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Roy R, Samanta S, Pandit S, Naaz T, Banerjee S, Rawat JM, Chaubey KK, Saha RP. An Overview of Bacteria-Mediated Heavy Metal Bioremediation Strategies. Appl Biochem Biotechnol 2024; 196:1712-1751. [PMID: 37410353 DOI: 10.1007/s12010-023-04614-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/19/2023] [Indexed: 07/07/2023]
Abstract
Contamination-free groundwater is considered a good source of potable water. Even in the twenty-first century, over 90 percent of the population is reliant on groundwater resources for their lives. Groundwater influences the economical state, industrial development, ecological system, and agricultural and global health conditions worldwide. However, different natural and artificial processes are gradually polluting groundwater and drinking water systems throughout the world. Toxic metalloids are one of the major sources that pollute the water system. In this review work, we have collected and analyzed information on metal-resistant bacteria along with their genetic information and remediation mechanisms of twenty different metal ions [arsenic (As), mercury (Hg), lead (Pb), chromium (Cr), iron (Fe), copper (Cu), cadmium (Cd), palladium (Pd), zinc (Zn), cobalt (Co), antimony (Sb), gold (Au), silver (Ag), platinum (Pt), selenium (Se), manganese (Mn), molybdenum (Mo), nickel (Ni), tungsten (W), and uranium (U)]. We have surveyed the scientific information available on bacteria-mediated bioremediation of various metals and presented the data with responsible genes and proteins that contribute to bioremediation, bioaccumulation, and biosorption mechanisms. Knowledge of the genes responsible and self-defense mechanisms of diverse metal-resistance bacteria would help us to engineer processes involving multi-metal-resistant bacteria that may reduce metal toxicity in the environment.
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Affiliation(s)
- Rima Roy
- Department of Biotechnology, School of Life Science & Biotechnology, Adamas University, Kolkata, 700126, India.
| | - Saikat Samanta
- Department of Biotechnology, School of Life Science & Biotechnology, Adamas University, Kolkata, 700126, India
| | - Soumya Pandit
- Department of Life Sciences, School of Basic Sciences and Research, Sharda University, Greater Noida, 201306, India
| | - Tahseena Naaz
- Department of Life Sciences, School of Basic Sciences and Research, Sharda University, Greater Noida, 201306, India
| | - Srijoni Banerjee
- Department of Biotechnology, School of Life Science & Biotechnology, Adamas University, Kolkata, 700126, India
| | - Janhvi Mishra Rawat
- Department of Life Sciences, Graphic Era Deemed to Be University, Dehradun, 248002, Uttarakhand, India
| | - Kundan Kumar Chaubey
- Division of Research and Innovation, School of Applied and Life Sciences, Uttaranchal University, Dehradun, Uttarakhand, 248007, India
| | - Rudra P Saha
- Department of Biotechnology, School of Life Science & Biotechnology, Adamas University, Kolkata, 700126, India.
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2
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Voegtlin SP, Barnes RJ, Hubert CRJ, Larter SR, Bryant SL. Formation of biologically influenced palladium microstructures by Desulfovibrio desulfuricans and Desulfovibrio ferrophilus IS5. N Biotechnol 2022; 72:128-138. [PMID: 36396027 DOI: 10.1016/j.nbt.2022.11.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2022] [Revised: 11/04/2022] [Accepted: 11/05/2022] [Indexed: 11/16/2022]
Abstract
A range of Desulfovibrio spp. can reduce metal ions to form metallic nanoparticles that remain attached to their surfaces. The bioreduction of palladium (Pd) has been given considerable attention due to its extensive use in areas of catalysis and electronics and other technological domains. In this study we report, for the first time, evidence for Pd(II) reduction by the highly corrosive Desulfovibrio ferrophilus IS5 strain to form surface attached Pd nanoparticles, as well as rapid formation of Pd(0) coated microbial nanowires. These filaments reached up to 8 µm in length and led to the formation of a tightly bound group of interconnected cells with enhanced ability to attach to a low carbon steel surface. Moreover, when supplied with high concentrations of Pd (≥ 100 mmol Pd(II) g-1 dry cells), both Desulfovibrio desulfuricans and D. ferrophilus IS5 formed bacteria/Pd hybrid porous microstructures comprising millions of cells. These three-dimensional structures reached up to 3 mm in diameter with a dose of 1200 mmol Pd(II) g-1 dry cells. Under suitable hydrodynamic conditions during reduction, two-dimensional nanosheets of Pd metal were formed that were up to several cm in length. Lower dosing of Pd(II) for promoting rapid synthesis of metal coated nanowires and enhanced attachment of cells onto metal surfaces could improve the efficiency of various biotechnological applications such as microbial fuel cells. Formation of biologically stimulated Pd microstructures could lead to a novel way to produce metal scaffolds or nanosheets for a wide variety of applications.
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Affiliation(s)
- Stephen P Voegtlin
- Department of Chemical and Petroleum Engineering, University of Calgary, Calgary, Canada
| | - Robert J Barnes
- Department of Chemical and Petroleum Engineering, University of Calgary, Calgary, Canada; Department of Biological Sciences, University of Calgary, Calgary, Canada
| | - Casey R J Hubert
- Department of Biological Sciences, University of Calgary, Calgary, Canada
| | - Stephen R Larter
- Department of Geosciences, University of Calgary, Calgary, Canada
| | - Steven L Bryant
- Department of Chemical and Petroleum Engineering, University of Calgary, Calgary, Canada.
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3
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Mikhailova EO. Green Synthesis of Platinum Nanoparticles for Biomedical Applications. J Funct Biomater 2022; 13:jfb13040260. [PMID: 36412901 PMCID: PMC9680517 DOI: 10.3390/jfb13040260] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2022] [Revised: 11/11/2022] [Accepted: 11/17/2022] [Indexed: 11/24/2022] Open
Abstract
The diverse biological properties of platinum nanoparticles (PtNPs) make them ideal for use in the development of new tools in therapy, diagnostics, and other biomedical purposes. "Green" PtNPs synthesis is of great interest as it is eco-friendly, less energy-consuming and minimizes the amount of toxic by-products. This review is devoted to the biosynthesis properties of platinum nanoparticles based on living organisms (bacteria, fungi, algae, and plants) use. The participation of various biological compounds in PtNPs synthesis is highlighted. The biological activities of "green" platinum nanoparticles (antimicrobial, anticancer, antioxidant, etc.), the proposed mechanisms of influence on target cells and the potential for their further biomedical application are discussed.
