 36050, Guanajuato, Gto, Mexico
| | - Felipe Padilla-Vaca
- Departamento de Biología, División de Ciencias Naturales y Exactas, Universidad de Guanajuato, Noria Alta S/N 36050, Guanajuato, Gto, Mexico
| | - Oscar E Romero-González
- Departamento de Biología, División de Ciencias Naturales y Exactas, Universidad de Guanajuato, Noria Alta S/N 36050, Guanajuato, Gto, Mexico
| | | | - Ángeles Rangel-Serrano
- Departamento de Biología, División de Ciencias Naturales y Exactas, Universidad de Guanajuato, Noria Alta S/N 36050, Guanajuato, Gto, Mexico
| | - Sergio Arias-Negrete
- Departamento de Biología, División de Ciencias Naturales y Exactas, Universidad de Guanajuato, Noria Alta S/N 36050, Guanajuato, Gto, Mexico.
| | - Bernardo Franco
- Departamento de Biología, División de Ciencias Naturales y Exactas, Universidad de Guanajuato, Noria Alta S/N 36050, Guanajuato, Gto, Mexico.
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11
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Zhao N, Lai H, Wang Y, Huang Y, Shi Q, He W, Zhu S, Li Y, Zhu Y, Li H, Ge L. Assessment of biogenic amine and nitrite production in low-salt Paocai during fermentation as affected by reused brine and fresh brine. FOOD BIOSCI 2021. [DOI: 10.1016/j.fbio.2021.100958] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
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12
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Li X, Zhang B, Zhang D, Liu S, Ren J. The construction of recombinant Lactobacillus casei vaccine of PEDV and its immune responses in mice. BMC Vet Res 2021; 17:184. [PMID: 33947419 PMCID: PMC8097780 DOI: 10.1186/s12917-021-02885-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2020] [Accepted: 04/15/2021] [Indexed: 01/18/2023] Open
Abstract
BACKGROUND Porcine epidemic diarrhea (PED) is a contagious intestinal disease caused by porcine epidemic diarrhea virus (PEDV) characterized by vomiting, diarrhea, anorexia, and dehydration, which have caused huge economic losses around the world. At present, vaccine immunity is still the most effective method to control the spread of PED. In this study, we have constructed a novel recombinant L. casei-OMP16-PEDVS strain expressing PEDVS protein of PEDV and OMP16 protein of Brucella abortus strain. To know the immunogenicity of the recombinant L. casei-OMP16-PEDVS candidate vaccine, it was compared with BL21-OMP16-PEDVS-F, BL21-OMP16-PEDVS, and BL21-PEDVS recombinant protein. RESULTS The results showed that we could detect higher levels of IgG, neutralizing antibody, IL-4, IL-10, and INF-γ in serum and IgA in feces of L. casei-OMP16-PEDVS immunized mice, which indicated that L. casei-OMP16-PEDVS candidate vaccine could induce higher levels of humoral immunity, cellular immunity, and mucosal immunity. CONCLUSION Therefore, L. casei-OMP16-PEDVS is a promising candidate vaccine for prophylaxis of PEDV infection.
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Affiliation(s)
- Xiaowen Li
- Swine Research Institute of New Hope Group, Tai'an, China
- Shandong Swine Herd Health Big Data and Intelligent Monitoring Engineering Laboratory, Tai'an, China
- College of Animal Science and Technology, Shandong Agricultural University, Tai'an, China
| | - Bingzhou Zhang
- Swine Research Institute of New Hope Group, Tai'an, China
- Shandong Swine Herd Health Big Data and Intelligent Monitoring Engineering Laboratory, Tai'an, China
| | | | - Sidang Liu
- College of Animal Science and Technology, Shandong Agricultural University, Tai'an, China.
| | - Jing Ren
- Shandong Swine Herd Health Big Data and Intelligent Monitoring Engineering Laboratory, Tai'an, China.
- Shandong Provincial Key Laboratory of Biophysics, Institute of Biophysics, Dezhou University, Dezhou, 253023, China.
