1
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Maestro‐Gaitán I, Granado‐Rodríguez S, Redondo‐Nieto M, Battaglia A, Poza‐Viejo L, Matías J, Bolaños L, Reguera M. Unveiling changes in rhizosphere-associated bacteria linked to the genotype and water stress in quinoa. Microb Biotechnol 2023; 16:2326-2344. [PMID: 37712602 PMCID: PMC10686115 DOI: 10.1111/1751-7915.14337] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Revised: 08/30/2023] [Accepted: 09/01/2023] [Indexed: 09/16/2023] Open
Abstract
Drought is among the main abiotic factors causing agronomical losses worldwide. To minimize its impact, several strategies have been proposed, including the use of plant growth-promoting bacteria (PGPBs), as they have demonstrated roles in counteracting abiotic stress. This aspect has been little explored in emergent crops such as quinoa, which has the potential to contribute to reducing food insecurity. Thus, here we hypothesize that the genotype, water environment and the type of inoculant are determining factors in shaping quinoa rhizosphere bacterial communities, affecting plant performance. To address this, two different quinoa cultivars (with contrasting water stress tolerance), two water conditions (optimal and limiting water conditions) and different soil infusions were used to define the relevance of these factors. Different bacterial families that vary among genotypes and water conditions were identified. Certain families were enriched under water stress conditions, such as the Nocardioidaceae, highly present in the water-sensitive cultivar F15, or the Pseudomonadaceae, Burkholderiaceae and Sphingomonadaceae, more abundant in the tolerant cultivar F16, which also showed larger total polyphenol content. These changes demonstrate that the genotype and environment highly contribute to shaping the root-inhabiting bacteria in quinoa, and they suggest that this plant species is a great source of PGPBs for utilization under water-liming conditions.
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Affiliation(s)
| | | | | | | | - Laura Poza‐Viejo
- Departamento de BiologíaUniversidad Autónoma de MadridMadridSpain
| | - Javier Matías
- Agrarian Research Institute “La Orden‐Valdesequera” of Extremadura (CICYTEX)BadajozSpain
| | - Luis Bolaños
- Departamento de BiologíaUniversidad Autónoma de MadridMadridSpain
| | - Maria Reguera
- Departamento de BiologíaUniversidad Autónoma de MadridMadridSpain
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2
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Munns R, Millar AH. Seven plant capacities to adapt to abiotic stress. JOURNAL OF EXPERIMENTAL BOTANY 2023; 74:4308-4323. [PMID: 37220077 PMCID: PMC10433935 DOI: 10.1093/jxb/erad179] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2022] [Accepted: 05/11/2023] [Indexed: 05/25/2023]
Abstract
Abiotic stresses such as drought and heat continue to impact crop production in a warming world. This review distinguishes seven inherent capacities that enable plants to respond to abiotic stresses and continue growing, although at a reduced rate, to achieve a productive yield. These are the capacities to selectively take up essential resources, store them and supply them to different plant parts, generate the energy required for cellular functions, conduct repairs to maintain plant tissues, communicate between plant parts, manage existing structural assets in the face of changed circumstances, and shape-shift through development to be efficient in different environments. By illustration, we show how all seven plant capacities are important for reproductive success of major crop species during drought, salinity, temperature extremes, flooding, and nutrient stress. Confusion about the term 'oxidative stress' is explained. This allows us to focus on the strategies that enhance plant adaptation by identifying key responses that can be targets for plant breeding.
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Affiliation(s)
- Rana Munns
- Australian Research Council Centre of Excellence in Plant Energy Biology, School of Molecular Sciences, University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
| | - A Harvey Millar
- Australian Research Council Centre of Excellence in Plant Energy Biology, School of Molecular Sciences, University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
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3
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Mockevičiūtė R, Jurkonienė S, Šveikauskas V, Zareyan M, Jankovska-Bortkevič E, Jankauskienė J, Kozeko L, Gavelienė V. Probiotics, Proline and Calcium Induced Protective Responses of Triticum aestivum under Drought Stress. PLANTS (BASEL, SWITZERLAND) 2023; 12:1301. [PMID: 36986989 PMCID: PMC10051984 DOI: 10.3390/plants12061301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/02/2022] [Revised: 03/02/2023] [Accepted: 03/08/2023] [Indexed: 06/19/2023]
Abstract
In order to increase plants tolerance to drought, the idea of treating them with stress-protecting compounds exogenously is being considered. In this study, we aimed to evaluate and compare the impact of exogenous calcium, proline, and plant probiotics on the response of winter wheat to drought stress. The research was carried out under controlled conditions, simulating a prolonged drought from 6 to 18 days. Seedlings were treated with ProbioHumus 2 µL g-1 for seed priming, 1 mL 100 mL-1 for seedling spraying, and proline 1 mM according to the scheme. 70 g m-2 CaCO3 was added to the soil. All tested compounds improved the prolonged drought tolerance of winter wheat. ProbioHumus, ProbioHumus + Ca had the greatest effect on maintaining the relative leaf water content (RWC) and in maintaining growth parameters close to those of irrigated plants. They delayed and reduced the stimulation of ethylene emission in drought-stressed leaves. Seedlings treated with ProbioHumus and ProbioHumus + Ca had a significantly lower degree of membrane damage induced by ROS. Molecular studies of drought-responsive genes revealed substantially lower expression of Ca and Probiotics + Ca treated plants vs. drought control. The results of this study showed that the use of probiotics in combination with Ca can activate defense reactions that can compensate for the adverse effects of drought stress.
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Affiliation(s)
- Rima Mockevičiūtė
- Laboratory of Plant Physiology, Nature Research Centre, Akademijos Str. 2, 08412 Vilnius, Lithuania
| | - Sigita Jurkonienė
- Laboratory of Plant Physiology, Nature Research Centre, Akademijos Str. 2, 08412 Vilnius, Lithuania
| | - Vaidevutis Šveikauskas
- Laboratory of Plant Physiology, Nature Research Centre, Akademijos Str. 2, 08412 Vilnius, Lithuania
| | - Mariam Zareyan
- Laboratory of Plant Physiology, Nature Research Centre, Akademijos Str. 2, 08412 Vilnius, Lithuania
| | | | - Jurga Jankauskienė
- Laboratory of Plant Physiology, Nature Research Centre, Akademijos Str. 2, 08412 Vilnius, Lithuania
| | - Liudmyla Kozeko
- Department of Cell Biology and Anatomy, M.G. Kholodny Institute of Botany of the National Academy of Sciences of Ukraine, Tereshchenkivska Str. 2, 01601 Kyiv, Ukraine
| | - Virgilija Gavelienė
- Laboratory of Plant Physiology, Nature Research Centre, Akademijos Str. 2, 08412 Vilnius, Lithuania
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4
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Tissue Culture—A Sustainable Approach to Explore Plant Stresses. Life (Basel) 2023; 13:life13030780. [PMID: 36983935 PMCID: PMC10057563 DOI: 10.3390/life13030780] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2023] [Revised: 03/08/2023] [Accepted: 03/10/2023] [Indexed: 03/15/2023] Open
Abstract
Plants are constantly faced with biotic or abiotic stress, which affects their growth and development. Yield reduction due to biotic and abiotic stresses on economically important crop species causes substantial economic loss at a global level. Breeding for stress tolerance to create elite and superior genotypes has been a common practice for many decades, and plant tissue culture can be an efficient and cost-effective method. Tissue culture is a valuable tool to develop stress tolerance, screen stress tolerance, and elucidate physiological and biochemical changes during stress. In vitro selection carried out under controlled environment conditions in confined spaces is highly effective and cheaper to maintain. This review emphasizes the relevance of plant tissue culture for screening major abiotic stresses, drought, and salinity, and the development of disease resistance. Further emphasis is given to screening metal hyperaccumulators and transgenic technological applications for stress tolerance.
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5
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Haris M, Hussain T, Mohamed HI, Khan A, Ansari MS, Tauseef A, Khan AA, Akhtar N. Nanotechnology - A new frontier of nano-farming in agricultural and food production and its development. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 857:159639. [PMID: 36283520 DOI: 10.1016/j.scitotenv.2022.159639] [Citation(s) in RCA: 26] [Impact Index Per Article: 26.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2022] [Revised: 10/10/2022] [Accepted: 10/18/2022] [Indexed: 05/27/2023]
Abstract
The potential of nanotechnology for the development of sustainable agriculture has been promising. The initiatives to meet the rising food needs of the rapidly growing world population are mainly powered by sustainable agriculture. Nanoparticles are used in agriculture due to their distinct physicochemical characteristics. The interaction of nanomaterials with soil components is strongly determined in terms of soil quality and plant growth. Numerous research has been carried out to investigate how nanoparticles affect the growth and development of plants. Nanotechnology has been applied to improve the quality and reduce post-harvest loss of agricultural products by extending their shelf life, particularly for fruits and vegetables. This review assesses the latest literature on nanotechnology, which is used as a nano-biofertilizer as seen in the agricultural field for high productivity and better growth of plants, an important source of balanced nutrition for the crop, seed germination, and quality enrichment. Additionally, post-harvest food processing and packaging can benefit greatly from the use of nanotechnology to cut down on food waste and contamination. It also critically discusses the mechanisms involved in nanoparticle absorption and translocation within the plants and the synthesis of green nanoparticles.
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Affiliation(s)
- Mohammad Haris
- Plant Pathology and Nematology Section, Department of Botany, Aligarh Muslim University, Aligarh 202002, India
| | - Touseef Hussain
- Plant Pathology and Nematology Section, Department of Botany, Aligarh Muslim University, Aligarh 202002, India; Division. of Plant Pathology, ICAR-Indian Agricultural Research Institute, New Delhi 110012, India.
| | - Heba I Mohamed
- Biological and Geological Sciences Department, Faculty of Education, Ain Shams University, Cairo, Egypt.
| | - Amir Khan
- Plant Pathology and Nematology Section, Department of Botany, Aligarh Muslim University, Aligarh 202002, India
| | - Moh Sajid Ansari
- Plant Pathology and Nematology Section, Department of Botany, Aligarh Muslim University, Aligarh 202002, India
| | - Atirah Tauseef
- Plant Pathology and Nematology Section, Department of Botany, Aligarh Muslim University, Aligarh 202002, India
| | - Abrar Ahmad Khan
- Plant Pathology and Nematology Section, Department of Botany, Aligarh Muslim University, Aligarh 202002, India
| | - Naseem Akhtar
- Department of Pharmaceutics, College of Dentistry and Pharmacy, Buraydah Private Colleges, Buraydah, Qassim 51418, Saudi Arabia
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6
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Verslues PE, Bailey-Serres J, Brodersen C, Buckley TN, Conti L, Christmann A, Dinneny JR, Grill E, Hayes S, Heckman RW, Hsu PK, Juenger TE, Mas P, Munnik T, Nelissen H, Sack L, Schroeder JI, Testerink C, Tyerman SD, Umezawa T, Wigge PA. Burning questions for a warming and changing world: 15 unknowns in plant abiotic stress. THE PLANT CELL 2023; 35:67-108. [PMID: 36018271 PMCID: PMC9806664 DOI: 10.1093/plcell/koac263] [Citation(s) in RCA: 29] [Impact Index Per Article: 29.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Accepted: 08/21/2022] [Indexed: 05/08/2023]
Abstract
We present unresolved questions in plant abiotic stress biology as posed by 15 research groups with expertise spanning eco-physiology to cell and molecular biology. Common themes of these questions include the need to better understand how plants detect water availability, temperature, salinity, and rising carbon dioxide (CO2) levels; how environmental signals interface with endogenous signaling and development (e.g. circadian clock and flowering time); and how this integrated signaling controls downstream responses (e.g. stomatal regulation, proline metabolism, and growth versus defense balance). The plasma membrane comes up frequently as a site of key signaling and transport events (e.g. mechanosensing and lipid-derived signaling, aquaporins). Adaptation to water extremes and rising CO2 affects hydraulic architecture and transpiration, as well as root and shoot growth and morphology, in ways not fully understood. Environmental adaptation involves tradeoffs that limit ecological distribution and crop resilience in the face of changing and increasingly unpredictable environments. Exploration of plant diversity within and among species can help us know which of these tradeoffs represent fundamental limits and which ones can be circumvented by bringing new trait combinations together. Better defining what constitutes beneficial stress resistance in different contexts and making connections between genes and phenotypes, and between laboratory and field observations, are overarching challenges.
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Affiliation(s)
| | - Julia Bailey-Serres
- Department of Botany and Plant Sciences, Center for Plant Cell Biology, University of California, Riverside, California 92521, USA
| | - Craig Brodersen
- School of the Environment, Yale University, New Haven, Connecticut 06511, USA
| | - Thomas N Buckley
- Department of Plant Sciences, University of California, Davis, California 95616, USA
| | - Lucio Conti
- Department of Biosciences, University of Milan, Milan 20133, Italy
| | - Alexander Christmann
- School of Life Sciences, Technical University Munich, Freising-Weihenstephan 85354, Germany
| | - José R Dinneny
- Department of Biology, Stanford University, Stanford, California 94305, USA
| | - Erwin Grill
- School of Life Sciences, Technical University Munich, Freising-Weihenstephan 85354, Germany
| | - Scott Hayes
- Laboratory of Plant Physiology, Plant Sciences Group, Wageningen University and Research, Wageningen 6708 PB, The Netherlands
| | - Robert W Heckman
- Department of Integrative Biology, University of Texas at Austin, Austin, Texas 78712, USA
| | - Po-Kai Hsu
- Department of Cell and Developmental Biology, School of Biological Sciences, University of California San Diego, La Jolla, California 92093, USA
| | - Thomas E Juenger
- Department of Integrative Biology, University of Texas at Austin, Austin, Texas 78712, USA
| | - Paloma Mas
- Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Barcelona 08193, Spain
- Consejo Superior de Investigaciones Científicas (CSIC), Barcelona 08028, Spain
| | - Teun Munnik
- Department of Plant Cell Biology, Green Life Sciences Cluster, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam NL-1098XH, The Netherlands
| | - Hilde Nelissen
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium
- VIB Center for Plant Systems Biology, Ghent 9052, Belgium
| | - Lawren Sack
- Department of Ecology and Evolutionary Biology, Institute of the Environment and Sustainability, University of California, Los Angeles, California 90095, USA
| | - Julian I Schroeder
- Department of Cell and Developmental Biology, School of Biological Sciences, University of California San Diego, La Jolla, California 92093, USA
| | - Christa Testerink
- Laboratory of Plant Physiology, Plant Sciences Group, Wageningen University and Research, Wageningen 6708 PB, The Netherlands
| | - Stephen D Tyerman
- ARC Center Excellence, Plant Energy Biology, School of Agriculture Food and Wine, University of Adelaide, Adelaide, South Australia 5064, Australia
| | - Taishi Umezawa
- Faculty of Agriculture, Tokyo University of Agriculture and Technology, Tokyo 6708 PB, Japan
| | - Philip A Wigge
- Leibniz-Institut für Gemüse- und Zierpflanzenbau, Großbeeren 14979, Germany
- Institute of Biochemistry and Biology, University of Potsdam, Potsdam 14476, Germany
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7
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Juenger TE, Verslues PE. Time for a drought experiment: Do you know your plants' water status? THE PLANT CELL 2023; 35:10-23. [PMID: 36346190 PMCID: PMC9806650 DOI: 10.1093/plcell/koac324] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/24/2022] [Accepted: 11/03/2022] [Indexed: 06/16/2023]
Abstract
Drought stress is an increasing concern because of climate change and increasing demands on water for agriculture. There are still many unknowns about how plants sense and respond to water limitation, including which genes and cellular mechanisms are impactful for ecology and crop improvement in drought-prone environments. A better understanding of plant drought resistance will require integration of several research disciplines. A common set of parameters to describe plant water status and quantify drought severity can enhance data interpretation and research integration across the research disciplines involved in understanding drought resistance and would be especially useful in integrating the flood of genomic data being generated in drought studies. Water potential (ψw) is a physical measure of the free energy status of water that, along with related physiological measurements, allows unambiguous description of plant water status that can apply across various soil types and environmental conditions. ψw and related physiological parameters can be measured with relatively modest investment in equipment and effort. Thus, we propose that increased use of ψw as a fundamental descriptor of plant water status can enhance the insight gained from many drought-related experiments and facilitate data integration and sharing across laboratories and research disciplines.