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Affiliation(s)
- Ekaterina O Mikhailova
- Institute of Innovation Management, Kazan National Research Technological University, K. Marx Street 68, 420015 Kazan, Russia
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4
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Echavarri-Bravo V, Amari H, Hartley J, Maddalena G, Kirk C, Tuijtel MW, Browning ND, Horsfall LE. Selective bacterial separation of critical metals: towards a sustainable method for recycling lithium ion batteries. GREEN CHEMISTRY : AN INTERNATIONAL JOURNAL AND GREEN CHEMISTRY RESOURCE : GC 2022; 24:8512-8522. [PMID: 36353209 PMCID: PMC9621301 DOI: 10.1039/d2gc02450k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/01/2022] [Accepted: 10/11/2022] [Indexed: 06/16/2023]
Abstract
The large scale recycling of lithium ion batteries (LIBs) is essential to satisfy global demands for the raw materials required to implement this technology as part of a clean energy strategy. However, despite what is rapidly becoming a critical need, an efficient and sustainable recycling process for LIBs has yet to be developed. Biological reactions occur with great selectivity under mild conditions, offering new avenues for the implementation of more environmentally sustainable processes. Here, we demonstrate a sequential process employing two bacterial species to recover Mn, Co and Ni, from vehicular LIBs through the biosynthesis of metallic nanoparticles, whilst Li remains within the leachate. Moreover the feasibility of Mn recovery from polymetallic solutions was demonstrated at semi-pilot scale in a 30 L bioreactor. Additionally, to provide insight into the biological process occurring, we investigated selectivity between Co and Ni using proteomics to identify the biological response and confirm the potential of a bio-based method to separate these two essential metals. Our approach determines the principles and first steps of a practical bio-separation and recovery system, underlining the relevance of harnessing biological specificity for recycling and up-cycling critical materials.
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Affiliation(s)
- Virginia Echavarri-Bravo
- School of Biological Sciences, University of Edinburgh Edinburgh EH9 3FF UK
- Faraday Institution (ReLiB project) Quad One Harwell Science and Innovation Campus Didcot UK
| | - Houari Amari
- Department of Mechanical, Materials and Aerospace Engineering, University of Liverpool Liverpool L69 3GQ UK
- Faraday Institution (ReLiB project) Quad One Harwell Science and Innovation Campus Didcot UK
| | - Jennifer Hartley
- School of Chemistry, University of Leicester Leicester LE1 7RH UK
- Faraday Institution (ReLiB project) Quad One Harwell Science and Innovation Campus Didcot UK
| | - Giovanni Maddalena
- School of Biological Sciences, University of Edinburgh Edinburgh EH9 3FF UK
- Faraday Institution (ReLiB project) Quad One Harwell Science and Innovation Campus Didcot UK
| | - Caroline Kirk
- School of Chemistry, University of Edinburgh Edinburgh EH9 3FJ UK
| | - Maarten W Tuijtel
- School of Biological Sciences, University of Edinburgh Edinburgh EH9 3FF UK
| | - Nigel D Browning
- Department of Mechanical, Materials and Aerospace Engineering, University of Liverpool Liverpool L69 3GQ UK
- Faraday Institution (ReLiB project) Quad One Harwell Science and Innovation Campus Didcot UK
- Sivananthan Laboratories 590 Territorial Drive Bolingbrook IL 60440 USA
- Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory P.O. Box 999 Richland WA 99352 USA
| | - Louise E Horsfall
- School of Biological Sciences, University of Edinburgh Edinburgh EH9 3FF UK
- Faraday Institution (ReLiB project) Quad One Harwell Science and Innovation Campus Didcot UK
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5
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Chatzipanagiotou KR, Jourdin L, Bitter H, Strik D. Concentration-dependent effects of nickel doping on activated carbon biocathodes. Catal Sci Technol 2022. [DOI: 10.1039/d1cy02151f] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In microbial electrosynthesis (MES), microorganisms grow on a cathode electrode as biofilm, or in the catholyte as planktonic biomass, and utilize CO2 for their growth and metabolism. Modification of the...
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6
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Era Y, Dennis JA, Wallace S, Horsfall LE. Micellar catalysis of the Suzuki Miyaura reaction using biogenic Pd nanoparticles from Desulfovibrio alaskensis. GREEN CHEMISTRY : AN INTERNATIONAL JOURNAL AND GREEN CHEMISTRY RESOURCE : GC 2021; 23:8886-8890. [PMID: 34912180 PMCID: PMC8593813 DOI: 10.1039/d1gc02392f] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2021] [Accepted: 09/22/2021] [Indexed: 06/02/2023]
Abstract
Microorganisms produce metal nanoparticles (MNPs) upon exposure to toxic metal ions. However, the catalytic activity of biosynthesised MNPs remains underexplored, despite the potential of these biological processes to be used for the sustainable recovery of critical metals, including palladium. Herein we report that biogenic palladium nanoparticles generated by the sulfate-reducing bacterium Desulfovibrio alaskensis G20 catalyse the ligand-free Suzuki Miyaura reaction of abiotic substrates. The reaction is highly efficient (>99% yield, 0.5 mol% Pd), occurs under mild conditions (37 °C, aqueous media) and can be accelerated within biocompatible micelles at the cell membrane to yield products containing challenging biaryl bonds. This work highlights how native metabolic processes in anaerobic bacteria can be combined with green chemical technologies to produce highly efficient catalytic reactions for use in sustainable organic synthesis.
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Affiliation(s)
- Yuta Era
- Institute of Quantitative Biology, Biochemistry and Biotechnology, School of Biological Sciences, University of Edinburgh Roger Land Building Alexander Crum Brown Road King's Buildings Edinburgh EH9 3FF UK
| | - Jonathan A Dennis
- Institute of Quantitative Biology, Biochemistry and Biotechnology, School of Biological Sciences, University of Edinburgh Roger Land Building Alexander Crum Brown Road King's Buildings Edinburgh EH9 3FF UK
- School of Chemistry, University of Edinburgh Joseph Black Building David Brewster Road King's Buildings Edinburgh EH9 3F UK
| | - Stephen Wallace
- Institute of Quantitative Biology, Biochemistry and Biotechnology, School of Biological Sciences, University of Edinburgh Roger Land Building Alexander Crum Brown Road King's Buildings Edinburgh EH9 3FF UK
| | - Louise E Horsfall
- Institute of Quantitative Biology, Biochemistry and Biotechnology, School of Biological Sciences, University of Edinburgh Roger Land Building Alexander Crum Brown Road King's Buildings Edinburgh EH9 3FF UK
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7
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Bloch K, Pardesi K, Satriano C, Ghosh S. Bacteriogenic Platinum Nanoparticles for Application in Nanomedicine. Front Chem 2021; 9:624344. [PMID: 33763405 PMCID: PMC7982945 DOI: 10.3389/fchem.2021.624344] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2020] [Accepted: 01/12/2021] [Indexed: 12/11/2022] Open
Abstract
Nanoscale materials have recently gained wide attention due to their potential to revolutionize many technologies and industrial sectors, including information technology, homeland security, transportation, energy, food safety, environmental science, catalysis, photonics and medicine. Among various nanoparticles, platinum nanoparticles (PtNPs) are widely used for biomedical applications, including imaging, implants, photothermal therapy and drug delivery. Indeed, PtNPs possesses intrinsic antimicrobial, antioxidant, and anticancer properties. Also, due to their remarkable catalytic activity, they are able to reduce the intracellular reactive oxygen species (ROS) levels and impair the downstream pathways leading to inflammation. Various approaches, including both physical and chemical methods, are currently employed for synthesis of PtNPs. However, the use of hazardous reaction conditions and toxic chemicals in these processes poses a potential threat to the environment and severely compromise the biocompatibility of the nanoparticles. Hereby, increasing need for exploitation of novel routes for synthesis of PtNPs has led to development of biological fabrication using microbes, specifically bacteria. Herein, we present a most comprehensive report on biogenesis of PtNPs by several bacteria like Acinetobacter calcoaceticus, Desulfovibrio alaskensis, Escherichia coli, Shewanella algae, Plectonema boryanum, etc. An overview of the underlying mechanisms of both enzymatic and non-enzymatic methods of synthesis is included. Moreover, this review highlights the scope of developing optimized process to control the physicochemical properties, such as the nanoparticle surface chemistry, charge, size and shape, which, in turn, may affect their nanotoxicity and response at the biointerface for nanomedicine applications.
