Lignocellulosic crop residue composting by cellulolytic nitrogen-fixing bacteria: A novel tool for environmental sustainability

Transformation effects of Bacillus subtilis BSNK-5 on okara: Insights into its component transformation, structural characteristics, and functional properties

The high-value utilization of okara is vital for promoting sustainable practices in the soybean industry and addressing global food security challenges. This study investigated the effects of Bacillus subtilis BSNK-5 fermentation on okara's nutritional, structural, and functional properties. BSNK-5 fermentation effectively degraded insoluble dietary fiber, protein, and fat into soluble fiber, peptides, amino acids, and fatty acids, while reducing trypsin inhibitors and antigenic proteins. It also increased phenolic compounds, promoted the conversion of glycosides to aglycones, and enhanced digestibility and nutritional quality. After fermentation with BSNK-5, the surface wrinkles of the okara were reduced, and the particles became smaller. Additionally, BSNK-5 fermentation improved water-holding, oil-holding, swelling capacities, antioxidant activity, cholesterol binding, glucose absorption, and antihypertensive properties. These results highlight the potential of BSNK-5 fermentation to enhance okara's nutritional and functional value, providing valuable raw materials for the food industry.

Comparison of the Bacterial and Fungal Communities and Metabolic Functions of Cottonseed Hull Waste Compost Associated with High and Low Yields of Straw Mushroom Volvariella volvacea

Volvariella volvacea was grown on cottonseed hull waste compost and divided into high-yield (HBE) and low-yield (LBE) conditions. Gene sequencing was used to examine bacterial and fungal populations during cottonseed husk waste composting. At the end of fermentation, the dominant bacterial genera in the HBE compost were Chelatococcus and Thermobacillus, while Symbiobacterium and Acinetobacter were more abundant in the LBE compost. Ascomycota and Basidiomycota dominated all the composting phases. The Ascomycota genera Colletotrichum, Pichia, Mycothermus, and Thermomyces dominated in phase II of HBE composting. The LBE compost had higher abundances of the Basidiomycota genera Cystofilobasidium and Cryptococcus than the HBE compost. The predicted pathotroph and saprotroph-symbiotroph abundances were more positively linked to HBE composting phase II than to LBE composting. High-biological-efficiency microbial communities are characterized by high pH, carbon, and nitrogen levels. Changes in physiochemical traits, microbial diversity, and metabolism affect the V. volvacea yield.

Deciphering the driving mechanism of microbial community for rapid stabilization and lignocellulose degradation during waste semi-aerobic bioreactor landfilling with multifunctional microbial inoculum

Owing to the massive refractory lignocellulose and leachate-organic loads, the stabilization of municipal solid waste (MSW) landfill is often prolonged, resulting in environmental burdens. Herein, various assembled multifunctional microbial inoculums (MMIs) were introduced into the semi-aerobic bioreactor landfill (SABL) to investigate the bioaugmentation impacts. Compared to control (CK) and other MMIs treatments (G1-G3), LD + LT + DM inoculation (G4) significantly increased volatile solids degradation (9.72-45.03 %), while reducing chemical oxygen demand (COD) content (10.34-51.85 %) and ammonia nitrogen concentration (80.71-90.95 %) in the leachate. G4 also exhibited significantly higher degradation of cellulose and hemicellulose, achieving 0.99 and 1.94 times higher efficiency than CK, respectively. Microbial analysis revealed that LD + LT + DM reshaped microbial communities composition of SABL, with most of the introduced microorganisms (Enterobacter, Sphingobacterium, Streptomyces, etc.) successfully colonizing, and stimulating indigenous functional microbes associated with organic matter decomposition. Additionally, microbial interactions were strengthened in G4, accompanied by the higher abundance of 11 biomarkers and enzymes involved in lignocellulose degradation and ammonia nitrogen conversion. Overall, LD + LT + DM maximized MMI function by reconstructing synergistic core microbes. These findings highlight the superiority of LD + LT + DM in simultaneously regulating the microbial composition of lignocellulose-rich waste landfills, expediting MSW decomposition, improving leachate treatment, and mitigating odor emissions, offering valuable insights for efficient MSW management.

Interactions between N, P in the overlying water and flooding-induced decomposition of Cynodon dactylon in the water-level fluctuation zone

During flooding in the Water Level Fluctuation Zone (WLFZ), nutrient levels of nitrogen (N) and phosphorus (P) in the overlying water fluctuate due to soil nutrient release, impacting the decomposition of plants like Cynodon dactylon. However, limited research on the effects of these nutrient changes on plant nutrient release and water dynamics complicates accurate assessments of water quality impacts. This study used 8 water samples with varying initial nutrient levels to simulate N and P changes induced by WLFZ soil nutrients and examined the decomposition and nutrient dynamics of Cynodon dactylon. Results showed that flooding significantly increased initial levels of N and P, especially as particulate nitrogen (PN) and particulate phosphorus (PP), affecting both plant decomposition and nutrient dynamics in the water. After 60 days, Cynodon dactylon lost 47.97%-56.01% dry matter, 43.58%-54.48% total nitrogen (TN), and 14.28%-20.50% total phosphorus (TP). Initial PN and total dissolved nitrogen (TDN) promoted dry matter loss, PN and PP promoted TP loss, while PN and TDN inhibited TN loss. By day 60, no positive correlation was found between plant-released N and P and TN or TP in the overlying water. However, initial PP and PN levels were negatively correlated with TN and TP, indicating an inhibitory effect. Further analysis indicates that PN and PP released from the soil supported the formation of microbial aggregates, enhancing denitrification and phosphorus removal and thus improving water purification over time.

Harnessing the potential of exogenous microbial agents: a comprehensive review on enhancing lignocellulose degradation in agricultural waste composting

Composting converts organic agricultural wastes into value-added products, yet the presence of significant non-biodegradable lignocelluloses hinders its efficiency. The introduction of various exogenous microbial agents has been shown to effectively addresses this challenge. In this context, basing on the microbial enzymatic mechanism for lignocellulose degradation, this paper synthesizes the latest research advancements and practical applications of exogenous microbial agents in agricultural waste composting. Given that the effectiveness of lignocellulose degradation is highly dependent on the waste's inherent characteristics, it is crucial to carefully consider the composition of fungi and bacteria, the dosage of microbial agents, and the composting process operation, tailored to the specific type of agricultural waste. Moreover, the combination of additives with exogenous microbial agents can further enhance the degradation of lignocelluloses and the humification of organic matters. Furthermore, insights into the future research and application trends of exogenous microbial agents in agricultural waste composting was prospected.

Impact of straw returning on soil ecology and crop yield: A review

Several studies have demonstrated the effect of straw return on enhancing soil ecology, promoting sustainable agricultural practices, and cumulative effects on plant yield. Recent studies have focused on straw return methods and their impact on soil nutrient cycling and the overall physicochemical composition of the soil. Despite the substantial progress and successes, several research gaps in these studies require further investigations to harness the full potential of straw return. This review provides a thorough examination of straw diversity and decomposition mechanisms, the effects of straw on soil microorganisms, the interactions between cellulolytic nitrogen-fixing microbes and lignocellulose biomass, as well as nutrient mineralization, organic matter content, and their influence on plant growth and yield. This review also examined the effects of straw return on plant pathogens and its allelopathic impact on plant growth, highlighting research gaps to encourage further studies that could fully realize the potential benefits of straw return in agricultural fields for optimal plant growth.

