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Wu Y, Wang H, Peng L, Zhao H, Zhang Q, Tao Q, Tang X, Huang R, Li B, Wang C. Root-soil-microbiome interaction in the rhizosphere of Masson pine (Pinus massoniana) under different levels of heavy metal pollution. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2024; 283:116779. [PMID: 39083870 DOI: 10.1016/j.ecoenv.2024.116779] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2024] [Revised: 07/05/2024] [Accepted: 07/22/2024] [Indexed: 08/02/2024]
Abstract
Heavy metal pollution of the soil affects the environment and human health. Masson pine is a good candidate for phytoremediation of heavy metal in mining areas. Microorganisms in the rhizosphere can help with the accumulation of heavy metal in host plants. However, studies on its rhizosphere bacterial communities under heavy metal pollution are still limited. Therefore, in this study, the chemical and bacterial characteristics of Masson pine rhizosphere under four different levels of heavy metal pollution were investigated using 16 S rRNA gene sequencing, soil chemistry and analysis of plant enzyme activities. The results showed that soil heavy metal content, plant oxidative stress and microbial diversity damage were lower the farther they were from the mine dump. The co-occurrence network relationship of slightly polluted soils (C1 and C2) was more complicated than that of highly polluted soils (C3 and C4). Relative abundance analysis indicated Sphingomonas and Pseudolabrys were more abundant in slightly polluted soils (C1 and C2), while Gaiella and Haliangium were more abundant in highly polluted soils (C3 and C4). LEfSe analysis indicated Burkholderiaceae, Xanthobacteraceae, Gemmatimonadaceae, Gaiellaceae were significantly enriched in C1 to C4 site, respectively. Mantel analysis showed that available cadmium (Cd) contents of soil was the most important factor influencing the bacterial community assembly. Correlation analysis showed that eight bacterial genus were significantly positively associated with soil available Cd content. To the best of our knowledge, this is the first study to investigate the rhizospheric bacterial community of Masson pine trees under different degrees of heavy metal contamination, which lays the foundation for beneficial bacteria-based phytoremediation using Masson pines in the future.
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Affiliation(s)
- Yingjie Wu
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China.
| | - Haidong Wang
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Lu Peng
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Haiyang Zhao
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Qiannian Zhang
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Qi Tao
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Xiaoyan Tang
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Rong Huang
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Bing Li
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Changquan Wang
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China.
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Liu R, Yao Y, Chu Q, Wei D, Wang X, Zhang S. Enhanced soil microbial stability is associated with soil organic carbon storage under high-altitude forestation. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 370:122462. [PMID: 39270342 DOI: 10.1016/j.jenvman.2024.122462] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2023] [Revised: 09/02/2024] [Accepted: 09/07/2024] [Indexed: 09/15/2024]
Abstract
The potential of forestation to mitigate climate warming depends largely on whether it can improve terrestrial carbon (C) storage. Changes in soil microbial stability can cause ecosystem C fluctuations. Unfortunately, it remains unclear whether forestation alters soil microbial stability with cascading effects on C storage in high-altitude ecosystems. In this study, a total of 14 typical planted forests were selected on the Tibetan Plateau. We showed that high-altitude forestation, particularly with poplars, altered the microbial diversity and potentially improved the stability of soil microbial communities. These changes were associated with soil C accumulation and potentially positive feedback on soil organic C storage. Variations in the microbial community stability were mostly caused by changes in soil bulk density and dissolved organic C. Superior network stability was found in fungal community rather than bacterial community. Additionally, there were strong interactions between bacterial and fungal communities that influenced soil C storage. These findings contribute to understand the differences and relationships between bacteria and fungi in plantation soils. This work reveals the potential of high-altitude forestation to mitigate climate warming through insights into the microbial-mediated mechanisms responsible for soil C storage in high-altitude ecosystems.
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Affiliation(s)
- Ruixuan Liu
- Key Laboratory for Bio-resource and Eco-environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China
| | - Yuan Yao
- Key Laboratory for Bio-resource and Eco-environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China
| | - Qiwen Chu
- Key Laboratory for Bio-resource and Eco-environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China
| | - Da Wei
- Key Laboratory of Mountain Surface Processes and Ecological Regulation, Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu, 610299, China
| | - Xiaodan Wang
- Key Laboratory of Mountain Surface Processes and Ecological Regulation, Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu, 610299, China
| | - Sheng Zhang
- Key Laboratory for Bio-resource and Eco-environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China.
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Huang X, Hong Y, Li Q, Liu Z, Liu K. Characteristics and driving forces of the soil microbial community during 35 years of natural restoration in abandoned areas of the Daxin manganese mine, China. ENVIRONMENTAL GEOCHEMISTRY AND HEALTH 2024; 46:413. [PMID: 39230730 DOI: 10.1007/s10653-024-02204-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2024] [Accepted: 08/28/2024] [Indexed: 09/05/2024]
Abstract
The restoration of mining wastelands, particularly in karst regions contaminated by heavy metals, is an environmental challenge in need of urgent attention. Soil microbes play a vital role in nutrient cycling and ecosystem recovery, yet the long-term evolution of soil microbial communities in such settings remains poorly understood. This study explored the dynamics and influencing factors of soil microbial communities during 35 years of natural restoration in abandoned manganese (Mn) mine areas in Guangxi Province, China. The results revealed that the concentrations of Mn, Cd, Zn, and Cu were significantly (p < 0.05) reduced by 80.4-85.3%, 55.3-70.0%, 21.0-38.1%, and 29.4-49.4%, respectively, in the mid-late restoration periods (R19 and R35) compared with R1. The α diversities of the bacterial and fungal communities significantly increased in the middle-late restoration periods (R19 and R35), indicating increased microbial diversity as restoration progressed. The bacterial community structure exhibited more pronounced changes than did the fungal community structure, with significant shifts observed in dominant phyla such as Proteobacteria, Actinobacteria, Acidobacteriota, and Ascomycota. Notably, the relative abundances of Rhizobiales, Burkholderiales, and Hypocreales increased gradually with succession. Co-occurrence network analysis revealed that bacterial interactions became stronger over time, whereas interactions between bacteria and fungi weakened. Mantel tests and partial least squares path modeling (PLS‒PM) identified soil pH, heavy metals (Mn, Cd, Zn, and Cu), and nutrients (SOM and TN) as key drivers shaping the microbial community composition. These factors were more strongly correlated with bacterial communities than with fungal communities, underscoring the different responses of microbial groups to environmental changes during natural restoration. These findings enhance our understanding of the ecological processes governing microbial community succession in heavy metal-contaminated soils undergoing natural restoration.
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Affiliation(s)
- Xiaofang Huang
- Key Laboratory of Ecology of Rare and Endangered Species and Environmental Protection (Guangxi Normal University), Ministry of Education, Guilin, 541004, China
| | - Yanyan Hong
- Key Laboratory of Ecology of Rare and Endangered Species and Environmental Protection (Guangxi Normal University), Ministry of Education, Guilin, 541004, China
| | - Quanzeng Li
- Key Laboratory of Ecology of Rare and Endangered Species and Environmental Protection (Guangxi Normal University), Ministry of Education, Guilin, 541004, China
| | - Zongbao Liu
- Key Laboratory of Ecology of Rare and Endangered Species and Environmental Protection (Guangxi Normal University), Ministry of Education, Guilin, 541004, China.
| | - Kehui Liu
- Key Laboratory of Ecology of Rare and Endangered Species and Environmental Protection (Guangxi Normal University), Ministry of Education, Guilin, 541004, China.
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Xia F, Liu Z, Zhang Y, Li Q, Zhao M, He H, Bao Q, Chen B, He Q, Lai C, He X, Ma Z, Zhou Y. Calcium regulates the interactions between dissolved organic matter and planktonic bacteria in Erhai Lake, Yunnan Province, China. WATER RESEARCH 2024; 261:121982. [PMID: 38936236 DOI: 10.1016/j.watres.2024.121982] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Revised: 05/27/2024] [Accepted: 06/20/2024] [Indexed: 06/29/2024]
Abstract
In recent years, the global carbon cycle has garnered significant research attention. However, details of the intricate relationship between planktonic bacteria, hydrochemistry, and dissolved organic matter (DOM) in inland waters remain unclear, especially their effects on lake carbon sequestration. In this study, we analyzed 16S rRNA, chromophoric dissolved organic matter (CDOM), and inorganic nutrients in Erhai Lake, Yunnan Province, China. The results revealed that allochthonous DOM (C3) significantly regulated the microbial community, and that autochthonous DOM, generated via microbial mineralization (C2), was not preferred as a food source by lake bacteria, and neither was allochthonous DOM after microbial mineralization (C4). Specifically, the correlation between the fluorescence index and functional genes (FAPRPTAX) showed that the degree of utilization of DOM was a critical factor in regulating planktonic bacteria associated with the carbon cycle. Further examination of the correlation between environmental factors and planktonic bacteria revealed that Ca2+ had a regulatory influence on the community structure of planktonic bacteria, particularly those linked to the carbon cycle. Consequently, the utilization strategy of DOM by planktonic bacteria was also determined by elevated Ca2+ levels. This in turn influenced the development of specific recalcitrant autochthonous DOM within the high Ca2+ environment of Erhai Lake. These findings are significant for the exploration of the stability of DOM within karst aquatic ecosystems, offering a new perspective for the investigation of terrestrial carbon sinks.
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Affiliation(s)
- Fan Xia
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China; State Key Laboratory of Environmental Geochemistry, Institute of Geochemistry, CAS, Guiyang 550081, China
| | - Zaihua Liu
- State Key Laboratory of Environmental Geochemistry, Institute of Geochemistry, CAS, Guiyang 550081, China; CAS Center for Excellence in Quaternary Science and Global Change, Xi'an 710061, China.
