Coastal urbanization leads to remarkable seaweed species loss and community shifts along the SW Atlantic

A novel seaweed detection image processing and validation framework: A pragmatic study on natural seaweed beds along North-West Coast of India

Seaweeds play a pivotal role in global ecology contributing significantly to biodiversity conservation and coastal habitat of marine ecosystems. In particular, natural seaweed beds are increasingly vulnerable to climate change and commercial exploitation, necessitate the effective monitoring, especially given the extensive coastlines. Thus, this study presents a novel framework that integrates remote sensing, image processing techniques, and on-site validation methods to standardize indices for seaweed cover changes and abundance detection across three selected natural coastal seaweed beds along the biodiversity-rich North-West Coast of India. We introduce a novel in-situ validation method to assess seaweed abundance while standardizing three remote sensing indices i.e. the Normalized Difference Vegetation Index (NDVI), the Floating Algae Index (FAI), and the Seaweed Enhancing Index (SEI). By correlating ground-truth measurements of seaweed biomass with values derived from remote sensing indices, we enable detailed estimations of both presence and abundance. Our findings reveal that the natural seaweed beds along the Veraval coast exhibit the highest levels of vegetation cover, followed by other selected sites at Kelwa and Porbandar, with robust correlations observed across all indices. Notably, the SEI demonstrated superior accuracy in identifying seaweed habitats compared to NDVI and FAI. Ground-truth validation substantiates the reliability of our results, signifying positive correlations between the index outputs and actual seaweed abundance. Also, this study establishes a robust framework for future research by introducing indices standardization methodologies for remote sensing and image processing of seaweed habitats. By demonstrating the efficacy of in-situ validation and grid-based assessments, we have effectively quantified seaweed density and distribution. Furthermore, the integration of advanced remote sensing data from Landsat-8 not only facilitates long-term monitoring but also provides a valuable baseline for spatio-temporal analyses of seaweed habitat dynamics.

Checklist of marine macroalgae in two contiguous Marine Protected Areas in the south-western Atlantic

Background

The Costa das Algas Environmental Protection Area (EPA) and the Santa Cruz Wildlife Refuge (WR), located in the Espírito Santo Continental Shelf, Brazil, are outstanding marine protected areas due to their high biodiversity, particularly of macroalgae. Together, these two relatively small protected areas (1,150 and 177 km2, respectively) harbour about a quarter of all macroalgal species recorded in Brazil.The checklist presented herein updates the algal flora of these two protected areas with data obtained until 2019. Two hundred and sixty-five macroalgal taxa were recorded, most of which with vouchers. Checklists based on the collections of each protected area were published on: "Catálogo de Plantas das Unidades de Conservação do Brasil" (https://catalogo-ucs-brasil.jbrj.gov.br/).

New information

Besides specimens collected between 2018 and 2019, the algal flora presented herein includes previous records from different Brazilian herbaria (e.g., SP, SPF, ALCB). Herbaria records may include species that do not occur in intertidal reefs (e.g., Laminaria). Overall, 249 macroalgal taxa and one marine angiosperm were recorded in the Costa das Algas EPA (87 new records) and 136 macroalgal taxa and one marine angiosperm in the Santa Cruz WR (46 new records). All taxa are native to Brazil and nine are endemic to Brazil. Our results provide a taxonomic foundation to support management, long-term monitoring and conservation in these protected areas.

Comparative nutrient drawdown capacities of farmed kelps and implications of metabolic strategy and nutrient source

Seaweed aquaculture, particularly kelp farming, is a popular topic as a potential solution for mitigating anthropogenic pollutants and enhancing coastal drawdown of carbon and nitrogen. Using a common garden approach, this study evaluated nutrient drawdown capacities of Alaria marginata (ribbon kelp) and Saccharina latissima (sugar kelp) across four commercial kelp farms in Southeast and Southcentral Alaska. Our findings show that A. marginata exhibited ~30% more carbon and 21% more nitrogen content compared to S. latissima. These results demonstrate the potential for A. marginata to serve as a more efficient species for nutrient drawdown into farmed kelp tissues (per unit biomass) for consideration of potential mitigative actions. The efficacy of this drawdown is likely to be driven by the careful pairing of kelp species with farming environment. Temporally, there was a noted increase in carbon content and a decline in nitrogen content from March to May for both species, consistent with known seasonal nutrient dynamics in coastal waters. Notably, differences in the carbon stable isotope signatures (δ13C) between the kelps may hint at variations in metabolic pathways and nutrient sourcing, particularly concerning the preferential assimilation of CO2 versusHCO 3 - , and highlight the need for further work on this topic for applied macroalgal research.

The Tree of Life eDNA metabarcoding reveals a similar taxonomic richness but dissimilar evolutionary lineages between seaports and marine reserves

Coastal areas host a major part of marine biodiversity but are seriously threatened by ever-increasing human pressures. Transforming natural coastlines into urban seascapes through habitat artificialization may result in loss of biodiversity and key ecosystem functions. Yet, the extent to which seaports differ from nearby natural habitats and marine reserves across the whole Tree of Life is still unknown. This study aimed to assess the level of α and β-diversity between seaports and reserves, and whether these biodiversity patterns are conserved across taxa and evolutionary lineages. For that, we used environmental DNA (eDNA) metabarcoding to survey six seaports on the French Mediterranean coast and four strictly no-take marine reserves nearby. By targeting four different groups-prokaryotes, eukaryotes, metazoans and fish-with appropriate markers, we provide a holistic view of biodiversity on contrasted habitats. In the absence of comprehensive reference databases, we used bioinformatic pipelines to gather similar sequences into molecular operational taxonomic units (MOTUs). In contrast to our expectations, we obtained no difference in MOTU richness (α-diversity) between habitats except for prokaryotes and threatened fishes with higher diversity in reserves than in seaports. However, we observed a marked dissimilarity (β-diversity) between seaports and reserves for all taxa. Surprisingly, this biodiversity signature of seaports was preserved across the Tree of Life, up to the order. This result reveals that seaports and nearby marine reserves share few taxa and evolutionary lineages along urbanized coasts and suggests major differences in terms of ecosystem functioning between both habitats.