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Affiliation(s)
- Khalida Bloch
- Department of Microbiology, School of Science, RK University, Rajkot, India
| | - Karishma Pardesi
- Department of Microbiology, Savitribai Phule Pune University, Pune, India
| | - Cristina Satriano
- Department of Chemical Sciences, University of Catania, Catania, Italy
| | - Sougata Ghosh
- Department of Microbiology, School of Science, RK University, Rajkot, India
- Department of Chemical Engineering, Northeastern University, Boston, MA, United States
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8
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Saravanan A, Kumar PS, Karishma S, Vo DVN, Jeevanantham S, Yaashikaa PR, George CS. A review on biosynthesis of metal nanoparticles and its environmental applications. CHEMOSPHERE 2021; 264:128580. [PMID: 33059285 DOI: 10.1016/j.chemosphere.2020.128580] [Citation(s) in RCA: 107] [Impact Index Per Article: 35.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2020] [Revised: 10/01/2020] [Accepted: 10/05/2020] [Indexed: 05/02/2023]
Abstract
Nanotechnology has become one of the emerging multi-disciplinary fields receiving universal attention and playing a substantial role in agriculture, environment and pharmacology. In spite of various techniques employed for nanoparticle synthesis such as laser ablation, mechanical milling, spinning and chemical deposition, usage of hazardous chemicals and expensiveness of the process makes it unsuitable for the continuous production. Hence the necessity of sustainable, economic and environment friendly approach development have increased in recent years. Microbial synthesis of nanoparticles connecting microbiology and nanotechnology is one of the green techniques employed for sustainable production. Gold, silver and other metal nanoparticles like platinum, palladium, molybdenum nanoparticles biosynthesis by bacteria, fungi, yeast and algae have been reported in the present review. On account of microbial rich community, several microbes have been explored for the production of nanoparticles. Nanoparticles are also employed for environmental remediation processes such as pollutant removal and detection of contaminants. Lack of monodispersity and prolonged duration of synthesis are the limitations of bio-synthesis process which can be overcome by optimization of methods of microbial cultivation and its extraction techniques. The current review describes the different microbes involved in the synthesis of nanoparticles and its environmental applications.
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Affiliation(s)
- A Saravanan
- Department of Biotechnology, Rajalakshmi Engineering College, Chennai, 602105, India
| | - P Senthil Kumar
- Department of Chemical Engineering, Sri Sivasubramaniya Nadar College of Engineering, Chennai, 603 110, India.
| | - S Karishma
- Department of Biotechnology, Rajalakshmi Engineering College, Chennai, 602105, India
| | - Dai-Viet N Vo
- Center of Excellence for Green Energy and Environmental Nanomaterials (CE@GrEEN), Nguyen Tat Thanh University, Ho Chi Minh City, Viet Nam
| | - S Jeevanantham
- Department of Biotechnology, Rajalakshmi Engineering College, Chennai, 602105, India
| | - P R Yaashikaa
- Department of Chemical Engineering, Sri Sivasubramaniya Nadar College of Engineering, Chennai, 603 110, India
| | - Cynthia Susan George
- Department of Chemical Engineering, Sri Sivasubramaniya Nadar College of Engineering, Chennai, 603 110, India
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9
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Deng X, Saito J, Kaksonen A, Okamoto A. Enhancement of cell growth by uncoupling extracellular electron uptake and oxidative stress production in sediment sulfate-reducing bacteria. ENVIRONMENT INTERNATIONAL 2020; 144:106006. [PMID: 32795748 DOI: 10.1016/j.envint.2020.106006] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2020] [Revised: 06/25/2020] [Accepted: 07/20/2020] [Indexed: 06/11/2023]
Abstract
Microbial extracellular electron uptake (EEU) from solid electron donors has critical implications for microbial energy acquisition in energy-limited environments as well as electrochemical microbial technologies. Although EEU supplies sufficient energy to support cellular growth, additional soluble electron donors are required for most microbes to grow on electrode surfaces. Here, we demonstrated that the minimization of exogenous and endogenous oxidative stress greatly enhanced the growth rate of the sediment EEU-capable sulfate-reducing bacterium Desulfovibrio ferrophilus IS5 on an electrode without the addition of a soluble electron donor. Single-cell activity analysis by nanoscale secondary ion mass spectrometry showed that the metabolic activity of IS5 cells on the electrode was significantly enhanced following incubation in an H-type reactor, which was configured to reduce the exposure of cells to the potential oxidative stress source of the Pt counter electrode (CE). Additionally, the highest metabolic activity was observed at an electrode potential of -0.4 V (versus the standard hydrogen electrode), where electron uptake rate was not at peak. Compared to a single-chamber reactor, incubation in an H-type reactor at -0.4 V shortened the cell doubling time by 50-fold, which resulted in sufficient anabolism for cell replication (15N/Ntotal > 50%). The production of strongly oxidizing species at the CE was confirmed by X-ray photoelectron spectroscopy and inductively coupled plasma mass spectrometry analyses. Transcriptome analysis revealed overexpression of antioxidative genes in cells incubated at a potential with higher current production. These results suggested that higher levels of endogenous oxidative species were produced by a more reduced electron-transport chain from trace amounts of oxygen in the reactor, thereby lowering cell activity. In conclusion, EEU may enable sediment microbes to undergo enhanced cell growth and to find niches on minerals under anaerobic energy-limited conditions, where oxidative stress is much less likely to be present.