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13
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Expression, characterization and molecular docking of the assimilatory NaDH-nitrite reductase from Acidovorax wautersii QZ-4. Biochem Eng J 2020. [DOI: 10.1016/j.bej.2020.107589] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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14
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Microbiologically influenced corrosion of 304 stainless steel by nitrate reducing Bacillus cereus in simulated Beijing soil solution. Bioelectrochemistry 2020; 133:107477. [DOI: 10.1016/j.bioelechem.2020.107477] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2019] [Revised: 01/27/2020] [Accepted: 01/29/2020] [Indexed: 12/29/2022]
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15
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Functional mononuclear molybdenum enzymes: challenges and triumphs in molecular cloning, expression, and isolation. J Biol Inorg Chem 2020; 25:547-569. [PMID: 32279136 DOI: 10.1007/s00775-020-01787-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2020] [Accepted: 03/30/2020] [Indexed: 10/24/2022]
Abstract
Mononuclear molybdenum enzymes catalyze a variety of reactions that are essential in the cycling of nitrogen, carbon, arsenic, and sulfur. For decades, the structure and function of these crucial enzymes have been investigated to develop a fundamental knowledge for this vast family of enzymes and the chemistries they carry out. Therefore, obtaining abundant quantities of active enzyme is necessary for exploring this family's biochemical capability. This mini-review summarizes the methods for overexpressing mononuclear molybdenum enzymes in the context of the challenges encountered in the process. Effective methods for molybdenum cofactor synthesis and incorporation, optimization of expression conditions, improving isolation of active vs. inactive enzyme, incorporation of additional prosthetic groups, and inclusion of redox enzyme maturation protein chaperones are discussed in relation to the current molybdenum enzyme literature. This article summarizes the heterologous and homologous expression studies providing underlying patterns and potential future directions.
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16
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Genomic Analysis of Bacillus megaterium NCT-2 Reveals Its Genetic Basis for the Bioremediation of Secondary Salinization Soil. Int J Genomics 2020; 2020:4109186. [PMID: 32190639 PMCID: PMC7066406 DOI: 10.1155/2020/4109186] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2019] [Revised: 02/01/2020] [Accepted: 02/08/2020] [Indexed: 12/17/2022] Open
Abstract
Bacillus megaterium NCT-2 is a nitrate-uptake bacterial, which shows high bioremediation capacity in secondary salinization soil, including nitrate-reducing capacity, phosphate solubilization, and salinity adaptation. To gain insights into the bioremediation capacity at the genetic level, the complete genome sequence was obtained by using a multiplatform strategy involving HiSeq and PacBio sequencing. The NCT-2 genome consists of a circular chromosome of 5.19 Mbp and ten indigenous plasmids, totaling 5.88 Mbp with an average GC content of 37.87%. The chromosome encodes 5,606 genes, 142 tRNAs, and 53 rRNAs. Genes involved in the features of the bioremediation in secondary salinization soil and plant growth promotion were identified in the genome, such as nitrogen metabolism, phosphate uptake, the synthesis of organic acids and phosphatase for phosphate-solubilizing ability, and Trp-dependent IAA synthetic system. Furthermore, strain NCT-2 has great ability of adaption to environments due to the genes involved in cation transporters, osmotic stress, and oxidative stress. This study sheds light on understanding the molecular basis of using B. megaterium NCT-2 in bioremediation of the secondary salinization soils.
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17
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Tan W, Liao TH, Wang J, Ye Y, Wei YC, Zhou HK, Xiao Y, Zhi XY, Shao ZH, Lyu LD, Zhao GP. A recently evolved diflavin-containing monomeric nitrate reductase is responsible for highly efficient bacterial nitrate assimilation. J Biol Chem 2020; 295:5051-5066. [PMID: 32111737 DOI: 10.1074/jbc.ra120.012859] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2020] [Revised: 02/25/2020] [Indexed: 12/11/2022] Open
Abstract
Nitrate is one of the major inorganic nitrogen sources for microbes. Many bacterial and archaeal lineages have the capacity to express assimilatory nitrate reductase (NAS), which catalyzes the rate-limiting reduction of nitrate to nitrite. Although a nitrate assimilatory pathway in mycobacteria has been proposed and validated physiologically and genetically, the putative NAS enzyme has yet to be identified. Here, we report the characterization of a novel NAS encoded by Mycolicibacterium smegmatis Msmeg_4206, designated NasN, which differs from the canonical NASs in its structure, electron transfer mechanism, enzymatic properties, and phylogenetic distribution. Using sequence analysis and biochemical characterization, we found that NasN is an NADPH-dependent, diflavin-containing monomeric enzyme composed of a canonical molybdopterin cofactor-binding catalytic domain and an FMN-FAD/NAD-binding, electron-receiving/transferring domain, making it unique among all previously reported hetero-oligomeric NASs. Genetic studies revealed that NasN is essential for aerobic M. smegmatis growth on nitrate as the sole nitrogen source and that the global transcriptional regulator GlnR regulates nasN expression. Moreover, unlike the NADH-dependent heterodimeric NAS enzyme, NasN efficiently supports bacterial growth under nitrate-limiting conditions, likely due to its significantly greater catalytic activity and oxygen tolerance. Results from a phylogenetic analysis suggested that the nasN gene is more recently evolved than those encoding other NASs and that its distribution is limited mainly to Actinobacteria and Proteobacteria. We observed that among mycobacterial species, most fast-growing environmental mycobacteria carry nasN, but that it is largely lacking in slow-growing pathogenic mycobacteria because of multiple independent genomic deletion events along their evolution.