Effects of ocean warming and pollution on Sargassum forests

The combined effects of climate change and ocean pollution have resulted in a noteworthy decline of canopy-forming species, impacting marine biodiversity and ecosystem functioning significantly. In this context, Sargassum cymosum, which is widely distributed along the southwestern Atlantic Ocean, serves as an excellent model among canopy-forming species to investigate these impacts on populations in different regions and environmental conditions. Here, we evaluate the ecophysiological responses of two populations of S. cymosum, from Florianopolis (warm-temperate province; WTP) and Fernando de Noronha (tropical province, TP), through of interaction of temperatures and nutrient concentrations, representing marine heatwaves and acute pollution levels. Our findings revealed a decrease in biomass in both populations, highlighting the significance of nutrient enrichment as an anthropogenic filter that might potentially inhibit the expansion of the populations from tropical regions and temperature for WTP ones. These stressors directly impacted the physiological performance of S. cymosum populations, including relative growth rates, photosynthesis, chlorophylls, carotenoids and phenolic compound levels. Although there was an increase in both parameters for the TP population, a significant loss of biomass was observed, with growth rates reaching -1.5% per day. Our results highlight the need for urgent actions to manage the eutrophication process due to its negative association with global warming, which can enhance the impacts and preclude the settlement and survival of Sargassum in warm-temperate areas considering the observed and predicted tropicalization process.

Macroecology of rocky intertidal benthic communities along the southwestern Atlantic: Patterns of spatial variation and associations with natural and anthropogenic variables

Assessing spatial variability in biodiversity and its relationships with potential drivers is necessary for understanding and predicting changes in ecosystems. Here, we evaluated spatial patterns in sessile macrobenthic communities in rocky intertidal habitats along the southwestern Atlantic (SE Brazil), spanning over 500 km of coastline. We applied a rapid-survey approach focusing on the main space occupiers and habitat-forming taxa. We partitioned community variance into spatial scales ranging from metres to hundreds of kilometres and assessed whether community patterns were associated with variation in shore topography, nearshore ocean, and human influence. The communities from the mid-midlittoral level exhibited equivalent variation (31-35%) at the scales of quadrats (metres), sites (kilometres), and sub-regions (tens of kilometres). For the communities from the low-midlittoral and infralittoral fringe levels, most variability occurred at the scales of quadrats and sites (30-42%), followed by sub-regions (22%). Wave fetch, sea surface temperature (SST), and shore inclination were the variables that best explained community structure at the mid-midlittoral. At the low-midlittoral and infralittoral fringe, the most influential variables were related to oceanic forcing (SST, total suspended solids, particulate organic carbon, chlorophyll-a concentration) and human influence. Univariate analyses also revealed strong associations between the abundance of the main components of the communities and the predictor variables evaluated. Our results suggest that urbanised estuarine bays and coastal upwelling regimes have a strong influence on adjacent benthic communities, driving macroecological patterns in the study area. This study advances the knowledge in macroecology and biogeography of rocky shores in an understudied coastline and globally and provides valuable insights for future assessments of ecological changes resulting from unfolding human impacts.

A dataset of cold-water coral distribution records

Species distribution data are key for monitoring present and future biodiversity patterns and informing conservation and management strategies. Large biodiversity information facilities often contain spatial and taxonomic errors that reduce the quality of the provided data. Moreover, datasets are frequently shared in varying formats, inhibiting proper integration and interoperability. Here, we provide a quality-controlled dataset of the diversity and distribution of cold-water corals, which provide key ecosystem services and are considered vulnerable to human activities and climate change effects. We use the common term cold-water corals to refer to species of the orders Alcyonacea, Antipatharia, Pennatulacea, Scleractinia, Zoantharia of the subphylum Anthozoa, and order Anthoathecata of the class Hydrozoa. Distribution records were collated from multiple sources, standardized using the Darwin Core Standard, dereplicated, taxonomically corrected and flagged for potential vertical and geographic distribution errors based on peer-reviewed published literature and expert consulting. This resulted in 817,559 quality-controlled records of 1,170 accepted species of cold-water corals, openly available under the FAIR principle of Findability, Accessibility, Interoperability and Reusability of data. The dataset represents the most updated baseline for the global cold-water coral diversity, and it can be used by the broad scientific community to provide insights into biodiversity patterns and their drivers, identify regions of high biodiversity and endemicity, and project potential redistribution under future climate change. It can also be used by managers and stakeholders to guide biodiversity conservation and prioritization actions against biodiversity loss.

Conflict or Coordination? Analysis of Spatio-Temporal Coupling Relationship between Urbanization and Eco-Efficiency: A Case Study of Urban Agglomerations in the Yellow River Basin, China

The coordination and coupling of new urbanization and the ecological environment is of great significance for the high-quality development of the Yellow River basin, China. In this paper, the urbanization efficiency and ecological efficiency of seven urban agglomerations in the Yellow River basin, China, from 2006 to 2019 are calculated at the city level. Spatial correlation analysis between urbanization efficiency and ecological efficiency is carried out by applying the spatial association model. Then, the spatio-temporal coupling relationship is estimated based on the relative development and spatial coupling models. The results show that urbanization efficiency has been rising, from 0.83 in 2006 to 0.91 in 2019. Ecological efficiency first stabilized and then rose from 1.03 in 2006 to 1.23 in 2019. Spatially, cities with high urbanization efficiency development are increasing from west to east. Cities with high eco-efficient developments are increasing from northwest to southeast. The coupling relationship between the two is an N-type relationship, with the trend of first rising, then falling, and then rising. Spatially, the coupling degree of the upper and lower reaches of the Yellow River basin, China, is higher than that of the middle reaches of the Yellow River basin, China. Finally, this paper puts forward policy recommendations on the coordinated and coupling development of urban agglomerations in the Yellow River basin, China, from the perspective of the future differentiated development of different urban agglomerations.