Phenotypic Profiling of Selected Cellulolytic Strains to Develop a Crop Residue-Decomposing Bacterial Consortium

Slow decomposition rates of cereal crop residues can lead to agronomic challenges, such as nutrient immobilization, delayed soil warming, and increased pest pressures. In this regard, microbial inoculation with efficient strains offers a viable and eco-friendly solution to accelerating the decomposition process of crop residues. However, this solution often focuses mostly on selecting microorganisms based on the appropriate enzymic capabilities and neglects the metabolic versatility required to utilize both structural and non-structural components of residues. Therefore, this study aimed to address these limitations by assessing the metabolic profiles of five previously identified cellulolytic bacterial strains, including Bacillus pumilus 1G17, Micromonospora chalcea 1G49, Bacillus mobilis 5G17, Streptomyces canus 1TG5, and Streptomyces achromogenes 3TG21 using Biolog Phenotype Microarray analysis. Moreover, this study evaluated the impact of wheat straw inoculation with single strains and a bacterial consortium on soil organic carbon and nitrogen content in a pot experiment. Results revealed that, beyond the core subset of 12 carbon sources, the strains exhibited diverse metabolic capacities in utilizing 106 carbon sources. All strains demonstrated effective straw biomass degradation compared to the negative control, with significant differences detected only in oil seed rape straw biodegradation estimations. Furthermore, wheat straw inoculated with a bacterial consortium showed a significant increase in soil organic carbon content after 180 days in the pot experiment. Overall, these findings underscore the critical role of metabolic profiling in gaining a deeper understanding of microbial capabilities and addressing the complexities of residue composition and environmental variability.

Impact of cellulolytic nitrogen-fixing composite inoculants on humification pathways and nitrogen cycling in kitchen waste composting

Low humification and nitrogen loss pose substantial challenges to the resource utilization in kitchen waste composting. This study investigated the effects of brown-rot fungi (BRF), cellulolytic nitrogen fixing bacteria (CNFB), and their composite microbial inoculants (CMI) during composting. Results indicated that microbial inoculants extended the thermophilic phase and enhanced cellulose degradation. Compared with the control, the degree of polymerization (HA/FA) in BRF, CNFB, and CMI was 2.28, 1.85, and 2.68 times higher, respectively, while increasing total nitrogen by 11.15%, 15.50%, and 19.73%. BRF and CMI primarily enhanced the Maillard humification pathway, while CNFB promoted the polyphenol humification pathway. Additionally, BRF enhanced nitrification and reduced denitrification, whereas CNFB and CMI improved nitrification, nitrogen fixation, and ammonification while reducing denitrification. Overall, BRF primarily promoted humification, while CNFB excelled in nitrogen retention. The CMI achieved optimal humification and nitrogen retention, indicating a potential sustainable solution for kitchen waste composting.

Enhanced effect of ferrous sulfate on nitrogen retention and PBAT degradation during co-composting by combing with biochar-loaded FN1 bacterial composites

The treatment of biodegradable plastics through composting has garnered increasing attention. This study aimed to investigate the effects of Biochar FN1 bacteria and ferrous sulfate on nitrogen retention, greenhouse gas emissions, and degradable plastics during composting and to elucidate their synergistic mechanisms on microbial communities. Compared with the control, applying biochar-loaded FN1 bacteria composites combined with Ferrous sulfate (SGC) markedly accelerated organic matter degradation and reduced cumulative CO2 and NH3 emissions. The synergistic interaction between the composites and Ferrous sulfate significantly enhanced NH4+-N levels in the thermophilic phase and NO3--N levels in the cooling phase, ultimately decreasing nitrogen loss by 14.9% (P < 0.05) and increasing the seed germination index (GI) by 22.5% (P < 0.05). Additionally, PBAT plastic degradation was improved by 31.6% (P < 0.05). The SGC treatment also altered the richness and diversity of the bacterial community in both the compost and the PBAT plastic sphere, particularly affecting Sphingobacterium, Pseudomonas, and Flavobacterium at the genus level. Symbiotic network analysis and Redundancy Analysis revealed that these functional degradation bacteria were significantly positively correlated with NO3--N levels and PBAT degradation. Furthermore, structural equation modelling indicated a positive relationship between PBAT degradation rate and composting temperature (r = 0.69, p < 0.05). The findings suggested that Fe2+ not only enhanced the FN1 activity but also promoted PBAT degradation by increasing ·OH content on the PBAT plastic sphere. Overall, the combined use of biochar-loaded FN1 bacteria and Ferrous sulfate effectively supports nitrogen retention and plastic degradation during composting.

Exploring the link between soil health and crop productivity

Understanding the complex interactions of plants and soils in the face of global food security and environmental degradation challenges is critical to the future of sustainable agriculture. This review discusses the important link between soil health and crop productivity by providing and comprehensive assessment of soil properties and management methods. By examining the physical, chemical, and biological properties of soil, it uncovers the key limitations posed by the soil environment on crop growth. The review highlights how soil texture, nutrient availability, and moisture levels directly impact on root growth, water uptake, and nutrient use efficiencies, while also exploring how diverse cropping systems enhance soil ecology and biodiversity. By utilizing state-of-the-art bioinformatics, we offer an in-depth exploration of rhizosphere microbial communities, emphasizing the functions of phosphate-solubilizing and nitrogen-fixing bacteria in promoting vital nutrient cycles. The potential of using microbial fertilizers to increase crop resistance to disease and stress hold a major premise for future sustainability in agriculture. In this regard, this review highlights the long-term impacts of crop cultivation on soil microbial diversity, revealing intricate selection processes between crops and their microbial partners in shaping crop-soil-microbe interactions. In terms of soil management, practical nutrient management strategies are proposed based on soil testing, emphasizing the benefits of organic farming and conservation tillage for soil health. Modern precision agricultural tools and remote sensing technologies are encouraged to be refined for effective nutrient management. At the policy level, we evaluate international guidelines aimed at fostering agricultural sustainability, suggesting new research pathways for crop-soil dynamics and offering approaches for developing soil health indicators in the face of global environmental challenges.

Precise application of water and fertilizer to crops: challenges and opportunities

Precision water and fertilizer application technologies have emerged as crucial innovations in sustainable agriculture, addressing the pressing need to enhance crop yield and quality while optimizing resource use and minimizing environmental impacts. This review systematically explores the latest advancements in precision water and fertilizer application technologies. It examines the integration of advanced sensors, remote sensing, and machine learning algorithms in precision agriculture, assessing their roles in optimizing irrigation and nutrient management. The study evaluates various precision techniques, including micro-irrigation systems, variable rate technology (VRT), and predictive modeling, along with their implementation in diverse agricultural settings. Furthermore, the review addresses the challenges posed by soil environmental heterogeneity and emphasizes the necessity for a scientific index system to guide precise applications. Advanced irrigation methods, such as subsurface drip irrigation and micro-sprinkling, improve water-use efficiency and reduce salinity levels, while precision fertilization techniques optimize nutrient uptake and minimize leaching. The integration of machine learning and remote sensing facilitates real-time monitoring and adaptive management, resulting in increased resource use efficiency and reduced environmental pollution. However, the effectiveness of these technologies is contingent upon addressing soil heterogeneity and developing standardized application indices. This review highlights the novel combination of advanced sensing technologies and data analytics in precision agriculture, enabling targeted interventions tailored to specific field conditions. It underscores the importance of integrating soil microbial community dynamics and biochemical indicators with precision management practices to enhance soil fertility and crop performance. Furthermore, the development of predictive models and time series analysis tools represents a significant advancement in anticipating and responding to changing environmental conditions. Precision water and fertilizer application technologies offer substantial benefits for sustainable agricultural practices by improving crop yields, enhancing resource efficiency, and mitigating environmental impacts. The strategic integration of these technologies with tailored agricultural practices and robust monitoring systems is essential for optimizing nutrient cycling and maintaining soil health. Addressing existing challenges through interdisciplinary research and collaborative efforts will further advance the implementation of precision agriculture, contributing to long-term soil sustainability and global food security.

Creation of Cellulolytic Communities of Soil Microorganisms-A Search for Optimal Approaches

For the targeted selection of microbial communities that provide cellulose degradation, soil samples containing cellulolytic microorganisms and specific plant residues as a substrate can be used. The details of this process have not been studied: in particular, whether the use of different soils determines the varying efficiency of communities; whether these established cellulolytic communities will have substrate specificity, and other factors. To answer these questions, four soil microbial communities with different cellulolytic activity (Podzol and the soil of Chernevaya taiga) and substrates (oat straw and hemp shives) with different levels of cellulose availability were used, followed by trained communities that were tested on botrooth substrates (in all possible combinations). Based on the analysis of the taxonomic structure of all communities and their efficiency across all substrates (decomposition level, carbon, and nitrogen content), it was shown that the most important taxa of all trained microbial cellulolytic communities are recruited from secondary soil taxa. The original soil does not affect the efficiency of cellulose decomposition: both soils produce equally active communities. Unexpectedly, the resulting communities trained on oats were more effective on hemp than the communities trained on hemp. In general, the usage of pre-trained microbial communities increases the efficiency of decomposition.

