C:N ratio shaped both taxonomic and functional structure of microbial communities in livestock and poultry breeding wastewater treatment reactor

An efficient strategy for BDD electrode drive electro-catalysis triggering active species on lincomycin and antibiotic resistance genes removal: Electron transfer based on calculation modeling

Identifying the degradation pathway and the final by-products is essential, as their ecological risks are pertinent to the advancement of this technology and its potential application in practical environmental pollution treatment. Elucidating the reaction mechanisms of the degradation system represents the most effective strategy for controlling this process. This study thoroughly revealed that indirect oxidation predominates throughout the electrochemical system, while direct oxidation serves a significant auxiliary role under the synergistic influence. It elucidates the critical importance of electron transfer behavior at the electrode surface for pollutant degradation and unveil potential mechanisms underlying primary degradation reactions via integrating charge density differences and Bader atomic charge analysis. In situ electrochemical infrared spectroscopy (In situ EC-FTIR) and density functional calculation (DFT) were used to analyze the final by-product generation path. It further elucidated the correlation between antibiotic resistance gene (ARGs) and binding strength among base pairs. The oxidative stress process of antibiotic resistance bacteria (ARB) was explained in detail. To comprehensively assess the impact of electrochemical treatment on environmental microbial communities, combined horizontal gene transfer (HGT) experiments were conducted to confirm that electrolytically treated wastewater does not induce ecological stress effects on microorganisms. Finally, a small cyclic electrochemical system was employed to evaluate both ecological impacts and economic benefits associated with wastewater treatment, thereby providing a novel theoretical framework for this domain.

Effect of hydraulic retention time on the nitrogen removal performance of pure biofilm rotating biological contactor system inoculated with heterotrophic nitrification-aerobic denitrification bacteria and its corresponding mechanism

The traditional activated sludge biofilm system struggles with poor removal performance and long hydraulic retention time (HRT) in treating high ammonia nitrogen (NH4+-N) wastewater. To solve these problems, this study introduced a pure heterotrophic nitrification-aerobic denitrification (HN-AD) biofilm system which HN-AD bacteria were inoculated in the rotating biological contactor (PH-RBC), with free microorganisms discharged after biofilm formation. Under short HRT (12 h), PH-RBC exhibited 29.23 % and 31.03 % higher NH4+-N and total nitrogen (TN) removal than pure activated sludge biofilm RBC (PS-RBC) (the influent NH4+-N was 505 ± 45 mg/L). Flavobacterium and Azoarcus were crucial for nitrogen removal in the PH-RBC. Metabolic analysis revealed that genes CS and IDH3 are crucial for carbon metabolism, with dissimilatory nitrate reduction dominates nitrogen metabolism. Bugbase prediction indicated that decreasing HRT increased the presence of Potentially Pathogenic. This study provides a theoretical basis for using pure biofilm system in high NH4+-N wastewater treatment.

Dynamics of Bacterial Communities and Their Relationship with Nutrients in a Full-Scale Shrimp Recirculating Aquaculture System in Brackish Water

Microbial communities in RASs play a critical role in maintaining water quality and supporting shrimp growth, development, and health. However, their dynamics, particularly in commercial systems, remain poorly understood. This study aimed to improve the understanding of bacterial community dynamics during shrimp culture in RASs. High-throughput amplicon sequencing of the 16S rRNA, PERMANOVA, PCoA, and other statistical analyses were used to investigate the bacterial dynamics. The entire succession process was categorized into three distinct phases, the initial, middle, and final phases, during the shrimp rearing in RASs to elucidate the spatial-temporal dynamics of the bacterial communities. Alpha diversity indicates the evenness of the bacterial community increased in the initial phase, while richness peaked in the middle phase. Notable taxonomic and functional groups within the bacterial community contributed to significant variations in the relative abundance of community composition across these phases. The dominant bacterial phyla in both water and biofilm included Proteobacteria, Actinobacteriota, Bacteroidota, and Patescibacteria. The dominant orders in both environments were Corynebacteriales, Burkholderiales, Rhodobacterales, Flavobacteriales, Saccharimonadales, and Micrococcales. Key bacterial taxa such as Pseudomonas, Mycobacterium, and Hydrogenophaga were critical for microbial community assembly, nutrient cycling, biodegradation, and water quality monitoring. Nitrite, ammonium, and nitrate were positively correlated with Mycobacterium, Rheinheimera, Taeseokela, and Thermomonas, while negatively correlated with the Cloacibacterium community composition. These findings expand our understanding of the underlying mechanisms of bacterial community succession in RASs with intensive rearing of shrimp and suggest that stabilizing environmental variables could be a useful management tool for promoting and maintaining healthy aquaculture environments.

Differential responses of plant and microbial respiration to extreme precipitation and drought during spring and summer in the Eurasian meadow steppe

Increasing extreme precipitation and drought events along changes in their seasonal patterns due to climate change are expected to have profound consequences for carbon cycling. However, how these climate extremes impact ecosystem respiration (Reco) and whether these impacts differ between seasons remain unclear. Here, we reveal the responses of Reco and its components to extreme precipitation and drought in spring and summer by conducting a five-year manipulative experiment in a temperate meadow steppe. Based on a 5-year average, the seasonal mean values (±SE) of Reco, Rh, Rroot, Rabg and Rplant significantly increased (p < 0.01) under both extreme precipitation treatments: wet spring (WSP) and wet summer (WSU), and significantly decreased (p < 0.01) under both extreme drought treatments: dry spring (DSP) and dry summer (DSU), except in Rabg under DSU, which remained comparable to the control. The sensitivity of Reco, Rh, Rroot and Rplant to extreme precipitation was significantly higher in spring than in summer. On average, Rplant was the primary contributor of Reco, accounting for 37.18% and 38.31% of the total across all its components under WSP and WSU, respectively during the growing season over the five study years. Moreover, linear models revealed Rplant explained 87% of the variance in Reco. Our findings indicate that future changes in precipitation events, particularly extreme precipitation may lead to increased carbon release from ecosystems, largely driven by enhanced plant respiration rather than microbial respiration. However, due to this study focused solely on respiration and did not measure photosynthesis, the findings represent only the carbon release processes and do not account for potential carbon uptake by plants during the same conditions. These emergent identified contribution to ecosystem respiration provide valuable insights for improving model benchmarks to better predict ecosystem respiration responses to extreme climate in specified season.

Effects of different quaternary ammonium compounds on intracellular and extracellular resistance genes in nitrification systems under the pre-contamination of benzalkyl dimethylammonium compounds

As the harm of benzalkyl dimethylammonium compounds (BACs) on human health and environment was discovered, alkyltrimethyl ammonium compound (ATMAC) and dialkyldimethyl ammonium compound (DADMAC), which belong to quaternary ammonium compounds (QACs), were likely to replace BACs as the main disinfectants. This study simulated the iterative use of QACs to explore their impact on resistance genes (RGs) in nitrification systems pre-contaminated by BACs. ATMAC could initiate and maintain partial nitrification. DADMAC generated higher levels of reactive oxygen species and lactate dehydrogenase, leading to increased biological toxicity in bacteria. The abundance of intracellular RGs of sludge was higher with the stress of QACs. DADMAC also induced higher extracellular polymeric substance secretion. Moreover, it facilitated the transfer of RGs from sludge to water, with ATMAC disseminating RGs through si-tnpA-04 and DADMAC through si-intI1. Sediminibacterium might be potential hosts for RGs. This study offered insights into disinfectant usage in the post-COVID-19 era.