Coastal degradation impacts on green turtle's (Chelonia mydas) diet in southeastern Brazil: Nutritional richness and health

This study evaluated the influence of environmental degradation on the nutritional value of the main marine macrophytes consumed by green sea turtles (Chelonia mydas) in areas with different degrees of urbanization. Macrophyte assemblages in the highly urbanized area (HUa) showed lower richness compared to the lightly urbanized area (LUa) (Mann-Whitney U test: 10.0 ± 3.6 SD genera and 11.9 ± 4.2 taxa per transect vs. 20.1 ± 7.0 genera and 23.5 ± 9.2 taxa per transect) respectively. Also, diet was poorer with 4.0 ± 1.6 genera per turtle (vs. 8.5 ± 4.0 in HUa) and less diverse with Shannon index of diversity = 0.45 ± 0.29 (vs. 0.64 ± 0.46 in LUa). Body condition was similar in both areas. About half of individuals were classified as having normal body condition, 14-15% as underweight and 23-34% as being emaciated. Fibropapillomatosis prevalence (χ² = 8.720; n = 222; df = 1; p = 0.003) was higher in the HUa but, in affected animals, severity was marginally non-significant (χ² = 5.721; n = 82; df = 2; p = 0.057). Significant differences in energy content (kcal) were detected between areas in both summer (S) and winter (W). All ANOVAs on total lipids (F = 22.15 [S] and 30.39 [W]), total water-soluble proteins (F = 327.65 [S] and 64.42 [W]) and total carbohydrates (F = 70.90 [S] and 27.62 [W]) showed high significance (p < 0.001). Carotenoids concentration yielded significant results for Halodule in summer and Hypnea in winter (ANOVAs, F = 39.42 and 13.07, respectively). For both, tests revealed that concentration was higher in LUa than HUa. High levels of phycobiliproteins and proteins in this area probably reflect nitrogen accumulation. Frequency and severity of fibropapillomatosis suggest that urbanization-caused alterations in species diversity and in chemical composition of marine plants affect green turtles' health. LIGHT ABSTRACT: The use of coastal areas by humanity is widespread and increasing. The impacts caused to the coastal environment, be it terrestrial, estuarine or marine, are important and affect numerous species. Our study evaluated the influence of environmental degradation on the nutritional value of the main algae eaten by the green turtle, one of the very few marine megaherbivores (those herbivores with body mass above 10 kg). Diet in the highly urbanized area was richer in proteins, lipids and carbohydrates (sugars) and lower in carotenoids (photosynthetic and photoprotectant pigments in algae and plants; precursors of vitamin A involved in oxygen transport in animals-animals do not synthetize such molecules). High levels in phycobiliproteins (photosynthetic pigments present in some algae) and proteins in the highly urbanized area probably result from organic pollution and nitrogen accumulation in coastal waters. Nitrogen compounds dissolved in water are a threat to vertebrates due to its toxicity and negative effects on the immune system. Our results suggest that algae chemical composition and severity of fibropapillomatosis (tumors caused by a herpesvirus in green sea turtles) are directly related through environmental alterations caused by urbanization.

Spatial Correlation and Influencing Factors of Environmental Regulation Intensity in China

In this study, we examined the spatial difference of environmental regulation intensity in 30 provinces (autonomous regions and municipalities directly under the central government) of China. It was found that there were significant differences in environmental regulation intensity in the four regions, with a decreasing trend of “west–central–northeast–east” on the whole. Applying the Theil index showed that intra-regional differences accounted for more than 85% of the overall differences in environmental regulation intensity. Goble Moran’s I index was used to verify the spatial correlation of China’s environmental regulation. It was found that the p-value of Goble Moran’s I index was less than 10% in 7 years from 2010 to 2019. It was verified that the environmental regulation intensity in China has had a spatial correlation. In addition, a positive spatial correlation between the environmental regulation intensity in each province was found, indicating that an increase in the environmental regulation intensity of one province will lead to an increase in the intensity of environmental regulation in neighboring provinces. Finally, through the construction of a spatial Markov model to test the spillover effect of environmental regulation intensity in China, it was found that the local environmental regulation intensity will change to different degrees when there are spatial differences in the intensity of environmental regulation in neighboring provinces. This research will be helpful for provincial governments to formulate appropriate environmental regulation targets based on regional characteristics, which is of great significance for China’s and other countries’ green economic development and other countries to solve the contradiction between environmental pollution and economic development.

Urbanization influences small mammal composition, but not species richness in forest fragments in Accra, Ghana

The Accra Plain of Ghana is experiencing rapid urbanization, but there is scant information on its impact on local biodiversity. We assessed the changes in land use/land cover of the Accra Plain since 1991 and evaluated how the observed changes have influenced local small mammals in forest fragments. We applied supervised classification and intensity analysis time-series Landsat imagery data to assess land use/land cover changes between 1991 and 2017. Small mammals were surveyed in two forest fragments, the Pinkwae and Adumanya forests from June 2019 to January 2020, using capture-mark-recapture technique. We compared our data with baseline data gathered in 1991-1992, when large areas of the city remained mostly undeveloped. Our data revealed that the urban area has increased by 832%, while the forest area declined by 85% between 1991 and 2017. The Pinkwae and Adumanya forests, which covered 120 and 1.5 ha, respectively, in 1991 have each been reduced to < 1 ha. We found changes in the small mammal species composition in the forest fragments, but not species richness due to species turnover. Grammomys poensis and Dephomys defua are first records for the Accra Plain. Our data suggested that small forest fragments within the urbanizing landscape are important for maintaining the local small mammal species. For the conservation of local small mammals in urbanizing landscapes, it is important to maintain the greatest possible number of small forest fragments and establish policies that prevent forest remnants from being further depleted.

Functional redundancy and stability in a subtidal macroalgal community in the Southwestern Atlantic coast

Functional redundancy can stabilize ecological functions as asynchronous fluctuations among functionally similar species may buffer environmental changes. We investigated the temporal dynamics of a subtidal macroalgal community in the warm temperate Southwestern Atlantic coast (SWA) to evaluate whether functional redundancy stabilize ecosystems functions through compensatory dynamics under realistic environmental scenarios. Despite temporal variations in the community structure occurred, a high stability in macroalgal coverage was found at the community-level driven by taxa asynchronous fluctuations. No relationship between functional redundancy and stability occurred, suggesting that functional compensation cannot surpass the influence of environmental fluctuations on the performance of ecological functions. Declines in Sargassum species abundance, along with its low functional redundancy, indicate that this canopy-forming algae must be prioritized in conservation efforts in the SWA. Our study adds to the comprehension and generalization of biodiversity-stability findings in natural systems across distinct geographical areas, also contributing to their operationalization in marine ecosystems.