Promoting effect of ammonia oxidation on sulfur oxidation during composting: Nitrate as a bridge

Ammonia (NH3) and hydrogen sulfide (H2S) are the main odor components in the composting process. Controlling their emissions is very important to reduce environmental pollution and improve the quality of composting products. This study explored the effects of functional bacteria on nitrogen and sulfur metabolism in the composting process of food waste (FW) by adding ammonia-oxidizing bacteria (AOB, A treatment), sulfur-oxidizing bacteria (SOB, S treatment), and combined AOB and SOB (AS treatment), respectively. The key bacterial species involved in nitrogen and sulfur transformation were identified, and the intrinsic mechanisms by which ammonia oxidation drove sulfur oxidation during composting were deciphered. Compared with control treatment (CK), the combined addition of functional microorganisms increased the maximum of soxB gene abundance by 1.72 times, thus resulting in the increase in the SO42- content by 44.00 %. AS treatment decreased the cumulative H2S emission and total sulfur (TS) loss by 40.24 % and 34.69 %, respectively, meanwhile lowering NH3 emission. Correlation network analysis showed that the simultaneous addition of AOB and SOB enhanced the correlation between microorganisms and sulfur oxidation genes, and Acinetobacter, Aeribacillus, Brevibacterium and Ureibacillus might be involved in the ammonia oxidation-promoted sulfur oxidation process. In summary, the optimized inoculation strategy of AOB and SOB could drive biological transformation of nitrogen and sulfur by regulating microbial community, ultimately reducing odor emissions and improving sulfur conservation.

Maximizing microbial activity and synergistic interaction to boost biofuel production from lignocellulosic biomass

Addressing global environmental challenges and meeting the escalating energy demands stand as two pivotal issues in the current landscape. Lignocellulosic biomass emerges as a promising renewable bio-energy source capable of fulfilling the world's energy requirements on a large scale. One of the most important steps in lowering reliance on fossil fuel and lessening environmental effect is turning lignocellulosic biomass into biofuel. As carbon-neutral substitutes for traditional fuel, biofuel offer a solution to environmental concerns compared to conventional fuel. Effective utilization of lignocellulosic biomass is imperative for sustainable development. Ongoing research focuses on exploring the potential of various microorganisms and their co-interactions to synthesize diverse biofuels from different starting materials, including lignocellulosic biomass. Co-culture techniques demonstrate resilience to nutrient scarcity and environmental fluctuations. By utilising a variety of carbon sources, microbes can enhance their adaptability to environmental stressors and potentially increase productivity through their symbiotic interactions. Furthermore, compared to single organism involvement, co-interactions allow faster execution of multistep processes. Lignocellulosic biomass serves as a primary substrate for pre-treatment, fermentation, and enzymatic hydrolysis processes. This review primarily delves into the pretreatment, enzymatic hydrolysis process and the biochemical pathways involved in converting lignocellulosic biomass into bioenergy.

Upgrade from aerated static pile to agitated bed systems promotes lignocellulose degradation in large-scale composting through enhanced microbial functional diversity

Composting presents a viable management solution for lignocellulose-rich municipal solid waste. However, our understanding about the microbial metabolic mechanisms involved in the biodegradation of lignocellulose, particularly in industrial-scale composting plants, remains limited. This study employed metaproteomics to compare the impact of upgrading from aerated static pile (ASP) to agitated bed (AB) systems on physicochemical parameters, lignocellulose biodegradation, and microbial metabolic pathways during large-scale biowaste composting process, marking the first investigation of its kind. The degradation rates of lignocellulose including cellulose, hemicellulose, and lignin were significantly higher in AB (8.21%-32.54%, 10.21%-39.41%, and 6.21%-26.78%) than those (5.72%-23.15%, 7.01%-33.26%, and 4.79%-19.76%) in ASP at three thermal stages, respectively. The AB system in comparison to ASP increased the carbohydrate-active enzymes (CAZymes) abundance and production of the three essential enzymes required for lignocellulose decomposition involving a mixture of bacteria and fungi (i.e., Actinobacteria, Bacilli, Sordariomycetes and Eurotiomycetes). Conversely, ASP primarily produced exoglucanase and β-glucosidase via fungi (i.e., Ascomycota). Moreover, AB effectively mitigated microbial stress caused by acetic acid accumulation by regulating the key enzymes involved in acetate conversion, including acetyl-coenzyme A synthetase and acetate kinase. Overall, the AB upgraded from ASP facilitated the lignocellulose degradation and fostered more diverse functional microbial communities in large-scale composting. Our findings offer a valuable scientific basis to guide the engineering feasibility and environmental sustainability for large-scale industrial composting plants for treating lignocellulose-rich waste. These findings have important implications for establishing green sustainable development models (e.g., a circular economy based on material recovery) and for achieving sustainable development goals.

Effective microorganism combinations improve the quality of compost-bedded pack products in heifer barns: exploring pack bacteria-fungi interaction mechanisms

BACKGROUND

Compost-bedded pack barns (CBP) are getting huge attention as an alternative housing system for dairy cows due to their beneficial impact on animal welfare. Effective microorganisms (EM) inoculums are believed to enhance compost quality, improve soil structure and benefit the environment. However, little information is available on the impact of incubation with external EM combinations on the barn environment, compost quality and microbial diversity in CBP. This experiment was carried out to investigate the effect of inoculating different combinations of EM [Lactobacillus plantarum (L), Compound Bacillus (B) and Saccharomyces cerevisiae (S)] on compost quality and microbial communities of CBP products, as well as the relationship with the heifers' barn environment. CBP barns were subjected to the following four treatments: CON with no EM inoculum, LB/LS/LBS were Incubated with weight ratios of 1:2 (L: B), 1:2 (L: S), 1:1:1 (L: B: S), respectively.

RESULTS

The EM inoculation (LB, LS, LBS) reduced the concentration of respirable particulate matter (PM10 and PM2.5) in the CBP, and decreased the serum total protein and total cholesterol levels in heifers. Notably, LBS achieved the highest content of high-density lipoprotein compared to other treatments. Microbiome results revealed that EM inoculation reduced the bacterial abundance (Chao1 index) and fungal diversity (Shannon & Simpson indexes), while increasing the relative abundance of various bacterial genera (Pseudomonas, Paracoccus, Aequorivita) and fungi (Pestalotiopsis), which are associated with cellulose decomposition that ultimately resulted in accelerating organic matter degradation and humification. Furthermore, high nutrient elements (TK&TP) and low mycotoxin content were obtained with EM inoculation, with LBS showing a particularly pronounced effect. Meanwhile, LBS contributed to a decline in the proportion of fungal pathogen categories but also led to an increase in fungal saprotroph categories.

CONCLUSION

Generally, EM inoculation positively impacted compost product quality as organic fertilizer and barn environment by modifying the abundance of cellulolytic bacteria and fungi, while inhibiting the reproduction of pathogenic microbes, especially co-supplementing with L, B and S achieved an amplifying effect.

Optimizing biochar addition strategies in combined processes: Comprehensive assessment of earthworm growth, lignocellulose degradation and vermicompost quality

The sustainable management of agricultural waste is essential for curtailing environmental contamination. To address the shortcomings of single treatment methods, this study evaluated the feasibility of combining membrane-covered composting (MC) with vermicomposting. Based on this, the integrated effects of different biochar addition strategies on the combined process were investigated. The aim was to improve the efficiency of vermicomposting while eliminating the negative effects of biochar on earthworms. Addition of biochar before membrane-covered composting increased total earthworm biomass by 25.6 - 31.4 % and reproduction rate by 13.4 - 23.9 %. Specifically, the electrical conductivity (EC) (1061.0 - 1112.0 uS/cm) of the vermicompost was significantly reduced, while the total nutrient content (42.3 - 42.6 mg/g) and germination index (GI) (103.9 - 108.4 %) were maximized. Additionally, reductions in the carbon-to-nitrogen ratio and volatile content were observed. Overall, combination process is a promising approach to improve the quality of vermicomposting. The study's results offer a novel perspective on the value-added treatment of agricultural waste.