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Affiliation(s)
- Wei Tan
- Department of Microbiology and Li Ka Shing Institute of Health Sciences, The Chinese University of Hong Kong, Prince of Wales Hospital, Shatin, Hong Kong 999077, China.,Key Laboratory of Medical Molecular Virology (MOE/NHC/CAMS), School of Basic Medical Sciences and Department of Microbiology and Microbial Engineering, School of Life Sciences, Fudan University, Shanghai 200032, China
| | - Tian-Hua Liao
- Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China
| | - Jin Wang
- College of Life Sciences, Shanghai Normal University, Shanghai 200234, China
| | - Yu Ye
- Department of Microbiology and Li Ka Shing Institute of Health Sciences, The Chinese University of Hong Kong, Prince of Wales Hospital, Shatin, Hong Kong 999077, China
| | - Yu-Chen Wei
- Department of Microbiology and Li Ka Shing Institute of Health Sciences, The Chinese University of Hong Kong, Prince of Wales Hospital, Shatin, Hong Kong 999077, China
| | - Hao-Kui Zhou
- Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China
| | - Youli Xiao
- CAS Key Laboratory of Synthetic Biology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
| | - Xiao-Yang Zhi
- Yunnan Institute of Microbiology, School of Life Sciences, Yunnan University, Kunming 650091, China
| | - Zhi-Hui Shao
- CAS Key Laboratory of Synthetic Biology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
| | - Liang-Dong Lyu
- Key Laboratory of Medical Molecular Virology (MOE/NHC/CAMS), School of Basic Medical Sciences and Department of Microbiology and Microbial Engineering, School of Life Sciences, Fudan University, Shanghai 200032, China
| | - Guo-Ping Zhao
- Department of Microbiology and Li Ka Shing Institute of Health Sciences, The Chinese University of Hong Kong, Prince of Wales Hospital, Shatin, Hong Kong 999077, China .,Key Laboratory of Medical Molecular Virology (MOE/NHC/CAMS), School of Basic Medical Sciences and Department of Microbiology and Microbial Engineering, School of Life Sciences, Fudan University, Shanghai 200032, China.,Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China.,CAS Key Laboratory of Synthetic Biology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China.,Bio-Med Big Data Center, Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institute of Nutrition and Health, Shanghai Institutes for Biological Sciences, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai 200031, China.,Shanghai-MOST Key Laboratory for Health and Disease Genomics, Chinese National Human Genome Center, Shanghai 201203, China
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18
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Martínez-Espinosa RM. Heterologous and Homologous Expression of Proteins from Haloarchaea: Denitrification as Case of Study. Int J Mol Sci 2019; 21:E82. [PMID: 31877629 PMCID: PMC6981372 DOI: 10.3390/ijms21010082] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2019] [Revised: 12/05/2019] [Accepted: 12/18/2019] [Indexed: 12/23/2022] Open
Abstract
Haloarchaea (halophilic microbes belonging to the Archaea domain) are microorganisms requiring mid or even high salt concentrations to be alive. The molecular machinery of these organisms is adapted to such conditions, which are stressful for most life forms. Among their molecular adaptations, halophilic proteins are characterized by their high content of acidic amino acids (Aspartate (Asp) and glumate (Glu)), being only stable in solutions containing high salt concentration (between 1 and 4 M total salt concentration). Recent knowledge about haloarchaeal peptides, proteins, and enzymes have revealed that many haloarchaeal species produce proteins of interest due to their potential applications in biotechnology-based industries. Although proteins of interest are usually overproduced in recombinant prokaryotic or eukaryotic expression systems, these procedures do not accurately work for halophilic proteins, mainly if such proteins contain metallocofactors in their structures. This work summarizes the main challenges of heterologous and homologous expression of enzymes from haloarchaea, paying special attention to the metalloenzymes involved in the pathway of denitrification (anaerobic reduction of nitrate to dinitrogen), a pathway with significant implications in wastewater treatment, climate change, and biosensor design.