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8
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Cooper M, Messina CD. Breeding crops for drought-affected environments and improved climate resilience. THE PLANT CELL 2023; 35:162-186. [PMID: 36370076 PMCID: PMC9806606 DOI: 10.1093/plcell/koac321] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Accepted: 11/01/2022] [Indexed: 05/12/2023]
Abstract
Breeding climate-resilient crops with improved levels of abiotic and biotic stress resistance as a response to climate change presents both opportunities and challenges. Applying the framework of the "breeder's equation," which is used to predict the response to selection for a breeding program cycle, we review methodologies and strategies that have been used to successfully breed crops with improved levels of drought resistance, where the target population of environments (TPEs) is a spatially and temporally heterogeneous mixture of drought-affected and favorable (water-sufficient) environments. Long-term improvement of temperate maize for the US corn belt is used as a case study and compared with progress for other crops and geographies. Integration of trait information across scales, from genomes to ecosystems, is needed to accurately predict yield outcomes for genotypes within the current and future TPEs. This will require transdisciplinary teams to explore, identify, and exploit novel opportunities to accelerate breeding program outcomes; both improved germplasm resources and improved products (cultivars, hybrids, clones, and populations) that outperform and replace the products in use by farmers, in combination with modified agronomic management strategies suited to their local environments.
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Affiliation(s)
| | - Carlos D Messina
- Horticultural Sciences Department, University of Florida, Gainesville, Florida 32611, USA
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9
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Bowerman AF, Byrt CS, Roy SJ, Whitney SM, Mortimer JC, Ankeny RA, Gilliham M, Zhang D, Millar AA, Rebetzke GJ, Pogson BJ. Potential abiotic stress targets for modern genetic manipulation. THE PLANT CELL 2023; 35:139-161. [PMID: 36377770 PMCID: PMC9806601 DOI: 10.1093/plcell/koac327] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2022] [Accepted: 11/03/2022] [Indexed: 05/06/2023]
Abstract
Research into crop yield and resilience has underpinned global food security, evident in yields tripling in the past 5 decades. The challenges that global agriculture now faces are not just to feed 10+ billion people within a generation, but to do so under a harsher, more variable, and less predictable climate, and in many cases with less water, more expensive inputs, and declining soil quality. The challenges of climate change are not simply to breed for a "hotter drier climate," but to enable resilience to floods and droughts and frosts and heat waves, possibly even within a single growing season. How well we prepare for the coming decades of climate variability will depend on our ability to modify current practices, innovate with novel breeding methods, and communicate and work with farming communities to ensure viability and profitability. Here we define how future climates will impact farming systems and growing seasons, thereby identifying the traits and practices needed and including exemplars being implemented and developed. Critically, this review will also consider societal perspectives and public engagement about emerging technologies for climate resilience, with participatory approaches presented as the best approach.
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Affiliation(s)
- Andrew F Bowerman
- ARC Training Centre for Accelerated Future Crops Development, The Australian National University, Canberra, Australian Capital Territory, Australia
| | - Caitlin S Byrt
- ARC Training Centre for Accelerated Future Crops Development, The Australian National University, Canberra, Australian Capital Territory, Australia
| | - Stuart John Roy
- ARC Training Centre for Accelerated Future Crops Development, University of Adelaide, South Australia, Australia
- School of Agriculture, Food and Wine & Waite Research Institute, University of Adelaide, Glen Osmond, South Australia, Australia
| | - Spencer M Whitney
- ARC Training Centre for Accelerated Future Crops Development, The Australian National University, Canberra, Australian Capital Territory, Australia
| | - Jenny C Mortimer
- ARC Training Centre for Accelerated Future Crops Development, University of Adelaide, South Australia, Australia
- School of Agriculture, Food and Wine & Waite Research Institute, University of Adelaide, Glen Osmond, South Australia, Australia
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - Rachel A Ankeny
- ARC Training Centre for Accelerated Future Crops Development, University of Adelaide, South Australia, Australia
- School of Humanities, University of Adelaide, North Terrace, South Australia, Australia
| | - Matthew Gilliham
- ARC Training Centre for Accelerated Future Crops Development, University of Adelaide, South Australia, Australia
- School of Agriculture, Food and Wine & Waite Research Institute, University of Adelaide, Glen Osmond, South Australia, Australia
| | - Dabing Zhang
- ARC Training Centre for Accelerated Future Crops Development, University of Adelaide, South Australia, Australia
- School of Agriculture, Food and Wine & Waite Research Institute, University of Adelaide, Glen Osmond, South Australia, Australia
| | - Anthony A Millar
- ARC Training Centre for Accelerated Future Crops Development, The Australian National University, Canberra, Australian Capital Territory, Australia
| | - Greg J Rebetzke
- CSIRO Agriculture & Food, Canberra, Australian Capital Territory, Australia
| | - Barry J Pogson
- ARC Training Centre for Accelerated Future Crops Development, The Australian National University, Canberra, Australian Capital Territory, Australia
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10
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Lorenzo CD, Debray K, Herwegh D, Develtere W, Impens L, Schaumont D, Vandeputte W, Aesaert S, Coussens G, De Boe Y, Demuynck K, Van Hautegem T, Pauwels L, Jacobs TB, Ruttink T, Nelissen H, Inzé D. BREEDIT: a multiplex genome editing strategy to improve complex quantitative traits in maize. THE PLANT CELL 2023; 35:218-238. [PMID: 36066192 PMCID: PMC9806654 DOI: 10.1093/plcell/koac243] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/02/2022] [Accepted: 07/30/2022] [Indexed: 05/04/2023]
Abstract
Ensuring food security for an ever-growing global population while adapting to climate change is the main challenge for agriculture in the 21st century. Although new technologies are being applied to tackle this problem, we are approaching a plateau in crop improvement using conventional breeding. Recent advances in CRISPR/Cas9-mediated gene engineering have paved the way to accelerate plant breeding to meet this increasing demand. However, many traits are governed by multiple small-effect genes operating in complex interactive networks. Here, we present the gene discovery pipeline BREEDIT, which combines multiplex genome editing of whole gene families with crossing schemes to improve complex traits such as yield and drought tolerance. We induced gene knockouts in 48 growth-related genes into maize (Zea mays) using CRISPR/Cas9 and generated a collection of over 1,000 gene-edited plants. The edited populations displayed (on average) 5%-10% increases in leaf length and up to 20% increases in leaf width compared with the controls. For each gene family, edits in subsets of genes could be associated with enhanced traits, allowing us to reduce the gene space to be considered for trait improvement. BREEDIT could be rapidly applied to generate a diverse collection of mutants to identify promising gene modifications for later use in breeding programs.
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Affiliation(s)
| | | | - Denia Herwegh
- Center for Plant Systems Biology, VIB, B-9052 Gent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Gent, Belgium
| | - Ward Develtere
- Center for Plant Systems Biology, VIB, B-9052 Gent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Gent, Belgium
| | - Lennert Impens
- Center for Plant Systems Biology, VIB, B-9052 Gent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Gent, Belgium
| | - Dries Schaumont
- Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), B-9820 Merelbeke, Belgium
| | - Wout Vandeputte
- Center for Plant Systems Biology, VIB, B-9052 Gent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Gent, Belgium
| | - Stijn Aesaert
- Center for Plant Systems Biology, VIB, B-9052 Gent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Gent, Belgium
| | - Griet Coussens
- Center for Plant Systems Biology, VIB, B-9052 Gent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Gent, Belgium
| | - Yara De Boe
- Center for Plant Systems Biology, VIB, B-9052 Gent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Gent, Belgium
| | - Kirin Demuynck
- Center for Plant Systems Biology, VIB, B-9052 Gent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Gent, Belgium
| | - Tom Van Hautegem
- Center for Plant Systems Biology, VIB, B-9052 Gent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Gent, Belgium
| | - Laurens Pauwels
- Center for Plant Systems Biology, VIB, B-9052 Gent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Gent, Belgium
| | - Thomas B Jacobs
- Center for Plant Systems Biology, VIB, B-9052 Gent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Gent, Belgium
| | - Tom Ruttink
- Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), B-9820 Merelbeke, Belgium
| | - Hilde Nelissen
- Center for Plant Systems Biology, VIB, B-9052 Gent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Gent, Belgium
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11
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Incorporating male sterility increases hybrid maize yield in low input African farming systems. Commun Biol 2022; 5:729. [PMID: 35869279 PMCID: PMC9307751 DOI: 10.1038/s42003-022-03680-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2021] [Accepted: 07/07/2022] [Indexed: 11/22/2022] Open
Abstract
Maize is a staple crop in sub-Saharan Africa, but yields remain sub-optimal. Improved breeding and seed systems are vital to increase productivity. We describe a hybrid seed production technology that will benefit seed companies and farmers. This technology improves efficiency and integrity of seed production by removing the need for detasseling. The resulting hybrids segregate 1:1 for pollen production, conserving resources for grain production and conferring a 200 kg ha−1 benefit across a range of yield levels. This represents a 10% increase for farmers operating at national average yield levels in sub-Saharan Africa. The yield benefit provided by fifty-percent non-pollen producing hybrids is the first example of a single gene technology in maize conferring a yield increase of this magnitude under low-input smallholder farmer conditions and across an array of hybrid backgrounds. Benefits to seed companies will provide incentives to improve smallholder farmer access to higher quality seed. Demonstrated farmer preference for these hybrids will help drive their adoption. Seed hybridization technology improves maize yield in African smallholder farming conditions.
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12
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Curci PL, Zhang J, Mähler N, Seyfferth C, Mannapperuma C, Diels T, Van Hautegem T, Jonsen D, Street N, Hvidsten TR, Hertzberg M, Nilsson O, Inzé D, Nelissen H, Vandepoele K. Identification of growth regulators using cross-species network analysis in plants. PLANT PHYSIOLOGY 2022; 190:2350-2365. [PMID: 35984294 PMCID: PMC9706488 DOI: 10.1093/plphys/kiac374] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2022] [Accepted: 07/05/2022] [Indexed: 05/11/2023]
Abstract
With the need to increase plant productivity, one of the challenges plant scientists are facing is to identify genes that play a role in beneficial plant traits. Moreover, even when such genes are found, it is generally not trivial to transfer this knowledge about gene function across species to identify functional orthologs. Here, we focused on the leaf to study plant growth. First, we built leaf growth transcriptional networks in Arabidopsis (Arabidopsis thaliana), maize (Zea mays), and aspen (Populus tremula). Next, known growth regulators, here defined as genes that when mutated or ectopically expressed alter plant growth, together with cross-species conserved networks, were used as guides to predict novel Arabidopsis growth regulators. Using an in-depth literature screening, 34 out of 100 top predicted growth regulators were confirmed to affect leaf phenotype when mutated or overexpressed and thus represent novel potential growth regulators. Globally, these growth regulators were involved in cell cycle, plant defense responses, gibberellin, auxin, and brassinosteroid signaling. Phenotypic characterization of loss-of-function lines confirmed two predicted growth regulators to be involved in leaf growth (NPF6.4 and LATE MERISTEM IDENTITY2). In conclusion, the presented network approach offers an integrative cross-species strategy to identify genes involved in plant growth and development.