| | - Yunling Zhang
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China
| | - Qiang Li
- Key Laboratory of Karst Dynamics, Ministry of Nature Resources/Guangxi, Institute of Karst Geology, Chinese Academy of Geological Sciences, Guilin 541004, China
| | - Min Zhao
- State Key Laboratory of Environmental Geochemistry, Institute of Geochemistry, CAS, Guiyang 550081, China
| | - Haibo He
- State Key Laboratory of Environmental Geochemistry, Institute of Geochemistry, CAS, Guiyang 550081, China
| | - Qian Bao
- Key Laboratory of Land Resources Evaluation and Monitoring in Southwest (Sichuan Normal University), Ministry of Education, Chengdu, 610068, China
| | - Bo Chen
- Guizhou University of Finance and Economics, Guiyang 550025, China
| | - Qiufang He
- Chongqing Key Laboratory of Karst Environment & School of Geographical Sciences, Southwest University, Chongqing 400700, China; Key Laboratory of Karst Dynamics, Ministry of Nature Resources/Guangxi, Institute of Karst Geology, Chinese Academy of Geological Sciences, Guilin 541004, China
| | - Chaowei Lai
- State Key Laboratory of Environmental Geochemistry, Institute of Geochemistry, CAS, Guiyang 550081, China
| | - Xuejun He
- State Key Laboratory of Environmental Geochemistry, Institute of Geochemistry, CAS, Guiyang 550081, China
| | - Zhen Ma
- State Key Laboratory of Environmental Geochemistry, Institute of Geochemistry, CAS, Guiyang 550081, China
| | - Yongqiang Zhou
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China
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Zhang Q, Liu X, Peng S, Dong W, Chen Z. One-year monitoring of grass-type architectural waterscapes with long-term operation: Water quality and microorganism. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2024; 361:124849. [PMID: 39214442 DOI: 10.1016/j.envpol.2024.124849] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2024] [Revised: 08/22/2024] [Accepted: 08/27/2024] [Indexed: 09/04/2024]
Abstract
Grass-type architectural waterscapes (GAWs) utilize submerged plants to enhance self-purification ability and maintain a clear-water state. However, knowledge about their long-term water quality and microbial community dynamics remains limited. This study monitored the water quality, microbial community composition, and networks in two GAWs. GAW1 consisted solely Hydrilla verticillata with a water depth of 0.70 m, while GAW2 primarily contained Vallisneria natans, Microsorum pteropus, and Aquarius grisebachii with a water depth of 0.30 m. Results show that both water depth and submerged plant species play crucial roles in GAW establishment. The water depth of 0.7 m enabled Hydrilla verticillata to thrive underwater despite temperature variations, which demonstrated excellent nutrient uptake capacity. Thus, GAW1 exhibited superior self-purification ability, consistently meeting Class III standard for surface water in China. In contrast, GAW2 had a shallow water depth and contained ornamental plants, only meeting Class V standard. Furthermore, microbial communities were shaped by water quality, with distinct enriched genera serving as potential "microbial indicators". Enrichment of the hgcI clade and Sporichthyaceae_unclassified indicated superior water quality in GAW1, while prevalence of Comamonadaceae_unclassified, Flavobacterium, Rhodoluna, and Pseudarcicella suggested poor water quality in GAW2. Additionally, highly complex and connected microbial networks suggested elevated pollutant levels in GAWs. This study emphasized the significance of submerged plant species and water depth in GAWs construction and highlighted microbial communities and networks as potential indicators of water quality.
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Affiliation(s)
- Quan Zhang
- Shenzhen Institute of Building Research Co., Ltd., 518049 Shenzhen, Guangdong, China; School of Civil and Environmental Engineering, Harbin Institute of Technology (Shenzhen), 518055 Shenzhen, Guangdong, China.
| | - Xiang Liu
- Shenzhen Jianyan Testing Co., Ltd., 518031 Shenzhen, Guangdong, China
| | - Shijin Peng
- Shenzhen Institute of Building Research Co., Ltd., 518049 Shenzhen, Guangdong, China
| | - Wenyi Dong
- School of Civil and Environmental Engineering, Harbin Institute of Technology (Shenzhen), 518055 Shenzhen, Guangdong, China
| | - Zeguang Chen
- Shenzhen Institute of Building Research Co., Ltd., 518049 Shenzhen, Guangdong, China
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6
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Li Y, Gao B, Xu D. Influence of anti-seasonal inundation on geochemical processes of arsenic speciation in the water-level-fluctuation zone soil of the Three Gorges Reservoir, China. JOURNAL OF HAZARDOUS MATERIALS 2024; 475:134895. [PMID: 38885587 DOI: 10.1016/j.jhazmat.2024.134895] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Revised: 06/10/2024] [Accepted: 06/11/2024] [Indexed: 06/20/2024]
Abstract
Since the completion of Three Gorges Dam, the water-level-fluctuation zone (WLFZ) of the Three Gorges Reservoir (TGR) experiences the periodic anti-seasonal inundation. However, knowledge for mechanisms of mobilization and transformation of arsenic (As) in WLFZ soils of the TGR remains scarce. To address this gap, a combination of field observation and simulated flooding experiments attempts to illustrate the As mobilization, the transformation between As(V) and As(III), and the factors driving these processes. The study revealed that anti-seasonal inundation (with a temperature at 13 ℃) mitigated As release from submerged soils. Interestingly, the total As and ratio of As(III) (the more toxic form of As) concentrations in porewater at 13 ℃ was lower, and the prevalence of As(III) occurred later than those at 32 °C (imitate the seasonal inundation condition). The results indicated that the As reduction and the corresponding toxic risks in submerged soils were alleviated under anti-seasonal inundation. The study proposes the reduction of As-bearing manganese (Mn) mineral assemblages and competitive adsorption of dissolved organic carbon (DOC) as primary mechanisms for As mobilization. Furthermore, microorganism-mediated detoxification/reduction processes involving DOC, nitrogen, and Mn (oxyhydr)oxides were identified as central pathways for As(III) enrichment under anti-seasonal inundation. This study enhances understandings of the biogeochemical processes and fate of As in WLFZ soils influenced by artificial regulation of the reservoir.
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Affiliation(s)
- Yanyan Li
- State Key Laboratory of Simulation and Regulation of Water Cycle in River Basin, China Institute of Water Resources and Hydropower Research, Beijing 100038, China; Beijing Key Laboratory of Mineral Environmental Function, School of Earth and Space Sciences, Peking University, Beijing 100871, China
| | - Bo Gao
- State Key Laboratory of Simulation and Regulation of Water Cycle in River Basin, China Institute of Water Resources and Hydropower Research, Beijing 100038, China.
| | - Dongyu Xu
- State Key Laboratory of Simulation and Regulation of Water Cycle in River Basin, China Institute of Water Resources and Hydropower Research, Beijing 100038, China
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Guo Y, Gu S, Tanentzap AJ, Wang P, Li Q, Wu K, He P, Liu X, Yu J, Qiu D, Wu J, Zhang Y, Bai G, Lee SMY, Wu Z, Zhou Q. Submerged macrophyte restoration enhanced microbial carbon utilization in shallow lakes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 934:173357. [PMID: 38772483 DOI: 10.1016/j.scitotenv.2024.173357] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2024] [Revised: 05/13/2024] [Accepted: 05/17/2024] [Indexed: 05/23/2024]
Abstract
Submerged macrophytes are integral to the functioning of shallow lakes through their interaction with microorganisms. However, we have a limited understanding of how microbial communities in shallow lakes respond when macrophytes are restored after being historically extirpated. Here, we explored the interactions between prokaryotic communities and carbon utilization in two lakes where submerged macrophytes were restored. We found restoration reduced total carbon in sediment by 8.9 %-27.9 % and total organic carbon by 16.7 %-36.9 % relative to control treatment, but had no effects on carbon content in the overlying water. Sediment microbial communities were more sensitive to restoration than planktonic microbes and showed enhanced utilization of simple carbon substrates, such as Tween 40, after restoration. The increase in carbon utilization was attributed to declines in the relative abundance of some genera, such as Saccharicenans and Desertimonas, which were found weakly associated with the utilization of different carbon substrates. These genera likely competed with microbes with high carbon utilization in restored areas, such as Lubomirskia. Our findings highlight how restoring submerged macrophytes can enhance microbial carbon utilization and provide guidance to improve the carbon sequestration capacity of restored shallow lakes.
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Affiliation(s)
- Yao Guo
- Key laboratory of Lake and Watershed Science for Water Security, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China
| | - Songsong Gu
- Key Laboratory for Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences (CAS), Beijing 10085, China
| | - Andrew J Tanentzap
- Ecosystems and Global Change Group, School of the Environment, Trent University, Peterborough, Ontario K9L 0G2, Canada
| | - Pei Wang
- Key laboratory of Lake and Watershed Science for Water Security, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China
| | - Qianzheng Li
- Key laboratory of Lake and Watershed Science for Water Security, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China
| | - Kaixuan Wu
- Key laboratory of Lake and Watershed Science for Water Security, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China
| | - Peng He
- School of Environmental Studies, China University of Geosciences, Wuhan 430074, China
| | - Xiangfen Liu
- Key laboratory of Lake and Watershed Science for Water Security, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China
| | - Junqi Yu
- Key laboratory of Lake and Watershed Science for Water Security, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China
| | - Dongru Qiu
- Key laboratory of Lake and Watershed Science for Water Security, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China
| | - Junmei Wu
- Key laboratory of Lake and Watershed Science for Water Security, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China
| | - Yi Zhang
- Key laboratory of Lake and Watershed Science for Water Security, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China
| | - Guoliang Bai
- Key laboratory of Lake and Watershed Science for Water Security, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China
| | - Simon Ming-Yuen Lee
- Department of Food Science and Nutrient, The Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong
| | - Zhenbin Wu
- Key laboratory of Lake and Watershed Science for Water Security, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; School of Environmental Studies, China University of Geosciences, Wuhan 430074, China.
| | - Qiaohong Zhou
- Key laboratory of Lake and Watershed Science for Water Security, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China.
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Kang Y, Shen L, Li C, Huang Y, Chen L. Effects of vegetation degradation on soil microbial communities and ecosystem multifunctionality in a karst region, southwest China. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 363:121395. [PMID: 38852407 DOI: 10.1016/j.jenvman.2024.121395] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2024] [Revised: 05/20/2024] [Accepted: 06/04/2024] [Indexed: 06/11/2024]
Abstract
Vegetation degradation caused by intense human disturbances poses a significant challenge to the preservation and improvement of ecosystem functions and services in the karst region of southwest China. Soil microorganisms are major regulators of ecosystem multifunctionality (EMF). Currently, there is a dearth of knowledge regarding the effects of vegetation degradation on soil microbial communities and their corresponding multiple ecosystem functions in karst regions. In this study, we selected the vegetation degradation sequences of second natural forest (NF), agroforestry (AS) and cropland (CL) to investigate the diversity of bacterial, fungal and protistan communities, and their hierarchical co-occurrence network, and EMF to explore the relationships between them. Compared to the NF, the carbon cycling index, nitrogen cycling index, soil water regulation power, and the EMF were significantly decreased by 8.2%-50.6%, 48.7%-86.8%, 19.8%-24.5%, and 31.4%-69.5% in the AS and CL, respectively. The development of EMF can be explained by the fungal, protistan and microbial hierarchical β-diversity, as well as the complexity (e.g. degree) of microbial hierarchical interactions during the process of vegetation degradation. Notably, correlations between the abundances of sensitive amplicon sequence variants (sASVs) for different karst vegetation types and EMF varied in distinct network modules, being positive in module 1 and negative in module 2. Moreover, the relative abundance of keystone taxa in fungal and protistan communities provided greater contributions to EMF than the bacterial communities. Additionally, random forest modeling showed that carbon and nitrogen sources, and soil water content, and trace elements (e.g. exchangeable magnesium, iron, manganese, and zinc) were identified as key driving factors of the EMF. Collectively, our findings demonstrate that vegetation degradation obviously alters soil microbial diversities and hierarchical interactions, emphasizing their key role in maintaining ecosystem functions and health in karst regions.