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Affiliation(s)
- Xiao Deng
- International Center for Materials Nanoarchitectonics, National Institute for Materials Science, 1-1 Namiki, Tsukuba 305-0044, Japan; Center for Sensor and Actuator Material, National Institute for Materials Science, 1-1 Namiki, Tsukuba, Ibaraki 305-0044, Japan; School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku 113-8656, Japan; CSIRO Land and Water, 147 Underwood Avenue, Floreat, WA 6014, Australia
| | - Junki Saito
- International Center for Materials Nanoarchitectonics, National Institute for Materials Science, 1-1 Namiki, Tsukuba 305-0044, Japan; School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku 113-8656, Japan
| | - Anna Kaksonen
- CSIRO Land and Water, 147 Underwood Avenue, Floreat, WA 6014, Australia; School of Biomedical Sciences, University of Western Australia, 35 Stirling Highway, Nedlands, WA 6009, Australia
| | - Akihiro Okamoto
- International Center for Materials Nanoarchitectonics, National Institute for Materials Science, 1-1 Namiki, Tsukuba 305-0044, Japan; Center for Sensor and Actuator Material, National Institute for Materials Science, 1-1 Namiki, Tsukuba, Ibaraki 305-0044, Japan; Graduate School of Chemical Sciences and Engineering, Hokkaido University, North 13 West 8, Kita-ku, Sapporo, Hokkaido 060-8628, Japan.
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10
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Green biogenic approach to optimized biosynthesis of noble metal nanoparticles with potential catalytic, antioxidant and antihaemolytic activities. Process Biochem 2020. [DOI: 10.1016/j.procbio.2020.08.005] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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11
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Capeness MJ, Horsfall LE. Synthetic biology approaches towards the recycling of metals from the environment. Biochem Soc Trans 2020; 48:1367-1378. [PMID: 32627824 PMCID: PMC7458392 DOI: 10.1042/bst20190837] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2020] [Revised: 05/29/2020] [Accepted: 06/08/2020] [Indexed: 01/05/2023]
Abstract
Metals are a finite resource and their demand for use within existing and new technologies means metal scarcity is increasingly a global challenge. Conversely, there are areas containing such high levels of metal pollution that they are hazardous to life, and there is loss of material at every stage of the lifecycle of metals and their products. While traditional resource extraction methods are becoming less cost effective, due to a lowering quality of ore, industrial practices have begun turning to newer technologies to tap into metal resources currently locked up in contaminated land or lost in the extraction and manufacturing processes. One such technology uses biology for the remediation of metals, simultaneously extracting resources, decontaminating land, and reducing waste. Using biology for the identification and recovery of metals is considered a much 'greener' alternative to that of chemical methods, and this approach is about to undergo a renaissance thanks to synthetic biology. Synthetic biology couples molecular genetics with traditional engineering principles, incorporating a modular and standardised practice into the assembly of genetic parts. This has allowed the use of non-model organisms in place of the normal laboratory strains, as well as the adaption of environmentally sourced genetic material to standardised parts and practices. While synthetic biology is revolutionising the genetic capability of standard model organisms, there has been limited incursion into current practices for the biological recovery of metals from environmental sources. This mini-review will focus on some of the areas that have potential roles to play in these processes.
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Affiliation(s)
- Michael J. Capeness
- Centre for Systems and Synthetic Biology, and the Centre for Science at Extreme Conditions, School of Biological Sciences, University of Edinburgh, Roger Land Building, Alexander Crum Brown Road, Edinburgh EH9 3FF, U.K
| | - Louise E. Horsfall
- Centre for Systems and Synthetic Biology, and the Centre for Science at Extreme Conditions, School of Biological Sciences, University of Edinburgh, Roger Land Building, Alexander Crum Brown Road, Edinburgh EH9 3FF, U.K
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12
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Pantidos N, Horsfall L. Understanding the role of SilE in the production of metal nanoparticles by Morganella psychrotolerans using MicroScale Thermophoresis. N Biotechnol 2020; 55:1-4. [PMID: 31539639 DOI: 10.1016/j.nbt.2019.09.002] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2018] [Revised: 09/06/2019] [Accepted: 09/14/2019] [Indexed: 10/26/2022]
Abstract
Metal nanoparticle synthesis has been observed in several species of bacteria but the underlying mechanisms of synthesis are not well understood. Morganella psychrotolerans is a Gram-negative psychrophilic bacterium that is able to tolerate relatively high concentrations of Cu and Ag ions, and it is through the associated resistance pathways that this species is able to convert metal ions to nanoparticles. The purpose of this study was to investigate the mechanism of nanoparticle synthesis, looking at the interaction of the metal binding protein SilE with metal ions using MicroScale Thermophoresis (MST). MST assays give a rapid and accurate determination of binding affinities, allowing for the testing of SilE with a range of environmentally significant metal ions. The binding affinities (Kd) of Ag+ and Cu2+ were measured as 0.17 mM and 0.13 mM respectively, consistent with the observations of strong binding reported in the literature, whereas the binding to Al3+ and Co2+ was measured as Kd values of 4.19 mM and 1.35 mM respectively.
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Affiliation(s)
- Nikolaos Pantidos
- School of Biological Sciences and Centre for Science at Extreme Conditions, University of Edinburgh, The King's Buildings, Alexander Crum Brown Road, Roger Land Building, Edinburgh, EH9 3FF, United Kingdom
| | - Louise Horsfall
- School of Biological Sciences and Centre for Science at Extreme Conditions, University of Edinburgh, The King's Buildings, Alexander Crum Brown Road, Roger Land Building, Edinburgh, EH9 3FF, United Kingdom.
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13
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Capeness MJ, Imrie L, Mühlbauer LF, Le Bihan T, Horsfall LE. Shotgun proteomic analysis of nanoparticle-synthesizing Desulfovibrio alaskensis in response to platinum and palladium. MICROBIOLOGY-SGM 2019; 165:1282-1294. [PMID: 31361216 PMCID: PMC7376266 DOI: 10.1099/mic.0.000840] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Platinum and palladium are much sought-after metals of critical global importance in terms of abundance and availability. At the nano-scale these metals are of even higher value due to their catalytic abilities for industrial applications. Desulfovibrio alaskensis is able to capture ionic forms of both of these metals, reduce them and synthesize elemental nanoparticles. Despite this ability, very little is known about the biological pathways involved in the formation of these nanoparticles. Proteomic analysis of D. alaskensis in response to platinum and palladium has highlighted those proteins involved in both the reductive pathways and the wider stress-response system. A core set of 13 proteins was found in both treatments and consisted of proteins involved in metal transport and reduction. There were also seven proteins that were specific to either platinum or palladium. Overexpression of one of these platinum-specific genes, a NiFe hydrogenase small subunit (Dde_2137), resulted in the formation of larger nanoparticles. This study improves our understanding of the pathways involved in the metal resistance mechanism of Desulfovibrio and is informative regarding how we can tailor the bacterium for nanoparticle production, enhancing its application as a bioremediation tool and as a way to capture contaminant metals from the environment.