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Affiliation(s)
- Pasquale Luca Curci
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Ghent, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
- Institute of Biosciences and Bioresources, National Research Council (CNR), Via Amendola 165/A, 70126 Bari, Italy
| | - Jie Zhang
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Ghent, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
| | - Niklas Mähler
- Department of Plant Physiology, Umea Plant Science Centre (UPSC), Umeå University, 90187 Umeå, Sweden
| | - Carolin Seyfferth
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Ghent, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
- Department of Plant Physiology, Umea Plant Science Centre (UPSC), Umeå University, 90187 Umeå, Sweden
| | - Chanaka Mannapperuma
- Department of Plant Physiology, Umea Plant Science Centre (UPSC), Umeå University, 90187 Umeå, Sweden
| | - Tim Diels
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Ghent, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
| | - Tom Van Hautegem
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Ghent, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
| | - David Jonsen
- SweTree Technologies AB, Skogsmarksgränd 7, SE-907 36 Umeå, Sweden
| | - Nathaniel Street
- Department of Plant Physiology, Umea Plant Science Centre (UPSC), Umeå University, 90187 Umeå, Sweden
| | - Torgeir R Hvidsten
- Department of Plant Physiology, Umea Plant Science Centre (UPSC), Umeå University, 90187 Umeå, Sweden
- Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, 1432 Ås, Norway
| | - Magnus Hertzberg
- SweTree Technologies AB, Skogsmarksgränd 7, SE-907 36 Umeå, Sweden
| | - Ove Nilsson
- Department of Forest Genetics and Plant Physiology, Umea Plant Science Centre (UPSC), Swedish University of Agricultural Sciences, 90183 Umeå, Sweden
| | - Dirk Inzé
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Ghent, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
| | - Hilde Nelissen
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Ghent, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
| | - Klaas Vandepoele
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Ghent, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
- Bioinformatics Institute Ghent, Ghent University, Technologiepark 71, 9052 Ghent, Belgium
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13
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Tian J, Ke XH, Yuan Y, Yang WX, Tang XQ, Pei LJ, Fan J, Zhuo Q, Yang XG, Liu JF, Fan BL. Subchronic Toxicity of GmDREB3 Gene Modified Wheat in the Third Generation Wistar Rats. PLANTS 2022; 11:plants11141823. [PMID: 35890457 PMCID: PMC9323929 DOI: 10.3390/plants11141823] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/10/2022] [Revised: 06/30/2022] [Accepted: 07/05/2022] [Indexed: 11/16/2022]
Abstract
The aim of the current study was to evaluate the subchronic toxicity of GmDREB3 gene modified wheat in the third generation rats. SPF Wistar rats were fed with transgenic wheat diet (Gm), parental wheat diet (Jimai22) and AIN-93 rodent diet (Control), respectively, for two generations, to produce the third generation rats which were used for this study. The selected fresh weaned offspring rats (20/sex/group) were given the same diet as their parents for 13 weeks. No toxicity-related changes were observed in rats fed with Gm diet in the following respects: clinical signs, body weights, body weight gains, food consumption, food utilization rate, urinalysis, hematology, serum biochemistry and histopathology. The results from the present study demonstrated that 13 weeks consumption of Gm wheat did not cause any adverse effects in the third generation rats when compared with the corresponding Jimai22 wheat.
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Affiliation(s)
- Jie Tian
- Hubei Provincial Key Laboratory for Applied Toxicology, Hubei Provincial Center for Disease Control and Prevention, Wuhan 430079, China; (J.T.); (X.-H.K.); (Y.Y.); (W.-X.Y.); (X.-Q.T.); (L.-J.P.); (J.F.); (J.-F.L.)
| | - Xiang-Hong Ke
- Hubei Provincial Key Laboratory for Applied Toxicology, Hubei Provincial Center for Disease Control and Prevention, Wuhan 430079, China; (J.T.); (X.-H.K.); (Y.Y.); (W.-X.Y.); (X.-Q.T.); (L.-J.P.); (J.F.); (J.-F.L.)
| | - Yuan Yuan
- Hubei Provincial Key Laboratory for Applied Toxicology, Hubei Provincial Center for Disease Control and Prevention, Wuhan 430079, China; (J.T.); (X.-H.K.); (Y.Y.); (W.-X.Y.); (X.-Q.T.); (L.-J.P.); (J.F.); (J.-F.L.)
| | - Wen-Xiang Yang
- Hubei Provincial Key Laboratory for Applied Toxicology, Hubei Provincial Center for Disease Control and Prevention, Wuhan 430079, China; (J.T.); (X.-H.K.); (Y.Y.); (W.-X.Y.); (X.-Q.T.); (L.-J.P.); (J.F.); (J.-F.L.)
| | - Xiao-Qiao Tang
- Hubei Provincial Key Laboratory for Applied Toxicology, Hubei Provincial Center for Disease Control and Prevention, Wuhan 430079, China; (J.T.); (X.-H.K.); (Y.Y.); (W.-X.Y.); (X.-Q.T.); (L.-J.P.); (J.F.); (J.-F.L.)
| | - Lan-Jie Pei
- Hubei Provincial Key Laboratory for Applied Toxicology, Hubei Provincial Center for Disease Control and Prevention, Wuhan 430079, China; (J.T.); (X.-H.K.); (Y.Y.); (W.-X.Y.); (X.-Q.T.); (L.-J.P.); (J.F.); (J.-F.L.)
| | - Jun Fan
- Hubei Provincial Key Laboratory for Applied Toxicology, Hubei Provincial Center for Disease Control and Prevention, Wuhan 430079, China; (J.T.); (X.-H.K.); (Y.Y.); (W.-X.Y.); (X.-Q.T.); (L.-J.P.); (J.F.); (J.-F.L.)
| | - Qin Zhuo
- Key Laboratory of Trace Element Nutrition of National Health Commission, Chinese Center for Disease Control and Prevention, Beijing 100050, China; (Q.Z.); (X.-G.Y.)
| | - Xiao-Guang Yang
- Key Laboratory of Trace Element Nutrition of National Health Commission, Chinese Center for Disease Control and Prevention, Beijing 100050, China; (Q.Z.); (X.-G.Y.)
| | - Jia-Fa Liu
- Hubei Provincial Key Laboratory for Applied Toxicology, Hubei Provincial Center for Disease Control and Prevention, Wuhan 430079, China; (J.T.); (X.-H.K.); (Y.Y.); (W.-X.Y.); (X.-Q.T.); (L.-J.P.); (J.F.); (J.-F.L.)
| | - Bo-Lin Fan
- Hubei Provincial Key Laboratory for Applied Toxicology, Hubei Provincial Center for Disease Control and Prevention, Wuhan 430079, China; (J.T.); (X.-H.K.); (Y.Y.); (W.-X.Y.); (X.-Q.T.); (L.-J.P.); (J.F.); (J.-F.L.)
- Correspondence:
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14
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Danilevicz MF, Gill M, Anderson R, Batley J, Bennamoun M, Bayer PE, Edwards D. Plant Genotype to Phenotype Prediction Using Machine Learning. Front Genet 2022; 13:822173. [PMID: 35664329 PMCID: PMC9159391 DOI: 10.3389/fgene.2022.822173] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2021] [Accepted: 03/07/2022] [Indexed: 12/13/2022] Open
Abstract
Genomic prediction tools support crop breeding based on statistical methods, such as the genomic best linear unbiased prediction (GBLUP). However, these tools are not designed to capture non-linear relationships within multi-dimensional datasets, or deal with high dimension datasets such as imagery collected by unmanned aerial vehicles. Machine learning (ML) algorithms have the potential to surpass the prediction accuracy of current tools used for genotype to phenotype prediction, due to their capacity to autonomously extract data features and represent their relationships at multiple levels of abstraction. This review addresses the challenges of applying statistical and machine learning methods for predicting phenotypic traits based on genetic markers, environment data, and imagery for crop breeding. We present the advantages and disadvantages of explainable model structures, discuss the potential of machine learning models for genotype to phenotype prediction in crop breeding, and the challenges, including the scarcity of high-quality datasets, inconsistent metadata annotation and the requirements of ML models.
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Affiliation(s)
- Monica F. Danilevicz
- School of Biological Sciences and Institute of Agriculture, University of Western Australia, Perth, WA, Australia
| | - Mitchell Gill
- School of Biological Sciences and Institute of Agriculture, University of Western Australia, Perth, WA, Australia
| | - Robyn Anderson
- School of Biological Sciences and Institute of Agriculture, University of Western Australia, Perth, WA, Australia
| | - Jacqueline Batley
- School of Biological Sciences and Institute of Agriculture, University of Western Australia, Perth, WA, Australia
| | - Mohammed Bennamoun
- School of Physics, Mathematics and Computing, University of Western Australia, Perth, WA, Australia
| | - Philipp E. Bayer
- School of Biological Sciences and Institute of Agriculture, University of Western Australia, Perth, WA, Australia
| | - David Edwards
- School of Biological Sciences and Institute of Agriculture, University of Western Australia, Perth, WA, Australia
- *Correspondence: David Edwards,
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15
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Abstract
Plant hormones are signalling compounds that regulate crucial aspects of growth, development and environmental stress responses. Abiotic stresses, such as drought, salinity, heat, cold and flooding, have profound effects on plant growth and survival. Adaptation and tolerance to such stresses require sophisticated sensing, signalling and stress response mechanisms. In this Review, we discuss recent advances in understanding how diverse plant hormones control abiotic stress responses in plants and highlight points of hormonal crosstalk during abiotic stress signalling. Control mechanisms and stress responses mediated by plant hormones including abscisic acid, auxin, brassinosteroids, cytokinins, ethylene and gibberellins are discussed. We discuss new insights into osmotic stress sensing and signalling mechanisms, hormonal control of gene regulation and plant development during stress, hormone-regulated submergence tolerance and stomatal movements. We further explore how innovative imaging approaches are providing insights into single-cell and tissue hormone dynamics. Understanding stress tolerance mechanisms opens new opportunities for agricultural applications.
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16
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Mao H, Jian C, Cheng X, Chen B, Mei F, Li F, Zhang Y, Li S, Du L, Li T, Hao C, Wang X, Zhang X, Kang Z. The wheat ABA receptor gene TaPYL1-1B contributes to drought tolerance and grain yield by increasing water-use efficiency. PLANT BIOTECHNOLOGY JOURNAL 2022; 20:846-861. [PMID: 34890091 PMCID: PMC9055818 DOI: 10.1111/pbi.13764] [Citation(s) in RCA: 43] [Impact Index Per Article: 21.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2020] [Revised: 11/28/2021] [Accepted: 12/03/2021] [Indexed: 05/14/2023]
Abstract
The role of abscisic acid (ABA) receptors, PYR1/PYL/RCAR (PYLs), is well established in ABA signalling and plant drought response, but limited research has explored the regulation of wheat PYLs in this process, especially the effects of their allelic variations on drought tolerance or grain yield. Here, we found that the overexpression of a TaABFs-regulated PYL gene, TaPYL1-1B, exhibited higher ABA sensitivity, photosynthetic capacity and water-use efficiency (WUE), all contributed to higher drought tolerance than that of wild-type plants. This heightened water-saving mechanism further increased grain yield and protected productivity during water deficit. Candidate gene association analysis revealed that a favourable allele TaPYL1-1BIn-442 , carrying an MYB recognition site insertion in the promoter, is targeted by TaMYB70 and confers enhanced expression of TaPYL1-1B in drought-tolerant genotypes. More importantly, an increase in frequency of the TaPYL1-1BIn-442 allele over decades among modern Chinese cultivars and its association with high thousand-kernel weight together demonstrated that it was artificially selected during wheat improvement efforts. Taken together, our findings illuminate the role of TaPYL1-1B plays in coordinating drought tolerance and grain yield. In particular, the allelic variant TaPYL1-1BIn-442 substantially contributes to enhanced drought tolerance while maintaining high yield, and thus represents a valuable genetic target for engineering drought-tolerant wheat germplasm.
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Affiliation(s)
- Hude Mao
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Plant ProtectionNorthwest A&F UniversityYanglingShaanxi712100China
| | - Chao Jian
- Key Laboratory of Crop Gene Resources and Germplasm EnhancementMinistry of AgricultureInstitute of Crop ScienceChinese Academy of Agricultural SciencesBeijing100081China
| | - Xinxiu Cheng
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Plant ProtectionNorthwest A&F UniversityYanglingShaanxi712100China
| | - Bin Chen
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Plant ProtectionNorthwest A&F UniversityYanglingShaanxi712100China
| | - Fangming Mei
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Plant ProtectionNorthwest A&F UniversityYanglingShaanxi712100China
| | - Fangfang Li
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Plant ProtectionNorthwest A&F UniversityYanglingShaanxi712100China
| | - Yifang Zhang
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Plant ProtectionNorthwest A&F UniversityYanglingShaanxi712100China
| | - Shumin Li
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Plant ProtectionNorthwest A&F UniversityYanglingShaanxi712100China
| | - Linying Du
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Life ScienceNorthwest A&F UniversityYanglingShaanxi712100China
| | - Tian Li
- Key Laboratory of Crop Gene Resources and Germplasm EnhancementMinistry of AgricultureInstitute of Crop ScienceChinese Academy of Agricultural SciencesBeijing100081China
| | - Chenyang Hao
- Key Laboratory of Crop Gene Resources and Germplasm EnhancementMinistry of AgricultureInstitute of Crop ScienceChinese Academy of Agricultural SciencesBeijing100081China
| | - Xiaojing Wang
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Life ScienceNorthwest A&F UniversityYanglingShaanxi712100China
| | - Xueyong Zhang
- Key Laboratory of Crop Gene Resources and Germplasm EnhancementMinistry of AgricultureInstitute of Crop ScienceChinese Academy of Agricultural SciencesBeijing100081China
| | - Zhensheng Kang
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Plant ProtectionNorthwest A&F UniversityYanglingShaanxi712100China
- Yangling Seed Industry Innovation CenterYanglingShaanxi712100China
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17
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Bandurska H. Drought Stress Responses: Coping Strategy and Resistance. PLANTS (BASEL, SWITZERLAND) 2022; 11:plants11070922. [PMID: 35406902 PMCID: PMC9002871 DOI: 10.3390/plants11070922] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Accepted: 03/28/2022] [Indexed: 05/10/2023]
Abstract
Plants' resistance to stress factors is a complex trait that is a result of changes at the molecular, metabolic, and physiological levels. The plant resistance strategy means the ability to survive, recover, and reproduce under adverse conditions. Harmful environmental factors affect the state of stress in plant tissues, which creates a signal triggering metabolic events responsible for resistance, including avoidance and/or tolerance mechanisms. Unfortunately, the term 'stress resistance' is often used in the literature interchangeably with 'stress tolerance'. This paper highlights the differences between the terms 'stress tolerance' and 'stress resistance', based on the results of experiments focused on plants' responses to drought. The ability to avoid or tolerate dehydration is crucial in the resistance to drought at cellular and tissue levels (biological resistance). However, it is not necessarily crucial in crop resistance to drought if we take into account agronomic criteria (agricultural resistance). For the plant user (farmer, grower), resistance to stress means not only the ability to cope with a stress factor, but also the achievement of a stable yield and good quality. Therefore, it is important to recognize both particular plant coping strategies (stress avoidance, stress tolerance) and their influence on the resistance, assessed using well-defined criteria.