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Affiliation(s)
- Yalong Kang
- School of Ecology and Environmental Sciences, Yunnan University, Kunming, 650500, China; Ministry of Education Key Laboratory for Transboundary Eco-Security of Southwest, Kuming, China
| | - Linjun Shen
- School of Ecology and Environmental Sciences, Yunnan University, Kunming, 650500, China; Ministry of Education Key Laboratory for Transboundary Eco-Security of Southwest, Kuming, China
| | - Canfeng Li
- Kunming Natural Resources Comprehensive Survey Center of China Geological Survey/Technology Innovation Center for Natural Ecosystem Carbon Sink, Ministry of Natural Resources, 650100: Kunming, China
| | - Yong Huang
- Institute of International Rivers and Eco-Security, Yunnan University, Kunming, 650500, China.
| | - Liding Chen
- School of Ecology and Environmental Sciences, Yunnan University, Kunming, 650500, China; Ministry of Education Key Laboratory for Transboundary Eco-Security of Southwest, Kuming, China
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9
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Zang Z, Li Y, Wang Y, Zhang Y, Deng S, Guo X, Yang K, Zhao W. Contrasting roles of plant, bacterial, and fungal diversity in soil organic carbon accrual during ecosystem restoration: A meta-analysis. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 930:172767. [PMID: 38670358 DOI: 10.1016/j.scitotenv.2024.172767] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2024] [Revised: 04/17/2024] [Accepted: 04/23/2024] [Indexed: 04/28/2024]
Abstract
Plant and microbial diversity plays vital roles in soil organic carbon (SOC) accumulation during ecosystem restoration. However, how soil microbial diversity mediates the positive effects of plant diversity on carbon accumulation during vegetation restoration remains unclear. We conducted a large-scale meta-analysis with 353 paired observations from 65 studies to examine how plant and microbial diversity changed over 0-160 years of natural restoration and its connection to SOC accrual in the topsoil (0-10 cm). Results showed that natural restoration significantly increased plant aboveground biomass (122.09 %), belowground biomass (153.05 %), and richness (21.99 %) and SOC accumulation (32.34 %) but had no significant impact on microbial diversity. Over time, bacterial and fungal richness increased and then decreased. The responses of major microbial phyla, in terms of relative abundance, varied across restoration and ecosystem types. Specifically, Ascomycota and Zygomycota decreased more under farmland abandonment than under grazing exclusion. In forest, Bacteroidetes, Ascomycota, and Zygomycota significantly decreased after natural restoration. The increase in SOC and Basidiomycota was higher in forest than in grassland. Based on standardized estimates, structural equation modeling showed that plant diversity had the highest positive effect (0.55) on SOC accrual, and while fungal diversity (0.15) also had a positive effective, bacterial diversity (-0.20) had a negative effect. Plant diversity promoted SOC accumulation by directly impacting biomass and soil moisture and total nitrogen and indirectly influencing soil microbial richness. This meta-analysis highlights the significant roles of plant diversity and microbial diversity in carbon accumulation during natural restoration and elucidates their relative contributions to carbon accumulation, thereby aiding in more precise predictions of soil carbon sequestration.
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Affiliation(s)
- Zhenfeng Zang
- College of Grassland Agriculture, Northwest A&F University, Yangling, Shaanxi 712100, China; State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Yingxue Li
- College of Grassland Agriculture, Northwest A&F University, Yangling, Shaanxi 712100, China; State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, Shaanxi 712100, China; Comprehensive Security Center of Hohhot Forestry and Grassland Bureau, Hohhot, Inner Mongolia 010010, China
| | - Yinan Wang
- College of Grassland Agriculture, Northwest A&F University, Yangling, Shaanxi 712100, China; State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Yu Zhang
- College of Grassland Agriculture, Northwest A&F University, Yangling, Shaanxi 712100, China; State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Shujuan Deng
- College of Grassland Agriculture, Northwest A&F University, Yangling, Shaanxi 712100, China; State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Xinyu Guo
- College of Grassland Agriculture, Northwest A&F University, Yangling, Shaanxi 712100, China; State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Ke Yang
- Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water Resources, Yangling, Shaanxi 712100, China
| | - Wei Zhao
- College of Grassland Agriculture, Northwest A&F University, Yangling, Shaanxi 712100, China; State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, Shaanxi 712100, China; Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water Resources, Yangling, Shaanxi 712100, China.
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10
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Velasco N, Diaz PJ. Potential model of Scalesia pedunculata carbon sequestration through restoration efforts in agricultural fields of Galapagos. PLoS One 2024; 19:e0302680. [PMID: 38753896 PMCID: PMC11098518 DOI: 10.1371/journal.pone.0302680] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2024] [Accepted: 04/07/2024] [Indexed: 05/18/2024] Open
Abstract
Scalesia pendunculata Hook.f. is the dominant tree in several highlands' areas of the Galapagos Archipelago, yet in inhabited islands the conversion to agricultural fields has reduced its cover. The transition to agroforestry systems including the species shows promising scenarios to restore its cover and to provide ecosystem services such as carbon sequestration. Here, based on field gathered data, we model the potential contribution of S. pedunculata stands in the carbon sequestration of Galapagos. Between 2013-2021, 426 S. pedunculata seedlings were planted in the highlands of Santa Cruz and Floreana islands using several restoration technologies, and their height and survival were monitored every three months. A sub-sample of 276 trees alive since 2020 was used to estimate the DBH based on plant age and height. Based on scientific literature, biomass and carbon content were estimated across time. The final modelling included the density of plants in the restoration sites, estimated DBH, potential survival by restoration treatment, and a Brownian noise to add stochastic events. Overall, survival of S. pedunculata was high in control and slightly increased by most restoration treatments. A stand of 530 trees/ha was projected to sequester ~21 Mg C/ha in 10 years. If this is replicated over all Galapagos coffee production would contribute to the reduction of -1.062% of the Galapagos carbon footprint for the same period. This study adds to compiling benefits of restoring Galapagos flora.
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Affiliation(s)
- Nicolás Velasco
- Charles Darwin Research Station, Charles Darwin Foundation, Santa Cruz, Galapagos, Ecuador
- Departamento de Ciencias Ecológicas, Instituto de Ecología y Biodiversidad, Facultad de Ciencias, Universidad de Chile, Santiago, Chile
| | - Patricia Jaramillo Diaz
- Charles Darwin Research Station, Charles Darwin Foundation, Santa Cruz, Galapagos, Ecuador
- Department of Botany and Plant Physiology, University of Malaga, Malaga, Spain
- IUCN SSC Galapagos Plant Specialist Group, Charles Darwin Research Station, Puerto Ayora, 200102, Ecuador
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11
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Raheem A, Yohanna P, Li G, Noh NJ, Iqbal B, Tang J, Du D, Alahmadi TA, Ansari MJ, Zhan A, Son Y. Unraveling the ecological threads: How invasive alien plants influence soil carbon dynamics. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 356:120556. [PMID: 38537457 DOI: 10.1016/j.jenvman.2024.120556] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2023] [Revised: 03/04/2024] [Accepted: 03/04/2024] [Indexed: 04/07/2024]
Abstract
Invasive alien plants (IAPs) pose significant threats to native ecosystems and biodiversity worldwide. However, the understanding of their precise impact on soil carbon (C) dynamics in invaded ecosystems remains a crucial area of research. This review comprehensively explores the mechanisms through which IAPs influence soil C pools, fluxes, and C budgets, shedding light on their effects and broader consequences. Key mechanisms identified include changes in litter inputs, rates of organic matter decomposition, alterations in soil microbial communities, and shifts in nutrient cycling, all driving the impact of IAPs on soil C dynamics. These mechanisms affect soil C storage, turnover rates, and ecosystem functioning. Moreover, IAPs tend to increase gross primary productivity and net primary productivity leading to the alterations in fluxes and C budgets. The implications of IAP-induced alterations in soil C dynamics are significant and extend to plant-soil interactions, ecosystem structure, and biodiversity. Additionally, they have profound consequences for C sequestration, potentially impacting climate change mitigation. Restoring native plant communities, promoting soil health, and implementing species-specific management are essential measures to significantly mitigate the impacts of IAPs on soil C dynamics. Overall, understanding and mitigating the effects of IAPs on soil C storage, nutrient cycling, and related processes will contribute to the conservation of native biodiversity and complement global C neutrality efforts.
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Affiliation(s)
- Abdulkareem Raheem
- School of Environment and Safety Engineering, Jiangsu University, Zhenjiang, 212013, People's Republic of China
| | - Paul Yohanna
- Department of Environmental Resource Management, Faculty of Earth and Environmental Sciences, Federal University Dustin-ma, Katsina State, Nigeria
| | - Guanlin Li
- School of Environment and Safety Engineering, Jiangsu University, Zhenjiang, 212013, People's Republic of China; Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou, 215009, People's Republic of China.
| | - Nam Jin Noh
- Department of Forest Resources, Kangwon National University, Chuncheon, 24341, Republic of Korea
| | - Babar Iqbal
- School of Environment and Safety Engineering, Jiangsu University, Zhenjiang, 212013, People's Republic of China
| | - Jing Tang
- Key Laboratory of State Forestry Administration on Biodiversity Conservation in Karst Mountainous Areas of Southwestern China, School of Life Sciences, Guizhou Normal University, Guiyang, 550025, People's Republic of China
| | - Daolin Du
- Jingjiang College, Institute of Environment and Ecology, School of Emergency Management, School of Environment and Safety Engineering, School of Agricultural Engineering, Jiangsu University, Zhenjiang, 212013, People's Republic of China
| | - Tahani Awad Alahmadi
- Department of Pediatrics, College of Medicine and King Khalid University Hospital, King Saud University, Medical City, PO Box-2925, Riyadh -11461, Saudi Arabia
| | - Mohammad Javed Ansari
- Department of Botany, Hindu College Moradabad (Mahatma Jyotiba Phule Rohilkhand University Bareilly), India
| | - Aibin Zhan
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, People's Republic of China.
| | - Yowhan Son
- Division of Environmental Science and Ecological Engineering, Korea University, Seoul, 02841, Republic of Korea
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12
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Wang YW, Bai DS, Zhang Y, Luo XG. The role of afforestation with diverse woody species in enhancing and restructuring the soil microenvironment in polymetallic coal gangue dumps. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:29916-29929. [PMID: 38594563 DOI: 10.1007/s11356-024-33164-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Accepted: 03/27/2024] [Indexed: 04/11/2024]
Abstract
To elucidate the effects of long-term (20 years) afforestation with different woody plant species on the soil microenvironment in coal gangue polymetallic contaminated areas. This study analyzed the soil physicochemical properties, soil enzyme activities, soil ionophore, bacterial community structure, soil metabolite, and their interaction relationships at different vertical depths. Urease, sucrase, and acid phosphatase activities in the shallow soil layers increased by 4.70-7.45, 3.83-7.64, and 3.27-4.85 times, respectively, after the restoration by the four arboreal plant species compared to the plant-free control soil. Additionally, it reduced the content of available elements in the soil and alleviated the toxicity stress for Cd, Ni, Co, Cr, As, Fe, Cu, U, and Pb. After the long-term restoration of arboreal plants, the richness and Shannon indices of soil bacteria significantly increased by 4.77-23.81% and 2.93-7.93%, respectively, broadening the bacterial ecological niche. The bacterial community structure shaped by different arboreal plants exhibited high similarity, but the community similarity decreased with increasing vertical depth. Soils Zn, U, Sr, S, P, Mg, K, Fe, Cu, Ca, Ba, and pH were identified as important influencing factors for the community structure of Sphingomonas, Pseudarthrobacter, Nocardioides, and Thiobacillus. The metabolites such as sucrose, raffinose, L-valine, D-fructose 2, 6-bisphosphate, and oxoglutaric acid were found to have the greatest effect on the bacterial community in the rhizosphere soils for arboreal plants. The results of the study demonstrated that long-term planting for woody plants in gangue dumps could regulate microbial abundance and symbiotic patterns through the accumulation of rhizosphere metabolites in the soil, increase soil enzyme activity, reduce heavy metal levels, and improve the soil environment in coal gangue dumps.