A comparative evaluation of biochar and Paenarthrobacter sp. AT5 for reducing atrazine risks to soybeans and bacterial communities in black soil

Application of biochar and inoculation with specific microbial strains offer promising approaches for addressing atrazine contamination in agricultural soils. However, determining the optimal method necessitates a comprehensive understanding of their effects under similar conditions. This study aimed to evaluate the effectiveness of biochar and Paenarthrobacter sp. AT5, a bacterial strain known for its ability to degrade atrazine, in reducing atrazine-related risks to soybean crops and influencing bacterial communities. Both biochar and strain AT5 significantly improved atrazine degradation in both planted and unplanted soils, with the most substantial reduction observed in soils treated with strain AT5. Furthermore, bioaugmentation with strain AT5 outperformed biochar in enhancing soybean growth, photosynthetic pigments, and antioxidant defenses. While biochar promoted higher soil bacterial diversity compared to strain AT5, the latter selectively enriched specific bacterial populations. Additionally, soil inoculated with strain AT5 displayed a notable increase in the abundance of key genes associated with atrazine degradation (trzN, atzB, and atzC), surpassing the effects observed with biochar addition, thus highlighting its effectiveness in mitigating atrazine risks in soil.

Study on the quality of soybean proteins fermented by Bacillus subtilis BSNK-5: Insights into nutritional, functional, safety, and flavor properties

Microbial fermentation emerges as a promising strategy to elevate the quality of soybean proteins in food industry. This study conducted a comprehensive assessment of the biotransformation of four types of soybean proteins by Bacillus subtilis BSNK-5, a proteinase-rich bacterium. BSNK-5 had good adaptability to each protein. Soluble protein, peptides and free amino acids increased in fermented soybean proteins (FSPs) and dominant after 48-84 h fermentation, enhancing nutritional value. Extensive proteolysis of BSNK-5 also improved antioxidant and antihypertensive activities, reaching peak level after 48 h fermentation. Furthermore, excessive proteolysis effectively enhanced the generation of beneficial spermidine without producing toxic histamine after fermentation, and formed the flavor profile with 56 volatiles in 48 h FSPs. Further degradation of amino acids showed a positive correlation with off-flavors, particularly the enrichment of 3-methylbutanoic acid. These findings establish a theoretical foundation for regulating moderate fermentation by BSNK-5 to enabling the high-value utilization of soybean protein.

Effects of two strains of thermophilic nitrogen-fixing bacteria on nitrogen loss mitigation in cow dung compost

Excavating nitrogen-fixing bacteria with high-temperature tolerance is essential for the efficient composting of animal dung. In this study, two strains of thermophilic nitrogen-fixing bacteria, NF1 (Bacillus subtilis) and NF2 (Azotobacter chroococcum), were added to cow dung compost both individually (NF1, NF2) and mixed together (NF3; mixing NF1 and NF2 at a ratio of 1:1). The results showed that NF1, NF2, and NF3 inoculants increased the total Kjeldahl nitrogen level by 38.43%-55.35%, prolonged the thermophilic period by 1-13 d, increased the seed germination index by 17.81%, and the emissions of NH3 and N2O were reduced by 25.11% and 42.75%, respectively. Microbial analysis showed that Firmicutes were the predominant bacteria at the thermophilic stage, whereas Chloroflexi, Proteobacteria, and Bacteroidetes were the predominant bacteria at the mature stage. These results confirmed that the addition of the isolated strains to cow dung composting improved the bacterial community structure and benefited nitrogen retention.

Enhancing C and N turnover, functional bacteria abundance, and the efficiency of biowaste conversion using Streptomyces-Bacillus inoculation

Microbial inoculation plays a significant role in promoting the efficiency of biowaste conversion. This study investigates the function of Streptomyces-Bacillus Inoculants (SBI) on carbon (C) and nitrogen (N) conversion, and microbial dynamics, during cow manure (10% and 20% addition) and corn straw co-composting. Compared to inoculant-free controls, inoculant application accelerated the compost's thermophilic stage (8 vs 15 days), and significantly increased compost total N contents (+47%) and N-reductase activities (nitrate reductase: +60%; nitrite reductase: +219%). Both bacterial and fungal community succession were significantly affected by DOC, urease, and NH4+-N, while the fungal community was also significantly affected by cellulase. The contribution rate of Cupriavidus to the physicochemical factors of compost was as high as 83.40%, but by contrast there were no significantly different contributions (∼60%) among the top 20 fungal genera. Application of SBI induced significant correlations between bacteria, compost C/N ratio, and catalase enzymes, indicative of compost maturation. We recommend SBI as a promising bio-composting additive to accelerate C and N turnover and high-quality biowaste maturation. SBI boosts organic cycling by transforming biowastes into bio-fertilizers efficiently. This highlights the potential for SBI application to improve plant growth and soil quality in multiple contexts.

A natural consortium of thermophilic bacteria from Huancarhuaz hot spring (Ancash-Peru) for promising lignocellulose bioconversion

The lignocellulose bioconversion process is an eco-friendly and green-economy alternative technology that allows the reduction of pollution and global warming, so it is necessary for thermophilic and thermostable hydrolytic enzymes from natural sources. This research aimed to isolate cellulolytic and xylanolytic microbial consortia from Huancarhuaz hot spring (Peru) from sludge or in situ baiting cultured with or without sugarcane bagasse. According to the hydrolytic activities consortium T4 from in situ baiting was selected. It was cultivated in submerged fermentation at 65 °C, pH 6.5 for eight days using LB supplemented with sugar cane bagasse (SCB), pine wood sawdust (PWS), CMC, xylan of birchwood, or micro granular cellulose. Crude extract of culture supplemented with SCB (T4B) showed better endoglucanase and xylanase activities with higher activities at 75 °C and pH 6. In these conditions, cellulase activity was kept up to 57% after 1 h of incubation, while xylanase activity was up to 63% after 72 h. Furthermore, this crude extract released reduced sugars from pretreated SCB and PWS. According to metagenomic analysis of 16S rDNA, Geobacillus was the predominant genus. It was found thermostable genes: a type of endoglucanase (GH5), an endo-xylanase (GH10), and alkali xylanase (GH10) previously reported in Geobacillus sp. strains. Finally, Huancarhuaz hot spring harbors a genetic microbial diversity for lignocellulosic waste bioconversion in high temperatures, and the T4B consortium will be a promising source of novel extreme condition stable enzymes for the saccharification process.

The Role of Soil Microbial Consortia in Sustainable Cereal Crop Residue Management

The global escalation in cereal production, essential to meet growing population demands, simultaneously augments the generation of cereal crop residues, estimated annually at approximately 3107 × 106 Mg/year. Among different crop residue management approaches, returning them to the soil can be essential for various ecological benefits, including nutrient recycling and soil carbon sequestration. However, the recalcitrant characteristics of cereal crop residues pose significant challenges in their management, particularly in the decomposition rate. Therefore, in this review, we aim to summarize the influence of different agricultural practices on enhancing soil microbial decomposer communities, thereby effectively managing cereal crop residues. Moreover, this manuscript provides indirect estimates of cereal crop residue production in Northern Europe and Lithuania, and highlights the diverse roles of lignocellulolytic microorganisms in the decomposition process, with a particular focus on enzymatic activities. This review bridges the knowledge gap and indicates future research directions concerning the influence of agricultural practices on cereal crop residue-associated microbial consortia.