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Affiliation(s)
- Hanna Bandurska
- Department of Plant Physiology, Poznan University of Life Sciences, Wołyńska 35, 60-637 Poznań, Poland
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18
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Hüdig M, Laibach N, Hein AC. Genome Editing in Crop Plant Research-Alignment of Expectations and Current Developments. PLANTS (BASEL, SWITZERLAND) 2022; 11:212. [PMID: 35050100 PMCID: PMC8778883 DOI: 10.3390/plants11020212] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Revised: 01/07/2022] [Accepted: 01/08/2022] [Indexed: 06/14/2023]
Abstract
The rapid development of genome editing and other new genomic techniques (NGT) has evoked manifold expectations on purposes of the application of these techniques to crop plants. In this study, we identify and align these expectations with current scientific development. We apply a semi-quantitative text analysis approach on political, economic, and scientific opinion papers to disentangle and extract expectations towards the application of NGT-based plants. Using the sustainable development goals (SDG) of the 2030 agenda as categories, we identify contributions to food security or adaptation to climatic changes as the most frequently mentioned expectations, accompanied by the notion of sustainable agriculture and food systems. We then link SDG with relevant plant traits and review existing research and commercial field trials for genome-edited crop plants. For a detailed analysis we pick as representative traits drought tolerance and resistance against fungal pathogens. Diverse genetic setscrews for both traits have been identified, modified, and tested under laboratory conditions, although there are only a few in the field. All in all, NGT-plants that can withstand more than one stressor or different environments are not documented in advanced development states. We further conclude that developing new plants with modified traits will not be sufficient to reach food security or adaption to climatic changes in a short time frame. Further scientific development of sustainable agricultural systems will need to play an important role to tackle SDG challenges, as well.
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Affiliation(s)
- Meike Hüdig
- Molecular Plant Physiology Division, Institute of Molecular Physiology and Biotechnology of Plants, University of Bonn, Kirschallee 1, 53115 Bonn, Germany
| | - Natalie Laibach
- Centre for Research in Agricultural Genomics (CRAG), Edifici CRAG-Campus UAB, 08193 Cerdanyola del Vallès, Spain
| | - Anke-Christiane Hein
- Federal Agency for Nature Conservation, Assessment of Genetically Modified Organisms, Konstantinstraße 110, 53179 Bonn, Germany
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19
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Kerchev PI, Van Breusegem F. Improving oxidative stress resilience in plants. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022; 109:359-372. [PMID: 34519111 DOI: 10.1111/tpj.15493] [Citation(s) in RCA: 41] [Impact Index Per Article: 20.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2021] [Revised: 09/02/2021] [Accepted: 09/08/2021] [Indexed: 05/22/2023]
Abstract
Originally conceived as harmful metabolic byproducts, reactive oxygen species (ROS) are now recognized as an integral part of numerous cellular programs. Thanks to their diverse physicochemical properties, compartmentalized production, and tight control exerted by the antioxidant machinery they activate signaling pathways that govern plant growth, development, and defense. Excessive ROS levels are often driven by adverse changes in environmental conditions, ultimately causing oxidative stress. The associated negative impact on cellular constituents have been a major focus of decade-long research efforts to improve the oxidative stress resilience by boosting the antioxidant machinery in model and crop species. We highlight the role of enzymatic and non-enzymatic antioxidants as integral factors of multiple signaling cascades beyond their mere function to prevent oxidative damage under adverse abiotic stress conditions.
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Affiliation(s)
- Pavel I Kerchev
- Phytophthora Research Centre, Department of Molecular Biology and Radiobiology, Faculty of AgriSciences, Mendel University in Brno, 61300, Brno, Czech Republic
| | - Frank Van Breusegem
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052, Gent, Belgium
- Center for Plant Systems Biology, VIB, 9052, Gent, Belgium
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20
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dos Santos LBPR, Oliveira-Santos N, Fernandes JV, Jaimes-Martinez JC, De Souza JT, Cruz-Magalhães V, Loguercio LL. Tolerance to and Alleviation of Abiotic Stresses in Plants Mediated by Trichoderma spp. Fungal Biol 2022. [DOI: 10.1007/978-3-030-91650-3_12] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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21
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Yassitepe JEDCT, da Silva VCH, Hernandes-Lopes J, Dante RA, Gerhardt IR, Fernandes FR, da Silva PA, Vieira LR, Bonatti V, Arruda P. Maize Transformation: From Plant Material to the Release of Genetically Modified and Edited Varieties. FRONTIERS IN PLANT SCIENCE 2021; 12:766702. [PMID: 34721493 PMCID: PMC8553389 DOI: 10.3389/fpls.2021.766702] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2021] [Accepted: 09/15/2021] [Indexed: 05/17/2023]
Abstract
Over the past decades, advances in plant biotechnology have allowed the development of genetically modified maize varieties that have significantly impacted agricultural management and improved the grain yield worldwide. To date, genetically modified varieties represent 30% of the world's maize cultivated area and incorporate traits such as herbicide, insect and disease resistance, abiotic stress tolerance, high yield, and improved nutritional quality. Maize transformation, which is a prerequisite for genetically modified maize development, is no longer a major bottleneck. Protocols using morphogenic regulators have evolved significantly towards increasing transformation frequency and genotype independence. Emerging technologies using either stable or transient expression and tissue culture-independent methods, such as direct genome editing using RNA-guided endonuclease system as an in vivo desired-target mutator, simultaneous double haploid production and editing/haploid-inducer-mediated genome editing, and pollen transformation, are expected to lead significant progress in maize biotechnology. This review summarises the significant advances in maize transformation protocols, technologies, and applications and discusses the current status, including a pipeline for trait development and regulatory issues related to current and future genetically modified and genetically edited maize varieties.
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Affiliation(s)
- Juliana Erika de Carvalho Teixeira Yassitepe
- Embrapa Informática Agropecuária, Campinas, Brazil
- Genomics for Climate Change Research Center (GCCRC), Universidade Estadual de Campinas, Campinas, Brazil
- Centro de Biologia Molecular e Engenharia Genética, Universidade Estadual de Campinas, Campinas, Brazil
| | - Viviane Cristina Heinzen da Silva
- Genomics for Climate Change Research Center (GCCRC), Universidade Estadual de Campinas, Campinas, Brazil
- Centro de Biologia Molecular e Engenharia Genética, Universidade Estadual de Campinas, Campinas, Brazil
| | - José Hernandes-Lopes
- Embrapa Informática Agropecuária, Campinas, Brazil
- Genomics for Climate Change Research Center (GCCRC), Universidade Estadual de Campinas, Campinas, Brazil
- Centro de Biologia Molecular e Engenharia Genética, Universidade Estadual de Campinas, Campinas, Brazil
| | - Ricardo Augusto Dante
- Embrapa Informática Agropecuária, Campinas, Brazil
- Genomics for Climate Change Research Center (GCCRC), Universidade Estadual de Campinas, Campinas, Brazil
- Centro de Biologia Molecular e Engenharia Genética, Universidade Estadual de Campinas, Campinas, Brazil
| | - Isabel Rodrigues Gerhardt
- Embrapa Informática Agropecuária, Campinas, Brazil
- Genomics for Climate Change Research Center (GCCRC), Universidade Estadual de Campinas, Campinas, Brazil
- Centro de Biologia Molecular e Engenharia Genética, Universidade Estadual de Campinas, Campinas, Brazil
| | - Fernanda Rausch Fernandes
- Embrapa Informática Agropecuária, Campinas, Brazil
- Genomics for Climate Change Research Center (GCCRC), Universidade Estadual de Campinas, Campinas, Brazil
- Centro de Biologia Molecular e Engenharia Genética, Universidade Estadual de Campinas, Campinas, Brazil
| | - Priscila Alves da Silva
- Genomics for Climate Change Research Center (GCCRC), Universidade Estadual de Campinas, Campinas, Brazil
- Centro de Biologia Molecular e Engenharia Genética, Universidade Estadual de Campinas, Campinas, Brazil
| | - Leticia Rios Vieira
- Genomics for Climate Change Research Center (GCCRC), Universidade Estadual de Campinas, Campinas, Brazil
- Centro de Biologia Molecular e Engenharia Genética, Universidade Estadual de Campinas, Campinas, Brazil
| | - Vanessa Bonatti
- Genomics for Climate Change Research Center (GCCRC), Universidade Estadual de Campinas, Campinas, Brazil
- Centro de Biologia Molecular e Engenharia Genética, Universidade Estadual de Campinas, Campinas, Brazil
| | - Paulo Arruda
- Genomics for Climate Change Research Center (GCCRC), Universidade Estadual de Campinas, Campinas, Brazil
- Centro de Biologia Molecular e Engenharia Genética, Universidade Estadual de Campinas, Campinas, Brazil
- Departamento de Genética, Evolução, Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, Brazil
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22
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Ma Q, Xu X, Wang W, Zhao L, Ma D, Xie Y. Comparative analysis of alfalfa (Medicago sativa L.) seedling transcriptomes reveals genotype-specific drought tolerance mechanisms. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2021; 166:203-214. [PMID: 34118683 DOI: 10.1016/j.plaphy.2021.05.008] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2021] [Accepted: 05/05/2021] [Indexed: 06/12/2023]
Abstract
Drought is one of the main abiotic factors that affect alfalfa yield. The identification of genes that control this complex trait can provide important insights for alfalfa breeding. However, little is known about how alfalfa responds and adapts to drought stress, particularly in cultivars of differing drought tolerance. In this study, the drought-tolerant cultivar Dryland 'DT' and the drought-sensitive cultivar WL343HQ 'DS' were used to characterize leaf and root physiological responses and transcriptional changes in response to water deficit. Under drought stress, Dryland roots (DTR) showed more differentially expressed genes than WL343HQ roots (DSR), whereas WL343HQ leaves (DSL) showed more differentially expressed genes than Dryland leaves (DTL). Many of these genes were involved in stress-related pathways, carbohydrate metabolism, and lignin and wax biosynthesis, which may have improved the drought tolerance of alfalfa. We also observed that several genes related to ABA metabolism, root elongation, peroxidase activity, cell membrane stability, ubiquitination, and genetic processing responded to drought stress in alfalfa. We highlighted several candidate genes, including sucrose synthase, xylan 1,4-beta-xylosidase, primary-amine oxidase, and alcohol-forming fatty acyl-CoA reductase, for future studies on drought stress resistance in alfalfa and other plant species. In summary, our results reveal the unique drought adaptation and resistance characteristics of two alfalfa genotypes. These findings, which may be valuable for drought resistance breeding, warrant further gene functional analysis to augment currently available information and to clarify the drought stress regulatory mechanisms of alfalfa and other plants.
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Affiliation(s)
- Qiaoli Ma
- Agricultural College, Ningxia University, Yinchuan, 750021, China.
| | - Xing Xu
- Agricultural College, Ningxia University, Yinchuan, 750021, China.
| | - Wenjing Wang
- Key Laboratory for Restoration and Reconstruction of Degraded Ecosystem in Northwest China of Ministry of Education, Ningxia University, Yinchuan, 750021, China.
| | - Lijuan Zhao
- Key Laboratory for Restoration and Reconstruction of Degraded Ecosystem in Northwest China of Ministry of Education, Ningxia University, Yinchuan, 750021, China.
| | - Dongmei Ma
- Key Laboratory for Restoration and Reconstruction of Degraded Ecosystem in Northwest China of Ministry of Education, Ningxia University, Yinchuan, 750021, China.
| | - Yingzhong Xie
- Agricultural College, Ningxia University, Yinchuan, 750021, China.
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23
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Simmons CR, Lafitte HR, Reimann KS, Brugière N, Roesler K, Albertsen MC, Greene TW, Habben JE. Successes and insights of an industry biotech program to enhance maize agronomic traits. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2021; 307:110899. [PMID: 33902858 DOI: 10.1016/j.plantsci.2021.110899] [Citation(s) in RCA: 30] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2021] [Revised: 03/22/2021] [Accepted: 03/26/2021] [Indexed: 05/18/2023]
Abstract
Corteva Agriscience™ ran a discovery research program to identify biotech leads for improving maize Agronomic Traits such as yield, drought tolerance, and nitrogen use efficiency. Arising from many discovery sources involving thousands of genes, this program generated over 3331 DNA cassette constructs involving a diverse set of circa 1671 genes, whose transformed maize events were field tested from 2000 to 2018 under managed environments designed to evaluate their potential for commercialization. We demonstrate that a subgroup of these transgenic events improved yield in field-grown elite maize breeding germplasm. A set of at least 22 validated gene leads are identified and described which represent diverse molecular and physiological functions. These leads illuminate sectors of biology that could guide crop improvement in maize and perhaps other crops. In this review and interpretation, we share some of our approaches and results, and key lessons learned in discovering and developing these maize Agronomic Traits leads.
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Affiliation(s)
- Carl R Simmons
- Corteva Agriscience, 7300 NW 62nd Avenue, Johnston, IA, 50131, USA.
| | - H Renee Lafitte
- Corteva Agriscience, 7300 NW 62nd Avenue, Johnston, IA, 50131, USA
| | - Kellie S Reimann
- Corteva Agriscience, 7300 NW 62nd Avenue, Johnston, IA, 50131, USA
| | - Norbert Brugière
- Corteva Agriscience, 7300 NW 62nd Avenue, Johnston, IA, 50131, USA
| | - Keith Roesler
- Corteva Agriscience, 7300 NW 62nd Avenue, Johnston, IA, 50131, USA
| | - Marc C Albertsen
- Corteva Agriscience, 7300 NW 62nd Avenue, Johnston, IA, 50131, USA
| | - Thomas W Greene
- Corteva Agriscience, 7300 NW 62nd Avenue, Johnston, IA, 50131, USA
| | - Jeffrey E Habben
- Corteva Agriscience, 7300 NW 62nd Avenue, Johnston, IA, 50131, USA
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José Andrade Viana M, Zerlotini A, de Alvarenga Mudadu M. Plant Co-expression Annotation Resource: a web server for identifying targets for genetically modified crop breeding pipelines. BMC Bioinformatics 2021; 22:46. [PMID: 33546584 PMCID: PMC7863420 DOI: 10.1186/s12859-020-03792-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2020] [Accepted: 09/30/2020] [Indexed: 11/10/2022] Open
Abstract
The development of genetically modified crops (GM) includes the discovery of candidate genes through bioinformatics analysis using genomics data, gene expression, and others. Proteins of unknown function (PUFs) are interesting targets for GM crops breeding pipelines for the novelty associated with such targets and also to avoid copyright protection. One method of inferring the putative function of PUFs is by relating them to factors of interest such as abiotic stresses using orthology and co-expression networks, in a guilt-by-association manner. In this regard, we have downloaded, analyzed, and processed genomics data of 53 angiosperms, totaling 1,862,010 genes and 2,332,974 RNA. Diamond and InterproScan were used to discover 72,266 PUFs for all organisms. RNA-seq datasets related to abiotic stresses were downloaded from NCBI/GEO. The RNA-seq data was used as input to the LSTrAP software to construct co-expression networks. LSTrAP also created clusters of transcripts with correlated expression, whose members are more probably related to the molecular mechanisms associated with abiotic stresses in the plants. Orthologous groups were created (OrhtoMCL) using all 2,332,974 proteins in order to associate PUFs to abiotic stress-related clusters of co-expression and therefore infer their function in a guilt-by-association manner. A freely available web resource named "Plant Co-expression Annotation Resource" ( https://www.machado.cnptia.embrapa.br/plantannot ), Plantannot, was created to provide indexed queries to search for PUF putatively associated with abiotic stresses. The web interface also allows browsing, querying, and retrieving of public genomics data from 53 plants. We hope Plantannot to be useful for researchers trying to obtain novel GM crops resistant to climate change hazards.