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Affiliation(s)
- Yi-Wang Wang
- School of Life Science and Engineering, Southwest University of Science and Technology, Mianyang, 621010, China
- Engineering Research Center of Biomass Materials, Ministry of Education, Southwest University of Science and Technology, Mianyang, 621010, China
| | | | - Yu Zhang
- School of Life Science and Engineering, Southwest University of Science and Technology, Mianyang, 621010, China.
- Engineering Research Center of Biomass Materials, Ministry of Education, Southwest University of Science and Technology, Mianyang, 621010, China.
| | - Xue-Gang Luo
- School of Life Science and Engineering, Southwest University of Science and Technology, Mianyang, 621010, China
- Engineering Research Center of Biomass Materials, Ministry of Education, Southwest University of Science and Technology, Mianyang, 621010, China
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13
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Gutierrez‐Patricio S, Osman JR, Gonzalez‐Pimentel JL, Jurado V, Laiz L, Concepción AL, Saiz‐Jimenez C, Miller AZ. Microbiological exploration of the Cueva del Viento lava tube system in Tenerife, Canary Islands. ENVIRONMENTAL MICROBIOLOGY REPORTS 2024; 16:e13245. [PMID: 38643985 PMCID: PMC11033209 DOI: 10.1111/1758-2229.13245] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2023] [Accepted: 03/15/2024] [Indexed: 04/23/2024]
Abstract
Cueva del Viento, located in the Canary Islands, Spain, is the Earth's sixth-longest lava tube, spanning 18,500 m, and was formed approximately 27,000 years ago. This complex volcanic cave system is characterized by a unique geomorphology, featuring an intricate network of galleries. Despite its geological significance, the geomicrobiology of Cueva del Viento remains largely unexplored. This study employed a combination of culture-dependent techniques and metabarcoding data analysis to gain a comprehensive understanding of the cave's microbial diversity. The 16S rRNA gene metabarcoding approach revealed that the coloured microbial mats (yellow, red and white) coating the cave walls are dominated by the phyla Actinomycetota, Pseudomonadota and Acidobacteriota. Of particular interest is the high relative abundance of the genus Crossiella, which is involved in urease-mediated biomineralization processes, along with the presence of genera associated with nitrogen cycling, such as Nitrospira. Culture-dependent techniques provided insights into the morphological characteristics of the isolated species and their potential metabolic activities, particularly for the strains Streptomyces spp., Paenarthrobacter sp. and Pseudomonas spp. Our findings underscore the potential of Cueva del Viento as an ideal environment for studying microbial diversity and for the isolation and characterization of novel bacterial species of biotechnological interest.
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Affiliation(s)
| | - Jorge R. Osman
- Instituto de Geología Económica Aplicada (GEA)Universidad de ConcepciónConcepciónChile
| | - José Luis Gonzalez‐Pimentel
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS‐CSIC)SevillaSpain
- Laboratorio HERCULESUniversidade de ÉvoraÉvoraPortugal
| | - Valme Jurado
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS‐CSIC)SevillaSpain
| | - Leonila Laiz
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS‐CSIC)SevillaSpain
| | | | - Cesareo Saiz‐Jimenez
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS‐CSIC)SevillaSpain
| | - Ana Zélia Miller
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS‐CSIC)SevillaSpain
- Laboratorio HERCULESUniversidade de ÉvoraÉvoraPortugal
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14
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Wang Z, Li W, Wang Y, Wang X, Ma T, Liu Y, Wei Y. Microbiological impact of long-term wine grape cultivation on soil organic carbon in desert ecosystems: a study on rhizosphere and bulk sandy soils. FRONTIERS IN PLANT SCIENCE 2024; 15:1362149. [PMID: 38516660 PMCID: PMC10955057 DOI: 10.3389/fpls.2024.1362149] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Accepted: 02/22/2024] [Indexed: 03/23/2024]
Abstract
The improvement of nutrients in soil is essential for using deserts and decertified ecosystems and promoting sustainable agriculture. Grapevines are suitable crops for desert soils as they can adapt to harsh environments and effectively impact soil nutrients; however, the mechanisms underlying this remain unclear. This study explored the impact of the different duration(3, 6, and 10 years) of grape cultivation on soil organic carbon, physicochemical properties, enzyme activities, microbial communities, and carbon cycle pathways in both rhizosphere and bulk soils. Partial least squares path modeling was used to further reveal how these factors contributed to soil nutrient improvement. Our findings indicate that after long-term grape cultivation six years, soil organic carbon, total nitrogen, total phosphorus, microbial biomass carbon and nitrogen, and enzyme activities has significantly increased in both rhizosphere and bulk soils but microbial diversity decreased in bulk soil. According to the microbial community assembly analysis, we found that stochastic processes, particularly homogenizing dispersal, were dominant in both soils. Bacteria are more sensitive to environmental changes than fungi. In the bulk soil, long-term grape cultivation leads to a reduction in ecological niches and an increase in salinity, resulting in a decrease in soil microbial diversity. Soil enzymes play an important role in increasing soil organic matter in bulk soil by decomposing plant litters, while fungi play an important role in increasing soil organic matter in the rhizosphere, possibly by decomposing fine roots and producing mycelia. Our findings enhance understanding of the mechanisms of soil organic carbon improvement under long-term grape cultivation and suggest that grapes are suitable crops for restoring desert ecosystems.
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Affiliation(s)
- Zhiheng Wang
- College of Biological Science & Engineering, North Minzu University, Yinchuan, Ningxia, China
| | - Wenchao Li
- Administrative Committee of Wine Industry Zone of Ningxia Helan Mountains’ East Foothill, Yinchuan, Ningxia, China
- College of Enology, Northwest A&F University, Yangling, Shaanxi, China
| | - Yuejuan Wang
- College of Biological Science & Engineering, North Minzu University, Yinchuan, Ningxia, China
| | - Xuefei Wang
- College of Biological Science & Engineering, North Minzu University, Yinchuan, Ningxia, China
| | - Tingting Ma
- College of Biological Science & Engineering, North Minzu University, Yinchuan, Ningxia, China
| | - Yanlin Liu
- College of Enology, Northwest A&F University, Yangling, Shaanxi, China
| | - Yuqing Wei
- College of Biological Science & Engineering, North Minzu University, Yinchuan, Ningxia, China
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15
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Zeng K, Huang X, Dai C, He C, Chen H, Guo J, Xin G. Bacterial community regulation of soil organic matter molecular structure in heavy metal-rich mangrove sediments. JOURNAL OF HAZARDOUS MATERIALS 2024; 465:133086. [PMID: 38035526 DOI: 10.1016/j.jhazmat.2023.133086] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2023] [Revised: 10/30/2023] [Accepted: 11/22/2023] [Indexed: 12/02/2023]
Abstract
Heavy metals (HMs) profoundly impact soil carbon storage potential primarily through soil carbon structure. The association between HM content and soil carbon structure in mangrove sediments remains unclear, likely due to the involvement of microorganisms. In this study, surface sediments in the Futian National Mangrove Nature Reserve were sampled to investigate the chemical structure of soil organic carbon (SOC), the molecular composition of dissolved organic matter (DOM), and potential interactions with microorganisms. HMs, except for Ni, were positively correlated with soil carbon. HMs significantly reduced the alkyl C/O-alkyl C ratio, aromaticity index, and aromatic C values, but increased the labile carboxy/amide C and carbonyl C ratio in SOC. HMs also increased DOM stability, as reflected by the reduced abundance of labile DOM (lipids and proteins) and increased proportion of stable DOM (tannins and condensed aromatics). Bacteria increased the decomposition of labile DOM components (unsaturated hydrocarbons) and the accumulation of stable DOM components (lignins) under HM enrichment. In addition, the association between the bacterial groups and DOM molecules was more robust than that with fungal groups, indicating bacteria had a more significant impact on DOM molecular composition. These findings help in understanding the molecular mechanisms of soil carbon storage in HM-rich mangroves.
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Affiliation(s)
- Kai Zeng
- State Key Lab of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources, School of Agriculture, Shenzhen Campus of Sun Yat-sen University, Shenzhen 518107, China
| | - Xiaochen Huang
- State Key Lab of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources, School of Agriculture, Shenzhen Campus of Sun Yat-sen University, Shenzhen 518107, China.
| | - Chuanshun Dai
- State Key Lab of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources, School of Agriculture, Shenzhen Campus of Sun Yat-sen University, Shenzhen 518107, China
| | - Chuntao He
- State Key Lab of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources, School of Agriculture, Shenzhen Campus of Sun Yat-sen University, Shenzhen 518107, China
| | - Hao Chen
- State Key Lab of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources, School of Agriculture, Shenzhen Campus of Sun Yat-sen University, Shenzhen 518107, China
| | - Junjie Guo
- State Key Lab of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources, School of Agriculture, Shenzhen Campus of Sun Yat-sen University, Shenzhen 518107, China
| | - Guorong Xin
- State Key Lab of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources, School of Agriculture, Shenzhen Campus of Sun Yat-sen University, Shenzhen 518107, China.
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16
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Liu Z, Nan Z, Lin S, Meng W, Xie L, Yu H, Zhang Z, Wan S. Peanut-based intercropping systems altered soil bacterial communities, potential functions, and crop yield. PeerJ 2024; 12:e16907. [PMID: 38344295 PMCID: PMC10858685 DOI: 10.7717/peerj.16907] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2023] [Accepted: 01/17/2024] [Indexed: 02/15/2024] Open
Abstract
Intercropping is an efficient land use and sustainable agricultural practice widely adopted worldwide. However, how intercropping influences the structure and function of soil bacterial communities is not fully understood. Here, the effects of five cropping systems (sole sorghum, sole millet, sole peanut, sorghum/peanut intercropping, and millet/peanut intercropping) on soil bacterial community structure and function were investigated using Illumina MiSeq sequencing. The results showed that integrating peanut into intercropping systems increased soil available nitrogen (AN) and total nitrogen (TN) content. The alpha diversity index, including Shannon and Chao1 indices, did not differ between the five cropping systems. Non-metric multidimensional scaling (NMDS) and analysis of similarities (ANOSIM) illustrated a distinct separation in soil microbial communities among five cropping systems. Bacterial phyla, including Actinobacteria, Proteobacteria, Acidobacteria, and Chloroflexi, were dominant across all cropping systems. Sorghum/peanut intercropping enhanced the relative abundance of phyla Actinobacteriota and Chloroflexi compared to the corresponding monocultures. Millet/peanut intercropping increased the relative abundance of Proteobacteria, Acidobacteriota, and Nitrospirota. The redundancy analysis (RDA) indicated that bacterial community structures were primarily shaped by soil organic carbon (SOC). The land equivalent ratio (LER) values for the two intercropping systems were all greater than one. Partial least squares path modeling analysis (PLS-PM) showed that soil bacterial community had a direct effect on yield and indirectly affected yield by altering soil properties. Our findings demonstrated that different intercropping systems formed different bacterial community structures despite sharing the same climate, reflecting changes in soil ecosystems caused by interspecific interactions. These results will provide a theoretical basis for understanding the microbial communities of peanut-based intercropping and guide agricultural practice.