Greenhouse gas emission characteristics and influencing factors of agricultural waste composting process: A review

China, being a major agricultural nation, employs aerobic composting as an efficient approach to handle agricultural solid waste. Nevertheless, the composting process is often accompanied by greenhouse gas emissions, which are known contributors to global warming. Therefore, it is urgent to control the formation and emission of greenhouse gases from composting. This study provides a comprehensive analysis of the mechanisms underlying the production of nitrous oxide, methane, and carbon dioxide during the composting process of agricultural wastes. Additionally, it proposes an overview of the variables that affect greenhouse gas emissions, including the types of agricultural wastes (straw, livestock manure), the specifications for compost (pile size, aeration). The key factors of greenhouse gas emissions during composting process like physicochemical parameters, additives, and specific composting techniques (reuse of mature compost products, ultra-high-temperature composting, and electric-field-assisted composting) are summarized. Finally, it suggests directions and perspectives for future research. This study establishes a theoretical foundation for achieving carbon neutrality and promoting environmentally-friendly composting practices.

Impact of Aspergillus fumigatus inoculation on the composting of wood shaving bedding for horses

Equine farming generates a significant amount of waste, prompting the need for effective management. Composting enhanced by filamentous fungi holds promise for this purpose. This study focused on inoculating Aspergillus fumigatus isolates in composting horse bedding made with wood shavings (Pinus elliottii). The experiment lasted 90 days, with two treatment groups, control and inoculated, analyzing temperature, pH, electrical conductivity, total organic carbon and nitrogen content, and cellulose, hemicellulose, and lignin contents. Both treatments entered the thermophilic phase by the fourth day, reaching temperatures above 55°C and mesophilic maturation at 35 days (41 ± 0.2°C). The inoculated treatment exhibited higher electrical conductivity after 30 days and a more pronounced reduction in the total carbon content (42.85% vs. 38.29%) compared to the control. While there was no significant nitrogen difference, the inoculated treatment had a sharper reduction in carbon/nitrogen ratio, and cellulose and hemicellulose contents. Both treatments showed low coliform counts, no Salmonella sp., and reduced Strongyloides sp. larvae. Inoculating A. fumigatus in saturated horse bedding made from wood shavings improved compost quality, providing a possibility for sustainable equine farming waste treatment.

Trends and social aspects in the management and conversion of agricultural residues into valuable resources: A comprehensive approach to counter environmental degradation, food security, and climate change

The circular economy is essential as it encourages the reuse and recycling of resources while reducing waste, which ultimately helps to reduce environmental pollution and boosts economic efficiency. The current review highlights the management of agricultural and livestock residues and their conversion into valuable resources to combat environmental degradation and improve social well-being. The current trends in converting agricultural residues into useful resources emphasize the social benefits of waste management and conversion. It also emphasizes how waste conversion can reduce environmental degradation and enhance food security. Using agricultural residues can increase soil health and agricultural output while reducing pollution, greenhouse gas emissions, and resource depletion. Promoting sustainable waste-to-resource conversion processes requires a combination of strategies that address technical, economic, social, and environmental aspects. These multiple strategies are highlighted along with prospects and considerations.

The Isolation and Characterization of a Novel Psychrotolerant Cellulolytic Bacterium, Microbacterium sp. QXD-8T

Cellulolytic microorganisms play a crucial role in agricultural waste disposal. Strain QXD-8T was isolated from soil in northern China. Similarity analyses of the 16S rRNA gene, as well as the 120 conserved genes in the whole-genome sequence, indicate that it represents a novel species within the genus Microbacterium. The Microbacterium sp. QXD-8T was able to grow on the CAM plate with sodium carboxymethyl cellulose as a carbon source at 15 °C, forming a transparent hydrolysis circle after Congo red staining, even though the optimal temperature for the growth and cellulose degradation of strain QXD-8T was 28 °C. In the liquid medium, it effectively degraded cellulose and produced reducing sugars. Functional annotation revealed the presence of encoding genes for the GH5, GH6, and GH10 enzyme families with endoglucanase activity, as well as the GH1, GH3, GH39, and GH116 enzyme families with β-glucosidase activity. Additionally, two proteins in the GH6 family, one in the GH10, and two of nine proteins in the GH3 were predicted to contain a signal peptide and transmembrane region, suggesting their potential for extracellularly degrade cellulose. Based on the physiological features of the type strain QXD-8T, we propose the name Microbacterium psychrotolerans for this novel species. This study expands the diversity of psychrotolerant cellulolytic bacteria and provides a potential microbial resource for straw returning in high-latitude areas at low temperatures.

Humic acid biosynthesis and bacterial community evolution during aerobic composting of rice straw

In this study, the effects of inoculum ratio, substrate particle size and aeration rate on humic acid (HA) biosynthesis during aerobic composting of rice straw were investigated, respectively. The contents of total organic carbon, total nitrogen and HA, as well as lignocellulose degradation in the composting were evaluated, respectively. It is found that the maximal HA yield of 356.9 g kg-1 was obtained at an inoculum ratio of 20%, a substrate particle size of 0.83 mm and an aeration rate of 0.3 L·kg-1 DM min-1 in the process of composting. The changes of microbial communities and metabolic functions at different stages of the composting were also analyzed through high-throughput sequencing. The result demonstrates that Proteobacteria, Firmicutes, Bacteroidetes and Actinobacteria were the dominant phyla and their relative abundance significantly varied over time (p < 0.05), and Rhizobium, Phenylobacterium, Pseudoxanthomonas and Paenibacillus were positively related to HA content in the compost. Furthermore, the metabolic function profiles of bacterial community indicate that these functional genes in carbohydrate metabolism and amino acid metabolism were involved in lignocellulose biodegradation and HA biosynthesis. This work may be conducive to explore new regulation strategy to improve bioconversion efficiency of agricultural residues to applicable biofertilizers. KEY POINTS: • Temperature, pH, TOC, TN and C/N caused a great influence on humic acids synthesis • The succession of the microbial community during the composting were evaluated • The metabolisms of carbohydrate and amino acids were involved in HA synthesis.

Enhanced humus synthesis from Chinese medicine residues composting by lignocellulose-degrading bacteria stimulation: Upregulation of key enzyme activity and neglected indirect effects on humus formation

Chinese medicine residues (CMHRs) resource is attracting widespread attention, as it is expected to be produced into Humus-rich fertilizer for soil application. This study aimed to promote effective humus (HS) production through lignocellulose-degrading bacteria (LDB) addition and explore the biological regulation mechanism of LDB affecting lignocellulose-to-humus conversion. The results showed higher HS production was achieved, with 109.73 and 111.44 g·kg-1, and HA/FA was raised by 12.70-16.02 % in compost products by LDB addition stimulation. Significant upregulation of β-glucanase and xylanase activities catalyzed higher decomposition of lignocellulose toward more HS potential precursors supply. Furthermore, exogenous LDB intervention induced microbial community restructure and microbial network establishment via enriching synergism functional bacteria, i.e., Thermobifida, Paenibacillus, Nonomuraea, etc. Mantel test results showed that it was variation of cellulose, hemicellulose and HS that affected microbial community succession (p < 0.01, r > 0.6), which represented the positive action of LDB addition stimulation on HS synthesis upregulation. Further exploration suggested LDB had an indirect effect on HS formation by enhanced lignin and hemicellulose conversion based on the Random Forest model and Partial least-squares path modeling results. This research provides new insights into the trigger effects of LDB introduction on upregulating HS synthesis and is expected to propose new perspectives for HS efficient production in CMHRs composting.