Characteristics and Mechanism of Ammonia Nitrogen Removal by Heterotrophic Nitrification Bacterium Klebsiella pneumoniae LCU1 and Its Application in Wastewater Treatment

In this study, a novel strain exhibiting heterotrophic nitrification was screened; subsequently, the strain was identified as Klebsiella pneumoniae LCU1 using 16S rRNA gene sequencing. The aim of the study was to investigate the effects of external factors on the NH4+-N removal efficiency of strain LCU1 in order to elucidate the optimal conditions for NH4+-N removal by the strain and improve the removal efficiency. The findings indicated that the NH4+-N removal efficiency of the strain exceeded 80% under optimal conditions (sodium succinate carbon source, C/N ratio of 10, initial pH of 8.0, temperature of 30 °C, and speed of 180 rpm). The genome analysis of strain LCU1 showed that key genes involved in nitrogen metabolism, including narGHI, nirB, nxrAB, and nasAB, were successfully annotated; hao and amo were absent, but the nitrogen properties analysis determined that the strain had a heterotrophic nitrification ability. After 120 h, the NH4+-N removal efficiency of strain LCU1 was 34.5% at a high NH4+-N concentration of 2000 mg/L. More importantly, the NH4+-N removal efficiency of this strain was above 34.13% at higher Cu2+, Mn2+, and Zn2+ ion concentrations. Furthermore, strain LCU1 had the highest NH4+-N removal efficiency of 34.51% for unsterilised (LCU1-OC) aquaculture wastewater. This suggests that with intensive colonisation treatment, the strain has promising application potential in real wastewater treatment.

Nutritional conditions affecting of selenium nanoparticles synthesized by Fusarium oxysporum (CCASU-2023-F9), and their biological activities against mycotoxin-producing fungi isolated from animal feed

One of the most promising biologically based nanomanufacturing processes is the production of selenium nanoparticles (SeNPs) by fungi. The use of these biosynthesized nanoparticles in agricultural practices has emerged as a new approach for controlling pathogen growth and mycotoxin production. In the present study, different chemical and physical parameters were investigated for the growth of Fusarium oxysporum (CCASU-2023-F9) to increase selenite reduction and obtain the highest yield of selenium nanoparticles (SeNPs). Fusarium oxysporum (CCASU-2023-F9) exhibited tolerance to up to 1 mM sodium selenite (Na2SeO3), accompanied by red coloration of the medium, which suggested the reduction of selenite and the formation of selenium nanoparticles (SeNPs). Reduced selenite was quantified using inductively coupled plasma‒mass spectrometry (ICP-MS), and the results revealed that Fusarium oxysporum (CCASU-2023-F9) is able to transform 45.5% and 50.9% of selenite into elemental selenium by using fructose and urea as the best carbon and nitrogen sources, respectively. An incubation temperature of 30 °C was the best physical condition at which 67.4% of the selenite was transformed into elemental selenium. The results also indicated that pH 7 was the optimum pH, as it displayed 27.2% selenite reduction with a net dry weight of 6.8 mg/mL. Increasing the concentration of sulfate resulted in a significant increase in selenite reduction, as it reached a maximum value of 75.3% at 0.15% g/ml sulfate. The maximum reduction in sodium selenite content was 85.2% at a C/N ratio of 2:1. The biosynthesized SeNPs exhibited antifungal activity against several fungi, such as Aspergillus flavus, Aspergillus niger, and Fusarium oxysporum, that were isolated from animal and poultry feed. Elevated SeNP concentrations (10500 ppm) significantly inhibited fungal growth. SeNPs at a concentration of 5000 ppm inhibited aflatoxin production (B1, B2, G1, and G2) by A. flavus, in addition to inhibiting mycotoxin production (T2 toxin, fumonisin B1, zearaleone, fusarin C, and moniliformin) by F. oxysporum. In conclusion, the results revealed favorable nutritional conditions for the maximum production of SeNPs by Fusarium oxysporum (CCASU-2023-F9) and indicated the marked inhibitory effect of SeNPs on mycotoxins that contaminate animal feed, causing serious consequences for animal health, and that lead to improving the quality of commercially produced animal feed. The obtained results can serve as a basis for commercial applicability.

Efficient and sustainable removal of linear alkylbenzene sulfonate in a membrane biofilm: Oxygen supply dosage impacts mineralization pathway

Linear alkylbenzene sulfonate (LAS) can be thoroughly mineralized within sufficient oxygen (O2), but which is energy intensive and may causes serious foaming problem. Although cometabolism can achieve efficient LAS removal within a wide range of O2 dosages, how O2 dosage systematically affects LAS metabolic pathway is still unclear. Here, membrane aerated biofilm reactor (MABR) enabled accurate O2 delivery and bulk dissolved oxygen (DO) control. MABR achieved efficient removal of LAS (>96.4 %), nitrate (>97.8 %) and total nitrogen (>96.2 %) at the three target DO conditions. At high DO condition (0.6 mg/L), LAS was efficiently removed by aerobic mineralization (predominant) coupled with aerobic denitrification biodegradation with the related functional enzymes. Pseudomonas, Flavobacterium, Hydrogenophaga, and Pseudoxanthomonas were dominant genus contributing to four possible LAS aerobic metabolic pathways. As O2 dosage reduced to only 29.7 % of the demand for LAS mineralization, O2 facilitated LAS activation, benzene-ring cleavage and a portion of respiration. NO3 --N respiration-induced anaerobic denitrification also contributed to ring-opening and organics mineralization. Desulfomicrobium and Desulfonema related two possible anaerobic metabolic pathways also contributed to LAS removal. The findings provide a promising strategy for achieving low-cost high LAS-containing greywater treatment.

Insights into the removal of antibiotics from livestock and aquaculture wastewater by algae-bacteria symbiosis systems

With the burgeoning growth of the livestock and aquaculture industries, antibiotic residues in treated wastewater have become a serious ecological threat. Traditional biological wastewater treatment technologies-while effective for removing conventional pollutants, such as organic carbon, ammonia and phosphate-struggle to eliminate emerging contaminants, notably antibiotics. Recently, the use of microalgae has emerged as a sustainable and promising approach for the removal of antibiotics due to their non-target status, rapid growth and carbon recovery capabilities. This review aims to analyse the current state of antibiotic removal from wastewater using algae-bacteria symbiosis systems and provide valuable recommendations for the development of livestock/aquaculture wastewater treatment technologies. It (1) summarises the biological removal mechanisms of typical antibiotics, including bioadsorption, bioaccumulation, biodegradation and co-metabolism; (2) discusses the roles of intracellular regulation, involving extracellular polymeric substances, pigments, antioxidant enzyme systems, signalling molecules and metabolic pathways; (3) analyses the role of treatment facilities in facilitating algae-bacteria symbiosis, such as sequencing batch reactors, stabilisation ponds, membrane bioreactors and bioelectrochemical systems; and (4) provides insights into bottlenecks and potential solutions. This review offers valuable information on the mechanisms and strategies involved in the removal of antibiotics from livestock/aquaculture wastewater through the symbiosis of microalgae and bacteria.

Metagenomic insights into effects of carbon/nitrogen ratio on microbial community and antibiotic resistance in moving bed biofilm reactor

This study investigated the effects of carbon/nitrogen (C/N) ratio on microbial community in moving bed biofilm reactor (MBBR) using metagenomic analysis, and the dynamic changes of relevant antibiotic resistance genes (ARGs) were also analyzed. The results showed that under low C/N ratio, MBBR exhibited average removal rates of 98.41 % for ammonia nitrogen and 75.79 % for total nitrogen. Metagenomic analysis showed low C/N ratio altered the structure of biofilm and water microbiota, resulting in the detachment of bacteria such as Actinobacteria from biofilm into water. Furthermore, sulfamethazine (SMZ)-resistant bacteria and related ARGs were released into water under low C/N ratio, which lead to the increase of SMZ resistance rate to 90%. Moreover, most dominant genera are potential hosts for both nitrogen cycle related genes and ARGs. Specifically, Nitrosomonas that carried gene sul2 might be released from biofilm into water. These findings implied the risks of antibiotic resistance dissemination in MBBR under low C/N ratio.

Combined effect of zinc and cadmium ions on nitrification performance during the biological nitrogen removal of simulated livestock breeding wastewater

Zinc and cadmium ions are usually found in livestock breeding wastewater, and the mixed ions will have an impact on the biological nitrogen removal. Nitrification performance plays an important role in biological nitrogen removal. In order to investigate the combined effect of zinc and cadmium ions on nitrification performance and to reveal the interactions between zinc and cadmium ions, three concentration ratios of zinc and cadmium ions, as well as 18 different concentration gradients were designed with the direct equipartition ray and the dilution factor method. The effect of pollutants on the nitrification performance of biological nitrogen removal was analyzed by the nonlinear regression equation, and the concentration-addition model was conducted to probe into the relationship between the mixed pollutants and the nitrification performance. The results showed that the effect on nitrification performance increased significantly with the increase of reaction duration and pollutant concentration, which indicated that the effects are concentration-dependent and time-dependent. The concentration-addition model suggested that the interactions between zinc and cadmium ions with different concentration ratios were mainly antagonistic, and as the percentage of cadmium ions in the mixtures increased, the antagonism between the mixtures became stronger. This study will provide a relevant theoretical basis for the regulation of the ratios and concentrations of heavy metal ions during the biological treatment of livestock breeding wastewater.