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Affiliation(s)
- Zhu Liu
- Shandong Academy of Agricultural Sciences, Ji’nan, China
- College of Agronomy, Shenyang Agricultural University, Shenyang, China
| | - Zhenwu Nan
- Shandong Academy of Agricultural Sciences, Ji’nan, China
| | - Songming Lin
- Shandong Academy of Agricultural Sciences, Ji’nan, China
- Qilu Normal University, Ji’nan, China
| | - Weiwei Meng
- Shandong Academy of Agricultural Sciences, Ji’nan, China
| | - Liyong Xie
- College of Agronomy, Shenyang Agricultural University, Shenyang, China
| | - Haiqiu Yu
- College of Agronomy, Shenyang Agricultural University, Shenyang, China
| | - Zheng Zhang
- Shandong Academy of Agricultural Sciences, Ji’nan, China
| | - Shubo Wan
- Shandong Academy of Agricultural Sciences, Ji’nan, China
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17
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Kang W, Xiao Y, Li W, Cheng A, Cheng C, Jia Z, Yu L. Paddy cultivation in degraded karst wetland soil can significantly improve the physiological and ecological functions of carbon-fixing resident microorganisms. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 909:168187. [PMID: 37972785 DOI: 10.1016/j.scitotenv.2023.168187] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2023] [Revised: 10/10/2023] [Accepted: 10/27/2023] [Indexed: 11/19/2023]
Abstract
Microorganisms play an important role in carbon fixation in karst wetland soils. However, the carbon fixation capacity of karst wetland soils and active microorganisms involved in the carbon fixation process are poorly understood. In this study, carbon fixation capacity and active microorganisms involved in the fixation of inorganic carbon into organic carbon were studied in native, naturally degraded, and reclaimed karst wetland soils by the combination of stable isotope probing (SIP) and high-throughput sequencing. Under light conditions, the soil carbon fixation capacity ranked: the reclaimed wetland soil (1.58 mg C kg-1 day-1) > native wetland soil (1.43 mg C kg-1 day-1) > degraded wetland soil (0.62 mg C kg-1 day-1). In the dark, the soils ranked: the native wetland soil (0.24 mg C kg-1 day-1) > reclaimed wetland soil (0.18 mg C kg-1 day-1) > degraded wetland soil (0.06 mg C kg-1 day-1). Active microorganisms fixing inorganic carbon in the karst wetland soils were mainly Sulfurovum, Thermovirga, Dethiosulfatibacter, Allochromatium, Methylorubrum, and Bradyrhizobium. Thus, paddy cultivation can restore the carbon fixation capacity of microorganisms in the degraded karst wetland soil. This study provides an experimental basis for improving soil carbon fixation capacity and repairing degraded soil in karst wetlands.
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Affiliation(s)
- Weihua Kang
- Institute of Resource Biology and Biotechnology, Department of Biotechnology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Yutian Xiao
- Institute of Resource Biology and Biotechnology, Department of Biotechnology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Wei Li
- Institute of Resource Biology and Biotechnology, Department of Biotechnology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China; Key Laboratory of Molecular Biophysics, Ministry of Education, Wuhan 430074, China.
| | - Aoqi Cheng
- Institute of Resource Biology and Biotechnology, Department of Biotechnology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Congyu Cheng
- Institute of Resource Biology and Biotechnology, Department of Biotechnology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Zhongjun Jia
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Longjiang Yu
- Institute of Resource Biology and Biotechnology, Department of Biotechnology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China; Key Laboratory of Molecular Biophysics, Ministry of Education, Wuhan 430074, China
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18
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Kang Y, Wu H, Guan Q, Zhang Z. Responses of soil greenhouse gas emissions to soil mesofauna invasions and its driving mechanisms in the alpine tundra: A microcosm study. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 908:168255. [PMID: 37935268 DOI: 10.1016/j.scitotenv.2023.168255] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2023] [Revised: 10/25/2023] [Accepted: 10/29/2023] [Indexed: 11/09/2023]
Abstract
Climate change is resulting in significant modifications of the altitudinal patterns of soil fauna in mountains, leading to their upward invasion and alteration of soil ecological processes. However, the effects of soil greenhouse gas (GHG) emissions from soil mesofauna invasion and their driving mechanisms have not been clearly understood. To address this knowledge gap, we simulated a soil mesofauna invasion from an Erman's birch forest (EB) to the alpine tundra (AT) of the Changbai Mountain in Northeast China. Four treatments were established: no soil mesofauna (S0), native species (SN), invasive species (SI), and invasive species superposed native species (SS). We conducted a 79-day microcosm experiment, utilizing gas chromatography and high-throughput sequencing, to explore the variations in soil greenhouse gas emissions and their driving factors. Results showed that the cumulative CO2 emissions under SN, SI, and SS, compared with S0, increased by 34.13 %, 73.93 %, and 107.64 % and cumulative N2O emissions increased by 59.05 %, 101.18 %, and 183.88 %, respectively. Compared to SN, the cumulative emissions of CO2 and N2O increased by 29.89 % and 26.31 % under SI and by 54.91 % and 78.59 % under SS, respectively. The impacts of invasive species and native species on greenhouse gases were not a simple additive effect. Abiotic (soil variables) and biotic (soil mesofauna and microbial diversity) factors explained 37.76 % and 44.41 % of the total variations in CO2 and N2O emissions, respectively, in which NH4+-N and C: N ratios contributed the largest variations. The contribution of soil mesofauna diversity to the variations in CO2 and N2O emissions was higher than that of microbial diversity. The bacterial network graph density was correlated with soil CO2 and N2O emissions. Our findings highlight that soil mesofauna invasions increased GHG emissions, and these variations were predominantly explained by biotic rather than abiotic factors.
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Affiliation(s)
- Yujuan Kang
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, 4888 Shengbei Street, Changchun 130012, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Haitao Wu
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, 4888 Shengbei Street, Changchun 130012, China; Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China.
| | - Qiang Guan
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, 4888 Shengbei Street, Changchun 130012, China; Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
| | - Zhongsheng Zhang
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, 4888 Shengbei Street, Changchun 130012, China; Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
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Liu J, Xu Y, Si YJ, Li BQ, Chen P, Wu LL, Guo P, Ji RQ. The Diverse Mycorrizal Morphology of Rhododendron dauricum, the Fungal Communities Structure and Dynamics from the Mycorrhizosphere. J Fungi (Basel) 2024; 10:65. [PMID: 38248974 PMCID: PMC10817234 DOI: 10.3390/jof10010065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2023] [Revised: 01/10/2024] [Accepted: 01/11/2024] [Indexed: 01/23/2024] Open
Abstract
It is generally believed that mycorrhiza is a microecosystem composed of mycorrhizal fungi, host plants and other microscopic organisms. The mycorrhiza of Rhododendron dauricum is more complex and the diverse morphology of our investigated results displays both typical ericoid mycorrhizal characteristics and ectomycorrhizal traits. The characteristics of ectendoomycorrhiza, where mycelial invade from the outside into the root cells, have also been observed. In order to further clarify the mycorrhizal fungi members and other fungal communities of R. dauricum mycorrhiza, and explore the effects of vegetation and soil biological factors on their community structure, we selected two woodlands in the northeast of China as samples-one is a mixed forest of R. dauricum and Quercus mongolica, and the other a mixed forest of R. dauricum, Q. mongolica, and Pinus densiflor. The sampling time was during the local growing season, from June to September. High-throughput sequencing yielded a total of 3020 fungal amplicon sequence variants (ASVs), which were based on sequencing of the internal transcribed spacer ribosomal RNA (ITS rRNA) via the Illumina NovaSeq platform. In the different habitats of R. dauricum, there are differences in the diversity of fungi obtained from mycorrhizal niches, and specifically the mycorrhizal fungal community structure in the complex vegetation of mixed forests, where R. dauricum is found, exhibits greater stability, with relatively minor changes over time. Soil fungi are identified as the primary source of fungi within the mycorrhizal niche, and the abundance of mycorrhizal fungi from mycorrhizal niches in R. dauricum is significantly influenced by soil pH, organic matter, and available nitrogen. The relationship between soil fungi and mycorrhizal fungi from mycorrhizal niches is simultaneously found to be intricate, while the genus Hydnellum emerges as a central genus among mycorrhizal fungi from mycorrhizal niches. However, there is currently a substantial gap in the foundational research of this genus, including the fact that mycorrhizal fungi from mycorrhizal niches have, compared to fungi present in the soil, proven to be more sensitive to changes in soil moisture.
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Affiliation(s)
| | | | | | | | | | | | | | - Rui-Qing Ji
- Engineering Research Center of Edible and Medicinal Fungi, Ministry of Education, Jilin Agricultural University, Changchun 130118, China; (J.L.); (Y.X.); (Y.-J.S.); (B.-Q.L.); (P.C.); (L.-L.W.); (P.G.)
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20
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Guo Q, Gong L. Compared with pure forest, mixed forest alters microbial diversity and increases the complexity of interdomain networks in arid areas. Microbiol Spectr 2024; 12:e0264223. [PMID: 38095470 PMCID: PMC10783054 DOI: 10.1128/spectrum.02642-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Accepted: 11/22/2023] [Indexed: 01/13/2024] Open
Abstract
IMPORTANCE The results provide a comparative study of the response of soil microbial ecology to the afforestation of different tree species and deepen the understanding of the factors controlling soil microbial community structure.