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Affiliation(s)
- Michael J Capeness
- Institute of Quantitative Biology, Biochemistry and Biotechnology/CSEC, School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3FF, UK
| | - Lisa Imrie
- EdinOmics, SynthSys, CH Waddington Building, Max Born Crescent, The King's Buildings, Edinburgh, EH9 3BF, UK
| | - Lukas F Mühlbauer
- Institute of Quantitative Biology, Biochemistry and Biotechnology/CSEC, School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3FF, UK
| | - Thierry Le Bihan
- Currently: Rapid Novor, Inc., Kitchener, Ontario N2G 4P3, Canada.,EdinOmics, SynthSys, CH Waddington Building, Max Born Crescent, The King's Buildings, Edinburgh, EH9 3BF, UK
| | - Louise E Horsfall
- Institute of Quantitative Biology, Biochemistry and Biotechnology/CSEC, School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3FF, UK
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14
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Capeness MJ, Echavarri-Bravo V, Horsfall LE. Production of Biogenic Nanoparticles for the Reduction of 4-Nitrophenol and Oxidative Laccase-Like Reactions. Front Microbiol 2019; 10:997. [PMID: 31143166 PMCID: PMC6520526 DOI: 10.3389/fmicb.2019.00997] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2018] [Accepted: 04/18/2019] [Indexed: 01/01/2023] Open
Abstract
Biogenic nanoparticles present a wide range of possibilities for use in industrial applications, their production is greener, they can be manufactured using impure feedstocks, and often have different catalytic abilities compared to their chemically made analogs. Nanoparticles of Ag, Pd, Pt, and the bi-elemental PdPt were produced by Morganella psychrotolerans and Desulfovibrio alaskensis and were shown to be able to reduce 4-nitrophenol, an industrial and toxic pollutant. Nanoparticles were recovered post-reaction and then reused, thus demonstrating continued activity. Biogenic PdNPs were shown to have enhanced specificity in a wide pH activity range in the oxidation of the three common substrates used 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulphonic acid) (ABTS), 2,6-Dimethoxyphenol and (2,6-DMP) and 3,3',5,5'-Tetramethylbenzidine (TMB) to determine oxidase-like activity. Overall Pd in a nanoparticle form exhibited higher oxidation activity than its ionic counterpart, highlighting the potential of biogenic nanoparticles over the use of ions or chemically made elemental forms.
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Affiliation(s)
- Michael J. Capeness
- Institute of Quantitative Biology, Biochemistry and Biotechnology, School of Biological Sciences, The University of Edinburgh, Edinburgh, United Kingdom
- Centre for Science at Extreme Conditions, School of Biological Sciences, The University of Edinburgh, Edinburgh, United Kingdom
| | - Virginia Echavarri-Bravo
- Institute of Quantitative Biology, Biochemistry and Biotechnology, School of Biological Sciences, The University of Edinburgh, Edinburgh, United Kingdom
- Centre for Science at Extreme Conditions, School of Biological Sciences, The University of Edinburgh, Edinburgh, United Kingdom
| | - Louise E. Horsfall
- Institute of Quantitative Biology, Biochemistry and Biotechnology, School of Biological Sciences, The University of Edinburgh, Edinburgh, United Kingdom
- Centre for Science at Extreme Conditions, School of Biological Sciences, The University of Edinburgh, Edinburgh, United Kingdom
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Simon-Pascual A, Sierra-Alvarez R, Field JA. Platinum(II) reduction to platinum nanoparticles in anaerobic sludge. JOURNAL OF CHEMICAL TECHNOLOGY AND BIOTECHNOLOGY (OXFORD, OXFORDSHIRE : 1986) 2019; 94:468-474. [PMID: 31105372 PMCID: PMC6521854 DOI: 10.1002/jctb.5791] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2018] [Accepted: 08/01/2018] [Indexed: 06/09/2023]
Abstract
BACKGROUND To help mitigate future problems in the supply of platinum group metals (PGM) due to their scarcity and high demand, new recovery processes must be developed. Microbial processes are a great alternative for the recovery of PGM from waste since they are clean and environmentally friendly techniques. This research studied the microbial reduction of Pt(II) using an anaerobic granular sludge under different physiological conditions. RESULTS The anaerobic granular sludge was able to reduce Pt(II) to Pt(0) nanoparticles that were deposited intracellularly as well as extracellularly as confirmed by X-ray diffraction (XRD) and transmission electron microscopy (TEM) analyses. Hydrogen (H2) and formate supported the chemical reduction of Pt(II) while ethanol supported the biologically catalyzed reduction of Pt(II). Increasing initial concentrations of Pt(II), ethanol or biomass were each shown to increase the Pt(II) reduction rates. CONCLUSIONS This study reported for the first time the reduction of Pt(II) using anaerobic granular sludge and provided insights that could help develop biorecovery techniques to alleviate future problems in the supply of PGMs.
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Affiliation(s)
- Alvaro Simon-Pascual
- Department of Chemical and Environmental Engineering, University of Arizona, 1133 James E. Rogers Way, Tucson, AZ 85721, USA
| | - Reyes Sierra-Alvarez
- Department of Chemical and Environmental Engineering, University of Arizona, 1133 James E. Rogers Way, Tucson, AZ 85721, USA
| | - Jim A. Field
- Department of Chemical and Environmental Engineering, University of Arizona, 1133 James E. Rogers Way, Tucson, AZ 85721, USA
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Ali MM, Provoost A, Maertens L, Leys N, Monsieurs P, Charlier D, Van Houdt R. Genomic and Transcriptomic Changes that Mediate Increased Platinum Resistance in Cupriavidus metallidurans. Genes (Basel) 2019; 10:E63. [PMID: 30669395 PMCID: PMC6357080 DOI: 10.3390/genes10010063] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2018] [Revised: 01/11/2019] [Accepted: 01/15/2019] [Indexed: 12/15/2022] Open
Abstract
The extensive anthropogenic use of platinum, a rare element found in low natural abundance in the Earth's continental crust and one of the critical raw materials in the EU innovation partnership framework, has resulted in increased concentrations in surface environments. To minimize its spread and increase its recovery from the environment, biological recovery via different microbial systems is explored. In contrast, studies focusing on the effects of prolonged exposure to Pt are limited. In this study, we used the metal-resistant Cupriavidus metallidurans NA4 strain to explore the adaptation of environmental bacteria to platinum exposure. We used a combined Nanopore⁻Illumina sequencing approach to fully resolve all six replicons of the C. metallidurans NA4 genome, and compared them with the C. metallidurans CH34 genome, revealing an important role in metal resistance for its chromid rather than its megaplasmids. In addition, we identified the genomic and transcriptomic changes in a laboratory-evolved strain, displaying resistance to 160 µM Pt4+. The latter carried 20 mutations, including a large 69.9 kb deletion in its plasmid pNA4_D (89.6 kb in size), and 226 differentially-expressed genes compared to its parental strain. Many membrane-related processes were affected, including up-regulation of cytochrome c and a lytic transglycosylase, down-regulation of flagellar and pili-related genes, and loss of the pNA4_D conjugative machinery, pointing towards a significant role in the adaptation to platinum.
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Affiliation(s)
- Md Muntasir Ali
- Microbiology Unit, Belgian Nuclear Research Centre (SCK•CEN), 2400 Mol, Belgium.