Impact analysis of hydraulic residence time and dissolved oxygen on performance efficiency and microbial community in N, N-dimethylformamide wastewater treated by an AnSBR-ASBR

Suitable operating parameters are one of the key factors to efficient and stable biological wastewater treatment of N, N-dimethylformamide (DMF) wastewater. In this study, an improved AnSBR-ASBR reactor (anaerobic sequencing batch reactor, AnSBR, and aerobic SBR, ASBR, run in series) was used to investigated the effects of operating conditions such as hydraulic residence time (HRT), AnSBR stirring speed and ASBR dissolved oxygen (DO) for DMF wastewater treatment. When HRT decreased from 24 h to 12 h, the average removal rates of COD by the AnSBR were 34.59% and 39.54%, respectively. Meanwhile, the removal rate of NH4+-N by ASBR decreased from 88.38% to 62.81%. The DMF removal rate reached the best at 18 h and the expression of dehydrogenase was the highest in the AnSBR. The abundance of Megasphaera, the dominant sugar-degrading bacteria in the AnSBR, continued to decline due to the decrease of HRT. The relative abundance of Methanobacterium gradually increased to 80.2% with the decrease of HRT and that hydrotrophic methanogenesis dominated the methanogenic process. The HRT decrease promoted butyrate and pyruvate metabolism in anaerobic sludge, but the proportion of glycolysis and methane metabolism decreased. The AnSBR-ASBR reactor had the best operation performance when HRT was 18 h, AnSBR speed was 220 r/min, and ASBR DO content was 3-4 mg/L. This study provided an effective reference for the reasonable selection of operating parameters in the treatment of DMF-containing wastewater by the AnSBR-ASBR.

Efficient rural sewage treatment with manganese sand-pyrite soil infiltration systems: Performance, mechanisms, and emissions reduction

The application of soil infiltration systems (SISs) in rural domestic sewage (RDS) is limited due to suboptimal denitrification resulting from factors such as low C/N (<5). This study introduced filler-enhanced SISs and investigated parameter impacts on pollutant removal efficiency and greenhouse gas (GHG) emission reduction. The results showed that Mn sand-pyrite SISs, with hydraulic load ratios of 0.003 m3/m2·h and dry-wet ratios of 3:1, achieved excellent removal efficiency of COD (92.7 %), NH4+-N (95.8 %), and TN (76.4 %). Moreover, N2O and CH4 emission flux were 0.046 and 0.019 mg/m2·d, respectively. X-ray photoelectron spectroscopy showed that the relative concentrations of Mn(Ⅱ) in Mn sand and Fe(Ⅲ) and SO42- in pyrite increased after the experiment. High-throughput sequencing indicated that denitrification was mainly performed by Thiobacillus. This study demonstrated that RDS treatment using the enhanced SIS resulted in efficient denitrification and GHG reduction.

C:N:P stoichiometry of plants, soils, and microorganisms: Response to altered precipitation

Precipitation changes modify C, N, and P cycles, which regulate the functions and structure of terrestrial ecosystems. Although altered precipitation affects above- and belowground C:N:P stoichiometry, considerable uncertainties remain regarding plant-microbial nutrient allocation strategies under increased (IPPT) and decreased (DPPT) precipitation. We meta-analyzed 827 observations from 235 field studies to investigate the effects of IPPT and DPPT on the C:N:P stoichiometry of plants, soils, and microorganisms. DPPT reduced leaf C:N ratio, but increased the leaf and root N:P ratios reflecting stronger decrease of P compared with N mobility in soil under drought. IPPT increased microbial biomass C (+13%), N (+15%), P (26%), and the C:N ratio, whereas DPPT decreased microbial biomass N (-12%) and the N:P ratio. The C:N and N:P ratios of plant leaves were more sensitive to medium DPPT than to IPPT because drought increased plant N content, particularly in humid areas. The responses of plant and soil C:N:P stoichiometry to altered precipitation did not fit the double asymmetry model with a positive asymmetry under IPPT and a negative asymmetry under extreme DPPT. Soil microorganisms were more sensitive to IPPT than to DPPT, but they were more sensitive to extreme DPPT than extreme IPPT, consistent with the double asymmetry model. Soil microorganisms maintained stoichiometric homeostasis, whereas N:P ratios of plants follow that of the soils under altered precipitation. In conclusion, specific N allocation strategies of plants and microbial communities as well as N and P availability in soil critically mediate C:N:P stoichiometry by altered precipitation that need to be considered by prediction of ecosystem functions and C cycling under future climate change scenarios.

Cascade dams altered taxonomic and functional composition of bacterioplankton community at the regional scale

Dams are increasingly disrupting natural river systems, yet studies investigating their impact on microbial communities at regional scale are limited. Given the indispensable role of bacterioplankton in aquatic ecosystems, 16S rRNA gene sequencing was performed to explore how these communities respond to dam-influenced environmental changes at the regional scale in the Shaying River Basin. Our findings revealed that cascade dams create distinct environments, shaping bacterioplankton communities near the dams differently from those in natural rivers. In the upstream of the cascade dams, water quality was superior, while bacterioplankton community structure was simple with weak community interactions. In the midstream, nutrient and heavy metal content were increased, making bacterioplankton structures more susceptible to environmental changes. In the downstream of the cascade dams, water quality had a significant impact on the community and the bacterioplankton structures were highly complex. Additionally, environmental variables significantly influenced bacterioplankton functional groups. However, the response to these factors, as well as the interplay between functional and taxonomic diversity, varied markedly depending on the specific region of the cascade dams. We here delved into the effects of cascade dams on the taxonomic diversity and functional groups of bacterioplankton to provide a theoretical basis for segmentally regulating these dams.

Effects of successional sulfadiazine exposure on biofilm in moving bed biofilm reactor: Secretion of extracellular polymeric substances, community activity and functional gene expression

The effects of sulfadiazine (SDZ) on responses of biofilm in a moving bed biofilm reactor were explored with emphasis on the changes in extracellular polymeric substances (EPS) and functional genes. It was found that 3 to 10 mg/L SDZ reduced the protein (PN) and polysaccharide (PS) contents of EPS by 28.7%-55.1% and 33.3%-61.4%, respectively. The EPS maintained high ratio of PN to PS (10.3-15.1), and the major functional groups within EPS remained unaffected to SDZ. Bioinformatics analysis showed that SDZ significantly altered the community activity such as increased expression of s_Alcaligenes faecali. Totally, the biofilm held high SDZ removal rates, which were ascribed to the self-protection by secreted EPS, and genes levels upregulation of antibiotic resistance and transporter protein. Collectively, this study provides more details on the biofilm community exposure to an antibiotic and highlights the role of EPS and functional genes in antibiotic removal.

Simultaneous removal of refractory organic pollutants and nitrogen using electron shuttle suspended biofilm carriers in an integrated hydrolysis/acidification-anoxic/aerobic process

Azo dyes wastewater contains refractory pollutant and nitrogen, which threatens human health and ecological environment when discharged into environment directly. Electron shuttle (ES) is able to participate in the extracellular electron transfer, and thus enhances the removal efficiency of refractory pollutant. However, the continuous dosing of soluble ES would rise operation cost and cause contamination inevitably. In this study, a type of insoluble ES (carbonylated graphene oxide (C-GO)) was developed and melt blended into polyethylene (PE) to prepare novel C-GO-modified suspended carriers. Compared to those of conventional carrier (31.60%), the surface active sites of novel C-GO-modified carrier increased to 52.95%. An integrated hydrolysis/acidification (HA, filled with C-GO-modified carrier) - anoxic/aerobic (AO, filled with clinoptilolite-modified carrier) process was applied to remove azo dye acid red B (ARB) and nitrogen simultaneously. ARB removal efficiency was significantly improved in the reactor filled with C-GO-modified carriers (HA2) compared to the reactor filled with conventional PE carriers (HA1) or activated sludge (HA0). Total nitrogen (TN) removal efficiency of the proposed process increased by 25.95-32.64% compared to the reactor filled with activated sludge. Moreover, the intermediates of ARB were identified by liquid chromatograph-mass spectrometer (LC-MS), and the degradation pathway of ARB through ES was proposed. C-GO-modified carriers induced ARB-removal-related bacterial enrichment (such as Chloroflexi, Lactivibrio, Longilinea, Bacteroidales and Anaerolineaceae). Besides, the relative abundance of denitrifiers and nitrifiers in the AO reactor filled with clinoptilolite-modified carrier was increased by 11.60% compared with activated sludge. Copy numbers of genes related to membrane transport, carbon/energy metabolism and nitrogen metabolism increased significantly on the surface-modified carriers. This study proposed an efficient approach for simultaneous azo dyes and nitrogen removal, showing potential in actual application.