Physiology, niche characteristics and extreme events: Current and future habitat suitability of a rhodolith-forming species in the Southwestern Atlantic

Given the ecological and biogeochemical importance of rhodolith beds, it is necessary to investigate how future environmental conditions will affect these organisms. We investigated the impacts of increased nutrient concentrations, acidification, and marine heatwaves on the performance of the rhodolith-forming species Lithothamnion crispatum in a short-term experiment, including the recovery of individuals after stressor removal. Furthermore, we developed an ecological niche model to establish which environmental conditions determine its current distribution along the Brazilian coast and to project responses to future climate scenarios. Although L. crispatum suffered a reduction in photosynthetic performance when exposed to stressors, they returned to pre-experiment values following the return of individuals to control conditions. The model showed that the most important variables in explaining the current distribution of L. crispatum on the Brazilian coast were maximum nitrate and temperature. In future ocean conditions, the model predicted a range expansion of habitat suitability for this species of approximately 58.5% under RCP 8.5. Physiological responses to experimental future environmental conditions corroborated model predictions of the expansion of this species' habitat suitability in the future. This study, therefore, demonstrates the benefits of applying combined approaches to examine potential species responses to climate-change drivers from multiple angles.

Coral community composition and carbonate production in an urbanized seascape

Coastal urbanization causes environmental modifications that directly and indirectly influence the distribution and functioning of coral reefs. However, the capacity of urban infrastructure to support corals and vertically accrete is less understood. Here, we investigated if coral communities on reefs and seawalls in Singapore are distinct, and examined the environmental variables influencing coral carbonate production. Surveys at 22 sites yielded 134 coral species, with richness significantly higher on reefs. Coral cover and Shannon index did not differ between habitat types. Community composition was distinct between habitat types, with seawalls supporting a higher proportion of massive and thick-plating species. 'Distance from mainland' was the single most important variable influencing normalized carbonate production rates (a function of species-specific linear extension rate and skeletal bulk density and site coral cover), which were higher further from the mainland where human activity and development pressures were greater. Our results indicate that environmental filtering strongly shapes coral communities and may influence ecosystem functioning in Singapore's urbanized reef system. The findings will guide the management of reefs on increasingly urbanized coastlines.

Differential effects of nutrient enrichment on carbon metabolism and dissolved organic carbon (DOC) fluxes in macrophytic benthic communities

Nutrient enrichment can alter negatively benthic communities and reduce their ecological services. This study explores in two contrasting seasons (winter and summer), the effects of in situ nutrient enrichment at the community level on carbon metabolism and dissolved organic carbon (DOC) fluxes in two benthic communities dominated by the seagrass Cymodocea nodosa and by the macroalga Caulerpa prolifera. Under nutrient enrichment, C. nodosa increased total community biomass and diversity in summer, while net community production shifted from net autotrophic to net heterotrophic in winter. In contrast, C. prolifera became heterotrophic in summer, while no significant effects were found in winter. Regarding DOC fluxes, nutrient enrichment shifted C. nodosa from net DOC consumer in winter to a strong net DOC producer in summer, while C. prolifera seemed unaffected. Therefore, nutrient enrichment can promote conditional effects (positive, negative or neutral) in coastal areas depending both on macrophyte assemblages and season.

Long-term changes in macroalgae assemblages reveal a gradual biodiversity loss over the last 200 years in the hypereutrophic Guanabara Bay

Guanabara Bay, the second largest bay on the Brazilian coast, has tropical to subtropical, hypereutrophic water conditions. A survey of the macroalgae flora conducted over the past 200 years (1800-2013) yielded a list of 245 species, which represents 15.7% of the total macroalgae recorded in the Tropical Western Atlantic, while comprehends 29.9% and 50.2% of the marine flora in Brazil and Rio de Janeiro, respectively. When evaluating the macroalgal list throughout different periods, it is noticeable the gradual loss of biodiversity as anthropization increased over the last two centuries. The use of phytogeographic indexes and beta diversity confirmed the negative changes in macroalgae assemblages as a response to increasing environmental degradation. The use of floristic surveys to establish the reference conditions employing historical data and/or regionally referenced prove to be an efficient tool using macroalgae as an ecological indicator for water quality.

The end of resilience: Surpassed nitrogen thresholds in coastal waters led to severe seagrass loss after decades of exposure to aquaculture effluents

Although eutrophication is considered a major driver for global seagrass loss with aquaculture effluents being a main factor, little is known about the effect on seagrass meadows in eastern Asia and their resilience to long-term nutrient impact. Seagrass meadows impacted by land-based aquaculture since the 1990s, were visited in 2008/2009 and revisited after another 9 years of effluent exposure. During that period seagrass aboveground biomass declined by 87%. Species diversity decreased with increasing effluent exposure. A δ¹⁵N of 9.0‰ of seagrass leaves and additional biogeochemical and biological indicators identify pond effluents as the driver of the observed eutrophication. When continuously exposed to dissolved inorganic nitrogen (DIN) concentrations exceeding a calculated threshold of 8 μM DIN seagrass meadows will disappear. Chronic nutrient pollution from aquaculture effluents can lead to a reduction of biodiversity and ultimately to a complete loss of seagrasses along the aquaculture-dominated coasts in E and SE Asia.

Human-engineered hydrodynamic regimes as a driver of cryptic microinvertebrate assemblages on urban artificial shorelines

Urban shorelines undergo substantial hydrodynamic changes as a result of coastal engineering and shoreline armouring that can alter sedimentation, turbidity, and other factors. These changes often coincide with major shifts in the composition and distribution of marine biota, however, rarely are hydrodynamic-mediated factors confirmed experimentally as the mechanism underpinning these shifts. This study first characterized hydrodynamic-related distribution patterns among epilithic and epiphytic microinvertebrates on urban seawalls in Singapore. We found reduced microinvertebrate abundances and distinct microinvertebrate community structure within benthic turf algae in areas where coastal defences had reduced wave energy and increased sediment deposition, among other hydrodynamic-related abiotic changes. Low-exposure areas also had reduced densities of macroinvertebrate grazers and less dense turf algae (lower mass per cm²) than adjacent high-exposure areas. Using harpacticoid copepods as a model taxon, we performed a reciprocal transplant experiment to discern between the effects of exposure-related conditions and grazing. Results from the experiment indicate that conditions associated with restricted wave energy from shoreline engineering limit harpacticoid population densities, as transplantation to low-exposure areas led to rapid reductions in abundance. At the same time, we found no effect from grazer exclusion cages, suggesting harpacticoids are minimally impacted by exposure-related gradients in gastropod macrograzer densities over short time scales. Given the key role of intertidal microinvertebrates, particularly harpacticoids, in nearshore food webs, we postulate that human-engineered hydrodynamic regimes are an important factor shaping marine ecosystem functioning in urban areas.