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Affiliation(s)
- Qian Guo
- College of Ecology and Environment, Xinjiang University, Urumqi, China
- Key Laboratory of Oasis Ecology, Ministry of Education, Urumqi, China
- Xinjiang Jinghe Observation and Research Station of Temperate Desert Ecosystem, Ministry of Education, Jinghe, China
| | - Lu Gong
- College of Ecology and Environment, Xinjiang University, Urumqi, China
- Key Laboratory of Oasis Ecology, Ministry of Education, Urumqi, China
- Xinjiang Jinghe Observation and Research Station of Temperate Desert Ecosystem, Ministry of Education, Jinghe, China
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21
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Hao C, Du P, Ren J, Hu L, Zhang Z. Halophyte Elymus dahuricus colonization regulates microbial community succession by mediating saline-alkaline and biogenic organic matter in bauxite residue. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 905:167140. [PMID: 37722424 DOI: 10.1016/j.scitotenv.2023.167140] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2023] [Revised: 09/13/2023] [Accepted: 09/14/2023] [Indexed: 09/20/2023]
Abstract
Alkalinity regulation and nutrient accumulation are critical factors in the construction of plant and microbial communities and soil formation in bauxite residue, and are extremely important for sustainable vegetation restoration in bauxite residue disposal areas. However, the establishment and succession of microbial communities driven by plant colonization-mediated improvements in the physicochemical properties of bauxite residues remain poorly understood. Thus, in this study, we determined the saline-alkali properties and dissolved organic matter (DOM) components under plant growth conditions and explored the microbial community diversity and structure using Illumina high-throughput sequencing. The planting of Elymus dahuricus (E. dahuricus) in the bauxite residue resulted in a significant decrease in total alkalinity (TA), exchangeable Na, and electrical conductivity (EC) as well as the release of more tryptophan-like protein compounds and low-molecular-weight humic substances associated with biological activities into the bauxite residue substrate. Taxonomical analysis revealed an initial-stage bacterial and fungal community dominated by alkaline-tolerant Actinobacteriota, Firmicutes, and Ascomycota, and an increase in the relative abundances of the phyla Bacteroidota, Cyanobacteria, Chloroflexi, and Gemmatimonadota. The biological activities of phylum Actinobacteriota, Bacteroidota, and Gemmatimonadota were significantly associated with protein-like and UVA-like humic substances. As eutrophic bacteria, Proteobacteria participate in the transformation of humic substances and can not only utilize small molecules of organic matter and convert them into humic substances but also promote the gradual conversion of humic acids into simple molecular compounds. Our results suggest that plant roots secrete organic matter and microbial metabolites as the main biogenic organic matter that participates in the establishment and succession of the microbial community in bauxite residues. Root length affects bacterial and fungal diversity by mediating the production of protein-like substances.
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Affiliation(s)
- Chongkai Hao
- Inner Mongolia Key Laboratory of Environmental Pollution Control and Waste Resource Recycle, School of Ecology and Environment, Inner Mongolia University, Hohhot 010021, China
| | - Ping Du
- Technical Centre for Soil, Agricultural and Rural Ecology and Environment, Ministry of Ecology and Environment, Beijing 100012, China
| | - Jie Ren
- Inner Mongolia Key Laboratory of Environmental Pollution Control and Waste Resource Recycle, School of Ecology and Environment, Inner Mongolia University, Hohhot 010021, China.
| | - Lijuan Hu
- Inner Mongolia Key Laboratory of Environmental Pollution Control and Waste Resource Recycle, School of Ecology and Environment, Inner Mongolia University, Hohhot 010021, China
| | - Zongpeng Zhang
- Inner Mongolia Key Laboratory of Environmental Pollution Control and Waste Resource Recycle, School of Ecology and Environment, Inner Mongolia University, Hohhot 010021, China
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22
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Yao H, Li Z, Geisen S, Qiao Z, Breed MF, Sun X. Degree of urbanization and vegetation type shape soil biodiversity in city parks. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 899:166437. [PMID: 37604369 DOI: 10.1016/j.scitotenv.2023.166437] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2023] [Revised: 07/28/2023] [Accepted: 08/18/2023] [Indexed: 08/23/2023]
Abstract
Urbanization negatively impacts aboveground biodiversity, such as bird and insect communities. City parks can reduce these negative impacts by providing important habitat. However, it remains poorly understood how the degree of urbanization and vegetation types within city parks (e.g., lawns, woodland) impact soil biodiversity. Here we investigated the impact of the degree of urbanization (urban vs. suburban) and vegetation type (lawn, shrub-lawn, tree-lawn and tree-shrub mixtures) on soil biodiversity in parkland systems. We used eDNA metabarcoding to characterize soil biodiversity of bacteria, fungi, protists, nematodes, meso- and macrofauna across park vegetation types in urban and suburban regions in Xiamen, China. We observed a strong effect of the degree of urbanization on the richness of different soil biota groups, with higher species richness of protists and meso/macrofauna in urban compared to suburban areas, while the richness of bacteria and fungi did not differ, and the difference of nematode richness depended on vegetation type. At the functional level, increased degree of urbanization associated with greater species richness of bacterivores, plant pathogens and animal parasites. These urbanization effects were at least partly modulated by higher soil phosphorous levels in urban compared to suburban sites. Also, the vegetation type impacted soil biodiversity, particularly fungal richness, with the richness of pathogenic and saprotrophic fungi increasing from lawn to tree-shrub mixtures. Tree-shrub mixtures also had the highest connectedness between biotas and lowest variation in the soil community structure. Overall, we show that soil biodiversity is strongly linked to the degree of urbanization, with overall richness increasing with urbanization, especially in bacterivores, plant pathogens and animal parasites. Targeted management of vegetation types in urban areas should provide a useful way to help mitigate the negative effect of urbanization on soil biodiversity.
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Affiliation(s)
- Haifeng Yao
- Key Laboratory of Urban Environment and Health, Ningbo Observation and Research Station, Fujian Key Laboratory of Watershed Ecology, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China; University of Chinese Academy of Sciences, Beijing 100049, China; Zhejiang Key Laboratory of Urban Environmental Processes and Pollution Control, CAS Haixi Industrial Technology Innovation Center in Beilun, Ningbo 315830, China; Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China.
| | - Zhipeng Li
- Key Laboratory of Urban Environment and Health, Ningbo Observation and Research Station, Fujian Key Laboratory of Watershed Ecology, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China; Zhejiang Key Laboratory of Urban Environmental Processes and Pollution Control, CAS Haixi Industrial Technology Innovation Center in Beilun, Ningbo 315830, China.
| | - Stefan Geisen
- Laboratory of Nematology, Department of Plant Sciences, Wageningen University & Research, 6700 ES Wageningen, the Netherlands.
| | - Zhihong Qiao
- University of Chinese Academy of Sciences, Beijing 100049, China; Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China.
| | - Martin F Breed
- College of Science and Engineering, Flinders University, Bedford Park, SA 5042, Australia.
| | - Xin Sun
- Key Laboratory of Urban Environment and Health, Ningbo Observation and Research Station, Fujian Key Laboratory of Watershed Ecology, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China; Zhejiang Key Laboratory of Urban Environmental Processes and Pollution Control, CAS Haixi Industrial Technology Innovation Center in Beilun, Ningbo 315830, China.
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23
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Tang Y, Li G, Iqbal B, Tariq M, Rehman A, Khan I, Du D. Soil nutrient levels regulate the effect of soil microplastic contamination on microbial element metabolism and carbon use efficiency. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2023; 267:115640. [PMID: 37922780 DOI: 10.1016/j.ecoenv.2023.115640] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2023] [Revised: 10/11/2023] [Accepted: 10/26/2023] [Indexed: 11/07/2023]
Abstract
Microplastics (MPs) are emerging environmental contaminants in soil ecosystems that disrupt the soil carbon (C) pool. Therefore, the response of microbial metabolism to MP-contaminated soil is crucial for soil-C stabilization. We undertook factorial experiments in a greenhouse with three types of soil microplastics with three levels of soil nutrients and undertook soil physiochemical analyses after 60 days. The present study revealed how the presence of degradable polylactic acid (PLA) and non-degradable polyethylene (PE) MPs affects soil microbial nutrient limitation and C use efficiency (CUE) at varying nutrient concentrations. The presence of PLA in soil with low nutrient levels led to a significant increase (29%) in the activities of nitrogen (N)-acquiring enzymes. In contrast, the presence of MPs had no effect on C- and N-acquiring enzymes. The occurrence of PE caused a 41% reduction in microbial C limitation in high-nutrient soils, and microbial nutrient metabolism was limited by the occurrence of MPs in soils amended with nutrients. A strong positive correlation between microbial C and nutrient limitation in the soil indicates that addressing C limitation followed by amendment of soil with MPs could potentially intensify microbial N limitation in soils with varying nutrients. In comparison, the microbial CUE increased by 10% with the application of degradable MPs (PLA) to soils with a low nutrient status. These findings highlight the significant influence of both degradable PLA and non-degradable PE MPs on soil microbial processes and C dynamics. In conclusion, PLA enhances metabolic efficiency in nutrient-rich soils, potentially aiding C utilization, whereas PE reduces microbial C limitation, offering promise for soil C sequestration strategies. Our findings underscore the importance of considering MPs in soil ecosystem studies and in broader sustainability efforts.
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Affiliation(s)
- Yi Tang
- School of Emergency Management, Institute of Environmental Health and Ecological Security, School of Environment and Safety Engineering, Jiangsu Province Engineering Research Center of Green Technology and Contingency Management for Emerging Pollutants, Jiangsu University, Zhenjiang 212013, People's Republic of China
| | - Guanlin Li
- School of Emergency Management, Institute of Environmental Health and Ecological Security, School of Environment and Safety Engineering, Jiangsu Province Engineering Research Center of Green Technology and Contingency Management for Emerging Pollutants, Jiangsu University, Zhenjiang 212013, People's Republic of China; Department of Environmental Science and Ecological Engineering, Korea University, Seoul 02841, Republic of Korea; Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou 215009, People's Republic of China.
| | - Babar Iqbal
- School of Emergency Management, Institute of Environmental Health and Ecological Security, School of Environment and Safety Engineering, Jiangsu Province Engineering Research Center of Green Technology and Contingency Management for Emerging Pollutants, Jiangsu University, Zhenjiang 212013, People's Republic of China; Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou 215009, People's Republic of China
| | - Muhammad Tariq
- School of Emergency Management, Institute of Environmental Health and Ecological Security, School of Environment and Safety Engineering, Jiangsu Province Engineering Research Center of Green Technology and Contingency Management for Emerging Pollutants, Jiangsu University, Zhenjiang 212013, People's Republic of China
| | - Abdul Rehman
- Department of Agronomy, Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, 63100 Bahawalpur, Pakistan
| | - Ismail Khan
- School of Emergency Management, Institute of Environmental Health and Ecological Security, School of Environment and Safety Engineering, Jiangsu Province Engineering Research Center of Green Technology and Contingency Management for Emerging Pollutants, Jiangsu University, Zhenjiang 212013, People's Republic of China; Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou 215009, People's Republic of China.
| | - Daolin Du
- School of Emergency Management, Institute of Environmental Health and Ecological Security, School of Environment and Safety Engineering, Jiangsu Province Engineering Research Center of Green Technology and Contingency Management for Emerging Pollutants, Jiangsu University, Zhenjiang 212013, People's Republic of China
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24
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Wu SH, Luo MX, Chang JT, Chen Y, Liao PC. Unravelling the dynamics of soil microbial communities under the environmental selection and range shift process in afforestation ecosystems. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 898:165476. [PMID: 37454863 DOI: 10.1016/j.scitotenv.2023.165476] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Revised: 06/30/2023] [Accepted: 07/09/2023] [Indexed: 07/18/2023]
Abstract
The process of forest range shift not only affects the vegetation aboveground but also influences the dynamics of belowground microbial communities. To investigate the changes in soil under forest range shift, we examined the natural forest soil microbiome along with its corresponding physicochemical properties, as well as the afforestation of natural forest by seedlings and sowing. By utilizing natural forests and employing different afforestation methods, we simulated the three stages of forest range shift: the staging stage, regeneration, and colonization. We employed network analysis and phylogenetic assemblages to examine the structure of soil microbial communities during these three stages in a macro-environmental change context. Ordination and regression analyses were also used to explore the correlation between microorganisms, environmental factors, and changes in their niches. The findings revealed that different afforestation (range shift) types led to distinct microbial compositions. Seedling afforestation exhibited similarities to mature forests, suggesting a significant influence on below-ground microorganisms. In contrast, sowing-based afforestation resulted in small changes in soil microbes, indicating a legacy effect on grassland soils. The impact of the rhizosphere on microbial composition remained consistent across the three forest types. Overall, this study underscores the significance of forest range shift in shaping soil microbial communities and emphasizes the need to consider these dynamics in forest management and restoration endeavours.