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Affiliation(s)
- Rosa María Martínez-Espinosa
- Biochemistry and Molecular Biology Division, Agrochemistry and Biochemistry Department, Faculty of Sciences and Multidisciplinary Institute for Environmental Studies (IMEM), University of Alicante, Ap. 99, E-03080 Alicante, Spain
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19
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Chi Y, Wang D, Jiang M, Chu S, Wang B, Zhi Y, Zhou P, Zhang D. Microencapsulation of Bacillus megaterium NCT-2 and its effect on remediation of secondary salinization soil. J Microencapsul 2019; 37:134-143. [PMID: 31847637 DOI: 10.1080/02652048.2019.1705409] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Abstract
Aim: To prolong the shelf life of Bacillus megaterium NCT-2 by preparing microcapsules through spray drying, and evaluate their efficiency in secondary salinisation soil remediation.Methods: The wall material and spray drying conditions were optimised. Morphological characteristics of microcapsule were measured, and soil remediation effects were tested under field conditions.Results: A relatively higher survival rate of B. megaterium microcapsule was obtained with 1:1 of chitosan/maltodextrin (w/w) when spray drying was performed at 150.0 °C, with the feed flow rates of 800 mL h-1 and 1000 mL h-1, respectively. The span value of 0.93 ± 0.01 was obtained under above conditions. Microcapsule survival rate was 64.09 ± 0.12% after 6 months of storage. Moreover, microcapsule successfully decreased NO3- and EC value in strongly saline soil by 46.5 ± 1.48% and 45.2 ± 1.51%, respectively.Conclusion: Bacillus megaterium NCT-2 microcapsules have application potential in the remediation of secondary salinisation soil.
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Affiliation(s)
- Yaowei Chi
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.,Ministry of Agriculture and Rural Affairs, Key Laboratory of Urban Agriculture, Shanghai, China
| | - Daxin Wang
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.,Ministry of Agriculture and Rural Affairs, Key Laboratory of Urban Agriculture, Shanghai, China
| | - Miao Jiang
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.,Ministry of Agriculture and Rural Affairs, Key Laboratory of Urban Agriculture, Shanghai, China
| | - Shaohua Chu
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.,Ministry of Agriculture and Rural Affairs, Key Laboratory of Urban Agriculture, Shanghai, China
| | - Bin Wang
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.,Ministry of Agriculture and Rural Affairs, Key Laboratory of Urban Agriculture, Shanghai, China
| | - Yuee Zhi
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.,Ministry of Agriculture and Rural Affairs, Key Laboratory of Urban Agriculture, Shanghai, China
| | - Pei Zhou
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.,Ministry of Agriculture and Rural Affairs, Key Laboratory of Urban Agriculture, Shanghai, China
| | - Dan Zhang
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.,Ministry of Agriculture and Rural Affairs, Key Laboratory of Urban Agriculture, Shanghai, China
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20
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Zhu Y, Li H, Wu Y, Yin XA, Zhang G. Effects of surface-modified biochars and activated carbon on the transformation of soil inorganic nitrogen and growth of maize under chromium stress. CHEMOSPHERE 2019; 227:124-132. [PMID: 30986594 DOI: 10.1016/j.chemosphere.2019.04.042] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2018] [Revised: 02/25/2019] [Accepted: 04/06/2019] [Indexed: 05/03/2023]
Abstract
Elevated chromium (Cr) level is challenging agricultural production and affecting soil biochemical process. This study evaluated the effect of amendments including surface-modified biochars (HBC: acid washing, Fe(III)-HBC: ferric iron loading, nZVI-HBC: nanoscale zero-valent iron loading) and activated carbon on hexavalent chromium (Cr(VI)) removal in soil and on N cycling enzyme activities, transformation of soil inorganic nitrogen, and growth of maize under Cr stress. The results showed that amendments increased Cr(VI) removal by 72.9%-96.34% at three levels of spiked Cr(VI) (low: 125 mg kg-1, moderate: 250 mg kg-1, high: 500 mg kg-1). Under low Cr stress, amendments generally significantly decreased urease and nitrite reductase activities but increased nitrate reductase activity (p < 0.05). The NH4+-N content had a significant positive correlation with urease activity (p < 0.01), while both NO2--N and NO3--N were absent correlations with N cycling enzyme studied. Amendments decreased NH4+-N/NO3--N ratio under low Cr stress but increased it under moderate Cr stress, although the difference was not significant. Under high Cr stress, only Fe(III)-HBC significantly increased NH4+-N/NO3--N ratio (p < 0.05). The decrease and increase of NH4+-N/NO3--N ratios indicate the enhancement of nitrification and denitrification, respectively. The increase in Cr(VI) removal by amendments contributed to the increase in the migration of NO3--N from roots to shoots. Amendments (except for nZVI-HBC in soil under low Cr stress) increased maize height by 20%-59%. Under low Cr stress, however, nZVI-HBC significantly decreased maize height by 65% (p < 0.05), indicating the toxic effect of nZVI on maize growth overwhelmed low Cr stress.