Diversity and turnover in a rocky shore intertidal community of an upwelling region (Arraial do Cabo, Brazil)

The present study describes the community diversity and gives a seasonal distribution of an intertidal macroalgal assemblage at Prainha Beach, Arraial do Cabo City in Rio de Janeiro state, Brazil. Sampling was performed during four seasons of a 1-year period. Organisms were sampled and photographed using photoquadrats to quantify relative coverage. Ninety-six taxa of macroalgae were registered, including 23 chlorophytes, 19 ochrophytes, and 54 rhodophytes, while three barnacles, seven mollusks, one isopod, and one polychaete were recorded among the zoobenthos. In the upper intertidal zone, the coverage was frequently dominated by invertebrates. Macroalgae always dominated the middle and lower zones, covering almost 100 % in both zones. The highest values of species diversity (H'), richness (S), and turnover rates were found during the transition from spring to summer, which coincided with the upwelling period. A comparison with the 1980's flora revealed that the major changes in the macroalgal assemblage were among species belonging to the same genera, unless new additions were provided. The combination of photoquadrats and minimally destructive sampling allowed a detailed description of the composition and structural characteristics of the intertidal zone, a methodology that should be applied to study protected marine areas.

A fine-tuned global distribution dataset of marine forests

Species distribution records are a prerequisite to follow climate-induced range shifts across space and time. However, synthesizing information from various sources such as peer-reviewed literature, herbaria, digital repositories and citizen science initiatives is not only costly and time consuming, but also challenging, as data may contain thematic and taxonomic errors and generally lack standardized formats. We address this gap for important marine ecosystem-structuring species of large brown algae and seagrasses. We gathered distribution records from various sources and provide a fine-tuned dataset with ~2.8 million dereplicated records, taxonomically standardized for 682 species, and considering important physiological and biogeographical traits. Specifically, a flagging system was implemented to signal potentially incorrect records reported on land, in regions with limiting light conditions for photosynthesis, and outside the known distribution of species, as inferred from the most recent published literature. We document the procedure and provide a dataset in tabular format based on Darwin Core Standard (DwC), alongside with a set of functions in R language for data management and visualization.

Decadal losses of canopy-forming algae along the warm temperate coastline of Brazil

The loss of canopy-forming seaweeds from urbanized coasts has intensified in response to warming seas and non-climatic pressures such as population growth and declining water quality. Surprisingly, there has been little information on the extent of historical losses in the South-western Atlantic, which limits our ability to place this large marine ecosystem in a global context. Here, we use meta-analysis to examine long-term (1969-2017) changes to the cover and biomass of Sargassum spp. and structurally simple algal turfs along more than 1,000 kilometres of Brazil's warm temperate coastline. Analysis revealed major declines in canopy cover that were independent of season (i.e., displaying similar trends for both summer and winter) but varied with coastal environmental setting, whereby sheltered bays experienced greater losses than coastal locations. On average, covers of Sargassum spp. declined by 2.6% per year, to show overall losses of 52% since records began (ranging from 20% to 89%). This contrasted with increases in the cover of filamentous turfs (24% over the last 27 years) which are known to proliferate along human-impacted coasts. To test the relative influence of climatic versus non-climatic factors as drivers of this apparent canopy-to-turf shift, we examined how well regional warming trends (decadal changes to sea surface temperature) and local proxies of coastal urbanization (population density, thermal pollution, turbidity and nutrient inputs) were able to predict the changes in seaweed communities. Our results revealed that the most pronounced canopy losses over the past 50 years were at sites exhibiting the greatest degree of coastal warming, the highest population growth and those located in semi-enclosed sheltered bays. These findings contribute knowledge on the drivers of canopy loss in the South-western Atlantic and join with global efforts to understand and mitigate declines of marine keystone species.

Environmental drivers of rhodolith beds and epiphytes community along the South Western Atlantic coast

Environmental conditions shape the occurrence and abundance of habitat-building organisms at global scales. Rhodolith beds structure important hard substrate habitats for a large number of marine benthic organisms. These organisms can benefit local biodiversity levels, but also compete with rhodoliths for essential resources. Therefore, understanding the factors shaping the distribution of rhodoliths and their associated communities along entire distributional ranges is of much relevance for conservational biology, particularly in the scope of future environmental changes. Here we predict suitable habitat areas and identify the main environmental drivers of rhodoliths' variability and of associated epiphytes along a large-scale latitudinal gradient. Occurrence and abundance data were collected throughout the South-western Atlantic coast (SWA) and modelled against high resolution environmental predictors extracted from Bio-Oracle. The main drivers for rhodolith occurrence were light availability and temperature at the bottom of the ocean, while abundance was explained by nitrate, temperature and current velocity. Tropical regions showed the highest abundance of rhodoliths. No latitudinal pattern was detected in the variability of epiphytes abundance. However, significant differences were found between sampled sites regarding the composition of predominant taxa. The predictors influencing such differences were temperature and nitrate. The Tropical region is abundant in species with warm-water affinities, decreasing toward warm temperate region. The expressive occurrence of tropical species not referred before for warm temperate beds indicate a plausible tropicalization event.

Physiological damages of Sargassum cymosum and Hypnea pseudomusciformis exposed to trace metals from mining tailing

The damages of Mariana's mining mud in the physiology of the brown algae Sargassum cymosum and its main epiphytic, the red algae Hypnea pseudomusciformis, were evaluated by controlled essays. Seaweeds were exposed to presence or absence of mud, isolated or in biological association, for 5 and 15 days. Measured parameters were growth rates, biochemical descriptors, and the chemical investigation of concentration and metal profile of the mud dissolved in seawater. Results showed that the highest values for metals were Al > Fe > Mn > Zn in both exposure periods. The mud also affected the growth rate with lethality in both isolated and associative treatments with H. pseudomusciformis after 15 days. According to our redundancy analysis (RDA), the profile and concentration of all metallic elements can induce different physiological responses of the organisms. We were able to observe a higher physiological adaptive ability of S. cymosum against the long-term presence of metals by the synthesis of phenolic compounds, while the deviation of metabolic routes in H. pseudomusciformis can be addressed as the main responsible for its lethality. Moreover, the presence of Hypnea in associative treatments reduces Sargassum's detoxification ability. The present results reinforce the importance of biological interaction studies in a context of physiological resilience against mining mud pollution and mutual influences of species over the individual ability to avoid oxidative stress.