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Affiliation(s)
- Marcos José Andrade Viana
- Graduate Program in Bioinformatics, Institute of Biological Sciences, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, 31270-901, Brazil.,Embrapa Milho e Sorgo, Sete Lagoas, Minas Gerais, 285, Brazil
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25
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Antonucci G, Croci M, Miras-Moreno B, Fracasso A, Amaducci S. Integration of Gas Exchange With Metabolomics: High-Throughput Phenotyping Methods for Screening Biostimulant-Elicited Beneficial Responses to Short-Term Water Deficit. FRONTIERS IN PLANT SCIENCE 2021; 12:678925. [PMID: 34140966 PMCID: PMC8204046 DOI: 10.3389/fpls.2021.678925] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2021] [Accepted: 05/04/2021] [Indexed: 05/12/2023]
Abstract
Biostimulants are emerging as a feasible tool for counteracting reduction in climate change-related yield and quality under water scarcity. As they are gaining attention, the necessity for accurately assessing phenotypic variables in their evaluation is emerging as a critical issue. In light of this, high-throughput phenotyping techniques have been more widely adopted. The main bottleneck of these techniques is represented by data management, which needs to be tailored to the complex, often multifactorial, data. This calls for the adoption of non-linear regression models capable of capturing dynamic data and also the interaction and effects between multiple factors. In this framework, a commercial glycinebetaine- (GB-) based biostimulant (Vegetal B60, ED&F Man) was tested and distributed at a rate of 6 kg/ha. Exogenous application of GB, a widely accumulated and documented stress adaptor molecule in plants, has been demonstrated to enhance the plant abiotic stress tolerance, including drought. Trials were conducted on tomato plants during the flowering stage in a greenhouse. The experiment was designed as a factorial combination of irrigation (water-stressed and well-watered) and biostimulant treatment (treated and control) and adopted a mixed phenotyping-omics approach. The efficacy of a continuous whole-canopy multichamber system coupled with generalized additive mixed modeling (GAMM) was evaluated to discriminate between water-stressed plants under the biostimulant treatment. Photosynthetic performance was evaluated by using GAMM, and was then correlated to metabolic profile. The results confirmed a higher photosynthetic efficiency of the treated plants, which is correlated to biostimulant-mediated drought tolerance. Furthermore, metabolomic analyses demonstrated the priming effect of the biostimulant for stress tolerance and detoxification and stabilization of photosynthetic machinery. In support of this, the overaccumulation of carotenoids was particularly relevant, given their photoprotective role in preventing the overexcitation of photosystem II. Metabolic profile and photosynthetic performance findings suggest an increased effective use of water (EUW) through the overaccumulation of lipids and leaf thickening. The positive effect of GB on water stress resistance could be attributed to both the delayed onset of stress and the elicitation of stress priming through the induction of H2O2-mediated antioxidant mechanisms. Overall, the mixed approach supported by a GAMM analysis could prove a valuable contribution to high-throughput biostimulant testing.
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Affiliation(s)
- Giulia Antonucci
- Department of Sustainable Crop Production, Università Cattolica del Sacro Cuore (UCSC), Piacenza, Italy
- *Correspondence: Giulia Antonucci
| | - Michele Croci
- Department of Sustainable Crop Production, Università Cattolica del Sacro Cuore (UCSC), Piacenza, Italy
| | - Begoña Miras-Moreno
- Department for Sustainable Food Process, Research Centre for Nutrigenomics and Proteomics, Università Cattolica del Sacro Cuore, Piacenza, Italy
| | - Alessandra Fracasso
- Department of Sustainable Crop Production, Università Cattolica del Sacro Cuore (UCSC), Piacenza, Italy
| | - Stefano Amaducci
- Department of Sustainable Crop Production, Università Cattolica del Sacro Cuore (UCSC), Piacenza, Italy
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Daloso DDM, Williams TCR. Current Challenges in Plant Systems Biology. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2021; 1346:155-170. [DOI: 10.1007/978-3-030-80352-0_9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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27
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Simmons CR, Weers BP, Reimann KS, Abbitt SE, Frank MJ, Wang W, Wu J, Shen B, Habben JE. Maize BIG GRAIN1 homolog overexpression increases maize grain yield. PLANT BIOTECHNOLOGY JOURNAL 2020; 18:2304-2315. [PMID: 32356392 PMCID: PMC7589417 DOI: 10.1111/pbi.13392] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2019] [Revised: 03/15/2020] [Accepted: 04/20/2020] [Indexed: 05/14/2023]
Abstract
The Zea Mays BIG GRAIN 1 HOMOLOG 1 (ZM-BG1H1) was ectopically expressed in maize. Elite commercial hybrid germplasm was yield tested in diverse field environment locations representing commercial models. Yield was measured in 101 tests across all 4 events, 26 locations over 2 years, for an average yield gain of 355 kg/ha (5.65 bu/ac) above control, with 83% tests broadly showing yield gains (range +2272 kg/ha to -1240 kg/ha), with seven tests gaining more than one metric ton per hectare. Plant and ear height were slightly elevated, and ear and tassel flowering time were delayed one day, but ASI was unchanged, and these traits did not correlate to yield gain. ZM-BG1H1 overexpression is associated with increased ear kernel row number and total ear kernel number and mass, but individual kernels trended slightly smaller and less dense. The ZM-BG1H1 protein is detected in the plasma membrane like rice OS-BG1. Five predominant native ZM-BG1H1 alleles exhibit little structural and expression variation compared to the large increased expression conferred by these ectopic alleles.
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Affiliation(s)
| | | | | | | | | | | | | | - Bo Shen
- Corteva AgriscienceJohnstonIAUSA
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28
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Szala K, Ogonowska H, Lugowska B, Zmijewska B, Wyszynska R, Dmochowska-Boguta M, Orczyk W, Nadolska-Orczyk A. Different sets of TaCKX genes affect yield-related traits in wheat plants grown in a controlled environment and in field conditions. BMC PLANT BIOLOGY 2020; 20:496. [PMID: 33121443 PMCID: PMC7597040 DOI: 10.1186/s12870-020-02713-9] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2020] [Accepted: 10/20/2020] [Indexed: 05/21/2023]
Abstract
BACKGROUND TaCKX wheat gene family members (GFMs) encode the enzyme cytokinin oxidase/dehydrogenase (CKX), which irreversibly degrades cytokinins. The genes are important regulators of cytokinin content and take part in growth and development, with a major impact on yield-related traits. The goal of this research was to test whether these genes might be differentially expressed in the field compared to laboratory conditions and consequently differently affect plant development and yield. RESULTS We compared expression and crosstalk of the TaCKX GFMs and TaNAC2-5A gene in modern varieties grown in a growth chamber (GC) and in the field and looked for differences in their impact on yield-related traits. The TaNAC2-5A gene was included in the research since it was expected to play an important role in co-regulation of these genes. The range of relative expression levels of TaCKX GFMs and TaNAC2-5A gene among tested cultivars was from 5 for TaCKX8 to more than 100 for TaCKX9 in the GC and from 6 for TaCKX8 to 275 for TaCKX10 in the field. The range was similar for four of them in the GC, but was much higher for seven others and TaNAC2-5A in the field. The TaCKX GFMs and TaNAC2-5A form co-expression groups, which differ depending on growth conditions. Consequently, the genes also differently regulate yield-related traits in the GC and in the field. TaNAC2-5A took part in negative regulation of tiller number and CKX activity in seedling roots only in controlled GC conditions. Grain number and grain yield were negatively regulated by TaCKX10 in the GC but positively by TaCKX8 and others in the field. Some of the genes, which were expressed in seedling roots, negatively influenced tiller number and positively regulated seedling root weight, CKX activity in the spikes, thousand grain weight (TGW) as well as formation of semi-empty spikes. CONCLUSIONS We have documented that: 1) natural variation in expression levels of tested genes in both environments is very high, indicating the possibility of selection of beneficial genotypes for breeding purposes, 2) to create a model of an ideotype for breeding, we need to take into consideration the natural environment.
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Affiliation(s)
- Karolina Szala
- Department of Functional Genomics, Plant Breeding and Acclimatization Institute - National Research Institute, Radzikow, 05-870, Blonie, Poland
| | - Hanna Ogonowska
- Department of Functional Genomics, Plant Breeding and Acclimatization Institute - National Research Institute, Radzikow, 05-870, Blonie, Poland
| | | | - Barbara Zmijewska
- Plant Breeding Strzelce Ltd., Co. - IHAR Group, Konczewice 1, 87-140, Chelmza, Poland
| | - Renata Wyszynska
- International Institute of Molecular and Cell Biology, Trojdena 4, 02-109, Warsaw, Poland
| | - Marta Dmochowska-Boguta
- Department of Genetic Engineering, Plant Breeding and Acclimatization Institute - National Research Institute, Radzikow, 05-870, Blonie, Poland
| | - Waclaw Orczyk
- Department of Genetic Engineering, Plant Breeding and Acclimatization Institute - National Research Institute, Radzikow, 05-870, Blonie, Poland
| | - Anna Nadolska-Orczyk
- Department of Functional Genomics, Plant Breeding and Acclimatization Institute - National Research Institute, Radzikow, 05-870, Blonie, Poland.
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29
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Abscisic Acid Biosynthesis and Signaling in Plants: Key Targets to Improve Water Use Efficiency and Drought Tolerance. APPLIED SCIENCES-BASEL 2020. [DOI: 10.3390/app10186322] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
The observation of a much-improved fitness of wild-type plants over abscisic acid (ABA)-deficient mutants during drought has led researchers from all over to world to perform experiments aiming at a better understanding of how this hormone modulates the physiology of plants under water-limited conditions. More recently, several promising approaches manipulating ABA biosynthesis and signaling have been explored to improve water use efficiency and confer drought tolerance to major crop species. Here, we review recent progress made in the last decade on (i) ABA biosynthesis, (ii) the roles of ABA on plant-water relations and on primary and secondary metabolisms during drought, and (iii) the regulation of ABA levels and perception to improve water use efficiency and drought tolerance in crop species.
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30
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F T Avelino A, Dall'erba S. What Factors Drive the Changes in Water Withdrawals in the U.S. Agriculture and Food Manufacturing Industries between 1995 and 2010? ENVIRONMENTAL SCIENCE & TECHNOLOGY 2020; 54:10421-10434. [PMID: 32786598 DOI: 10.1021/acs.est.9b07071] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Climate change and increasing world population will directly impact the global food supply chain linkages. In the United States, agricultural production requires less irrigated water than before but it still accounts for a third of total water withdrawals. To better understand the evolution of its water use, we perform a structural decomposition analysis of water withdrawals across eight different crops and six livestock categories and differentiate the trends over 1995-2005 vs 2005-2010 to account for the role of the economic crisis in the second period. Based on USGS data, the results show that both periods experienced an overall decline in water withdrawals in the production of all crops except oilseeds. This trend is driven by a decrease in water intensity, reflecting greater efficiency of irrigation systems, and by reduced local per capita income in the second period. However, increased foreign demand for water-intensive sectors like oilseeds from NAFTA and Asian partners mitigated the decline. Results indicate also a decreasing water use in livestock production partially due to a shift from red to white meat consumption in the country. Arguably, recent tariff wars and border closures have greatly reduced the virtual water embodied in American exports.
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Affiliation(s)
- Andre F T Avelino
- National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden, Colorado 80401, United States
| | - Sandy Dall'erba
- Department of Agricultural and Consumer Economics, Regional Economics Applications Laboratory, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
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31
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Gerveni M, Fernandes Tomon Avelino A, Dall'erba S. Drivers of Water Use in the Agricultural Sector of the European Union 27. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2020; 54:9191-9199. [PMID: 32609504 DOI: 10.1021/acs.est.9b06662] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Population growth and the uncertain hazards that accompany climate change have put increasing pressure on the management and sustainability of water. It has a direct impact on agriculture and its domestic and international supply chain linkages. As one of the largest agricultural producers in the world, the European Union (EU) is particularly sensitive to changes in water availability. Therefore, we perform a structural decomposition analysis based on the recently released EXIOBASE 3 database to examine in depth how changes in water input coefficients, in final demand and in technology have affected changes in water use across crops. Crop production consumes 99% of the direct water in agriculture. Our results show that the largest EU crop producers have experienced an increase in water use that is mostly driven by changes in technology. On the other hand, several Mediterranean countries, where water scarcity has been a problem for years, have decreased their water consumption mostly thanks to an improvement in their water intensity. Results by crop are consistent with those at the aggregated level except for vegetables of which water use changes have been primarily driven by changes in final demand and water intensity.