Pollutants removal, microbial community shift and oleic acid production in symbiotic microalgae-bacteria system

The functional interaction between microorganisms is key in symbiotic microalga-bacteria systems; however, evaluations of fungi and pathogenic microorganisms are not clear. In this study, the roles of three groups (i.e., microalgae-activated sludge (MAS), Microalgae, and activated sludge) in pollutant removal and biomass recovery were comparatively studied. The data implied that microalgal assimilation and bacterial heterotrophic degradation were the major approaches for degradation of nutrients and organic matter, respectively. According to 16S rRNA and internal transcribed spacer sequencing, the relative abundance of Rhodotorula increased remarkably, favoring nutrient exchange between the microalgae and bacteria. The abundances of two types of pathogenic genes (human pathogens and animal parasites) were reduced in the MAS system. The oleic acid content in the MAS system (51.2 mg/g) was 1.7 times higher than that in the Microalgae system. The results can provide a basis for practical application and resource utilization of symbiotic microalgae-bacteria systems.

Metagenomics analysis of microbial community distribution in large-scale and step-by-step purification system of swine wastewater

Biological treatment is one of the most widely used methods to treat swine wastewater in wastewater treatment plants. The microbial community plays an important role in the swine slurry treatment system. However, limited information is available regarding the correlation between pollutant concentration and dominant microbial community in swine wastewater. This work aimed to study the profiling of microbial communities and their abundance in the 40 M³/day large-scale and step-by-step treatment pools of swine wastewater. Metagenome sequencing was applied to study the changes of microbial community structure in biochemical reaction pools. The results showed that in the heavily polluted pools, it was mainly Proteobacteria, Cyanobacteria, Chlorella and other strains that could tolerate high concentration of ammonia nitrogen to remove nitrogen and absorb chemical oxygen demand (COD). In the moderately polluted pools, Nitrospirae, Actinobacteria and other strains further cooperated to purify swine wastewater. In the later stage, the emergence of Brachionus indicated the reduction of water pollution. The dominant microbes and their abundance changed with the purification of swine wastewater in different stages. Moreover, the dominant microflora of swine wastewater treatment pools at all levels reflected little difference in phylum classification level, while in genus classification level, the dominant microflora manifested great difference. Findings demonstrated that the microorganisms maintained ecological balance and absorbed the nutrients in the swine wastewater treatment pools, so as to play the role of purifying sewage. Therefore, the stepwise purification of swine wastewater can be realized by adding bacteria and microalgae of different genera.

Biochar raw material selection and application in the food chain: A review

As one of the largest carbon emitters, China promises to achieve carbon emissions neutrality by 2060. Various industries are developing businesses to reduce carbon emissions. As an important greenhouse gas emissions scenario, the reduction of carbon emissions in the food chain can be achieved by preparing the wastes into biochar. The food chain, as one of the sources of biochar, consists of production, processing and consumption, in which many wastes can be transferred into biochar. However, few studies use the food chain as the system to sort out the raw materials of biochar. A systematic review of the food chain application in serving as raw materials for biochar is helpful for further application of such technique, providing supportive information for the development of biochar preparation and wastes treating. In addition, there are many pollution sources in the food production process, such as agricultural contaminated soil and wastewater from livestock and aquatic, that can be treated on-site to achieve the goal of treating wastes with wastes within the food chain. This study focuses on waste resource utilization and pollution remediation in the food chain, summarizing the sources of biochar in the food chain and analyzing the feasibility of using waste in food chain to treat contaminated sites in the food chain and discussing the impacts of the greenhouse gas emissions. This review provides a reference for the resource utilization of waste and pollution reduction in the food chain.

Microbial composition and nitrogen removal pathways in a novel sequencing batch reactor integrated with semi-fixed biofilm carrier: evidence from a pilot study for low- and high-strength sewage treatment

The sequencing batch reactor (SBR) activated sludge process is a well-established technology for sewage treatment. One of the drawbacks of SBRs, however, total nitrogen (TN) removals is insufficient. By means of introducing four improvements, including semi-fixed biofilm carrier, sludge elevation mixing and change for the mode of influent and effluent, compliant standard for TN discharge was obtained in this novel SBR configuration during low- and high-strength sewage load. To illustrate the microbial compositions and functions of the attached biofilm on semi-fixed carrier and the suspended aggregates, as well as the nitrogen removal pathway, high throughput 16S rRNA gene amplicon sequencing, PICRUSt2 algorithm, and KEGG database were applied. The results revealed that (i) the microbial communities from suspended aggregates and biofilm samples were significantly different from each other; (ii) during low-strength sewage loads, TN removal was mainly by nitrification-denitrification. The suspended aggregates was responsible for denitrification, while the biofilm was focused on ammonium oxidation; (iii) during high-strength sewage loads, function of nitrate reductase from suspended aggregates was faded, and anammox and N assimilation by biofilm became dominant. Meanwhile, TN removal referring to the formation of L-glutamine via assimilation was the main pathway.

COD/TN ratios shift the microbial community assembly of a pilot-scale shortcut nitrification-denitrification process for biogas slurry treatment

In this study, effects of carbon to nitrogen (COD/TN) ratios of biogas slurry on shortcut nitrification-denitrification in a pilot-scale integrated fixed film activated sludge (IFAS) system were investigated. Lowering the COD/TN ratio from 11.7 to 6.2 exerted a negative impact on shortcut nitrification-denitrification performance. Accordingly, the NH₃-N and TN removal rates decreased from 94.4 to 91.2% and 92.3 to 85.9%, respectively. The dynamics of microbial assembly was analyzed by MiSeq sequencing, and the denitrifying functional genes were quantified by qPCR. The results showed that ammonia oxidizing bacteria and amoA gene were more abundant on the biofilm of oxic tank, indicating they play a key role in NH₃-N removal. Autotrophic, endogenous, and fast heterotrophic kinetics denitrifiers were coexisted and enriched in the IFAS system with a decreasing of COD/TN ratio. TN removal was mainly affected by denitrifiers (including Arenimonas, Acidovorax, and Thaurea) harboring narG and nirS genes. Canonical correspondence analysis proved that COD/TN ratio was the most critical factor driving the succession of microbial community. Dissolved oxygen (DO) and pH were found positively correlated with denitrifiers at low COD/TN ratio conditions. As a result, NH₃-N and TN removal were effectively enhanced when the DO level in the oxic tank of IFAS system was increased to 1.0-3.0 mg/L.

Partial Nitrification and Enhanced Biological Phosphorus Removal in a Sequencing Batch Reactor Treating High-Strength Wastewater

Complex and high levels of various pollutants in high-strength wastewaters hinder efficient and stable biological nutrient removal. In this study, the changes in pollutant removal performance and microbial community structure in a laboratory-scale anaerobic/aerobic sequencing batch reactor (SBR) treating simulated pre-fermented high-strength wastewater were investigated under different influent loading conditions. The results showed that when the influent chemical oxygen demand (COD), total nitrogen (TN), and orthophosphate (PO₄³⁻-P) concentrations in the SBR increased to 983, 56, and 20 mg/L, respectively, the COD removal efficiency was maintained above 85%, the TN removal efficiency was 64.5%, and the PO₄³⁻-P removal efficiency increased from 78.3% to 97.5%. Partial nitrification with simultaneous accumulation of ammonia (NH₄⁺-N) and nitrite (NO₂⁻-N) was observed, which may be related to the effect of high influent load on ammonia- and nitrite-oxidising bacteria. The biological phosphorus removal activity was higher when propionate was used as the carbon source instead of acetate. The relative abundance of glycogen accumulating organisms (GAOs) increased significantly with the increase in organic load, while Tetrasphaera was the consistently dominant polyphosphate accumulating organism (PAO) in the reactor. Under high organic loading conditions, there was no significant PAO–GAO competition in the reactor, thus the phosphorus removal performance was not affected.