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Affiliation(s)
- Shu-Hong Wu
- School of Ecology and Nature Conservation, Beijing Forestry University, No. 35 Tsinghua East Road, Haidian District, Beijing 100083, China.
| | - Min-Xin Luo
- School of Life Science, National Taiwan Normal University, No. 88 Ting-Chow Rd., Sec. 4, Taipei 116, Taiwan.
| | - Jui-Tse Chang
- School of Life Science, National Taiwan Normal University, No. 88 Ting-Chow Rd., Sec. 4, Taipei 116, Taiwan.
| | - Ye Chen
- School of Grassland, Beijing Forestry University, No. 35 Tsinghua East Road, Haidian District, Beijing 100083, China
| | - Pei-Chun Liao
- School of Life Science, National Taiwan Normal University, No. 88 Ting-Chow Rd., Sec. 4, Taipei 116, Taiwan.
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25
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Liu J, Li C, Ma W, Wu Z, Liu W, Wu W. Exploitation alters microbial community and its co-occurrence patterns in ionic rare earth mining sites. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 898:165532. [PMID: 37454857 DOI: 10.1016/j.scitotenv.2023.165532] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2023] [Revised: 06/29/2023] [Accepted: 07/12/2023] [Indexed: 07/18/2023]
Abstract
The exploitation of ion-adsorption rare earth elements (REEs) deposits results in serious ecological and environmental problems, which has attracted much attention. However, the influences of exploitation on the prokaryotic communities and their complex interactions remain poorly understood. In the present study, bacterial and archaeal communities, as well as ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA), in and around REEs mining area were investigated through high throughput sequencing and quantitative polymerase chain reaction (qPCR). Our results indicated that mining soil was characterized by poor soil structure, nutrient deficiency, and high concentrations of residual REEs. Oligotrophic bacteria (e.g., Chloroflexi and Acidobacteriota) were dominant in unexploited soil and mining soil, while copiotrophic bacteria (Proteobacteria and Actinobacteriota) were more abundant in surrounding soil. Nutrient was the key factor affecting microbial variation and abundance in mining soil. The bacterial community was more sensitive to REEs, while the archaeal communities were relatively stable. As the key members for ammonia oxidation, AOA outnumbered AOB in all the soil types, and the former was significantly influenced by pH, nutrients, and TREEs in mining soil. The microbial co-occurrence network analysis demonstrated that exploitation significantly influenced topological properties, decreased the complexity, and resulted in a much unstable network, leading to a more fragile microbial ecosystem in mining areas. Notably, the abundance of keystone taxa decreased after exploitation, and oligotrophic groups (Chloroflexi) replaced copiotrophic groups (Proteobacteria and Actinobacteriota) as the key to rebuilt a co-occurrence network, suggesting potentially important roles in maintaining network stability. The current results are of great significance to the ecological risk assessment of REEs exploitation.
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Affiliation(s)
- Jingjing Liu
- School of Energy and Machinery Engineering, Jiangxi University of Science and Technology, Nanchang 330013, China; Jiangxi Key Laboratory of Mining & Metallurgy Environmental Pollution Control, Ganzhou 341099, China.
| | - Chun Li
- School of Energy and Machinery Engineering, Jiangxi University of Science and Technology, Nanchang 330013, China
| | - Wendan Ma
- School of Energy and Machinery Engineering, Jiangxi University of Science and Technology, Nanchang 330013, China
| | - Zengxue Wu
- School of Energy and Machinery Engineering, Jiangxi University of Science and Technology, Nanchang 330013, China
| | - Wei Liu
- College of Chemistry and Environmental Science, Hebei University, Baoding 071002, China
| | - Weixiang Wu
- Institute of Environmental Science and Technology, Zhejiang University, Hangzhou 310030, China
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26
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Hu T, Xiong K, Yu Y, Wang J, Wu Y. Ecological stoichiometry and homeostasis characteristics of plant-litter-soil system with vegetation restoration of the karst desertification control. FRONTIERS IN PLANT SCIENCE 2023; 14:1224691. [PMID: 37868323 PMCID: PMC10587587 DOI: 10.3389/fpls.2023.1224691] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Accepted: 09/22/2023] [Indexed: 10/24/2023]
Abstract
It is of great significance to clarify the ecologically chemical stoichiometric characteristics of plant-litter-soil in vegetation restoration process for elucidating the nutrient cycling law and soil nutrient management of karst ecosystem. The carbon (C), nitrogen (N) and phosphorus (P) contents of leaves, litter and soil and their stoichiometry were determined in loquat (Eribotrya japonica) plantations in a karst plateau canyon after 3, 6, 10 and 15 years of restoration. The homeostasis characteristics of leaf N, P, and N:P with the change in soil nutrients during restoration were revealed. The results showed that leaf C, N, and P contents initially increased and then decreased with increasing years of restoration at the same sampling time. The contents of nutrients in soil and litter varied with increasing restoration years, with the highest values mostly appearing in May and July. This could be due to greater moisture in May and July, which helps with nutrient absorption and transformation. The leaf N:P ratio of loquat with different restoration years was 35.76-47.39, with an average of 40.06. Therefore, loquat leaves may experience P limitation in the growth process. The relationships between N, P and N:P in leaves and soil indexes could be simulated by a homeostasis model. Except for the weak sensitivity of loquat leaf N in 10 years, the other indexes and treatments had a certain homeostasis. Plants maintain homeostasis by regulating physiological responses in vivo in response to soil nutrient changes, indicating that loquat has good adaptability in karst desertification environments, but attention should focus on the management of soil P in the field as part of the vegetation restoration process. Therefore, in future research, we should combine the soil water and fertilizer conditions of different growing seasons in karst rocky desertification areas and provide scientific field management to ensure that the results of rocky desertification management can play a role in rural revitalization.
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Affiliation(s)
- Tinghui Hu
- School of Karst Science, Guizhou Engineering Laboratory for Karst Desertification Control and Eco-industry, Guizhou Normal University, Guiyang, Guizhou, China
- Guizhou Oil Research Institute, Guizhou Academy of Agricultural Sciences, Guiyang, Guizhou, China
| | - Kangning Xiong
- School of Karst Science, Guizhou Engineering Laboratory for Karst Desertification Control and Eco-industry, Guizhou Normal University, Guiyang, Guizhou, China
| | - Yanghua Yu
- School of Karst Science, Guizhou Engineering Laboratory for Karst Desertification Control and Eco-industry, Guizhou Normal University, Guiyang, Guizhou, China
| | - Jun Wang
- Guizhou Oil Research Institute, Guizhou Academy of Agricultural Sciences, Guiyang, Guizhou, China
| | - Yawei Wu
- Institute of Pomology Science, Guizhou Academy of Agricultural Sciences, Guiyang, Guizhou, China
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27
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Li W, Xiao Y. Microplastics increase soil microbial network complexity and trigger diversity-driven community assembly. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 333:122095. [PMID: 37385357 DOI: 10.1016/j.envpol.2023.122095] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2023] [Revised: 06/19/2023] [Accepted: 06/20/2023] [Indexed: 07/01/2023]
Abstract
The widespread existence of microplastics (MPs) in soil has been extensively demonstrated, and their presence would ineluctably change soil physicochemical properties and microbial community composition. However, there is limited understanding of how MPs affect soil microbial assembly. In this study, three different polymer types of MPs, i.e., high-density polyethylene (HDPE), polystyrene (PS), and polylactic acid (PLA), with the same particle size (100 μm) and dose (2%) were applied under the planted and unplanted condition, Pennisetum alopecuroides was chosen as a model species. Plant growth parameters, soil physicochemical properties, and microbial communities (including bacteria and eukaryotes) were determined. The assembly and the co-occurrence network of microbial communities were analyzed. Results revealed that the effect of MPs on soil physicochemical properties was type-dependent and could influenced by the presence of P . alopecuroides. MPs could enrich bacterial genera related to nitrogen cycle and some pathogens of eukaryotes. The presence of MPs changed bacterial and eukaryotic community assembly, in which diversity drove the deterministic/stochastic assembly processes. MPs addition increased the complexity of bacterial network, while had a minor effect on eukaryotic network. The inhibition of MPs on P . alopecuroides growth decayed over time, HDPE MPs was more harmful to P . alopecuroides growth than PS and PLA MPs. Our findings enormously improved our comprehensions of MPs-induced ecological impacts and interactions of soil bacterial and eukaryotic communities .
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Affiliation(s)
- Wanlin Li
- College of Agro-grassland Science, Nanjing Agricultural University, Nanjing, 210095, PR China
| | - Yan Xiao
- College of Agro-grassland Science, Nanjing Agricultural University, Nanjing, 210095, PR China.
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28
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Guo Y, Gu S, Wu K, Tanentzap AJ, Yu J, Liu X, Li Q, He P, Qiu D, Deng Y, Wang P, Wu Z, Zhou Q. Temperature-mediated microbial carbon utilization in China's lakes. GLOBAL CHANGE BIOLOGY 2023; 29:5044-5061. [PMID: 37427534 DOI: 10.1111/gcb.16840] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2022] [Accepted: 06/05/2023] [Indexed: 07/11/2023]
Abstract
Microbes play an important role in aquatic carbon cycling but we have a limited understanding of their functional responses to changes in temperature across large geographic areas. Here, we explored how microbial communities utilized different carbon substrates and the underlying ecological mechanisms along a space-for-time substitution temperature gradient of future climate change. The gradient included 47 lakes from five major lake regions in China spanning a difference of nearly 15°C in mean annual temperatures (MAT). Our results indicated that lakes from warmer regions generally had lower values of variables related to carbon concentrations and greater carbon utilization than those from colder regions. The greater utilization of carbon substrates under higher temperatures could be attributed to changes in bacterial community composition, with a greater abundance of Cyanobacteria and Actinobacteriota and less Proteobacteria in warmer lake regions. We also found that the core species in microbial networks changed with increasing temperature, from Hydrogenophaga and Rhodobacteraceae, which inhibited the utilization of amino acids and carbohydrates, to the CL500-29-marine-group, which promoted the utilization of all almost carbon substrates. Overall, our findings suggest that temperature can mediate aquatic carbon utilization by changing the interactions between bacteria and individual carbon substrates, and the discovery of core species that affect carbon utilization provides insight into potential carbon sequestration within inland water bodies under future climate warming.