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Affiliation(s)
- Maria Gerveni
- Department of Agricultural and Consumer Economics, Regional Economics Applications Laboratory, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
| | | | - Sandy Dall'erba
- Department of Agricultural and Consumer Economics, Regional Economics Applications Laboratory, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
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32
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Simopoulos CMA, MacLeod MJR, Irani S, Sung WWL, Champigny MJ, Summers PS, Golding GB, Weretilnyk EA. Coding and long non-coding RNAs provide evidence of distinct transcriptional reprogramming for two ecotypes of the extremophile plant Eutrema salsugineum undergoing water deficit stress. BMC Genomics 2020; 21:396. [PMID: 32513102 PMCID: PMC7278158 DOI: 10.1186/s12864-020-06793-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2020] [Accepted: 05/25/2020] [Indexed: 12/26/2022] Open
Abstract
Background The severity and frequency of drought has increased around the globe, creating challenges in ensuring food security for a growing world population. As a consequence, improving water use efficiency by crops has become an important objective for crop improvement. Some wild crop relatives have adapted to extreme osmotic stresses and can provide valuable insights into traits and genetic signatures that can guide efforts to improve crop tolerance to water deficits. Eutrema salsugineum, a close relative of many cruciferous crops, is a halophytic plant and extremophyte model for abiotic stress research. Results Using comparative transcriptomics, we show that two E. salsugineum ecotypes display significantly different transcriptional responses towards a two-stage drought treatment. Even before visibly wilting, water deficit led to the differential expression of almost 1,100 genes for an ecotype from the semi-arid, sub-arctic Yukon, Canada, but only 63 genes for an ecotype from the semi-tropical, monsoonal, Shandong, China. After recovery and a second drought treatment, about 5,000 differentially expressed genes were detected in Shandong plants versus 1,900 genes in Yukon plants. Only 13 genes displayed similar drought-responsive patterns for both ecotypes. We detected 1,007 long non-protein coding RNAs (lncRNAs), 8% were only expressed in stress-treated plants, a surprising outcome given the documented association between lncRNA expression and stress. Co-expression network analysis of the transcriptomes identified eight gene clusters where at least half of the genes in each cluster were differentially expressed. While many gene clusters were correlated to drought treatments, only a single cluster significantly correlated to drought exposure in both ecotypes. Conclusion Extensive, ecotype-specific transcriptional reprogramming with drought was unexpected given that both ecotypes are adapted to saline habitats providing persistent exposure to osmotic stress. This ecotype-specific response would have escaped notice had we used a single exposure to water deficit. Finally, the apparent capacity to improve tolerance and growth after a drought episode represents an important adaptive trait for a plant that thrives under semi-arid Yukon conditions, and may be similarly advantageous for crop species experiencing stresses attributed to climate change.
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Affiliation(s)
- Caitlin M A Simopoulos
- Department of Biology, McMaster University, 1280 Main Street West, Hamilton, Canada.,Current address: Department of Biochemistry, Microbiology and Immunology, University of Ottawa, 451 Smyth Road, Ottawa, Canada
| | - Mitchell J R MacLeod
- Department of Biology, McMaster University, 1280 Main Street West, Hamilton, Canada
| | - Solmaz Irani
- Department of Biology, McMaster University, 1280 Main Street West, Hamilton, Canada
| | - Wilson W L Sung
- Department of Biology, McMaster University, 1280 Main Street West, Hamilton, Canada
| | - Marc J Champigny
- Department of Biology, McMaster University, 1280 Main Street West, Hamilton, Canada
| | - Peter S Summers
- Department of Biology, McMaster University, 1280 Main Street West, Hamilton, Canada
| | - G Brian Golding
- Department of Biology, McMaster University, 1280 Main Street West, Hamilton, Canada
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Kemp L, Adam L, Boehm CR, Breitling R, Casagrande R, Dando M, Djikeng A, Evans NG, Hammond R, Hills K, Holt LA, Kuiken T, Markotić A, Millett P, Napier JA, Nelson C, ÓhÉigeartaigh SS, Osbourn A, Palmer MJ, Patron NJ, Perello E, Piyawattanametha W, Restrepo-Schild V, Rios-Rojas C, Rhodes C, Roessing A, Scott D, Shapira P, Simuntala C, Smith RDJ, Sundaram LS, Takano E, Uttmark G, Wintle BC, Zahra NB, Sutherland WJ. Bioengineering horizon scan 2020. eLife 2020; 9:e54489. [PMID: 32479263 PMCID: PMC7259952 DOI: 10.7554/elife.54489] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2019] [Accepted: 05/14/2020] [Indexed: 01/01/2023] Open
Abstract
Horizon scanning is intended to identify the opportunities and threats associated with technological, regulatory and social change. In 2017 some of the present authors conducted a horizon scan for bioengineering (Wintle et al., 2017). Here we report the results of a new horizon scan that is based on inputs from a larger and more international group of 38 participants. The final list of 20 issues includes topics spanning from the political (the regulation of genomic data, increased philanthropic funding and malicious uses of neurochemicals) to the environmental (crops for changing climates and agricultural gene drives). The early identification of such issues is relevant to researchers, policy-makers and the wider public.
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Affiliation(s)
- Luke Kemp
- Centre for the Study of Existential Risk (CSER), University of CambridgeCambridgeUnited Kingdom
- Biosecurity Research Initiative at St Catharine’s College, University of CambridgeCambridgeUnited Kingdom
| | | | - Christian R Boehm
- Centre for the Study of Existential Risk (CSER), University of CambridgeCambridgeUnited Kingdom
| | - Rainer Breitling
- Manchester Institute of Biotechnology, Faculty of Science and Bioengineering, University of ManchesterManchesterUnited Kingdom
| | | | - Malcolm Dando
- Division of Peace Studies and International Development, University of BradfordBradfordUnited Kingdom
| | - Appolinaire Djikeng
- Centre for Tropical Livestock Genetics and Health, Royal (Dick) School of Veterinary StudiesEdinburghUnited Kingdom
| | - Nicholas G Evans
- Department of Philosophy, University of MassachusettsLowellUnited States
- Rogue BioethicsLowellUnited States
| | | | | | - Lauren A Holt
- Centre for the Study of Existential Risk (CSER), University of CambridgeCambridgeUnited Kingdom
- Biosecurity Research Initiative at St Catharine’s College, University of CambridgeCambridgeUnited Kingdom
| | - Todd Kuiken
- Genetic Engineering and Society Center, North Carolina State UniversityRaleighUnited States
| | - Alemka Markotić
- University Hospital for Infectious DiseasesZagrebCroatia
- Medical School, University of RijekaRijekaCroatia
- Catholic University of CroatiaZagrebCroatia
| | - Piers Millett
- Future of Humanity Institute, University of OxfordOxfordUnited Kingdom
- iGem FoundationBostonUnited States
| | | | - Cassidy Nelson
- Future of Humanity Institute, University of OxfordOxfordUnited Kingdom
| | - Seán S ÓhÉigeartaigh
- Centre for the Study of Existential Risk (CSER), University of CambridgeCambridgeUnited Kingdom
- Biosecurity Research Initiative at St Catharine’s College, University of CambridgeCambridgeUnited Kingdom
| | | | - Megan J Palmer
- Center for International Security and Cooperation (CSIAC), Stanford UniversityStanfordUnited States
- Department of Bioengineering, Stanford UniversityStanfordUnited States
| | | | | | - Wibool Piyawattanametha
- Biomedical Engineering Department, Faculty of Engineering, King Mongkut's Institute of Technology LadkrabangBangkokThailand
- Institute for Quantitative Health Sciences and Engineering, Michigan State UniversityEast LansingUnited States
| | | | - Clarissa Rios-Rojas
- Centre for the Study of Existential Risk (CSER), University of CambridgeCambridgeUnited Kingdom
- Ekpa’Palek: Empowering Latin-American Young ProfessionalsLimaPeru
| | - Catherine Rhodes
- Centre for the Study of Existential Risk (CSER), University of CambridgeCambridgeUnited Kingdom
- Biosecurity Research Initiative at St Catharine’s College, University of CambridgeCambridgeUnited Kingdom
| | - Anna Roessing
- Department of Politics, Languages and International Studies, University of BathBathUnited Kingdom
| | - Deborah Scott
- Science, Technology & Innovation Studies, School of Social and Political Science, University of EdinburghEdinburghUnited Kingdom
| | - Philip Shapira
- Manchester Institute of Innovation Research, Alliance Manchester Business School, University of ManchesterManchesterUnited Kingdom
- SYNBIOCHEM, University of ManchesterManchesterUnited Kingdom
- School of Public Policy, Georgia Institute of TechnologyAtlantaUnited States
| | | | - Robert DJ Smith
- Science, Technology & Innovation Studies, School of Social and Political Science, University of EdinburghEdinburghUnited Kingdom
| | - Lalitha S Sundaram
- Centre for the Study of Existential Risk (CSER), University of CambridgeCambridgeUnited Kingdom
- Biosecurity Research Initiative at St Catharine’s College, University of CambridgeCambridgeUnited Kingdom
| | - Eriko Takano
- Manchester Institute of Biotechnology, Faculty of Science and Bioengineering, University of ManchesterManchesterUnited Kingdom
| | - Gwyn Uttmark
- Department of Chemistry, Stanford UniversityStanfordUnited States
| | - Bonnie C Wintle
- School of BioSciences, University of MelbourneMelbourneAustralia
| | - Nadia B Zahra
- Department of Biotechnology, Qarshi UniversityLahorePakistan
| | - William J Sutherland
- Biosecurity Research Initiative at St Catharine’s College, University of CambridgeCambridgeUnited Kingdom
- Department of Zoology, University of CambridgeCambridgeUnited Kingdom
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Nelissen H, Sprenger H, Demuynck K, De Block J, Van Hautegem T, De Vliegher A, Inzé D. From laboratory to field: yield stability and shade avoidance genes are massively differentially expressed in the field. PLANT BIOTECHNOLOGY JOURNAL 2020; 18:1112-1114. [PMID: 31587443 PMCID: PMC7152599 DOI: 10.1111/pbi.13269] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2019] [Revised: 09/17/2019] [Accepted: 09/29/2019] [Indexed: 05/10/2023]
Affiliation(s)
- Hilde Nelissen
- Department of Plant Biotechnology and BioinformaticsGhent UniversityGhentBelgium
- VIB Center for Plant Systems BiologyGhentBelgium
| | - Heike Sprenger
- Department of Plant Biotechnology and BioinformaticsGhent UniversityGhentBelgium
- VIB Center for Plant Systems BiologyGhentBelgium
| | - Kirin Demuynck
- Department of Plant Biotechnology and BioinformaticsGhent UniversityGhentBelgium
- VIB Center for Plant Systems BiologyGhentBelgium
| | - Jolien De Block
- Department of Plant Biotechnology and BioinformaticsGhent UniversityGhentBelgium
- VIB Center for Plant Systems BiologyGhentBelgium
| | - Tom Van Hautegem
- Department of Plant Biotechnology and BioinformaticsGhent UniversityGhentBelgium
- VIB Center for Plant Systems BiologyGhentBelgium
| | - Alex De Vliegher
- Crop Husbandry and EnvironmentInstitute for Agricultural and Fisheries Research (ILVO)MerelbekeBelgium
| | - Dirk Inzé
- Department of Plant Biotechnology and BioinformaticsGhent UniversityGhentBelgium
- VIB Center for Plant Systems BiologyGhentBelgium
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Vaidya AS, Helander JDM, Peterson FC, Elzinga D, Dejonghe W, Kaundal A, Park SY, Xing Z, Mega R, Takeuchi J, Khanderahoo B, Bishay S, Volkman BF, Todoroki Y, Okamoto M, Cutler SR. Dynamic control of plant water use using designed ABA receptor agonists. Science 2020; 366:366/6464/eaaw8848. [PMID: 31649167 DOI: 10.1126/science.aaw8848] [Citation(s) in RCA: 84] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2019] [Accepted: 09/11/2019] [Indexed: 12/25/2022]
Abstract
Drought causes crop losses worldwide, and its impact is expected to increase as the world warms. This has motivated the development of small-molecule tools for mitigating the effects of drought on agriculture. We show here that current leads are limited by poor bioactivity in wheat, a widely grown staple crop, and in tomato. To address this limitation, we combined virtual screening, x-ray crystallography, and structure-guided design to develop opabactin (OP), an abscisic acid (ABA) mimic with up to an approximately sevenfold increase in receptor affinity relative to ABA and up to 10-fold greater activity in vivo. Studies in Arabidopsis thaliana reveal a role of the type III receptor PYRABACTIN RESISTANCE-LIKE 2 for the antitranspirant efficacy of OP. Thus, virtual screening and structure-guided optimization yielded newly discovered agonists for manipulating crop abiotic stress tolerance and water use.
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Affiliation(s)
- Aditya S Vaidya
- Institute for Integrative Genome Biology, University of California, Riverside, Riverside, CA 92521, USA.,Department of Botany and Plant Sciences, University of California, Riverside, Riverside, CA 92521, USA
| | - Jonathan D M Helander
- Institute for Integrative Genome Biology, University of California, Riverside, Riverside, CA 92521, USA.,Department of Botany and Plant Sciences, University of California, Riverside, Riverside, CA 92521, USA
| | - Francis C Peterson
- Department of Biochemistry, Medical College of Wisconsin, Milwaukee, WI 53226, USA
| | - Dezi Elzinga
- Institute for Integrative Genome Biology, University of California, Riverside, Riverside, CA 92521, USA.,Department of Botany and Plant Sciences, University of California, Riverside, Riverside, CA 92521, USA
| | - Wim Dejonghe
- Institute for Integrative Genome Biology, University of California, Riverside, Riverside, CA 92521, USA.,Department of Botany and Plant Sciences, University of California, Riverside, Riverside, CA 92521, USA
| | - Amita Kaundal
- Institute for Integrative Genome Biology, University of California, Riverside, Riverside, CA 92521, USA.,Department of Plants, Soils and Climate, Utah State University, Logan, UT 84322, USA
| | - Sang-Youl Park
- Institute for Integrative Genome Biology, University of California, Riverside, Riverside, CA 92521, USA.,Department of Botany and Plant Sciences, University of California, Riverside, Riverside, CA 92521, USA
| | - Zenan Xing
- Institute for Integrative Genome Biology, University of California, Riverside, Riverside, CA 92521, USA.,Department of Botany and Plant Sciences, University of California, Riverside, Riverside, CA 92521, USA
| | - Ryousuke Mega
- Arid Land Research Center, Tottori University, 1390 Hamasaka, Tottori 680-0001, Japan
| | - Jun Takeuchi
- Faculty of Agriculture, Shizuoka University, Shizuoka 422-8529, Japan.,Research Institute of Green Science and Technology, Shizuoka University, Shizuoka 422-8529, Japan
| | - Bardia Khanderahoo
- Institute for Integrative Genome Biology, University of California, Riverside, Riverside, CA 92521, USA.,Department of Botany and Plant Sciences, University of California, Riverside, Riverside, CA 92521, USA
| | - Steven Bishay
- Institute for Integrative Genome Biology, University of California, Riverside, Riverside, CA 92521, USA.,Department of Botany and Plant Sciences, University of California, Riverside, Riverside, CA 92521, USA
| | - Brian F Volkman
- Department of Biochemistry, Medical College of Wisconsin, Milwaukee, WI 53226, USA
| | - Yasushi Todoroki
- Faculty of Agriculture, Shizuoka University, Shizuoka 422-8529, Japan.,Research Institute of Green Science and Technology, Shizuoka University, Shizuoka 422-8529, Japan
| | - Masanori Okamoto
- Center for Bioscience Research and Education, Utsunomiya University, 350 Mine, Utsunomiya, Tochigi 321-8505, Japan.,PRESTO, Japan Science and Technology Agency, 4-1-8 Honcho, Kawaguchi, Saitama 332-0012, Japan
| | - Sean R Cutler
- Institute for Integrative Genome Biology, University of California, Riverside, Riverside, CA 92521, USA. .,Department of Botany and Plant Sciences, University of California, Riverside, Riverside, CA 92521, USA
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36
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Paul MJ, Watson A, Griffiths CA. Linking fundamental science to crop improvement through understanding source and sink traits and their integration for yield enhancement. JOURNAL OF EXPERIMENTAL BOTANY 2020; 71:2270-2280. [PMID: 31665486 PMCID: PMC7134924 DOI: 10.1093/jxb/erz480] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2019] [Accepted: 10/11/2019] [Indexed: 05/19/2023]
Abstract
Understanding processes in sources and sinks that contribute to crop yields has taken years of painstaking research. For crop yield improvement, processes need to be understood as standalone mechanisms in addition to how these mechanisms perform at the crop level; currently there is often a chasm between the two. Fundamental mechanisms need to be considered in the context of crop ideotypes and the agricultural environment which is often more water limited than carbon limited. Different approaches for improvement should be considered, namely is there genetic variation? Or if not, could genetic modification, genome editing, or alternative approaches be utilized? Currently, there are few examples where genetic modification has improved intrinsic yield in the field for commercial application in a major crop. Genome editing, particularly of negative yield regulators as a first step, is providing new opportunities. Here we highlight key mechanisms in source and sink, arguing that for large yield increases integration of key processes is likely to produce the biggest successes within the framework of crop ideotypes with optimized phenology. We highlight a plethora of recent papers that show breakthroughs in fundamental science and the promise of the trehalose 6-phosphate signalling pathway, which regulates carbohydrate allocation which is key for many crop traits.