Treatment of decentralized low-strength livestock wastewater using microcurrent-assisted multi-soil-layering systems: performance assessment and microbial analysis

Discharge of decentralized livestock wastewater without effective treatment has become a common problem in rural areas, threatening the regional water environment. A new microcurrent-assisted multi-soil-layering (MSL) system was developed for treating rural decentralized livestock wastewater. The results showed the highest removal rates of chemical oxygen demand (COD) and total phosphorus (TP) in MSL systems reached 95.45% and 92.0%, respectively. The removal rate of total nitrogen (TN) in MSL systems ranged from 60 to 75%. The bacterial diversity changes among MSL systems showed that high-level height of bottom submergence had a positive effect on the abundance of denitrifying bacteria, while low-level height of bottom submergence had a positive impact on the abundance of nitrifying bacteria. The effect of low-level external voltage on bacterial abundance was better than that of high-level external voltage. Both high- and low-level influent C/N ratios had no significant effect on bacterial abundance. The metabolism and activity of microorganisms were promoted with microcurrent stimulation from the perspective of increased bacterial abundance in MSL systems with improved treatment performance.

Changes in the taxonomic and functional structure of microbial communities during vegetable waste mixed silage fermentation

Silage fermentation, a sustainable way to use vegetable waste resources, is a complex process driven by a variety of microorganisms. We used lettuce waste as the main raw material for silage, analyzed changes in the physico-chemical characteristics and bacterial community composition of silage over a 60-day fermentation, identified differentially abundant taxa, predicted the functional profiles of bacterial communities, and determined the associated effects on the quality of silage. The biggest changes occurred in the early stage of silage fermentation. Changes in the physico-chemical characteristics included a decrease in pH and increases in ammonia nitrogen to total nitrogen ratio and lactic acid content. The numbers of lactic acid bacteria (LAB) increased and molds, yeasts and aerobic bacteria decreased. The bacterial communities and their predicted functions on day 0 were clearly different from those on day 7 to day 60. The relative abundances of phylum Firmicutes and genus Lactobacillus increased. Nitrite ammonification and nitrate ammonification were more prevalent after day 0. The differences in the predicted functions were associated with differences in pH and amino acid, protein, carbohydrate, NH3-N, ether extract and crude ash contents.

Bacterial Community Structure and Dynamic Changes in Different Functional Areas of a Piggery Wastewater Treatment System

Chemicals of emerging concern (CEC) in pig farm breeding wastewater, such as antibiotics, will soon pose a serious threat to public health. It is therefore essential to consider improving the treatment efficiency of piggery wastewater in terms of microorganisms. In order to optimize the overall piggery wastewater treatment system from the perspective of the bacterial community structure and its response to environmental factors, five samples were randomly taken from each area of a piggery’s wastewater treatment system using a random sampling method. The bacterial communities’ composition and their correlation with wastewater quality were then analyzed using Illumina MiSeq high-throughput sequencing. The results showed that the bacterial community composition of each treatment unit was similar. However, differences in abundance were significant, and the bacterial community structure gradually changed with the process. Proteobacteria showed more adaptability to an anaerobic environment than Firmicutes, and the abundance of Tissierella in anaerobic zones was low. The abundance of Clostridial (39.02%) and Bacteroides (20.6%) in the inlet was significantly higher than it was in the aerobic zone and the anoxic zone (p < 0.05). Rhodocyclaceae is a key functional microbial group in a wastewater treatment system, and it is a dominant microbial group in activated sludge. Redundancy analysis (RDA) showed that chemical oxygen demand (COD) had the greatest impact on bacterial community structure. Total phosphorus (TP), total nitrogen (TN), PH and COD contents were significantly negatively correlated with Sphingobacteriia, Betaproteobacteria and Gammaproteobacteria, and significantly positively correlated with Bacteroidia and Clostridia. These results offer basic data and theoretical support for optimizing livestock wastewater treatment systems using bacterial community structures.

Response of wastewater treatment performance, microbial composition and functional genes to different C/N ratios and carrier types in MBBR inoculated with heterotrophic nitrification-aerobic denitrification bacteria

To operate the moving bed biofilm reactor inoculated with HN-AD bacteria (B-MBBR) instead of activated sludge for livestock and poultry breeding wastewater (LPBW) disposal in most efficient manner, nitrogen removal (NR) efficiency and microbial composition of two MBBRs with different carrier types under various C/N ratios were explored. Results indicated that the performance on NR greatly various in different carrier types under various C/N ratios. Attributing to the bacterial protection provided by the porous structure of polyvinyl alcohol (PVA) gel, MBBR using PVA gel as the carrier exhibited a more stable NR performance (range from 78.05% to 83.76%) versus that using Kaldnes (K1) as the carrier (range from 78.05% to 83.76%). Besides, microbial analysis indicated that MBBR with PVA gel as the carrier is conducive to the growth of oligotrophic and HN-AD bacteria (Paracoccus and Acinetobacter), and the highest relative abundance was 16.37% at C/N ratio of 6.

Impact of light on anoxic/oxic reactors: performance, quorum sensing, and metagenomic characteristics

The effect of light has raised attention on wastewater treatment. However, little research has concentrated on the influences of light on activated sludge. In this study, the influences of light on the performance, quorum sensing (QS) and metagenomic characteristics of anoxic/oxic reactors were investigated. The reactor without light (AO1) showed higher total nitrogen (TN) removal (79.15 ± 1.69%) than the reactor with light (AO2) (74.54 ± 1.30%), and significant differences were observed. It was observed that light facilitated the production of protein-like and tryptophan-like substances by employing parallel factor analysis for extracellular polymeric substance (EPS), resulting in more EPS production in AO2, indicating light was beneficial to EPS production. The concentrations of N-acyl-homoserine lactones (AHLs) were various in the two reactors, so the AHLs-mediated QS behaviors in both reactors were also different. These results revealed that light significantly influenced nitrogen removal, EPS, and QS. Metagenomic analysis based on Tax4Fun demonstrated that light reduced the denitrification, stimulated the polysaccharide and protein biosynthesis pathways and down-regulated the AHLs synthesis pathway, resulting in lower TN removal, more EPS production, and lower AHLs concentrations. Based on the above, the likely mechanism was proposed for the influences of light on the reactor.

Application of Internal Carbon Source from Sewage Sludge: A Vital Measure to Improve Nitrogen Removal Efficiency of Low C/N Wastewater

Biological nitrogen removal from wastewater is widely used all over the world on account of high efficiency and relatively low cost. However, nitrogen removal efficiency is not optimized when the organic matter has inadequate effect for the lack of a sufficient carbon source in influent. Although addition of an external carbon source (e.g., methanol and acetic acid) could solve the insufficient carbon source problem, it raises the operating cost of wastewater treatment plants (WWTPs). On the other hand, large amounts of sludge are produced during biological sewage treatment, which contain high concentrations of organic matter. This paper reviews the emerging technologies to obtain an internal organic carbon resource from sewage sludge and their application on improving nitrogen removal of low carbon/nitrogen wastewater of WWTPs. These are methods that could solve the insufficient carbon problem and excess sludge crisis simultaneously. The recovery of nitrogen and phosphorus from treated sludge before recycling as an internal carbon source should also be emphasized, and the energy and time consumed to treat sludge should be reduced in practical application.