Phytoremediation potential of Ulva ohnoi (Chlorophyta): Influence of temperature and salinity on the uptake efficiency and toxicity of cadmium

Ulva ohnoi is a green macroalga with fast growth and high rates of nitrogen and phosphorus absorption. Recently, this species has been recorded in several places with record green tide formation in some of them. Using molecular tools, we herein report the first occurrence of this species in Brazil and demonstrate its potential for phytoremediation in typical environmental concentrations of Cd (0.625-15 µg L^-1). Similarly, the effects of physicochemical parameters (salinity and temperature) on the toxicity and uptake efficiency of this species were evaluated. Molecular analysis of two sequences (1141 bp) obtained corroborates another 34 sequences for U. ohnoi obtained from GenBank. The addition of Cd in the medium affected photosynthetic parameters and reduced growth rate. U. ohnoi showed resistance to Cd when cultivated at 18 °C, S15 and 18-25 °C, S35, at concentrations between 0.625 and 2.5 μg. L^-1 of Cd; yet, positive growth rate was maintained. Dose-dependent accumulation was observed in all combinations of factors used with a maximum value of 4.20 μg Cd per gram of dry seaweed at 15 μg. L^-1 of Cd at 18 °C and S35. Maximum value of the concentration factor was 81.3 ± 1.1% of Cd added at the concentration of 0.625 μg. L^-1 to S15 and 18 °C. Our results demonstrate the potential of using U. ohnoi in the phytoremediation of Cd in saltwater or brackish water.

Successions of phytobenthos species in a Mediterranean transitional water system: the importance of long term observations

The availability of quantitative long term datasets on the phytobenthic assemblages of the Mar Piccolo of Taranto (southern Italy, Mediterranean Sea), a lagoon like semi-enclosed coastal basin included in the Italian LTER network, enabled careful analysis of changes occurring in the structure of the community over about thirty years. The total number of taxa differed over the years. Thirteen non-indigenous species in total were found, their number varied over the years, reaching its highest value in 2017. The dominant taxa differed over the years. The number of species in each taxonomic division also varied. In addition to the centuries-old exploitation of its biotic resources, mainly molluscs, the basin has been subject for a long time to a range of anthropogenic driving forces linked to urbanisation, shipbuilding, agriculture and military activities, which have caused chemical and biological pollution, eutrophication and habitat destruction. It may therefore be assumed that these changes were closely related to human activities. Indeed, it was observed that the reduction of only one of these forces, i.e. urban sewage discharge, triggered the recovery of phytobenthos. Therefore, it may be assumed that if the anthropogenic pressure on the Mar Piccolo was eased, it could once again become the paradisiacal place it was held to be in ancient times.

Macroalgae as a tool for assessing the ecological status of coral reefs under the Water Framework Directive: A case study on the reef flats of La Réunion (Indian Ocean)

The monitoring of macroalgae is required by the Water Framework Directive (WFD) to achieve good ecological status for coastal waters and specific questions arise for tropical ecosystems belonging to the outermost European regions. To assess the suitability of macroalgae as a biological quality indicator for La Réunion reef flats (France), we performed multivariate analyses linking the abundance and composition of macroalgae to water physico-chemistry. Three hydrological groups of stations were identified according to dissolved inorganic nitrogen (DIN) concentrations and DIN/PO₄ ratios. Some indicator species were found at the N-enriched stations (Bryopsis pennata, Caulerpa lamourouxii, Chaetomoropha vieillardii, Derbesia sp., Blennothrix lyngbyacea, Sphacelaria tribuloides), and others at the non-impacted stations (Anabaena sp1, Blennothrix glutinosa, Codium arabicum, Neomeris vanbosseae). Another key result was the significant increase in red algal cover at the most N-enriched station. Our findings are discussed in the context of the application of the WFD in the outermost French regions.

Urban green area provides refuge for native small mammal biodiversity in a rapidly expanding city in Ghana

Urbanization is a key driver of global biodiversity loss. Although sub-Saharan African countries are experiencing unprecedented urbanization and urban expansion, very little is known about how this impacts tropical biodiversity. Here, we assessed the effects of urban expansion and urban green space on local small mammal species diversity in Accra, Ghana. We surveyed small mammals in the University of Ghana botanical garden, an urban green area (UGA) and adjoining built-up environment (BE) and compared the results with baseline data (BLD) collected when large areas of the current city still remained mostly undeveloped. The methodology involved live-trapping using Sherman collapsible live-traps. Our data showed higher small mammal abundance and diversity in the UGA than BE. Similarity of species composition was higher between UGA and BLD than between BE and BLD. The small mammal species captured in BE (the rodents Mastomys erythroleucus, Rattus rattus, and Arvicanthis rufinus, and the shrew Crocidura olivieri) are known to easily adapt to human-modified landscapes. Our results suggest that urbanization negatively influenced the abundance, diversity, and community composition of small mammals. Efforts should be directed towards the integration of urban green areas into urban land development planning in developing countries in order to conserve local wildlife and ecological services that enhance the quality of urban life.

Screening of seaweeds in the East China Sea as potential bio-monitors of heavy metals

Seaweeds are good bio-monitors of heavy metal pollution and have been included in European coastal monitoring programs. However, data for seaweed species in China are scarce or missing. In this study, we explored the potential of seaweeds as bio-monitor by screening the natural occurring seaweeds in the "Kingdom of seaweed and shellfish" at Dongtou Islands, the East China Sea. Totally, 12 seaweed species were collected from six sites, with richness following the sequence of Rhodophyta > Phaeophyta > Chlorophyta. The concentration of heavy metals (Cu, Cr, Ni, Zn, Pb, Cd, As) in the seaweeds was determined, and the bioaccumulation coefficient was calculated. A combination of four seaweeds, Pachydictyon coriaceum, Gelidium divaricatum, Sargassum thunbergii, and Pterocladiella capillacea, were proposed as bio-monitors due to their high bioaccumulation capabilities of specific heavy metals in the East China Sea and hence hinted the importance of using seaweed community for monitoring of pollution rather than single species. Our results provide first-hand data for the selection of bio-monitor species for heavy metals in the East China Sea and contribute to selection of cosmopolitan bio-monitor communities over geographical large area, which will benefit the establishment of monitoring programs for coastal heavy metal contamination.