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Affiliation(s)
- Yuen Zhu
- School of Environment and Resources, Shanxi University, Taiyuan, 030006, China
| | - Hua Li
- School of Environment and Resources, Shanxi University, Taiyuan, 030006, China
| | - Yi Wu
- School of Environment and Resources, Shanxi University, Taiyuan, 030006, China
| | - Xin-An Yin
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, 100875, China
| | - Guixiang Zhang
- College of Environment and Safety, Taiyuan University of Science and Technology, Taiyuan, 030024, China.
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21
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Chu S, Zhang D, Zhi Y, Wang B, Chi CP, Zhang D, Liu Y, Zhou P. Enhanced removal of nitrate in the maize rhizosphere by plant growth-promoting Bacillus megaterium NCT-2, and its colonization pattern in response to nitrate. CHEMOSPHERE 2018; 208:316-324. [PMID: 29883866 DOI: 10.1016/j.chemosphere.2018.05.189] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2018] [Revised: 05/14/2018] [Accepted: 05/30/2018] [Indexed: 06/08/2023]
Abstract
High soil nitrate concentrations can lead to the secondary salinization of soils. Bacillus megaterium NCT-2 is a wild-type strain isolated from secondary salinized soil and is very effective in reducing nitrate. Laboratory and greenhouse experiments were carried out to investigate its nitrate reduction capabilities, colonization pattern, and plant growth promotion responses to nitrate content in the soil. B. megaterium NCT-2 was marked with a green fluorescent protein (gfp) gene and was left to successfully colonize maize roots and the rhizosphere. Inoculation with gfp-tagged NCT-2 significantly promoted nitrate removal from the soil and improved plant growth. Confocal microscopy results revealed that NCT-2 is an endophyte that can colonize the meristematic and elongation zones of the root tip, and the middle segment of the root. Soil nitrate concentration had no significant effect on NCT-2 distribution. The gfp-tagged NCT-2 populations in the roots and rhizosphere soil first increased, but then decreased, and at the end of the experiment, colonization levels in the rhizosphere soil stabilized at ∼5 × 104 CFU g-1 soil. However, the levels in the roots increased again to 1-3 × 104 CFU g-1 root in the different treatments. The NCT-2 population in the roots was significantly affected by nitrate content. A nitrate-nitrogen concentration of 72 mg kg-1 was the optimum concentration for NCT-2 colonization of maize roots. This study will improve the agricultural application of NCT-2 as a biofertilizer for nitrate removal and plant growth promotion.
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Affiliation(s)
- Shaohua Chu
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China; Key Laboratory of Urban Agriculture, Ministry of Agriculture, Shanghai, China; Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, China
| | - Dan Zhang
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China; Key Laboratory of Urban Agriculture, Ministry of Agriculture, Shanghai, China; Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, China.
| | - Yuee Zhi
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China; Key Laboratory of Urban Agriculture, Ministry of Agriculture, Shanghai, China; Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, China
| | - Bin Wang
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China; Key Laboratory of Urban Agriculture, Ministry of Agriculture, Shanghai, China; Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, China
| | - Chin-Ping Chi
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China; Key Laboratory of Urban Agriculture, Ministry of Agriculture, Shanghai, China; Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, China
| | - Dongwei Zhang
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China; Key Laboratory of Urban Agriculture, Ministry of Agriculture, Shanghai, China; Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, China
| | - Yang Liu
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China; Key Laboratory of Urban Agriculture, Ministry of Agriculture, Shanghai, China; Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, China
| | - Pei Zhou
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China; Key Laboratory of Urban Agriculture, Ministry of Agriculture, Shanghai, China; Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, China.