Mitigation of soil N2O emissions by decomposed straw based on changes in dissolved organic matter and denitrifying bacteria

The return of decomposed straw represents a less explored potential option for reducing N2O emissions. However, the mechanisms underlying the effects of decomposed straw return on soil N2O mitigation are still not fully clear. Therefore, we used a helium atmosphere robotized continuous flow incubation system to compare the soil N2O and N2 emissions from four treatments: CK (control: no straw), WS (wheat straw), IWS (wheat straw decomposed with Irpex lacteus), and PWS (wheat straw decomposed with Phanerochaete chrysosporium). All the treatments have been fertilized with the same amount of KNO3. Furthermore, we also analyzed i) the chemodiversity of soil dissolved organic matter (DOM), ii) the nirS, nirK, and nosZ gene copies and relative abundances of denitrifying bacterial communities (DBCs), and iii) the specific linkages between N2O emissions and DOM and DBC. The results showed that the WS, IWS and PWS treatments increased N2O emissions compared to the CK treatment. However, applying decomposed straw to soil, especially straw treated with P. chrysosporium, effectively decreased the soil N2O and increased N2 emissions compared to WS and IWS. Moreover, the IWS and PWS treatments increased the CHO composition, but they decreased the CHON and CHOS compositions of heteroatomic compounds of DOM compared with the WS and CK treatments. Furthermore, the WS, IWS and PWS treatments all significantly increased the nirS and nosZ gene copies compared with the CK treatment. Additionally, compared with the other treatments, the PWS treatment significantly shaped the DBC and led to a higher relative abundance of Pseudomonas with nirS and nosZ genes. Meanwhile, Network analysis showed that the mitigation of N2O was closely related to particular DOM molecules, and specific DBC taxa. These results highlight the potential for decomposed straw amendments to mitigate of soil N2O emissions not only by changing soil DOM but also mediating the soil DBC.

Exploitation of lignocellulosic-based biomass biorefinery: A critical review of renewable bioresource, sustainability and economic views

Urbanization has driven the demand for fossil fuels, however, the overly exploited resource has caused severe damage on environmental pollution. Biorefining using abundant lignocellulosic biomass is an emerging strategy to replace traditional fossil fuels. Value-added lignin biomass reduces the waste pollution in the environment and provides a green path of conversion to obtain renewable resources. The technology is designed to produce biofuels, biomaterials and value-added products from lignocellulosic biomass. In the biorefinery process, the pretreatment step is required to reduce the recalcitrant structure of lignocellulose biomass and improve the enzymatic digestion. There is still a gap in the full and deep understanding of the biorefinery process including the pretreatment process, thus it is necessary to provide optimized and adapted biorefinery solutions to cope with the conversion process in different biorefineries to further provide efficiency in industrial applications. Current research progress on value-added applications of lignocellulosic biomass still stagnates at the biofuel phase, and there is a lack of comprehensive discussion of emerging potential applications. This review article explores the advantages, disadvantages and properties of pretreatment methods including physical, chemical, physico-chemical and biological pretreatment methods. Value-added bioproducts produced from lignocellulosic biomass were comprehensively evaluated in terms of encompassing biochemical products , cosmetics, pharmaceuticals, potent functional materials from cellulose and lignin, waste management alternatives, multifunctional carbon materials and eco-friendly products. This review article critically identifies research-related to sustainability of lignocellulosic biomass to promote the development of green chemistry and to facilitate the refinement of high-value, environmentally-friendly materials. In addition, to align commercialized practice of lignocellulosic biomass application towards the 21st century, this paper provides a comprehensive analysis of lignocellulosic biomass biorefining and the utilization of biorefinery green technologies is further analyzed as being considered sustainable, including having potential benefits in terms of environmental, economic and social impacts. This facilitates sustainability options for biorefinery processes by providing policy makers with intuitive evaluation and guidance.

Fertilization of Microbial Composts: A Technology for Improving Stress Resilience in Plants

Microbial compost plays a crucial role in improving soil health, soil fertility, and plant biomass. These biofertilizers, based on microorganisms, offer numerous benefits such as enhanced nutrient acquisition (N, P, and K), production of hydrogen cyanide (HCN), and control of pathogens through induced systematic resistance. Additionally, they promote the production of phytohormones, siderophore, vitamins, protective enzymes, and antibiotics, further contributing to soil sustainability and optimal agricultural productivity. The escalating generation of organic waste from farm operations poses significant threats to the environment and soil fertility. Simultaneously, the excessive utilization of chemical fertilizers to achieve high crop yields results in detrimental impacts on soil structure and fertility. To address these challenges, a sustainable agriculture system that ensures enhanced soil fertility and minimal ecological impact is imperative. Microbial composts, developed by incorporating characterized plant-growth-promoting bacteria or fungal strains into compost derived from agricultural waste, offer a promising solution. These biofertilizers, with selected microbial strains capable of thriving in compost, offer an eco-friendly, cost-effective, and sustainable alternative for agricultural practices. In this review article, we explore the potential of microbial composts as a viable strategy for improving plant growth and environmental safety. By harnessing the benefits of microorganisms in compost, we can pave the way for sustainable agriculture and foster a healthier relationship between soil, plants, and the environment.

Batch-fed composting of food waste: Microbial diversity characterization and removal of antibiotic resistance genes

The aim of this work was to study the impact of batch-fed strategies on bacterial communities and ARGs in compost. The findings demonstrate that batch-feeding helped maintain high temperatures in the compost pile for an extended period (above 50 °C for 18 days), which in turn facilitated water dissipation. High-throughput sequencing showed that Firmicutes played a significant role in batch-fed composting (BFC). They had a high relative abundance at the beginning (98.64%) and end (45.71%) of compost. Additionally, BFC showed promising results in removing ARGs, with reductions of 3.04-1.09 log copies/g for Aminoglycoside and 2.26-2.44 log copies/g for β_Lactamase. This study provides a comprehensive survey of BFC and demonstrates its potential for eliminating resistance contamination in compost.

Long-term microbial community succession and mechanisms of regulation of dissolved organic matter derivation in livestock manure fermentation system

Industrial-scale aerobic fermentation was conducted with livestock manures. Microbial inoculation promoted the growth of Bacillaceae and consolidated its position as the dominant microorganism. Microbial inoculation substantially influenced dissolved organic matter (DOM) derivation and variations of related components in the fermentation system. The relative abundance of humic acid-like substances of DOM increased from 52.19% to 78.27% in microbial inoculation system, resulting in a high humification level. Moreover, lignocellulose degradation and microbial utilization were the important factors influencing DOM content in fermentation systems. The fermentation system was regulated by microbial inoculation, thus achieving a high level of fermentation maturity.

The temporal profile of GH1 gene abundance and the shift in GH1 cellulase-producing microbial communities during vermicomposting of corn stover and cow dung

Vermicomposting is a promising method for corn stover management to achieve bioresource recovery and environmental protection. Most β-glucosidases, which limit the cellulose degradation rate during vermicomposting of corn stover, belong to glycoside hydrolase family 1 (GH1). This study was conducted with different earthworm densities to quantify the GH1 gene abundance and investigate the evolution of GH1 cellulase-producing microbial communities using qPCR and pyrosequencing. The results showed that β-glucosidase activity, GH1 gene abundance, TOC, and microbial communities carrying the GH1 gene were affected by processing time and earthworm density. After introducing earthworms, β-glucosidase activity increased to 1.90-2.13 U/g from 0.54 U/g. The GH1 gene abundance of treatments with earthworms (5.82E+09-6.70E+09 copies/g) was significantly higher than that of treatments without earthworms (2.48E+09 copies/g) on Day 45. Earthworms increased the richness of microbial communities. The relative abundances of Sphingobium and Dyadobacter, which are dominant genera harboring the GH1 gene, were increased by earthworms to peak values of 23.90% and 11.20%, respectively. Correlation analysis showed that Sphingobium, Dyadobacter, Trichoderma, and Starkeya were positively associated with β-glucosidases. This work sheds new light on the mechanism of cellulose degradation during vermicomposting at the molecular level.

Pretreatment and composting technology of agricultural organic waste for sustainable agricultural development

With the continuous development of agriculture, Agricultural organic waste (AOW) has become the most abundant renewable energy on earth, and it is a hot spot of research in recent years to realize the recycling of AOW to achieve sustainable development of agricultural production. However, lignocellulose, which is difficult to degrade in AOW, greenhouse gas emissions, and pile pathogenic fungi and insect eggs are the biggest obstacles to its return to land use. In response to the above problems researchers promote organic waste recycling by pretreating AOW, controlling composting conditions and adding other substances to achieve green return of AOW to the field and promote the development of agricultural production. This review summarizes the ways of organic waste treatment, factors affecting composting and problems in composting by researchers in recent years, with a view to providing research ideas for future related studies.