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Affiliation(s)
- Matthew J Paul
- Plant Science, Rothamsted Research, Harpenden, Hertfordshire, UK
- Correspondence:
| | - Amy Watson
- Plant Science, Rothamsted Research, Harpenden, Hertfordshire, UK
| | - Cara A Griffiths
- Plant Science, Rothamsted Research, Harpenden, Hertfordshire, UK
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37
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Komori T, Sun Y, Kashihara M, Uekawa N, Kato N, Usami S, Ishikawa N, Hiei Y, Kobayashi K, Kum R, Bortiri E, White K, Oeller P, Takemori N, Bate NJ, Komari T. High-throughput phenotypic screening of random genomic fragments in transgenic rice identified novel drought tolerance genes. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2020; 133:1291-1301. [PMID: 31980835 DOI: 10.1007/s00122-020-03548-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2019] [Accepted: 01/14/2020] [Indexed: 06/10/2023]
Abstract
Novel drought tolerance genes were identified by screening thousands of random genomic fragments from grass species in transgenic rice. Identification of agronomically important genes is a critical step for crop breeding through biotechnology. Multiple approaches have been employed to identify new gene targets, including comprehensive screening platforms for gene discovery such as the over-expression of libraries of cDNA clones. In this study, random genomic fragments from plants were introduced into rice and screened for drought tolerance in a high-throughput manner with the aim of finding novel genetic elements not exclusively limited to coding sequences. To illustrate the power of this approach, genomic libraries were constructed from four grass species, and screening a total of 50,825 transgenic rice lines for drought tolerance resulted in the identification of 12 reproducibly efficacious fragments. Of the twelve, two were from the mitochondrial genome of signal grass and ten were from the nuclear genome of buffalo grass. Subsequent sequencing and analyses revealed that the ten fragments from buffalo grass carried a similar genetic element with no significant homology to any previously characterized gene. The deduced protein sequence was rich in acidic amino acid residues in the C-terminal half, and two of the glutamic acid residues in the C-terminal half were shown to play an important role in drought tolerance. The results demonstrate that an open-ended screening approach using random genomic fragments could discover trait genes distinct from gene discovery based on known pathways or biased toward coding sequence over-expression.
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Affiliation(s)
- Toshiyuki Komori
- Plant Innovation Center, Japan Tobacco Inc., 700 Higashibara, Iwata, Shizuoka, 438-0802, Japan.
| | - Yuejin Sun
- Syngenta Crop Protection LLC, 9 Davis Drive, Research Triangle Park, NC, 27709, USA
| | - Masakazu Kashihara
- Plant Innovation Center, Japan Tobacco Inc., 700 Higashibara, Iwata, Shizuoka, 438-0802, Japan
| | - Natsuko Uekawa
- Plant Innovation Center, Japan Tobacco Inc., 700 Higashibara, Iwata, Shizuoka, 438-0802, Japan
| | - Norio Kato
- Plant Innovation Center, Japan Tobacco Inc., 700 Higashibara, Iwata, Shizuoka, 438-0802, Japan
| | - Satoru Usami
- Plant Innovation Center, Japan Tobacco Inc., 700 Higashibara, Iwata, Shizuoka, 438-0802, Japan
| | - Noriko Ishikawa
- Plant Innovation Center, Japan Tobacco Inc., 700 Higashibara, Iwata, Shizuoka, 438-0802, Japan
| | - Yukoh Hiei
- Plant Innovation Center, Japan Tobacco Inc., 700 Higashibara, Iwata, Shizuoka, 438-0802, Japan
| | - Kei Kobayashi
- Plant Innovation Center, Japan Tobacco Inc., 700 Higashibara, Iwata, Shizuoka, 438-0802, Japan
| | - Rise Kum
- Plant Innovation Center, Japan Tobacco Inc., 700 Higashibara, Iwata, Shizuoka, 438-0802, Japan
| | - Esteban Bortiri
- Syngenta Crop Protection LLC, 9 Davis Drive, Research Triangle Park, NC, 27709, USA
| | - Kimberly White
- Syngenta Crop Protection LLC, 9 Davis Drive, Research Triangle Park, NC, 27709, USA
| | - Paul Oeller
- Syngenta Crop Protection LLC, 9 Davis Drive, Research Triangle Park, NC, 27709, USA
| | - Naoki Takemori
- Plant Innovation Center, Japan Tobacco Inc., 700 Higashibara, Iwata, Shizuoka, 438-0802, Japan
| | - Nicholas J Bate
- Syngenta Crop Protection LLC, 9 Davis Drive, Research Triangle Park, NC, 27709, USA
- Pairwise Plants, 110 TW Alexander Drive, Research Triangle Park, NC, 27709, USA
| | - Toshihiko Komari
- Plant Innovation Center, Japan Tobacco Inc., 700 Higashibara, Iwata, Shizuoka, 438-0802, Japan
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38
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Menéndez E, Paço A. Is the Application of Plant Probiotic Bacterial Consortia Always Beneficial for Plants? Exploring Synergies between Rhizobial and Non-Rhizobial Bacteria and Their Effects on Agro-Economically Valuable Crops. Life (Basel) 2020; 10:E24. [PMID: 32178383 PMCID: PMC7151578 DOI: 10.3390/life10030024] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2020] [Revised: 03/03/2020] [Accepted: 03/09/2020] [Indexed: 12/13/2022] Open
Abstract
The overgrowth of human population and the demand for high-quality foods necessitate the search for sustainable alternatives to increase crop production. The use of biofertilizers, mostly based on plant probiotic bacteria (PPB), represents a reliable and eco-friendly solution. This heterogeneous group of bacteria possesses many features with positive effects on plants; however, how these bacteria with each other and with the environment when released into a field has still barely been studied. In this review, we focused on the diversity of root endophytic rhizobial and non-rhizobial bacteria existing within plant root tissues, and also on their potential applications as consortia exerting benefits for plants and the environment. We demonstrated the benefits of using bacterial inoculant consortia instead of single-strain inoculants. We then critically discussed several considerations that farmers, companies, governments, and the scientific community should take into account when a biofertilizer based on those PPBs is proposed, including (i) a proper taxonomic identification, (ii) the characterization of the beneficial features of PPB strains, and (iii) the ecological impacts on plants, environment, and plant/soil microbiomes. Overall, the success of a PPB consortium depends on many factors that must be considered and analyzed before its application as a biofertilizer in an agricultural system.
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Affiliation(s)
- Esther Menéndez
- MED—Mediterranean Institute for Agriculture, Environment and Development, Institute for Advanced Studies and Research (IIFA), University of Évora, Pólo da Mitra, Ap. 94, 7006-554 Évora, Portugal;
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39
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Zamani S, Naderi MR, Soleymani A, Nasiri BM. Sunflower (Helianthus annuus L.) biochemical properties and seed components affected by potassium fertilization under drought conditions. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2020; 190:110017. [PMID: 31846862 DOI: 10.1016/j.ecoenv.2019.110017] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2019] [Revised: 11/24/2019] [Accepted: 11/27/2019] [Indexed: 06/10/2023]
Abstract
The seed yield and healthy oil in sunflower (Helianthus annuus L.), as an important industrial crop, decrease under stress. There is not much investigation, to our knowledge, on the use of potassium fertilization, a regulator of plant water potential, affecting the biochemical properties and seed components of sunflower under drought stress. Accordingly, such parameters were investigated in a split-split plot field experiment, conducted in two different field sites (Natanz (Nt) and Eghlid (Eg), Iran), using potassium fertilization (subplots, 0, 150 and 300 kg/ha) and six drought levels (main plots) in four replicates. Although stress significantly affected sunflower biochemical properties and seed components in the two fields, the effects of stress were more pronounced in the Eg site (significant interaction of field and drought). The plant alleviated the stress by increasing the proline, oleic and linoleic acid concentrations, however, potassium fertilization also increased plant tolerance further under stress by enhancing such components compared with control. Interestingly, the Eg site was more responsive to the potassium fertilization (significant interaction of field and fertilization), as the fertilizer resulted in a higher rate of plant biochemical properties and seed components. The use of potassium fertilization at 300 kg/ha (K3) was the most effective treatment in the alleviation of stress. Interestingly, under drought stress, potassium contributed to the enhanced quantity and quality of sunflower by increasing seed components, and enhancing the biochemical properties of the plant, which can also improve crop physiological mechanisms. The results can further increase our understanding related to the effects of potassium fertilization on the yield and physiology of sunflower under drought stress. Such results are of economic, environmental and health significance.
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Affiliation(s)
- Saeid Zamani
- Department of Agronomy and Crop Breeding, College of Agriculture, Isfahan (Khorasgan) Branch, Islamic Azad University, Isfahan, Iran
| | - Mohammad Reza Naderi
- Department of Agronomy and Crop Breeding, College of Agriculture, Isfahan (Khorasgan) Branch, Islamic Azad University, Isfahan, Iran.
| | - Ali Soleymani
- Department of Agronomy and Crop Breeding, College of Agriculture, Isfahan (Khorasgan) Branch, Islamic Azad University, Isfahan, Iran
| | - Bahram Majd Nasiri
- Department of Agronomy and Crop Breeding, College of Agriculture, Isfahan (Khorasgan) Branch, Islamic Azad University, Isfahan, Iran
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40
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Lamarque LJ, Delzon S, Toups H, Gravel AI, Corso D, Badel E, Burlett R, Charrier G, Cochard H, Jansen S, King A, Torres-Ruiz JM, Pouzoulet J, Cramer GR, Thompson AJ, Gambetta GA. Over-accumulation of abscisic acid in transgenic tomato plants increases the risk of hydraulic failure. PLANT, CELL & ENVIRONMENT 2020; 43:548-562. [PMID: 31850535 DOI: 10.1111/pce.13703] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2019] [Revised: 11/11/2019] [Accepted: 12/03/2019] [Indexed: 05/27/2023]
Abstract
Climate change threatens food security, and plant science researchers have investigated methods of sustaining crop yield under drought. One approach has been to overproduce abscisic acid (ABA) to enhance water use efficiency. However, the concomitant effects of ABA overproduction on plant vascular system functioning are critical as it influences vulnerability to xylem hydraulic failure. We investigated these effects by comparing physiological and hydraulic responses to water deficit between a tomato (Solanum lycopersicum) wild type control (WT) and a transgenic line overproducing ABA (sp12). Under well-watered conditions, the sp12 line displayed similar growth rate and greater water use efficiency by operating at lower maximum stomatal conductance. X-ray microtomography revealed that sp12 was significantly more vulnerable to xylem embolism, resulting in a reduced hydraulic safety margin. We also observed a significant ontogenic effect on vulnerability to xylem embolism for both WT and sp12. This study demonstrates that the greater water use efficiency in the tomato ABA overproducing line is associated with higher vulnerability of the vascular system to embolism and a higher risk of hydraulic failure. Integrating hydraulic traits into breeding programmes represents a critical step for effectively managing a crop's ability to maintain hydraulic conductivity and productivity under water deficit.
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Affiliation(s)
- Laurent J Lamarque
- BIOGECO, INRA, Univ. Bordeaux, Pessac, France
- EGFV, Bordeaux-Sciences Agro, INRA, Univ. Bordeaux, ISVV, Villenave d'Ornon, France
| | | | - Haley Toups
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada
| | | | | | - Eric Badel
- INRA, PIAF, Université Clermont-Auvergne, Clermont-Ferrand, France
| | | | | | - Hervé Cochard
- INRA, PIAF, Université Clermont-Auvergne, Clermont-Ferrand, France
| | - Steven Jansen
- Institute of Systematic Botany and Ecology, Ulm University, Ulm, Germany
| | - Andrew King
- Synchrotron SOLEIL, Gif-sur-Yvette Cedex, France
| | | | - Jérôme Pouzoulet
- EGFV, Bordeaux-Sciences Agro, INRA, Univ. Bordeaux, ISVV, Villenave d'Ornon, France
| | - Grant R Cramer
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada
| | - Andrew J Thompson
- Cranfield Soil an Agrifood Institute, Cranfield University, Bedfordshire, UK
| | - Gregory A Gambetta
- EGFV, Bordeaux-Sciences Agro, INRA, Univ. Bordeaux, ISVV, Villenave d'Ornon, France
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41
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Martignago D, Rico-Medina A, Blasco-Escámez D, Fontanet-Manzaneque JB, Caño-Delgado AI. Drought Resistance by Engineering Plant Tissue-Specific Responses. FRONTIERS IN PLANT SCIENCE 2020; 10:1676. [PMID: 32038670 PMCID: PMC6987726 DOI: 10.3389/fpls.2019.01676] [Citation(s) in RCA: 49] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2019] [Accepted: 11/28/2019] [Indexed: 05/18/2023]
Abstract
Drought is the primary cause of agricultural loss globally, and represents a major threat to food security. Currently, plant biotechnology stands as one of the most promising fields when it comes to developing crops that are able to produce high yields in water-limited conditions. From studies of Arabidopsis thaliana whole plants, the main response mechanisms to drought stress have been uncovered, and multiple drought resistance genes have already been engineered into crops. So far, most plants with enhanced drought resistance have displayed reduced crop yield, meaning that there is still a need to search for novel approaches that can uncouple drought resistance from plant growth. Our laboratory has recently shown that the receptors of brassinosteroid (BR) hormones use tissue-specific pathways to mediate different developmental responses during root growth. In Arabidopsis, we found that increasing BR receptors in the vascular plant tissues confers resistance to drought without penalizing growth, opening up an exceptional opportunity to investigate the mechanisms that confer drought resistance with cellular specificity in plants. In this review, we provide an overview of the most promising phenotypical drought traits that could be improved biotechnologically to obtain drought-tolerant cereals. In addition, we discuss how current genome editing technologies could help to identify and manipulate novel genes that might grant resistance to drought stress. In the upcoming years, we expect that sustainable solutions for enhancing crop production in water-limited environments will be identified through joint efforts.