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22
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Four Molybdenum-Dependent Steroid C-25 Hydroxylases: Heterologous Overproduction, Role in Steroid Degradation, and Application for 25-Hydroxyvitamin D 3 Synthesis. mBio 2018; 9:mBio.00694-18. [PMID: 29921665 PMCID: PMC6016249 DOI: 10.1128/mbio.00694-18] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Side chain-containing steroids are ubiquitous constituents of biological membranes that are persistent to biodegradation. Aerobic, steroid-degrading bacteria employ oxygenases for isoprenoid side chain and tetracyclic steran ring cleavage. In contrast, a Mo-containing steroid C-25 dehydrogenase (S25DH) of the dimethyl sulfoxide (DMSO) reductase family catalyzes the oxygen-independent hydroxylation of tertiary C-25 in the anaerobic, cholesterol-degrading bacterium Sterolibacterium denitrificans Its genome contains eight paralogous genes encoding active site α-subunits of putative S25DH-like proteins. The difficult enrichment of labile, oxygen-sensitive S25DH from the wild-type bacteria and the inability of its active heterologous production have largely hampered the study of S25DH-like gene products. Here we established a heterologous expression platform for the three structural genes of S25DH subunits together with an essential chaperone in the denitrifying betaproteobacterium Thauera aromatica K172. Using this system, S25DH1 and three isoenzymes (S25DH2, S25DH3, and S25DH4) were overproduced in a soluble, active form allowing a straightforward purification of nontagged αβγ complexes. All S25DHs contained molybdenum, four [4Fe-4S] clusters, one [3Fe-4S] cluster, and heme B and catalyzed the specific, water-dependent C-25 hydroxylations of various 4-en-3-one forms of phytosterols and zoosterols. Crude extracts from T. aromatica expressing genes encoding S25DH1 catalyzed the hydroxylation of vitamin D3 (VD3) to the clinically relevant 25-OH-VD3 with >95% yield at a rate 6.5-fold higher than that of wild-type bacterial extracts; the specific activity of recombinant S25DH1 was twofold higher than that of wild-type enzyme. These results demonstrate the potential application of the established expression platform for 25-OH-VD3 synthesis and pave the way for the characterization of previously genetically inaccessible S25DH-like Mo enzymes of the DMSO reductase family.IMPORTANCE Steroids are ubiquitous bioactive compounds, some of which are considered an emerging class of micropollutants. Their degradation by microorganisms is the major process of steroid elimination from the environment. While oxygenase-dependent steroid degradation in aerobes has been studied for more than 40 years, initial insights into the anoxic steroid degradation have only recently been obtained. Molybdenum-dependent steroid C25 dehydrogenases (S25DHs) have been proposed to catalyze oxygen-independent side chain hydroxylations of globally abundant zoo-, phyto-, and mycosterols; however, so far, their lability has allowed only the initial characterization of a single S25DH. Here we report on a heterologous gene expression platform that allowed for easy isolation and characterization of four highly active S25DH isoenzymes. The results obtained demonstrate the key role of S25DHs during anoxic degradation of various steroids. Moreover, the platform is valuable for the efficient enzymatic hydroxylation of vitamin D3 to its clinically relevant C-25-OH form.
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Mahdavianpour M, Moussavi G, Farrokhi M. Biodegradation and COD removal of p -Cresol in a denitrification baffled reactor: Performance evaluation and microbial community. Process Biochem 2018. [DOI: 10.1016/j.procbio.2018.03.016] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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24
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Effects of microbial diversity on nitrite concentration in pao cai , a naturally fermented cabbage product from China. Food Microbiol 2018; 72:185-192. [DOI: 10.1016/j.fm.2017.12.003] [Citation(s) in RCA: 46] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2017] [Revised: 11/28/2017] [Accepted: 12/06/2017] [Indexed: 11/21/2022]
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