Growth, ammonium metabolism, and photosynthetic properties of Ulva australis (Chlorophyta) under decreasing pH and ammonium enrichment

The responses of macroalgae to ocean acidification could be altered by availability of macronutrients, such as ammonium (NH₄⁺). This study determined how the opportunistic macroalga, Ulva australis responded to simultaneous changes in decreasing pH and NH₄⁺ enrichment. This was investigated in a week-long growth experiment across a range of predicted future pHs with ambient and enriched NH₄⁺ treatments followed by measurements of relative growth rates (RGR), NH₄⁺ uptake rates and pools, total chlorophyll, and tissue carbon and nitrogen content. Rapid light curves (RLCs) were used to measure the maximum relative electron transport rate (rETR_max) and maximum quantum yield of photosystem II (PSII) photochemistry (F_v/F_m). Photosynthetic capacity was derived from the RLCs and included the efficiency of light harvesting (α), slope of photoinhibition (β), and the light saturation point (E_k). The results showed that NH₄⁺ enrichment did not modify the effects of pH on RGRs, NH₄⁺ uptake rates and pools, total chlorophyll, rETR_max, α, β, F_v/F_m, tissue C and N, and the C:N ratio. However, E_k was differentially affected by pH under different NH₄⁺ treatments. E_k increased with decreasing pH in the ambient NH₄⁺ treatment, but not in the enriched NH₄⁺ treatment. NH₄⁺ enrichment increased RGRs, NH₄⁺ pools, total chlorophyll, rETR_max, α, β, F_v/F_m, and tissue N, and decreased NH₄⁺ uptake rates and the C:N ratio. Decreased pH increased total chlorophyll content, rETR_max, F_v/F_m, and tissue N content, and decreased the C:N ratio. Therefore, the results indicate that U. australis growth is increased with NH₄⁺ enrichment and not with decreasing pH. While decreasing pH influenced the carbon and nitrogen metabolisms of U. australis, it did not result in changes in growth.

Structure of macroalgal communities on tropical rocky shores inside and outside a marine protected area

The structure of marine macroalgal communities and morpho-functional groups were investigated in a poorly characterized region on the Tropical Southwestern Atlantic coast, Brazil. The survey was conducted at six rocky shores located on the mainland and on coastal islands distributed inside a marine protected area (MPA) and outside the MPA (near a densely populated area). We hypothesized that tropical rocky shores inside the MPA and islands have higher species richness, diversity, and evenness of marine macroalgae. Results confirmed that species richness, diversity and evenness were significantly higher inside the MPA than in rocky shores outside the MPA. Only species richness was higher on islands than on the mainland. The results suggest that human impacts could lead to a competitive advantage and dominance in the articulated calcareous morphotype, resulting in community differences and lower benthic biodiversity in tropical ecosystems near urbanized sites.

Differences in rocky reef habitats related to human disturbances across a latitudinal gradient

This study tested for differences in the composition of intertidal and shallow subtidal rocky reef habitats subjected to a range of human pressures across ∼1000 km of coastline in New South Wales, Australia over 5 years. Percentage covers of habitats were sampled using aerial photography and a large grain size (20 m² intertidal; 800 m² subtidal) in a nested hierarchical design. Results were consistent with anthropogenic impacts on habitat structure only around estuaries with the most heavily urbanised or agriculturally-intense catchments. The most convincing relationships documented here related to environmental variables such as SST, latitude, reef width and proximity to large estuaries irrespective of human disturbance levels. Moreover, there were suggestions that any influences of estuarine waters (be they anthropogenic or natural) on reef assemblages could potentially extend 10s of kilometres from major estuaries. In general, our results supported those of studies that utilised smaller grain sizes (greatest variability often at smallest spatial scales), but we found that variability over scales of 100s of km can be similar to or greater than variability over scales of 10s of metres.

The brown seaweed Sargassum cymosum: changes in metabolism and cellular organization after long-term exposure to cadmium

Sargassum cymosum was exposed to cadmium (Cd) to determine any physiological and ultrastructural effects. To accomplish this, S. cymosum samples were cultivated under photosynthetic active radiation (PAR) and Cd (0, 0.1, 0.2, 0.4 and 0.8 mg L-1) during 7 and 14 days in laboratory-controlled conditions (0 mg L-1 Cd at both exposure times as control). Seaweeds had high retention capacity (over 90 %) for both exposure times. Growth rates showed significant increases by 14 days, especially for 0.1 and 0.4 mg L-1 Cd. Photosynthetic parameters were unaffected by Cd treatments. Chlorophyll contents were present in higher concentrations for all Cd treatments compared to respective control. Carotenoid profile showed significant differences in total composition and proportion of fucoxanthin and β-carotene, and no lutein was detected at 14 days. Phenolic and flavonoid compounds showed major accumulation at 14 days. Transmission electron microscopy (TEM) analyses presented major alterations in Cd-treated samples, when compared with respective control, in particular disorganization of cell wall fibrils. When compared to respective control samples, multivariate analyses showed disparate and complex interactions among metabolites in Cd-exposed seaweeds, giving evidence of physiological defence response. Thus, it can be concluded that Cd is a stressor for S. cymosum, resulting in physiological and structural alterations related to defence mechanisms against oxidative stress and toxicological effects resulting from long-term metal exposure. However, in the present paper, some observed changes also appear to result from acclimation mechanisms under lower concentration of Cd relative to the tolerance of S. cymosum to experimental conditions.

Increased anthropogenic pressure decreases species richness in tropical intertidal reefs

Multiple human stressors affect tropical intertidal sandstone reefs, but little is known about their biodiversity and the environmental impacts of these stressors. In the present study, multiple anthropogenic pressures were integrated using the relative environmental pressure index (REPI) and related to benthic community structure across an intertidal gradient in five sandstone reefs in the tropical South Atlantic coast. Greater species richness and diversity were noted in the low intertidal zones. There was a negative relationship between REPI and species richness, suggesting that increasing anthropogenic pressure has decreased benthic richness. The factors associated with the loss of richness were jetties built to control erosion, urban areas, beachfront kiosks and restaurants, fish markets, and storm sewers with illegal sewage connections. Our results highlight the need for better infrastructure planning and rigorous monitoring of coastal urban areas, since the large influence of multiple human pressures in these reefs leads to biodiversity losses.