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Affiliation(s)
| | | | | | | | - Ana I. Caño-Delgado
- Department of Molecular Genetics, Centre for Research in Agricultural Genomics (CRAG) CSIC-IRTA-UAB-UB, Barcelona, Spain
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42
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Trichoderma parareesei Favors the Tolerance of Rapeseed (Brassica napus L.) to Salinity and Drought Due to a Chorismate Mutase. AGRONOMY-BASEL 2020. [DOI: 10.3390/agronomy10010118] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Both drought and salinity represent the greatest plant abiotic stresses in crops. Increasing plant tolerance against these environmental conditions must be a key strategy in the development of future agriculture. The genus of Trichoderma filament fungi includes several species widely used as biocontrol agents for plant diseases but also some with the ability to increase plant tolerance against abiotic stresses. In this sense, using the species T. parareesei and T. harzianum, we have verified the differences between the two after their application in rapeseed (Brassica napus) root inoculation, with T. parareesei being a more efficient alternative to increase rapeseed productivity under drought or salinity conditions. In addition, we have determined the role that T. parareesei chorismate mutase plays in its ability to promote tolerance to salinity and drought in plants by increasing the expression of genes related to the hormonal pathways of abscisic acid (ABA) under drought stress, and ethylene (ET) under salt stress.
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43
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Conesa MÀ, Fullana-Pericàs M, Granell A, Galmés J. Mediterranean Long Shelf-Life Landraces: An Untapped Genetic Resource for Tomato Improvement. FRONTIERS IN PLANT SCIENCE 2020; 10:1651. [PMID: 31998340 PMCID: PMC6965163 DOI: 10.3389/fpls.2019.01651] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2019] [Accepted: 11/22/2019] [Indexed: 05/31/2023]
Abstract
The Mediterranean long shelf-life (LSL) tomatoes are a group of landraces with a fruit remaining sound up to 6-12 months after harvest. Most have been selected under semi-arid Mediterranean summer conditions with poor irrigation or rain-fed and thus, are drought tolerant. Besides the convergence in the latter traits, local selection criteria have been very variable, leading to a wide variation in fruit morphology and quality traits. The different soil characteristics and agricultural management techniques across the Mediterranean denote also a wide range of plant adaptive traits to different conditions. Despite the notorious traits for fruit quality and environment adaptation, the LSL landraces have been poorly exploited in tomato breeding programs, which rely basically on wild tomato species. In this review, we describe most of the information currently available for Mediterranean LSL landraces in order to highlight the importance of this genetic resource. We focus on the origin and diversity, the main selective traits, and the determinants of the extended fruit shelf-life and the drought tolerance. Altogether, the Mediterranean LSL landraces are a very valuable heritage to be revalued, since constitutes an alternative source to improve fruit quality and shelf-life in tomato, and to breed for more resilient cultivars under the predicted climate change conditions.
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Affiliation(s)
- Miquel À. Conesa
- Department Biologia-INAGEA, Universitat de les Illes Balears, Balearic Islands, Spain
| | - Mateu Fullana-Pericàs
- Department Biologia-INAGEA, Universitat de les Illes Balears, Balearic Islands, Spain
| | - Antonio Granell
- Instituto de Biología Molecular y Celular de Plantas, CSIC-UPV, Valencia, Spain
| | - Jeroni Galmés
- Department Biologia-INAGEA, Universitat de les Illes Balears, Balearic Islands, Spain
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44
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Selection and functional identification of a synthetic partial ABA agonist, S7. Sci Rep 2020; 10:4. [PMID: 31913304 PMCID: PMC6949257 DOI: 10.1038/s41598-019-56343-9] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2019] [Accepted: 12/03/2019] [Indexed: 11/20/2022] Open
Abstract
The stress hormone abscisic acid (ABA) helps plants to survive under abiotic stresses; however, its use as an agrochemical is limited by its chemical instability and expense. Here, we report the development of an in vivo screening system to isolate chemicals able to induce ABA signalling responses in rice (Oryza sativa) protoplasts. This system consists of an ABA-hypersensitive synthetic promoter containing ABRE and DRE motifs driving a luciferase reporter gene. After efficiently transfecting rice protoplasts with this construct, we screened chemicals library with a similar molecular weight and chemical structure to ABA and identified one chemical, S7, that induced ABA signalling by mediating interactions between the group I and II OsPYL receptors and certain OsPP2CAs in a yeast two-hybrid assay. In an in vitro pulldown assay, S7 was found to mediate a weak interaction between OsPYL5/8 and various OsPP2CAs. S7 treatments did not affect seedling growth or seed germination, but could reduce water loss. Rice seedlings treated with S7 exhibited transcriptome profiles that partially overlapped those treated with ABA. Taken together, we concluded that S7 is a new partial ABA agonist, which has potential use in future dissections of ABA signalling and as an agrochemical.
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Czajkowska BI, Finlay CM, Jones G, Brown TA. Diversity of a cytokinin dehydrogenase gene in wild and cultivated barley. PLoS One 2019; 14:e0225899. [PMID: 31805120 PMCID: PMC6894797 DOI: 10.1371/journal.pone.0225899] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2019] [Accepted: 11/14/2019] [Indexed: 01/09/2023] Open
Abstract
The cytokinin dehydrogenase gene HvCKX2.1 is the regulatory target for the most abundant heterochromatic small RNAs in drought-stressed barley caryopses. We investigated the diversity of HvCKX2.1 in 228 barley landraces and 216 wild accessions and identified 14 haplotypes, five of these with ten or more members, coding for four different protein variants. The third largest haplotype was abundant in wild accessions (51 members), but absent from the landrace collection. Protein structure predictions indicated that the amino acid substitution specific to haplotype 3 could result in a change in the functional properties of the HvCKX2.1 protein. Haplotypes 1–3 have overlapping geographical distributions in the wild population, but the average rainfall amounts at the collection sites for haplotype 3 plants are significantly higher during November to February compared to the equivalent data for plants of haplotypes 1 and 2. We argue that the likelihood that haplotype 3 plants were excluded from landraces by sampling bias that occurred when the first wild barley plants were taken into cultivation is low, and that it is reasonable to suggest that plants with haplotype 3 are absent from the crop because these plants were less suited to the artificial conditions associated with cultivation. Although the cytokinin signalling pathway influences many aspects of plant development, the identified role of HvCKX2.1 in the drought response raises the possibility that the particular aspect of cultivation that mitigated against haplotype 3 relates in some way to water utilization. Our results therefore highlight the possibility that water utilization properties should be looked on as a possible component of the suite of physiological adaptations accompanying the domestication and subsequent evolution of cultivated barley.
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Affiliation(s)
- Beata I. Czajkowska
- Department of Earth and Environmental Sciences, Manchester Institute of Biotechnology, University of Manchester, Manchester, England, United Kingdom
| | - Conor M. Finlay
- Lydia Becker Institute of Immunology and Inflammation, School of Biological Sciences, University of Manchester, Manchester, England, United Kingdom
| | - Glynis Jones
- Department of Archaeology, University of Sheffield, Northgate House, West Street, Sheffield, England, United Kingdom
| | - Terence A. Brown
- Department of Earth and Environmental Sciences, Manchester Institute of Biotechnology, University of Manchester, Manchester, England, United Kingdom
- * E-mail:
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Bailey-Serres J, Parker JE, Ainsworth EA, Oldroyd GED, Schroeder JI. Genetic strategies for improving crop yields. Nature 2019; 575:109-118. [PMID: 31695205 PMCID: PMC7024682 DOI: 10.1038/s41586-019-1679-0] [Citation(s) in RCA: 481] [Impact Index Per Article: 96.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2019] [Accepted: 09/16/2019] [Indexed: 12/31/2022]
Abstract
The current trajectory for crop yields is insufficient to nourish the world's population by 20501. Greater and more consistent crop production must be achieved against a backdrop of climatic stress that limits yields, owing to shifts in pests and pathogens, precipitation, heat-waves and other weather extremes. Here we consider the potential of plant sciences to address post-Green Revolution challenges in agriculture and explore emerging strategies for enhancing sustainable crop production and resilience in a changing climate. Accelerated crop improvement must leverage naturally evolved traits and transformative engineering driven by mechanistic understanding, to yield the resilient production systems that are needed to ensure future harvests.
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Affiliation(s)
- Julia Bailey-Serres
- Center for Plant Cell Biology and Department of Botany and Plant Sciences, University of California Riverside, Riverside, CA, USA.
- Institute of Environmental Biology, Utrecht University, Utrecht, The Netherlands.
| | - Jane E Parker
- Department of Plant-Microbe Interactions, Max Planck Institute for Plant Breeding Research and Cluster of Excellence on Plant Sciences (CEPLAS), Cologne, Germany
| | - Elizabeth A Ainsworth
- Global Change and Photosynthesis Research Unit, Agricultural Research Service, US Department of Agriculture, University of Illinois at Urbana-Champaign, Urbana, IL, USA
- Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | | | - Julian I Schroeder
- Cell and Developmental Biology Section, Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA.
- Food and Fuel for the 21st Century, University of California San Diego, La Jolla, CA, USA.
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Sadras VO. Effective Phenotyping Applications Require Matching Trait and Platform and More Attention to Theory. FRONTIERS IN PLANT SCIENCE 2019; 10:1339. [PMID: 31695718 PMCID: PMC6817593 DOI: 10.3389/fpls.2019.01339] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2019] [Accepted: 09/25/2019] [Indexed: 05/06/2023]
Affiliation(s)
- Victor O. Sadras
- South Australia Research and Development Institute, Adelaide, South Australia, Australia
- School of Agriculture, Food and Wine, The University of Adelaide, Australia
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Zhang X, Wei X, Wang M, Zhu X, Zhao Y, Wei F, Xia Z. Overexpression of NtabDOG1L promotes plant growth and enhances drought tolerance in Nicotiana tabacum. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2019; 287:110186. [PMID: 31481202 DOI: 10.1016/j.plantsci.2019.110186] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2019] [Revised: 07/04/2019] [Accepted: 07/06/2019] [Indexed: 05/02/2023]
Abstract
Drought is one of the major environmental stresses limiting crop growth and production. It is very important to exploit and utilize drought-tolerance genes to improve crop drought-resistance. In this study, we identified two homoeologs of a Nicotiana tabacum (Ntab) DELAY OF GERMINATION (DOG) 1 like gene, named as NtabDOG1L-T and NtabDOG1L-S, respectively. The NtabDOG1L genes were preferentially expressed in roots and their expression levels were induced by polyethylene glycol, high salt, cold, and abscisic acid treatments. Subcellular localization results indicated that NtabDOG1L-T was localized in the nucleus, cytoplasm and cell membrane. Overexpression of NtabDOG1L-T in tobacco resulted in roots growth enhancement in transgenic plants. Furthermore, overexpression of NtabDOG1L-T enhanced drought stress tolerance in transgenic tobacco. The transgenic tobacco lines exhibited lower leaf water loss and electrolyte leakage, lower content of malondialdehyde and reactive oxygen species (ROS), and higher antioxidant enzymes activities after drought treatment when compared with wild type (WT) plants. In addition, the expression levels of several genes encoding key antioxidant enzymes and drought-related proteins were higher in the transgenic plants than in the WT plants under drought stress. Taken together, our results showed that NtabDOG1L functions as a novel regulator that improves plant growth and drought tolerance in tobacco.
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Affiliation(s)
- Xiaoquan Zhang
- College of Tobacco Science, Henan Agricultural University, Zhengzhou 450002, China
| | - Xing Wei
- College of Tobacco Science, Henan Agricultural University, Zhengzhou 450002, China
| | - Meiping Wang
- Library of Henan Agricultural University, Zhengzhou 450002, China
| | - Xianfeng Zhu
- School of Life Sciences, Henan University, Kaifeng 475004, China
| | - Yue Zhao
- College of Life Science, Henan Agricultural University, Zhengzhou 450002, China.
| | - Fengjie Wei
- College of Tobacco Science, Henan Agricultural University, Zhengzhou 450002, China; Henan Institute of Tobacco Science, Zhengzhou 450002, China.
| | - Zongliang Xia
- College of Life Science, Henan Agricultural University, Zhengzhou 450002, China.
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49
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Expression induction of a class of RD26 genes by drought and salinity stresses in maize. Biologia (Bratisl) 2019. [DOI: 10.2478/s11756-019-00286-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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50
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Genome-level responses to the environment: plant desiccation tolerance. Emerg Top Life Sci 2019; 3:153-163. [DOI: 10.1042/etls20180139] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2018] [Revised: 03/12/2019] [Accepted: 03/15/2019] [Indexed: 01/01/2023]
Abstract
Abstract
Plants being sessile organisms are well equipped genomically to respond to environmental stressors peculiar to their habitat. Evolution of plants onto land was enabled by the ability to tolerate extreme water loss (desiccation), a feature that has been retained within genomes but not universally expressed in most land plants today. In the majority of higher plants, desiccation tolerance (DT) is expressed only in reproductive tissues (seeds and pollen), but some 135 angiosperms display vegetative DT. Here, we review genome-level responses associated with DT, pointing out common and yet sometimes discrepant features, the latter relating to evolutionary adaptations to particular niches. Understanding DT can lead to the ultimate production of crops with greater tolerance of drought than is currently realized.
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