- Research Group of Microbiology, Department of Bioengineering Sciences, Vrije Universiteit Brussel, 1050 Brussel, Belgium.
| | - Ann Provoost
- Microbiology Unit, Belgian Nuclear Research Centre (SCK•CEN), 2400 Mol, Belgium.
| | - Laurens Maertens
- Microbiology Unit, Belgian Nuclear Research Centre (SCK•CEN), 2400 Mol, Belgium.
- Research Unit in Biology of Microorganisms (URBM), Faculty of Sciences, UNamur, 5000 Namur, Belgium.
| | - Natalie Leys
- Microbiology Unit, Belgian Nuclear Research Centre (SCK•CEN), 2400 Mol, Belgium.
| | - Pieter Monsieurs
- Microbiology Unit, Belgian Nuclear Research Centre (SCK•CEN), 2400 Mol, Belgium.
| | - Daniel Charlier
- Research Group of Microbiology, Department of Bioengineering Sciences, Vrije Universiteit Brussel, 1050 Brussel, Belgium.
| | - Rob Van Houdt
- Microbiology Unit, Belgian Nuclear Research Centre (SCK•CEN), 2400 Mol, Belgium.
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Ali I, Peng C, Khan ZM, Naz I, Sultan M, Ali M, Abbasi IA, Islam T, Ye T. Overview of microbes based fabricated biogenic nanoparticles for water and wastewater treatment. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2019; 230:128-150. [PMID: 30286344 DOI: 10.1016/j.jenvman.2018.09.073] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2017] [Revised: 08/14/2018] [Accepted: 09/22/2018] [Indexed: 06/08/2023]
Abstract
Treatment of toxic and emerging pollutants (T&EPs) is increasing the threats to the survival of conventional wastewater treatment (WWTs) technologies. The high installation and operational costs of advanced treatment technologies have shifted the research interest to the development of economical and reliable technology for management of T&EPs. Thus, recently biogenic nanoparticles (BNPs) fabricated using microbes/microorganisms are getting tremendous research interest due to their unique properties (i.e. high specific surface area, desired morphology, catalytic reactivity) for the biodegradation and biosorption of T&EPs. In addition, BNPs can be manufactured using metal contaminated water which indicates a hidden potential for resource recovery and utilization. Therefore, the present study discusses the adsorptive and catalytic performance of BNPs in the removal of T&EPs from water (W) and wastewater (WW). In addition, inspired by the superior performance of BNPs in advance WWT, a model of BNPs based WWT resource recovery and utilization process is also proposed. Finally, main issues i.e. mass production, leaching, poisoning/toxicity, regeneration, reusability and fabrication costs and process optimization are discussed which are main hinders in the transfer of BNPs based WWT technologies from laboratory to commercial scale.
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Affiliation(s)
- Imran Ali
- College of Environmental Science and Engineering, Ocean University of China, Qingdao 266100, China
| | - Changsheng Peng
- College of Environmental Science and Engineering, Ocean University of China, Qingdao 266100, China; The Key Lab of Marine Environmental Science and Ecology, Ministry of Education, Ocean University of China, Qingdao 266100, China; School of Environmental and Chemical Engineering, Zhaoqing University, Zhaoqing 526061, China.
| | - Zahid M Khan
- Department of Agricultural Engineering, Bahauddin Zakariya University, Bosan Road, Multan 60800, Pakistan
| | - Iffat Naz
- Department of Biology, Qassim University, Buraidah 51452, Saudi Arabia
| | - Muhammad Sultan
- Department of Agricultural Engineering, Bahauddin Zakariya University, Bosan Road, Multan 60800, Pakistan.
| | - Mohsin Ali
- Department of Environmental Engineering, Middle East Technical University, Ankara 0600, Turkey
| | - Irfan A Abbasi
- College of Environmental Science and Engineering, Ocean University of China, Qingdao 266100, China
| | - Tariqul Islam
- College of Environmental Science and Engineering, Ocean University of China, Qingdao 266100, China
| | - Tong Ye
- College of Environmental Science and Engineering, Ocean University of China, Qingdao 266100, China
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Ghosh S. Copper and palladium nanostructures: a bacteriogenic approach. Appl Microbiol Biotechnol 2018; 102:7693-7701. [PMID: 29998411 DOI: 10.1007/s00253-018-9180-5] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2018] [Revised: 06/14/2018] [Accepted: 06/16/2018] [Indexed: 01/25/2023]
Abstract
Copper nanoparticles (CuNPs) and palladium nanoparticles (PdNPs) have attracted wide attention owing to their multifaceted utility in catalysis, sensors, and biomedical applications. Their therapeutic spectrum includes anticancer, antiviral, antibacterial, antifungal, antidiabetic, antioxidant potential which rationalizes the exploration of diverse physical, chemical, and biological routes for fabrication. In this article, we focused on bacterium-assisted design of nanostructured copper and palladium for applications in therapy against multidrug-resistant pathogens, dehalogenation of diatrizoate, Heck coupling of iodobenzene, polymer electric membrane fuel cell, metal recovery, and electronic waste management. Further, hypothesis behind microbial synthesis of PdNPs in E. coli containing [NiFe] hydrogenase Hyd-1 is discussed. Similarly, detailed mechanism of synthesis and stabilization in Cyanobacteria is also documented. Both CuNPs and PdNPs act as potent chemotherapeutic agents that can further be enhanced by conjugation with drugs and/or fluorophores and ligands for simultaneous diagnosis and targeted drug delivery to the cancer site or infection. These bacteriogenic nanoparticles can be used in sensors and pollution control.
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Affiliation(s)
- Sougata Ghosh
- Department of Microbiology, School of Science, RK University, Kasturbadham, Rajkot, Gujarat, 360020, India.
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19
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Simon-Pascual A, Sierra-Alvarez R, Ramos-Ruiz A, Field JA. Reduction of platinum (IV) ions to elemental platinum nanoparticles by anaerobic sludge. JOURNAL OF CHEMICAL TECHNOLOGY AND BIOTECHNOLOGY (OXFORD, OXFORDSHIRE : 1986) 2018; 93:1611-1617. [PMID: 30140114 PMCID: PMC6101971 DOI: 10.1002/jctb.5530] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2017] [Accepted: 11/25/2017] [Indexed: 06/08/2023]
Abstract
BACKGROUND The future supply of platinum group metals (PGM) is at risk because of their scarcity combined with a high demand. Thus recovery of platinum (Pt) from waste is an option worthy of study to help alleviate future shortages. This research explored the microbial reduction of platinum (Pt). The ability of anaerobic granular sludge to reduce Pt(IV) ions under different physiological conditions was studied. RESULTS X-Ray diffraction (XRD) and transmission electron microscope (TEM) analyses demonstrated the capacity of the microbial mixed culture to reduce Pt(IV) to Pt(0) nanoparticles, which were deposited on the cell-surface and in the periplasmic space. Ethanol supported the biologically catalyzed Pt(IV) reduction, meanwhile other electron donors; hydrogen (H2) and formate, promoted the chemical reduction of Pt(IV) with some additional biological stimulation in the case of H2. A hypothesis is proposed in which H2 formed from the acetogenesis of ethanol is implicated in subsequent abiotic reduction of Pt(IV) indicating an integrated bio-chemical process. Endogenous controls also resulted in slow Pt(IV) removal from aqueous solution. Selected redox mediators, exemplified by riboflavin, enhanced the Pt(IV) reduction rate. CONCLUSION This study reported for the first time the ability of an anaerobic granular sludge to reduce Pt(IV) to elemental Pt(0) nanoparticles.