Environmental factors induced macrolide resistance genes in composts consisting of erythromycin fermentation residue, cattle manure, and maize straw

With the growing concerns about antibiotic resistance, it is more and more important to prevent the environmental pollution caused by antibiotic fermentation residues. In this study, composted erythromycin fermentation residue (EFR) with the mixture of cattle manure and maize straw at ratios of 0:10 (CK), 1:10 (T1), and 3:10 (T2) explores the effects on physicochemical characteristics, mobile genetic elements (MGEs), and antibiotic resistance genes (ARGs). Results reflected that the addition of EFR reduced the carbon/nitrogen ratio of each compost and improved the piles' temperature, which promoted the composting process. However, the contents of Na⁺, SO₄^2-, and erythromycin were also significantly increased. After 30 days of composting, the degradation rates of erythromycin in CK, T1, and T2 were 72.7%, 20.3%, and 37.1%, respectively. Meanwhile, the total positive rates for 26 detected ARGs in T1 and T2 were 65.4%, whereas that of CK was only 23.1%. Further analysis revealed that ARGs responsible for ribosomal protection, such as ermF, ermT, and erm(35), dominated the composts of T1 and T2, and most were correlated with IS613, electrical conductivity (EC), nitrogen, and Zn²⁺. Above all, adding EFR helps to improve the nutritional value of composts, but the risks in soil salinization and ARG enrichment caused by high EC and erythromycin content should be further investigated and eliminated.

Applications of agricultural residue biochars to removal of toxic gases emitted from chemical plants: A review

Crop residues are representative agricultural waste materials, massively generated in the world. However, a large fraction of them is currently being wasted, though they have a high potential to be used as a value-added carbon-rich material. Also, the applications of carbon-rich materials from agricultural waste to industries can have economic benefit because waste-derived carbon materials are considered inexpensive waste materials. In this review, valorization methods for crop residues as carbon-rich materials (i.e., biochars) and their applications to industrial toxic gas removals are discussed. Applications of crop residue biochars to toxic gas removal can have significant environmental benefits and economic feasibility. As such, this review discussed the technical advantages of the use of crop residue biochars as adsorbents for hazardous gaseous pollutants and greenhouse gases (GHGs) stemmed from combustion of fossil fuels and the different refinery processes. Also, the practical benefits from the activation methods in line with the biochar properties were comprehensively discussed. The relationships between the physico-chemical properties of biochars and the removal mechanisms of gaseous pollutants (H₂S, SO₂, Hg⁰, and CO₂) on biochars were also highlighted in this review study. Porosity controls using physical and chemical activations along with the addition of specific functional groups and metals on biochars have significantly contributed to the enhancement of flue gas adsorption. The adsorption capacity of biochar for each toxic chemical was in the range of 46-76 mg g^-1 for H₂S, 40-182 mg g^-1 for SO₂, 80-952 μg g^-1 for Hg⁰, and 82-308 mg g^-1 CO₂, respectively. This helps to find suitable activation methods for adsorption of the target pollutants. In the last part, the benefits from the use of biochars and the research directions were prospectively provided to make crop residue biochars more practical materials in adsorption of pollutant gases.

Development of genetic tools for heterologous protein expression in a pentose-utilizing environmental isolate of Pseudomonas putida

Pseudomonas putida has emerged as a promising host for the conversion of biomass-derived sugars and aromatic intermediates into commercially relevant biofuels and bioproducts. Most of the strain development studies previously published have focused on P. putida KT2440, which has been engineered to produce a variety of non-native bioproducts. However, P. putida is not capable of metabolizing pentose sugars, which can constitute up to 25% of biomass hydrolysates. Related P. putida isolates that metabolize a larger fraction of biomass-derived carbon may be attractive as complementary hosts to P. putida KT2440. Here we describe genetic tool development for P. putida M2, a soil isolate that can metabolize pentose sugars. The functionality of five inducible promoter systems and 12 ribosome binding sites was assessed to regulate gene expression. The utility of these expression systems was confirmed by the production of indigoidine from C6 and C5 sugars. Chromosomal integration and expression of non-native genes was achieved by using chassis-independent recombinase-assisted genome engineering (CRAGE) for single-step gene integration of biosynthetic pathways directly into the genome of P. putida M2. These genetic tools provide a foundation to develop hosts complementary to P. putida KT2440 and expand the ability of this versatile microbial group to convert biomass to bioproducts.

Kinetics of combined hydrothermal pretreatment and anaerobic digestion of lignocellulosic biomass (pepper plant and eggplant)

A large quantity of lignocellulosic biomass is generated annually across the world which leads to environmental pollution and requires valorization. This study investigated the effect of hydrothermal pretreatment on the anaerobic digestion and co-digestion of the residual pepper plant and eggplant with a focus on kinetics. Two thermal hydrolysis rates were observed, with the optimal conditions for the hydrothermal pretreatment of lignocellulosic biomass being 120°C for 40 min. Subsequently, single and combined biomethanization was successfully carried out in laboratory-scale completely stirred tank reactors at mesophilic temperature (35°C). A high increase in methane production was observed after the pretreatment of the pepper plant and eggplant. The pretreated and co-digested wastes led to an optimal methane yield of 79 ± 23 mL CH₄/g VS. The modified Gompertz model was used to fit the cumulative methane production of the pretreated lignocellulosic substrates. The kinetic model adequately reproduced the experimental results and might be considered a useful tool to simulate the biomethanization behaviour of complex organic substrates.

Emerging technologies of employing algae and microorganisms to promote the return-to-field of crop straws: A mini-review

As an agricultural waste, crop straw enriched with a variety of nutrients is regarded as an important fertilizer resource. In the past, crop straw return-to-field played a key role in the sustainability of agricultural environment, but some problems, such as ammonia loss in ammoniation, low rate of straw decomposition, and high carbon footprint, attracted researchers' attentions. In this paper, we propose three technical routes, including cyanobacteria-based ammonia assimilation, microorganisms-based crop straw pretreatment, and microalgae-based carbon capture, to address the aforementioned problems. Besides, challenges which may hinder the practical application of these technical routes as well as the potential solutions are discussed in detail. It is expected that this paper could provide new ideas to the practical application of crop straw return-to-field.

Independent and combined effects of biochar and microbial agents on physicochemical parameters and microbial community succession during food waste composting

This study evaluated the independent and combined effects of biochar and microbial agents on food waste composting. The results indicated that combined addition increased the peak temperature to 63.5 °C and extended the thermophilic periods to 8 days, resulting in the highest organic matter degradation rate (12.7%). Analysis of enzymatic activity indicated that combined addition increased urease and dehydrogenase activity by 22.9% and 26.5%. Furthermore, the degradation of volatile fatty acids also increased by 37.4% with combined addition. Microbial analysis demonstrated that combined addition effectively increased the relative abundances of Enterobacter, Sphingobacterium and Aspergillus, which could be attributed to the optimal environment provided by biochar and stimulation of microbial agents. Moreover, correlation analysis showed a strong interaction between the microbial community and environment with combined addition. In general, combined addition could be beneficial for composting based on the synergistic effects of biochar and inoculation on microorganism.

Microbial co-occurrence networks driven by low-abundance microbial taxa during composting dominate lignocellulose degradation

Lignocellulose, which contains cellulose, hemicellulose and lignin, is one of the most important factors determining the rate and quality of compost decomposition, and the microbial community composition affects the rate of lignocellulose decomposition. Interactions between microbial taxa contribute significantly to ecosystem energy flow and material cycling. However, it is not clear how interactions between microbial taxa affect the degradation of lignocellulose during the composting process. For this reason we carried out aerobic co-composting experiments with maize straw and cattle manure to explore the contribution of microbial community diversity and the interaction between taxa to lignocellulosic degradation. The results showed that moisture and temperature had the greatest effect on microbial communities during composting and that lignocellulose degradation was dominated by microbial co-occurrence networks rather than microbial community diversity. Overall co-occurrence network and bacterial-fungal interactions explained 23.9-84.1 % of lignocellulosic degradation, whereas microbial diversity only accounted for 24.6-31.5 %. Interestingly, keystone taxa analysis of the microbial co-occurrence networks revealed that low-abundance taxa influenced microbial interactions driving lignocellulose degradation. Our results provide a new perspective for understanding lignocellulose degradation during composting, offering insights into important microbial interaction mechanisms for improving compost quality and efficiency.