Carbon to nitrogen ratios influence the removal performance of calcium, fluoride, and nitrate by Acinetobacter H12 in a quartz sand-filled biofilm reactor

This study investigated the influence of different carbon to nitrogen (C/N) ratios on the bio-removal efficiency of aquatic pollutants like calcium (Ca²⁺), fluoride (F^-), and nitrate (NO₃-N) in a quartz sand-filled biofilm reactor (QSBR) to treat the low C/N wastewater using Acinetobacter sp. H12 at pH 6.50. The simultaneous bio-removal rate of Ca²⁺, F^-, and NO₃^- reached 56.31%, 96.33, and 96.95 respectively. Nitrogen gas (N₂) was produced with no evidence of N₂O emission. Moreover, the morphological study of strain H12 and biological precipitates through SEM revealed that strain H12 provides the nucleation sites for microbially induced calcium precipitation to remove Ca²⁺ and F^-. Besides, XPS and XRD peak spectra implicated that Ca²⁺ and F^- were removed as CaF₂ and Ca₅(PO₄)₃F co-precipitates. The 16S rRNA sequencing analyses revealed that H12 belongs to Acinetobacter and has stronger MICP and denitrification potential as compared with other strains under low C/N conditions.

Bacterial dynamics and functions driven by bulking agents to mitigate gaseous emissions in kitchen waste composting

This study investigated the impacts of different bulking agents (i.e. garden waste, cornstalks, and spent mushroom substrates) on bacterial structure and functions for gaseous emissions during kitchen waste composting. High-throughput sequencing was integrated with functional Annotation of Prokaryotic Taxa (FAPROTAX) to decipher the bacterial structure and functions. Results show that adding cornstalks constructed a more complex and mutualistic bacterial network to enhance organic biodegradation. This scenario, however, aggravated the emission of ammonia and hydrogen sulphide with the enrichment of the genus Bacillus and Desulfitibacter at the thermophilic stage of composting to facilitate ammonification and sulphur-related respiration, respectively. By contrast, spent mushroom substrates facilitated the proliferation of the genus Pseudomonas to promote nitrate reduction at the cooling stage, leading to considerable emission of nitrous oxide. Compared to these two agents, garden waste contained less easily biodegradable substances to limit bacterial mutualism, thereby reducing gaseous emissions in composting.

Microbial community in biofilters for water reuse applications: A critical review

The combination of ozonation (O₃) and biofiltration processes has become practical and desirable in advanced water reclamation for water reuse applications. However, the role of microbial community and its characteristics (source, abundance, composition, viability, structure) on treatment performance has not received the same attention in water reclamation biofilters as in other applications, such as in drinking water biofilters. Microbial community characterization of biofilters used in water reuse applications will add evidence to better understand the potential microorganisms, consequent risks, and mechanisms that will populate drinking water sources and ultimately influence public health and the environment. This critical review provides insights into O₃-biofiltration as a treatment barrier with a focus on development, structure, and composition of the microbial community characteristics involved in the process. The effect of microorganism seeding by the influent before and after the biofilter and ozone oxidation effects are explored to capture the microbial ecology interactions and environmental factors affecting the media ecosystem. The findings of reviewed studies concurred in identifying Proteobacteria as the most dominant phylum. However, Proteobacteria and other phyla relative abundance differ substantially depending upon environmental factors (e.g., pH, temperature, nutrients availability, among others) gradients. In general, we found significant gaps to relate and explain the biodegradation performance and metabolic processes within the biofilter, and hence deserve future attention. We highlighted and identified key challenges and future research ideas to assure O₃-biofiltration reliability as a promising barrier in advanced water treatment applications.

A novel inhibition mechanism of aniline on nitrification: Aniline degradation competes dissolved oxygen with nitrification

Aniline is a toxic aromatic amine and an inhibitor of nitrification. This study explored the inhibition effect and underlying mechanism. After sludge acclimation, 540 mg/L aniline was removed in 24 h and almost all ammonia released from aniline was oxidized to nitrate. However, nitrification never started until no aniline left. The cellular adenosine triphosphate (cATP) concentration of acclimated sludge reduced only by 2% after aniline exposure. Neither transmembrane transport of ammonia nor ammonia monooxygenase (AMO) activity was affected by aniline. Growing initial aniline concentration did not deteriorate the specific nitrification rate (NR). These all revealed that the toxicity of aniline only play a minor role in inhibition. Competition for dissolved oxygen (DO) was proposed to be another possible inhibition mechanism. The oxygen affinity constant (Ks) of aniline degraders and ammonia-oxidizing bacteria (AOB) was calculated to be 0.894 mg/L and 1.274 mg/L respectively, suggesting the former possessed much stronger oxygen affinity (P < 0.01). With aniline and ammonium as initial substrates, increasing aeration intensity advanced nitrification and increased the NR. Max NR of 0.63 mgN/(gMLSS·h) was achieved at the highest aeration intensity of 1000 mL/min. This study brings one step closer to better removal of aniline and derived nitrogen pollutants.

Ecological Treatment and Resource Utilization of Wastewater from a Chicken Transfer Station

Research was conducted at a chicken transfer station to assess ecological treatment and resource utilization. The study examined three aspects: wastewater ecological treatment, resource utilization maximization, and process optimization. Process design and operation monitoring were carried out to treat and reuse wastewater from a chicken feeder station over two periods. The first period was operated in 2014, adopting the mode of pretreatment plus a constructed wetland. Results show that the relevant indicators basically meet the regulatory requirements at that time. The second period carried out in 2017 improved upon the results obtained during the first period. On the basis of strengthening the pretreatment and constructed wetland functions, full recycling of tailwater and zero discharge of wastewater was achieved. The aquatic plant water celery used for wetland wastewater purification function also reached the standard of safe vegetable consumption, producing systematic ecological and economic benefits. The second phase of the project has high promotion and application value in the wastewater treatment of the chicken transfer station. This study demonstrates an improved approach to poultry production wastewater treatment by transforming wastewater into an agricultural product while achieving wastewater reuse and environmental pollution control.

The cotreatment of old landfill leachate and domestic sewage in rural areas by deep subsurface wastewater infiltration system (SWIS): Performance and bacterial community☆

In this work, two deep subsurface wastewater infiltration systems (SWISs) were constructed and fed with domestic sewage (control system, S1) and mixed wastewater consisting of old landfill leachate and domestic sewage (experimental system, S2). S1 and S2 exhibited favorable removal efficiencies, with TP (98.8%, 98.7%), COD (87.6%, 86.9%), NH₄⁺-N (99.8%, 99.9%) and TN (99.2%, 98.9%). Even when increasing the pollutant load in S2 by adding old landfill leachate, the almost complete removal performance could be maintained in terms of low effluent concentrations and even increased in terms of load removal capabilities, which included COD (19.4, 25.9 g∙m^-2·d^-1), NH₄⁺-N (8.2, 19.9 g∙m^-2·d^-1), TN (8.9, 20.6 g∙m^-2·d^-1). To investigate the transformation of dissolved organic matter along depth, Three-Dimensional Excitation Emission Matrix fluorescence spectroscopy combined with Fluorescence Regional Integration analysis was applied. The results showed that P_Ⅰ,n and P_Ⅱ,n (the proportions of biodegradable fractions) increased gradually from 6.59% to 21.8% at S2_20 to 10.8% and 27.7% at S2_110, but P_Ⅲ,n and P_Ⅴ,n (the proportions of refractory organics) declined from 23.1% to 27.8% at S2_20 to 21.1% and 16.4% at S2_110, respectively. In addition, high-throughput sequencing technology was employed to observe the bacterial community at different depths, and the predicted functional potential of the bacterial community was analyzed by PICRUSt. The results showed that the genera Flavobacterium, Pseudomonas, Vogesella, Acinetobacter and Aquabacterium might be responsible for refractory organic degradation and that their products might serve as the carbon source for denitrifiers to achieve simultaneous nitrate and refractory organic removal. PICRUSt further demonstrated that there was a mutual response between refractory organic degradation and denitrification. Overall, the combined treatment of domestic sewage and old leachate in rural areas by SWIS is a promising approach to achieve comprehensive treatment.

Diversity and plant growth-promoting potential of (un)culturable bacteria in the Hedera helix phylloplane

Background

A diverse community of microbes naturally exists on the phylloplane, the surface of leaves. It is one of the most prevalent microbial habitats on earth and bacteria are the most abundant members, living in communities that are highly dynamic. Today, one of the key challenges for microbiologists is to develop strategies to culture the vast diversity of microorganisms that have been detected in metagenomic surveys.