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Affiliation(s)
- Alvaro Simon-Pascual
- Department of Chemical and Environmental Engineering, University of Arizona, 1133 James E. Rogers Way, Tucson, AZ 85721, USA
| | - Reyes Sierra-Alvarez
- Department of Chemical and Environmental Engineering, University of Arizona, 1133 James E. Rogers Way, Tucson, AZ 85721, USA
| | - Adriana Ramos-Ruiz
- Department of Chemical and Environmental Engineering, University of Arizona, 1133 James E. Rogers Way, Tucson, AZ 85721, USA
| | - Jim A. Field
- Department of Chemical and Environmental Engineering, University of Arizona, 1133 James E. Rogers Way, Tucson, AZ 85721, USA
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20
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Athie-García MS, Piñón-Castillo HA, Muñoz-Castellanos LN, Ulloa-Ogaz AL, Martínez-Varela PI, Quintero-Ramos A, Duran R, Murillo-Ramirez JG, Orrantia-Borunda E. Cell wall damage and oxidative stress in Candida albicans ATCC10231 and Aspergillus niger caused by palladium nanoparticles. Toxicol In Vitro 2018; 48:111-120. [DOI: 10.1016/j.tiv.2018.01.006] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2017] [Revised: 01/04/2018] [Accepted: 01/09/2018] [Indexed: 02/06/2023]
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21
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Das KR, Kowshik M, Praveen Kumar MK, Kerkar S, Shyama SK, Mishra S. Native hypersaline sulphate reducing bacteria contributes to iron nanoparticle formation in saltpan sediment: A concern for aquaculture. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2018; 206:556-564. [PMID: 29127928 DOI: 10.1016/j.jenvman.2017.10.078] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2017] [Revised: 10/31/2017] [Accepted: 10/31/2017] [Indexed: 06/07/2023]
Abstract
A hypersaline dissimilatory sulphate reducing bacterium, strain LS4, isolated from the sediments of Ribander saltpan, Goa, India was found to produce (Fe2O3) maghemite nanoparticles. The presence of maghemite nanoparticles was also detected in the same sediment. Strain LS4 was isolated anaerobically on modified Hatchikian's media at 300 psu, growing optimally at 30 °C, 150 psu salinity and pH 7.8. Based on biochemical characteristics and 16S rRNA sequence analysis, the strain LS4 belongs to genus Desulfovibrio. This isolate synthesized iron oxide nanoparticles in vitro when challenged with FeCl3 & FeSO4 in the growth medium. The biological nanoparticles were characterized to be Fe2O3 nanoparticle of 19 nm size by X-ray diffraction, transmission electron microscopy, fourier transform infrared spectroscopy, scanning electron microscopy and energy-dispersive x-ray spectroscopy. Maghemite nanoparticles (5.63 mg g-1) were isolated from the saltpan sediment by magnetic separation which showed similar characteristic features to the Fe2O3 nanoparticle produced by strain LS4 with an average size of 18 nm. Traditionally Goan saltpans were used for aquaculture during the non-salt making season, thus effects of these nanoparticles on Zebra fish embryo development were checked, which resulted in developmental abnormalities and DNA damage in a dose dependent manner. With the increasing nanoparticle concentration (0.1 mg.L-1 to100 mg.L-1), the mortality rate increased with a decrease in the hatching rate (93.05 ± 2.4 to 25 ± 4.16%) and heart rate (150-120 beats per minute). The nanoparticle exposed embryos developed malformed larvae with a characteristic of pericardial edema, curved body, curved notochord, curved tail and curved tail tip. These results suggest that strain LS4 might be playing a role as a contributor in the formation of iron oxide nanoparticle in the Ribander saltpan sediment, however; its high concentration will have a negative impact on aquaculture in these saltpans.
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Affiliation(s)
- Kirti Ranjan Das
- Department of Biotechnology, Goa University, Taleigao Plateau, Goa, 403206, India
| | - Meenal Kowshik
- Department of Biological Sciences, BITS Pilani K K Birla Goa Campus, Goa, India
| | - M K Praveen Kumar
- Department of Zoology, Goa University, Taleigao Plateau, Goa, 403206, India
| | - Savita Kerkar
- Department of Biotechnology, Goa University, Taleigao Plateau, Goa, 403206, India.
| | - S K Shyama
- Department of Zoology, Goa University, Taleigao Plateau, Goa, 403206, India
| | - Samir Mishra
- Environmental Biotechnology Laboratory, School of Biotechnology, KIIT University, Odisha, 751024, India
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Sapojnikova N, Asatiani N, Kartvelishvili T, Asanishvili L, Zinkevich V, Bogdarina I, Mitchell J, Al-Humam A. A comparison of DNA fragmentation methods - Applications for the biochip technology. J Biotechnol 2017; 256:1-5. [PMID: 28666852 DOI: 10.1016/j.jbiotec.2017.06.1202] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2017] [Revised: 06/12/2017] [Accepted: 06/26/2017] [Indexed: 11/28/2022]
Abstract
The efficiency of hybridization signal detection in a biochip is affected by the method used for test DNA preparation, such as fragmentation, amplification and fluorescent labelling. DNA fragmentation is the commonest methods used and it is recognised as a critical step in biochip analysis. Currently methods used for DNA fragmentation are based either on sonication or on the enzymatic digestion. In this study, we compared the effect of different types of enzymatic DNA fragmentations, using DNase I to generate ssDNA breaks, NEBNext dsDNA fragmentase and SaqAI restrictase, on DNA labelling. DNA from different Desulfovibrio species was used as a substrate for these enzymes. Of the methods used, DNA fragmented by NEBNext dsDNA Fragmentase digestion was subsequently labelled with the greatest efficiency. As a result of this, the use of this enzyme to fragment target DNA increases the sensitivity of biochip-based detection significantly, and this is an important consideration when determining the presence of targeted DNA in ecological and medical samples.