Effects of copper and lead exposure on the ecophysiology of the brown seaweed Sargassum cymosum

The effects of the heavy metals copper (Cu) and lead (Pb) on Sargassum cymosum were evaluated by determining uptake capacity, growth rates, photosynthetic efficiency, contents of photosynthetic pigments and phenolic compounds, 2,2-diphenyl-1-picrylhydrazyl radical-scavenging capacity, and morphological and cellular changes. S. cymosum was cultivated with Cu and Pb separately and combined at concentrations of 10, 25, and 50 μM for 7 days in laboratory-controlled conditions. Seaweeds under Cu treatment showed the highest biosorption capacity, and growth rates were significantly reduced compared to the control. The photosynthesis/irradiance curves showed alterations in kinetic patterns in the metal-treated samples. Specifically, Cu treatment alone inhibited electron transport rate (ETR) response, while Pb alone induced it. However, samples treated with both Cu and Pb (Cu + Pb) showed inhibition in ETR. The total amount of pigments increased relative to control. Light microscopy showed an increase in phenolic compounds, with physodes migrating towards cortical cells. Scanning electronic microscopy revealed alterations in the typical rough surface of thallus, when compared with control, especially for Pb treatments. Based on these results, it could be concluded that Cu and Pb are stress factors for S. cymosum, promoting alterations in seaweed metabolism and stimulating protective mechanisms against oxidative stress. However, the high bioaccumulation capacity of both heavy metals indicates a possible application for S. cymosum as a biosorbent agent for contaminated wastewater when metals are in low concentrations.

Effects of eutrophic seawater and temperature on the physiology and morphology of Hypnea musciformis J. V. Lamouroux (Gigartinales, Rhodophyta)

As both food and source of a kappa-carrageenan, Hypnea musciformis represents a species of great economic interest. It also synthesizes substances with antiviral, anti-helminthic and anti-inflammatory potential and shows promise for use as a bioindicator of cadmium. In this study, we investigated the combined effects of seawater from three urbanized areas (area 1: natural runoff, NRA; area 2: urbanized runoff and sewage with treatment, RTA; area 3: urbanized runoff and untreated sewage, RUS) and three different temperatures (15, 25 and 30 °C) on the growth rate, photosynthetic efficiency, photosynthetic pigments and cell morphology of H. musciformis. After 4 days (96 h) of culture, the biomass of H. musciformis showed differences that fluctuated among the areas and temperature treatments. Specifically, the specimens cultivated in 35 °C had low values of ETRmax, α(ETR), β(ETR), and Fv/Fm photosynthetic parameters, as well as changes in cell morphology, with reduction in photosynthetic pigments and drastic reduction in growth rates. When combined with the extreme temperatures, high concentrations of ammonium ion in seawater effluent caused an inhibition of photosynthetic activity, as well as significant variation in chlorophyll a and carotenoid contents. As observed by light microscopy, the synergism between different temperatures and pollutants found in eutrophic waters caused changes in cellular morphology with increased cell wall thickening and decreased floridean starch grains. H. musciformis also showed important changes in physiological response to each factor independently, as well as changes resulting from the synergistic interaction of these factors combined. Therefore, we can conclude that extreme temperature combined with the effect of eutrophic waters, especially RUS, caused distinct morphological and physiological changes in the red alga H. musciformis.

The effect of cadmium under different salinity conditions on the cellular architecture and metabolism in the red alga Pterocladiella capillacea (Rhodophyta, Gelidiales)

The in vitro effect of cadmium (Cd) on apical segments of Pterocladiella capillacea was examined. Over a period of 7 days, the segments were cultivated with the combination of different salinities (25, 35, and 45 practical salinity units) and Cd concentrations, ranging from 0.17 to 0.70 ppm. The effects of Cd on growth rates and content of photosynthetic pigments were analyzed. In addition, metabolic profiling was performed, and samples were processed for microscopy. Serious damage to physiological performance and ultrastructure was observed under different combinations of Cd concentrations and salinity values. Elementary infrared spectroscopy revealed toxic effects registered on growth rate, photosynthetic pigments, chloroplast, and mitochondria organization, as well as changes in lipids and carbohydrates. These alterations in physiology and ultrastructure were, however, coupled to activation of such defense mechanisms as cell wall thickness, reduction of photosynthetic harvesting complex, and flavonoid. In conclusion, P. capillacea is especially sensitive to Cd stress when intermediate concentrations of this pollutant are associated with low salinity values. Such conditions resulted in metabolic compromise, reduction of primary productivity, i.e., photosynthesis, and carbohydrate accumulation in the form of starch granules. Taken together, these findings improve our understanding of the potential impact of this metal in the natural environment.

Seasonality affects macroalgal community response to increases in pCO2

Ocean acidification is expected to alter marine systems, but there is uncertainty about its effects due to the logistical difficulties of testing its large-scale and long-term effects. Responses of biological communities to increases in carbon dioxide can be assessed at CO₂ seeps that cause chronic exposure to lower seawater pH over localised areas of seabed. Shifts in macroalgal communities have been described at temperate and tropical pCO₂ seeps, but temporal and spatial replication of these observations is needed to strengthen confidence our predictions, especially because very few studies have been replicated between seasons. Here we describe the seawater chemistry and seasonal variability of macroalgal communities at CO₂ seeps off Methana (Aegean Sea). Monitoring from 2011 to 2013 showed that seawater pH decreased to levels predicted for the end of this century at the seep site with no confounding gradients in Total Alkalinity, salinity, temperature or wave exposure. Most nutrient levels were similar along the pH gradient; silicate increased significantly with decreasing pH, but it was not limiting for algal growth at all sites. Metal concentrations in seaweed tissues varied between sites but did not consistently increase with pCO₂. Our data on the flora are consistent with results from laboratory experiments and observations at Mediterranean CO₂ seep sites in that benthic communities decreased in calcifying algal cover and increased in brown algal cover with increasing pCO₂. This differs from the typical macroalgal community response to stress, which is a decrease in perennial brown algae and proliferation of opportunistic green algae. Cystoseira corniculata was more abundant in autumn and Sargassum vulgare in spring, whereas the articulated coralline alga Jania rubens was more abundant at reference sites in autumn. Diversity decreased with increasing CO₂ regardless of season. Our results show that benthic community responses to ocean acidification are strongly affected by season.