Results

We isolated bacteria from the phylloplane of Hedera helix (common ivy), a widespread evergreen, using five growth media: Luria–Bertani (LB), LB01, yeast extract–mannitol (YMA), yeast extract–flour (YFlour), and YEx. We also included a comparison with the uncultured phylloplane, which we showed to be dominated by Proteobacteria, Actinobacteria, Bacteroidetes, and Firmicutes. Inter-sample (beta) diversity shifted from LB and LB01 containing the highest amount of resources to YEx, YMA, and YFlour which are more selective. All growth media equally favoured Actinobacteria and Gammaproteobacteria, whereas Bacteroidetes could only be found on LB01, YEx, and YMA. LB and LB01 favoured Firmicutes and YFlour was most selective for Betaproteobacteria. At the genus level, LB favoured the growth of Bacillus and Stenotrophomonas, while YFlour was most selective for Burkholderia and Curtobacterium. The in vitro plant growth promotion (PGP) profile of 200 isolates obtained in this study indicates that previously uncultured bacteria from the phylloplane may have potential applications in phytoremediation and other plant-based biotechnologies.

Conclusions

This study gives first insights into the total bacterial community of the H. helix phylloplane, including an evaluation of its culturability using five different growth media. We further provide a collection of 200 bacterial isolates underrepresented in current databases, including the characterization of PGP profiles. Here we highlight the potential of simple strategies to obtain higher microbial diversity from environmental samples and the use of high-throughput sequencing to guide isolate selection from a variety of growth media.

Supplementary Information

The online version contains supplementary material available at 10.1186/s12866-021-02119-z.

Using Bioinformatics to Quantify the Variability and Diversity of the Microbial Community Structure in Pond Ecosystems of a Subtropical Catchment

Background:

In rural China, many natural water bodies and farmlands have been converted into fish farming ponds as an economic developmental strategy. There is still a limited understanding of how the diversity and structure of microbial communities change in nature and become managed fish pond ecosystems.

Objective:

We aimed to identify the changes of the diversity and structure of microbial community and driving mechanism in pond ecosystems.

Methods:

The datasets of 16S rRNA amplicon sequencing and the concentrations of N and P fractions were achieved in water samples of pond ecosystems. Bioinformatics analysis was used to analyze the diversity and structure of the microbial communities.

Results:

Our results indicated that the diversity and structure of the microbial communities in the natural ponds were significantly different from ones in managed fish ponds. The nutrients of N and P and water environmental factors were responsible for 46.3% and 19.5% of the changes in the structure and diversity of the microbial community, respectively.

Conclusion:

The N and P fractions and water environmental factors influenced the microbial community structure and diversity in pond ecosystems. Fish farming indirectly affected the microbial community by altering the contents of N and P fractions in water bodies of ponds, when a natural pond was converted into a managed fish pond.

The effects of C/N (10-25) on the relationship of substrates, metabolites, and microorganisms in "inhibited steady-state" of anaerobic digestion

The carbon/nitrogen ratio (C/N) is a key parameter that affects the performance of anaerobic digestion (AD). Recent AD research has focused on optimizing the C/N of feedstock. The so-called "inhibited steady-state" refers to a special state of ammonia inhibition of AD that often occurs at low-C/N (below 25) when degradable nitrogen-rich substrates, such as livestock manure, are used as feedstock. However, the mechanism behind the "inhibited steady-state" is still unknown. In the current study, co-digestion and recirculation were used to create a C/N gradient in the influent to explore the relationship between substrates, metabolites, and microorganisms in the "inhibited steady-state." Data were collected at the macro, microbial, and genetic levels. Three CSTRs were successfully made run into the "inhibited steady-state" using influent C/Ns of 10-12. Digestion performance levels of R10-R12 were low and stable, transitioning from an aceticlastic methane-producing pathway to a hydrogenotrophic pathway as the C/N gradually decreased. As the abundance of the hydrogenophilic methanogens increased, the abundance of syntrophic acetate-oxidizing bacteria (SAOB) also increased. The succession between populations of Methanosaeta and Methanosarcina may be used as a microbiological indicator of ammonia inhibition. Under high-C/Ns, cooperation among bacteria was high, while under low-C/Ns, competition among bacteria was high. These results clarify the processes underlying the "inhibited steady-state," which is a condition often faced in actual large-scale biogas facilities that use degradable nitrogen-rich substrates. Moreover, practical guidelines for evaluating ammonia inhibition are provided, and strategies to alleviate ammonia suppression are developed.

Bioaugmentation of Moving Bed Biofilm Reactor (MBBR) with Achromobacter JL9 for enhanced sulfamethoxazole (SMX) degradation in aquaculture wastewater

This study investigated whether bioaugmentation improves sulfamethoxazole (SMX) degradation and nitrogen removal in the Moving Bed Biofilm Reactor (MBBR) system. The effects of the C/N ratio on SMX degradation and nitrogen removal were also evaluated. Using MBBR system operation experiments, the bioaugmented reactor was found to perform more effectively than the non-bioaugmentation reactor, with the highest SMX, nitrate-N, and ammonia-N removal efficiencies of 80.49, 94.70, and 96.09%, respectively. The changes in the sulfonamide resistance genes and bacterial communities were detected at various operating conditions. The results indicate that the diversity of the bacterial communities and the abundance of resistance genes were markedly influenced by bioaugmentation and the C/N ratio, with Achromobacter among the dominant genera in the MBBR system. The bio-toxicity of samples, calculated as the inhibition percentage (IP) toward Escherichia coli, was found to decrease to non-toxic ranges after treatment.

Improvement in nitrogen removal and changes in community structure in a sequencing batch reactor bioaugmented with P. stutzeri strain XL-2

The aim of this work was to study the bioaugmentation of P. stutzeri strain XL-2 in activated sludge to improve nitrogn removal from wastewater with the guide of growth kinetics. When 4250 mg/L COD and 80 mg/L NH₄⁺-N were applied, the TN removal efficiency in a bioaugmented sequencing batch reactor (SBR_XL) achieved 95%, while that in the control reactor (SBR_C) without strain XL-2 was only 84% (P < 0.05). The microbial community analysis demonstrated that strain XL-2 was successfully bioaugmented in SBR_XL, and increasing influent COD concentration promoted its abundance. Influent COD concentration played a dominant role in affecting community structure, while the bioaugmentation of strain XL-2 had much less impact on the community structure. Combined with principal coordinates analysis, redundancy analysis and FAPROTAX, the improvement of TN removal was mainly achieved by the bioaugmentation of strain XL-2, which played a major role in promoting aerobic denitrification.

Sustainable livestock wastewater treatment via phytoremediation: Current status and future perspectives

Phytoremediation, the application of vegetation and microorganisms for recovery of nutrients and decontamination of the environment, has emerged as a low-cost, eco-friendly, and sustainable approach compared to traditional biological and physico-chemical processes. Livestock wastewater is one of the most severe pollution sources to the environment and water resources. When properly handled, livestock wastewater could be an important alternative water resource in water-scarce regions. This review discussed the characteristics and hazards of different types of livestock wastewater and available methods for the treatment. Meanwhile, the current status of investigations on phytoremediation of livestock wastewater via different hydrophyte systems such as microalgae, duckweed, water hyacinth, constructed wetlands, and other hydrophytes is reviewed, and the utilization of hydrophytes after management is also discussed. Furthermore, advantages and limitations on livestock wastewater management via phytotechnologies are emphasized. At last, future research needs are also proposed.

Nutrient removal performance and microbiome of an energy-efficient reciprocation MLE-MBR operated under hypoxic conditions

A critical challenge in the application of membrane bioreactors (MBR) for domestic wastewater treatment is its high energy consumption caused by continuous aeration for biofouling control. To reduce energy consumption and mitigate fouling in membranes, alternative configurations using dynamic shear-enhanced filtration by membrane reciprocation, rotation, and vibration to mechanically impose shear on membrane surfaces have been recently introduced. However, although these methods are effective at lowering energy usage, the nutrient removal efficiencies and microbial community compositions of these systems have not been well studied. In this study, a lab-scale no-aeration reciprocation membrane bioreactor was used to characterize the microbial composition, functional profile and nutrient removal of the reciprocation MBR system operated under hypoxic conditions. Microbial community analysis showed Proteobacteria (35%) and Saccharibacteria (27%) to be the most abundant phyla in the sludge and the biofilm samples, respectively. Nitrogen and phosphorus removal efficiencies were observed at 70% and 50% while the chemical oxygen demand concentration had about a 99% decrease in the effluent. Quantitative PCR of nutrient-removing genes revealed the presence of complete ammonia-oxidizing organisms (comammox) with a mean abundance of 1.88 × 10⁴ gene copies/g sludge, which explains the high ammonia removal despite a low abundance of canonical ammonia-oxidizing bacteria (AOB). Fluorescence in-situ hybridization showed a prevalence of nitrite-oxidizing bacteria (NOB) with clusters that are distant from other nutrient-removing communities, suggesting that their metabolism is not dependent on ammonia oxidizers. The reciprocation MBR configuration may be a suitable, more energy-efficient alternative to conventional air-scouring systems because of its biofouling mitigation and promising nutrient removal performed by the diverse microbial communities in its system.