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Affiliation(s)
- Nelly Sapojnikova
- Andronikashvili Institute of Physics, I. Javakhishvili Tbilisi State University,6 Tamarashvili Street, 0177 Tbilisi, Georgia.
| | - Nino Asatiani
- Andronikashvili Institute of Physics, I. Javakhishvili Tbilisi State University,6 Tamarashvili Street, 0177 Tbilisi, Georgia
| | - Tamar Kartvelishvili
- Andronikashvili Institute of Physics, I. Javakhishvili Tbilisi State University,6 Tamarashvili Street, 0177 Tbilisi, Georgia
| | - Lali Asanishvili
- Andronikashvili Institute of Physics, I. Javakhishvili Tbilisi State University,6 Tamarashvili Street, 0177 Tbilisi, Georgia
| | - Vitaly Zinkevich
- School of Pharmacy and Biomedical Sciences, University of Portsmouth,St. Michael's Building, White Swan Road, PO1 2DT, UK
| | - Irina Bogdarina
- School of Pharmacy and Biomedical Sciences, University of Portsmouth,St. Michael's Building, White Swan Road, PO1 2DT, UK
| | - Julian Mitchell
- School of Biological Sciences, University of Portsmouth,King Henry Building, King Henry I Street, PO1 2DY, UK
| | - Abdulmohsen Al-Humam
- Applied Microbiology Unit, Research & Development Center Saudi Aramco, P.O. Box. 00865, 31311 Dhahran, Saudi Arabia, Saudi Arabia
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23
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Bio-Reclamation of Strategic and Energy Critical Metals from Secondary Resources. METALS 2017. [DOI: 10.3390/met7060207] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Essa AMM, Khallaf MK. Antimicrobial potential of consolidation polymers loaded with biological copper nanoparticles. BMC Microbiol 2016; 16:144. [PMID: 27400968 PMCID: PMC4940715 DOI: 10.1186/s12866-016-0766-8] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2016] [Accepted: 07/08/2016] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Biodeterioration of historic monuments and stone works by microorganisms takes place as a result of biofilm production and secretion of organic compounds that negatively affect on the stone matrix. METHODS Copper nanoparticles (CuNPs) were prepared biologically using the headspace gases generated by the bacterial culture Escherichia coli Z1. The antimicrobial activity of CuNPs was evaluated against the bacterial strains Bacillus subtilis, Micrococcus luteus, Streptomyces parvulus, Escherichia coli, Pseudomonas aeruginosa as well as some fungal strains Aspergillus niger, Aspergillus flavus, Penicillium chrysogenum, Fusarium solani and Alternaria solani. RESULTS Biological CuNPs demonstrated antibacterial and antifungal activities higher than those of the untreated copper sulfate. At the same time, limestone and sandstone blocks treated with consolidation polymers functionalized with CuNPs recorded apparent antimicrobial activity against E. coli, S. parvulus and B. subtilis in addition to an improvement in the physical and mechanical characters of the treated stones. Furthermore, the elemental composition of CuNPs was elucidated using electron dispersive x-ray system connected with the scanning electron microscope. CONCLUSION Consolidation polymers impregnated with CuNPs could be used to restrain microbial deterioration in addition to the refinement of physico-mechanical behavior of the historic stones.
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Affiliation(s)
- Ashraf M M Essa
- Botany Department, Faculty of Science, Fayoum University, Fayoum, Egypt. .,Biology Department, Faculty of Science, Jazan University, Jazan, Saudi Arabia.
| | - Mohamed K Khallaf
- Conservation Department, Faculty of Archaeology, Fayoum University, Fayoum, Egypt
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Nancharaiah Y, Mohan SV, Lens P. Biological and Bioelectrochemical Recovery of Critical and Scarce Metals. Trends Biotechnol 2016; 34:137-155. [DOI: 10.1016/j.tibtech.2015.11.003] [Citation(s) in RCA: 142] [Impact Index Per Article: 17.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2015] [Revised: 11/13/2015] [Accepted: 11/16/2015] [Indexed: 12/27/2022]
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Edmundson MC, Horsfall L. Construction of a Modular Arsenic-Resistance Operon in E. coli and the Production of Arsenic Nanoparticles. Front Bioeng Biotechnol 2015; 3:160. [PMID: 26539432 PMCID: PMC4611968 DOI: 10.3389/fbioe.2015.00160] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2015] [Accepted: 09/28/2015] [Indexed: 11/29/2022] Open
Abstract
Arsenic is a widespread contaminant of both land and water around the world. Current methods of decontamination such as phytoremediation and chemical adsorbents can be resource and time intensive, and may not be suitable for some areas such as remote communities where cost and transportation are major issues. Bacterial decontamination, with strict controls preventing environmental release, may offer a cost-effective alternative or provide a financial incentive when used in combination with other remediation techniques. In this study, we have produced Escherichia coli strains containing arsenic-resistance genes from a number of sources, overexpressing them and testing their effects on arsenic resistance. While the lab E. coli strain JM109 (the “wild-type”) is resistant up to 20 mM sodium arsenate, the strain containing our plasmid pEC20 is resistant up to 80 mM. When combined with our construct pArsRBCC arsenic-containing nanoparticles were observed at the cell surface; the elements of pEC20 and pArsRBCC were therefore combined in a modular construct, pArs, in order to evaluate the roles and synergistic effects of the components of the original plasmids in arsenic resistance and nanoparticle formation. We have also investigated introducing the lac operator in order to more tightly control expression from pArs. We demonstrate that our strains are able to reduce toxic forms of arsenic into stable, insoluble metallic As(0), providing one way to remove arsenate contamination, and which may also be of benefit for other heavy metals.
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Affiliation(s)
| | - Louise Horsfall
- Institute of Cell Biology, School of Biological Sciences, University of Edinburgh , Edinburgh , UK
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A Post-Genomic View of the Ecophysiology, Catabolism and Biotechnological Relevance of Sulphate-Reducing Prokaryotes. Adv Microb Physiol 2015. [PMID: 26210106 DOI: 10.1016/bs.ampbs.2015.05.002] [Citation(s) in RCA: 162] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
Dissimilatory sulphate reduction is the unifying and defining trait of sulphate-reducing prokaryotes (SRP). In their predominant habitats, sulphate-rich marine sediments, SRP have long been recognized to be major players in the carbon and sulphur cycles. Other, more recently appreciated, ecophysiological roles include activity in the deep biosphere, symbiotic relations, syntrophic associations, human microbiome/health and long-distance electron transfer. SRP include a high diversity of organisms, with large nutritional versatility and broad metabolic capacities, including anaerobic degradation of aromatic compounds and hydrocarbons. Elucidation of novel catabolic capacities as well as progress in the understanding of metabolic and regulatory networks, energy metabolism, evolutionary processes and adaptation to changing environmental conditions has greatly benefited from genomics, functional OMICS approaches and advances in genetic accessibility and biochemical studies. Important biotechnological roles of SRP range from (i) wastewater and off gas treatment, (ii) bioremediation of metals and hydrocarbons and (iii) bioelectrochemistry, to undesired impacts such as (iv) souring in oil reservoirs and other environments, and (v) corrosion of iron and concrete. Here we review recent advances in our understanding of SRPs focusing mainly on works published after 2000. The wealth of publications in this period, covering many diverse areas, is a testimony to the large environmental, biogeochemical and technological relevance of these organisms and how much the field has progressed in these years, although many important questions and applications remain to be explored.
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