Potential of lignocellulose degrading microorganisms for agricultural residue decomposition in soil: A review

Lignocellulosic crop residues (LCCRs) hold a significant share of the terrestrial biomass, estimated at 5 billion Mg per annum globally. A massive amount of these LCCRs are burnt in many countries resulting in immense environmental pollution; hence, its proper disposal in a cost-effective and eco-friendly manner is a significant challenge. Among the different options for management of LCCRs, the use of lignocellulose degrading microorganisms (LCDMOs), like fungi and bacteria, has emerged as an eco-friendly and effective way for its on-site disposal. LCDMOs achieve degradation through various mechanisms, including multiple supportive enzymes, causing oxidative attacks by which recalcitrance of lignocellulose material is reduced, paving the way to further activity by depolymerizing enzymes. This improves the physical properties of soil, recycles plant nutrients, promotes plant growth and thus helps improve productivity. Rapid and proper microbial degradation may be achieved through the correct combination of the LCDMOs, supplementing nutrients and controlling different factors affecting microbial activity in the field. The review is a critical discussion of previous studies revealing the potential of individuals or a set of LCDMOs, factors controlling the rate of degradation and the key researchable areas for better understanding of the role of these decomposers for future use.

Production of biochar from crop residues and its application for biofuel production processes - An overview

A sustainable carbon-neutral society is imperative for future generations, and biochars and biofuels are inevitable choice to achieve this goal. Crop residues (CR) such as sugarcane bagasse, corn stover, and rice husk are promising sustainable resources as a feedstock for biochars and biofuels. Extensive research has been conducted on CR-based biochar production not only in environmental remediation areas but also in application for biofuel production. Here, the distribution and resource potential of major crop residues are presented. The production of CR-biochar and its applications in biofuel production processes, focusing on the latest research are discussed. Finally, the challenges and areas of opportunity for future research in terms of CR supply, CR-biochar production, and CR-biochar utilization for biofuel production are proposed. Compared with other literature reviews, this study can serve as a guide for the establishment of sustainable, economical, commercial CR-based biorefineries.

Role of psychrotrophic bacteria and cold-active enzymes in composting methods adopted in cold regions

Temperature-dependent composting is a challenging task but is worthy if it is done in the right manner. Cold composting has been known to be practiced since ancient times but there were not enough advancements to overcome the long mesophilic phase and bring the compost maturation to a short period. The composting processes that have been well practiced are discussed and the role of psychrotrophic bacteria that produce cold tolerant hydrolytic enzymes has been highlighted. In this chapter, the mechanism of substrate degradation has been elaborated to better understand the need of specific bacteria for a specific kind of substrate allowing fast and efficient decomposition. This chapter attempts to pave an appropriate way and suggest the best-suited method of composting for efficient production of compost by the conservation of heat in cold regions.

Straw waste promotes microbial functional diversity and lignocellulose degradation during the aerobic process of pig manure in an ectopic fermentation system via metagenomic analysis

This study compares the physicochemical properties, lignocellulose degradation, microbial community composition, and carbohydrate-active enzymes (CAZymes) in ectopic fermentation systems (EFS) of pig manure mixed with either conventional padding (C) or straw waste (A). The degradation rates of cellulose, hemicellulose, and lignin were found to be significantly higher in A (27.72%, 22.72%, and 18.80%, respectively) than in C (21.05%, 16.17%, and 11.69%, respectively) owing to the activities of lignocellulolytic enzymes. Metagenomics revealed that straw addition had a stronger effect on the bacterial community succession than fungi. The abundances of Sphingobacterium, Pseudomonas, and CAZymes were higher in A than in C, as well as the auxiliary activity enzymes, which are crucial for lignocellulose degradation. Redundancy analysis indicates a positive correlation between lignocellulose degradation and Sphingobacterium, Pseudomonas, Bacillus, and Actinobacteria contents. A structural equation model was applied to further verify that the increased microbial functional diversity was the primary driver of lignocellulosic degradation, which could be effectively regulated by the enhanced temperature with straw addition. Replacing traditional padding with straw can thus accelerate lignocellulosic degradation, promote microbial functional diversity, and improve the EFS efficiency.

Deciphering the internal driving mechanism of microbial community for carbon conversion and nitrogen fixation during food waste composting with multifunctional microbial inoculation

In this study, the effects of multifunctional microbial inoculation on food waste composting based on the synergistic property between organic matter degradation and nitrogen fixation were investigated. The results showed that inoculation simultaneously strengthened organic matter degradation by 9.9% and improved the nitrogen content by 20.6% compared with that of the control group. Additionally, spectral analysis demonstrated that inoculation was conducive to the enhanced humification, which was supported by the improvement in polyphenol oxidase activity. Microbial analysis showed that most of the introduced microorganisms (Bacillus, Streptomyces, Saccharomonospora) successfully colonized, and stimulated the growth of other indigenous microorganisms (Enterobacter, Paenibacillus). Meanwhile, the change in microbial community structure was accompanied by the enhanced tricarboxylic acid cycle and amino acid metabolism. Furthermore, network analysis and structural equation model revealed that the enhanced cooperation of microorganisms, in which more carbon sources could be provided by cellulose decomposition for nitrogen fixation.

Microbial inoculants reshape structural distribution of complex components of humic acid based on spectroscopy during straw waste composting

This study aimed to explore the mechanism of actinomycetes inoculation to promote humification based on spectroscopy during straw waste composting. Results showed that inoculating actinomycetes could significantly increase the humification index and humification ratio, which were 2.53% and 21.79% respectively (P < 0.05). A spectroscopic analysis suggested that actinomycetes promoted the relative content of complex components of humic acid and reshaped the structural distribution of two sub fluorescence peaks in it. Furthermore, variance partitioning analysis demonstrated that compared with the intensity, the high-quality uniform distribution of fluorescence peaks had a greater contribution to the improvement of humification. In addition, structural equation model further verified that actinomycetes inoculation promoted the transformation of fulvic acid to humic acid, and then promoted the formation of humic acid. Therefore, actinomycetes inoculation can promote the humification of straw compost by reshaping the complex components of humic acid.

In-situ generation of H2O2 by zero valent iron to control depolymerization of lignocellulose in composting niche

Lignocellulosic degradation is a bottleneck of bioconversion during the composting process. In-situ generation of H₂O₂ in the composting system was an ideal method for efficiently promoting lignocellulase degradation, and zero valent iron (ZVI) was concerned because it can generate H₂O₂ by reducing dissolved oxygen. This study focused on the effects of ZVI treatment on lignocellulose degradation, microbial communities, and carbohydrate-active enzymes (CAZymes) genes during composting. Its results indicated that ZVI increased H₂O₂ content during composting, accompanied by the formation of •OH. The degradation rates of lignin, cellulose and hemicellulose in ZVI group (20.77%, 30.35% and 44.7%) were significantly higher than in CK group (17.01%, 26.12% and 38.5%). Metagenomic analysis showed that ZVI induced microbial growth that favored lignocellulose degradation, which increased the abundance of Actinobacteria and Firmicutes but reduced Proteobacteria. At the genus level, the abundance of Thermomonospora, Streptomyces, and Bacillus significantly increased. In addition, glycoside hydrolases and auxiliary activities were important CAZymes families of lignocellulose degradation, and their abundance was higher in the ZVI group. Redundancy analysis showed that the increased H₂O₂ and •OH content was a critical factor in improving lignocellulose degradation. Overall, H₂O₂ as a co-substrate enhanced the enzymatic efficiency, •OH unspecifically attacked lignocellulose, and the increase in functional microbial abundance was the main reason for promoting lignocellulose degradation in composting.