Substrate strategy optimization for polyhydroxyalkanoates producing culture enrichment from crude glycerol

Crude glycerol is by-product produced from biodiesel industry and can be converted directly by mixed microbial culture (MMC) into polyhydroxyalkanoates (PHAs). This study investigated the effects of the reverse (SBR_A) and positive (SBR_B) glycerol gradient substrate strategy on PHA-accumulating culture enrichment and the maximum PHA accumulating stability under substrates with different glycerol and volatile fatty acid (VFA) proportion. The results showed that crude glycerol was mainly used for PHA production rather than biomass growth in SBR_A. The maximum q_PHA was 0.65 g COD/g X^-1·h^-1 under sole crude glycerol condition in SBR_A, which was 2.41 times higher than that of SBR_B. Moreover, the PHA accumulating ability of the biomass from SBR_A was more stable than SBR_B. Saccharibacteria_genera_incertae_sedis was for the first time found to be the dominant genus using crude glycerol for PHA production. This research provides an insight into enrichment strategy to effectively enrich PHA-accumulating culture from crude glycerol.

Effect of low-intensity electric current field and iron anode on biological nitrate removal in wastewater with low COD to nitrogen ratio from coal pyrolysis

Mixotrophic nitrate removal in wastewater from coal pyrolysis was achieved in microbial electrolysis cell with iron anode (iron-MEC). The effect of voltage, iron anode and conductivity were investigated. The effluent TN concentration was 8.35 ± 1.94 mg/L in iron-MEC when the conductivity of the wastewater was adjusted to 3.97 ± 0.08 mS/cm, which was lower than that in no-treated reactor. The increase of current density, which was resulted from the elevation of conductivity, promoted the iron corrosion and Fe2+ ion generation. Therefore, more Fe2+ ion was utilized by nitrate reducing ferrous oxidation bacteria (NRFOB) used to reduce nitrate. The microbial community analysis demonstrated that NRFOB, including Acidovorax and Bradyrhizobium, possessed a higher abundance in iron-MEC. The enrichment of Geobacter in iron-MEC might imply that the part of Fe(III) produced by ferrous oxidation was reduced by Geobacter, which established an iron cycle. Moreover, the production of N2O was decreased by the formation of Fe2+ ion.

Metagenomic insights into microbial characterizations in explaining the distinction of biofilter performance during start-up

As an effective alternative for dissolved nitrogen removal, biofilter closely associates its treatment performance to structural and/or operational conditions. In this study, a set of four different biofilters including MAVF (mature aerated vertical flow), NAVF (new aerated vertical flow), NVF (new non-aerated vertical flow), and BHF (baffled non-aerated horizontal flow) were employed to purify low C/N ratio (3.8) domestic wastewater. All the filters were packed with round ceramsite operated under varying hydraulic loading rates (HLRs) of 0.024-0.18 m/day. During the start-up, both the physicochemical and microbial characterizations were investigated. It was found that, carbon and nitrogen could achieve ideal removal in MAVF once added with further sedimentation, while phosphorus displayed an unsatisfactory sequestration in any of the four filters probably due to the high inflow load and/or lack of alternate anaerobic/aerobic conditions. Filter clustering based on percent removal and removal rate constant displayed a consistent pattern, which was similar to that based on taxa of phylum from 16S rRNA sequencing, or phylum/genus/species from shotgun metagenomic sequencing although there were obvious distinctions in taxa compositions among direct comparison. Meanwhile, gene function annotation revealed that filter clustering based on metabolic pathways was consistent with that based on purification performance. These consistencies might imply that the treatment performance was mainly determined by microbial degradation. The enrichment of specific functional microbes responsible for the degradation of certain pollutants, such as carbohydrates, matched well with the defined purification performance.

Photosynthetic bacteria-based technology is a potential alternative to meet sustainable wastewater treatment requirement?

A paradigm shift is underway in wastewater treatment from pollution removal to resource or energy recovery. However, conventional activated sludge (CAS) as the core technology of wastewater treatment is confronted with severe challenges on high energy consumption, sludge disposal and inevitable greenhouse gas emission, which are posing a serious impact on the current wastewater industry. It is urgent to find new alternative methods to remedy these defects. Photosynthetic bacteria (PSB) have flexible metabolic modes and high tolerance, which enhance the removal of nutrients, heavy metals and organic contaminants efficiency in different wastewater. The unique phototrophic growth of PSB breaks the restriction of nutrient metabolism in the CAS system. Recent studies have shown that PSB-based technologies can not only achieve the recovery of nutrient and energy, but also improve the degradation efficiency of refractory substances. If the application parameters can be determined, there will be great prospects and economic effects. This review summarizes the research breakthroughs and application promotion of PSB-based wastewater treatment technology in recent years. Comparing discussed the superiority and inferiority from the perspective of application range, performance differences and recovery possibility. Pathways involved in the nutrient substance and the corresponding influencing parameters are also described in detail. The mode of PSB biodegradation processes presented a promising alternative for new wastewater treatment scheme. In the future, more mechanical and model studies, deterministic operating parameters, revolutionary process design is need for large-scale industrial promotion of PSB-based wastewater treatment.

Biofilm characteristics, microbial community structure and function of an up-flow anaerobic filter-biological aerated filter (UAF-BAF) driven by COD/N ratio

The biofilm characteristics, microbial community structure and function in a lab-scale up-flow anaerobic filter-biological aerated filter (UAF-BAF) driven by COD/N ratio were investigated. Results showed that the TN removal rate of system reduced from 68.7% to 50.6% with COD/N ratio ranging from 10 to 3. Biofilm characteristics analysis indicated that the biomass, biofilm thickness, polysaccharide and protein contents in extracellular polymeric substance and dehydrogenase activity from biofilm in the UAF-BAF declined with the decrease of COD/N ratio. The biofilm structure visualized by confocal laser scanning microscopy displayed that the total cells and EPS content decreased as the COD/N ratio downshifted. 16S rRNA sequencing illustrated that Zoogloea and Pleomorphomonas were the major contributors to TN removal in the UAF, with dramatically decreasing abundance. Functional prediction indicated that the genes involved in nitrogen metabolism and nitrate reductase (EC 1.7.99.4) also decreased, which was responsible for the decrease of TN removal. This study provided insights into understanding of the biofilm structure and underlying ecological function in the UAF-BAF, which would help to regulate wastewater biofilm and improve process performance.

Integrated effects of temperature and COD/N on an up-flow anaerobic filter-biological aerated filter: Performance, biofilm characteristics and microbial community

The integrated effects of temperature and COD/N ratio on performance, biofilm characteristics and microbial community in up-flow anaerobic filter-biological aerated filters (UAF-BAFs) were investigated. Results indicated that the UAF-BAF system could achieve excellent COD, NH₄⁺-N and TN removal, in which effluent quality well met the Class 1A standard. Biofilm physicochemical characteristics showed that the biomass, biofilm thickness and extracellular polymeric substance (EPS) content in the UAF-BAFs reduced with the decrease in COD/N ratio, but were enhanced under low temperature. The biofilm structure characterized by CLSM in the UAF-BAFs significantly shifted, which was closely correlated with operational conditions. Sequencing analysis revealed that Proteobacteria, Epsilonbacteraeota, Bacteroidetes and Firmicutes were dominant in the UAFs and the abundance of ammonium oxidizing bacteria (AOB) was responsible for nitrification performance in the BAFs. Functions analysis indicated that amino acid metabolism, carbohydrate metabolism, energy metabolism and lipid metabolism were clearly regulated by parameters changes.