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Affiliation(s)
- Yao Guo
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, the People's Republic of China
- University of Chinese Academy of Sciences, Beijing, the People's Republic of China
| | - Songsong Gu
- University of Chinese Academy of Sciences, Beijing, the People's Republic of China
- Key Laboratory for Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences (CAS), Beijing, the People's Republic of China
| | - Kaixuan Wu
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, the People's Republic of China
- University of Chinese Academy of Sciences, Beijing, the People's Republic of China
| | - Andrew J Tanentzap
- Ecosystems and Global Change Group, School of the Environment, Trent University, Peterborough, Ontario, Canada
- Ecosystems and Global Change Group, Department of Plant Sciences, University of Cambridge, Cambridge, UK
| | - Junqi Yu
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, the People's Republic of China
| | - Xiangfen Liu
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, the People's Republic of China
- University of Chinese Academy of Sciences, Beijing, the People's Republic of China
| | - Qianzheng Li
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, the People's Republic of China
- University of Chinese Academy of Sciences, Beijing, the People's Republic of China
| | - Peng He
- School of Environmental Studies, China University of Geosciences, Wuhan, the People's Republic of China
| | - Dongru Qiu
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, the People's Republic of China
| | - Ye Deng
- Key Laboratory for Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences (CAS), Beijing, the People's Republic of China
| | - Pei Wang
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, the People's Republic of China
| | - Zhenbin Wu
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, the People's Republic of China
- School of Environmental Studies, China University of Geosciences, Wuhan, the People's Republic of China
| | - Qiaohong Zhou
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, the People's Republic of China
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Zhang T, Wang J, Zhou S, Chen Y, Li D. Spatio-temporal dynamic diversity of bacterial alkaline phosphatase phoD gene and its environmental drivers in sediments during algal blooms: A case study of shallow Lake Taihu. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 336:117595. [PMID: 36871452 DOI: 10.1016/j.jenvman.2023.117595] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2022] [Revised: 02/13/2023] [Accepted: 02/24/2023] [Indexed: 06/18/2023]
Abstract
Bacterial alkaline phosphatase encoded by the phoD gene is essential for phosphorus (P) cycling in ecosystems. Until now, knowledge of the phoD gene diversity in shallow lake sediments is still lacking. In this study, from early to late stage of cyanobacterial blooms, we investigated the dynamic changes of the abundance of phoD gene (hereafter phoD abundance) and phoD-harboring bacterial community composition (hereafter phoD-harboring BCC) in sediments from different ecological regions of Lake Taihu, the third-largest shallow freshwater lake in China, as well as explored their environmental driving factors. Results showed that phoD abundance in the sediments of Lake Taihu showed spatiotemporal heterogeneity. The highest abundance was found in macrophyte-dominated area (mean 3.25*106copies/g DW), where Haliangium and Aeromicrobium were identified as the major contributors. Due to the negative impact of Microcystis species, phoD abundance decreased significantly (by 40.28% on average) during cyanobacterial blooms in all other regions except the estuary area. The phoD abundance in sediment was positively correlated with total organic carbon (TOC) and total nitrogen (TN). However, the relationship between phoD abundance and alkaline phosphatase activity (APA) varied with time, showing positive correlation (R2 = 0.763, P < 0.01) in the early stage of cyanobacterial blooms, but not (R2 = -0.052, P = 0.838) in the later stage. The predominant phoD-harboring genera in sediments were Kribbella, Streptomyces and Lentzea, all of which belong to Actinobacteria. Non-metric multidimensional scaling (NMDS) analysis revealed that the spatial heterogeneity of phoD-harboring BCC in the sediments of Lake Taihu was significantly higher than the temporal heterogeneity. TP and sand were the principle environmental factors affecting the phoD-harboring BCC in the sediments of the estuary area, while DO, pH, organic phosphorus (Po) and diester phosphorus were the key driving factors for other lake regions. We concluded that the C, N, and P cycles in sediments might work in concert. This study extends the understanding of the phoD gene diversity in shallow lake sediments.
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Affiliation(s)
- Tingxi Zhang
- School of Environment, Jiangsu Province Engineering Research Center of Environmental Risk Prevention and Emergency Response Technology, Nanjing Normal University, Nanjing, 210023, China; Jiangsu Center for Collaborative Innovation in Geographical Information Resource Development and Application, School of Geography Science, Nanjing Normal University, Nanjing, 210023, China.
| | - Jiaying Wang
- School of Environment, Jiangsu Province Engineering Research Center of Environmental Risk Prevention and Emergency Response Technology, Nanjing Normal University, Nanjing, 210023, China.
| | - Siqi Zhou
- School of Remote Sensing and Geomatics Engineering, Nanjing University of Information Science and Technology, Nanjing, 210044, China.
| | - Youling Chen
- School of Environment, Jiangsu Province Engineering Research Center of Environmental Risk Prevention and Emergency Response Technology, Nanjing Normal University, Nanjing, 210023, China.
| | - Defang Li
- School of Environment, Jiangsu Province Engineering Research Center of Environmental Risk Prevention and Emergency Response Technology, Nanjing Normal University, Nanjing, 210023, China.
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Tian Q, Zhang X, Yi H, Li Y, Xu X, He J, He L. Plant diversity drives soil carbon sequestration: evidence from 150 years of vegetation restoration in the temperate zone. FRONTIERS IN PLANT SCIENCE 2023; 14:1191704. [PMID: 37346142 PMCID: PMC10279892 DOI: 10.3389/fpls.2023.1191704] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Accepted: 05/15/2023] [Indexed: 06/23/2023]
Abstract
Large-scale afforestation is considered a natural way to address climate challenges (e.g., the greenhouse effect). However, there is a paucity of evidence linking plant diversity to soil carbon sequestration pathways during long-term natural restoration of temperate vegetation. In particular, the carbon sequestration mechanisms and functions of woody plants require further study. Therefore, we conducted a comparative study of plant diversity and soil carbon sequestration characteristics during 150 years of natural vegetation restoration in the temperate zone to provide a comprehensive assessment of the effects of long-term natural vegetation restoration processes on soil organic carbon stocks. The results suggested positive effects of woody plant diversity on carbon sequestration. In addition, fine root biomass and deadfall accumulation were significantly positively correlated with soil organic carbon stocks, and carbon was stored in large grain size aggregates (1-5 mm). Meanwhile, the diversity of Fabaceae and Rosaceae was observed to be important for soil organic carbon accumulation, and the carbon sequestration function of shrubs should not be neglected during vegetation restoration. Finally, we identified three plants that showed high potential for carbon sequestration: Lespedeza bicolor, Sophora davidii, and Cotoneaster multiflorus, which should be considered for inclusion in the construction of local artificial vegetation. Among them, L. bicolor is probably the best choice.
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Affiliation(s)
- Qilong Tian
- The Research Center of Soil and Water Conservation and Ecological Environment, Chinese Academy of Sciences and Ministry of Education, Yangling, Shaanxi, China
- Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water Resources, Yangling, Shaanxi, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Xiaoping Zhang
- The Research Center of Soil and Water Conservation and Ecological Environment, Chinese Academy of Sciences and Ministry of Education, Yangling, Shaanxi, China
- Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water Resources, Yangling, Shaanxi, China
- University of Chinese Academy of Sciences, Beijing, China
- Institute of Soil and Water Conservation, Northwest A&E University, Yangling, China
| | - Haijie Yi
- The Research Center of Soil and Water Conservation and Ecological Environment, Chinese Academy of Sciences and Ministry of Education, Yangling, Shaanxi, China
- Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water Resources, Yangling, Shaanxi, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Yangyang Li
- Institute of Soil and Water Conservation, Northwest A&E University, Yangling, China
| | - Xiaoming Xu
- Institute of Soil and Water Conservation, Northwest A&E University, Yangling, China
- College of Urban, Rural Planning and Architectural Engineering, Shangluo University, Shangluo, China
| | - Jie He
- Institute of Soil and Water Conservation, Northwest A&E University, Yangling, China
| | - Liang He
- Institute of Soil and Water Conservation, Northwest A&E University, Yangling, China
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Martín-Pinto P, Dejene T, Benucci GMN, Mediavilla O, Hernández-Rodríguez M, Geml J, Baldrian P, Sanz-Benito I, Olaizola J, Bonito G, Oria-de-Rueda JA. Co-responses of bacterial and fungal communities to fire management treatments in Mediterranean pyrophytic ecosystems. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 875:162676. [PMID: 36894081 DOI: 10.1016/j.scitotenv.2023.162676] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2022] [Revised: 02/22/2023] [Accepted: 03/02/2023] [Indexed: 06/18/2023]
Abstract
Cistus scrublands are pyrophytic ecosystems and occur widely across Mediterranean regions. Management of these scrublands is critical to prevent major disturbances, such as recurring wildfires. This is because management appears to compromise the synergies necessary for forest health and the provision of ecosystem services. Furthermore, it supports high microbial diversity, opening questions of how forest management practices impact belowground associated diversity as research related to this issue is scarce. This study aims to investigate the effects of different fire prevention treatments and site history on bacterial and fungi co-response and co-occurrence patterns over a fire-risky scrubland ecosystem. Two different site histories were studied by applying three different fire prevention treatments and samples were analyzed by amplification and sequencing of ITS2 and 16S rDNA for fungi and bacteria, respectively. The data revealed that site history, especially regarding fire occurrence, strongly influenced the microbial community. Young burnt areas tended to have a more homogeneous and lower microbial diversity, suggesting environmental filtering to a heat-resistant community. In comparison, young clearing history also showed a significant impact on the fungal community but not on the bacteria. Some bacteria genera were efficient predictors of fungal diversity and richness. For instance, Ktedonobacter and Desertibacter were a predictor of the presence of the edible mycorrhizal bolete Boletus edulis. These results demonstrate fungal and bacterial community co-response to fire prevention treatments and provide new tools for forecasting forest management impacts on microbial communities.
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Affiliation(s)
- Pablo Martín-Pinto
- Sustainable Forest Management Research Institute, University of Valladolid, Avda. Madrid 44, 34071 Palencia, Spain.
| | - Tatek Dejene
- Sustainable Forest Management Research Institute, University of Valladolid, Avda. Madrid 44, 34071 Palencia, Spain; Ethiopian Environment and Forest Research Institute (EEFRI), P. O. Box 30708 Code 1000, Addis Ababa, Ethiopia
| | - Gian Maria Niccolò Benucci
- Michigan State University, Department of Plant, Soil and Microbial Sciences, East Lansing, MI 48824, United States of America.
| | - Olaya Mediavilla
- Sustainable Forest Management Research Institute, University of Valladolid, Avda. Madrid 44, 34071 Palencia, Spain; IDForest - Biotecnología Forestal Aplicada, Calle Curtidores, 17, 34004 Palencia, Spain.
| | - María Hernández-Rodríguez
- Sustainable Forest Management Research Institute, University of Valladolid, Avda. Madrid 44, 34071 Palencia, Spain; IDForest - Biotecnología Forestal Aplicada, Calle Curtidores, 17, 34004 Palencia, Spain.
| | - József Geml
- MTA-EKE Lendület Environmental Microbiome Research Group, Eszterházy Károly University, Leányka u. 6, 3300 Eger, Hungary.
| | - Petr Baldrian
- Laboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences, Videnska 1083, 14200 Praha 4, Czech Republic.
| | - Ignacio Sanz-Benito
- Sustainable Forest Management Research Institute, University of Valladolid, Avda. Madrid 44, 34071 Palencia, Spain.
| | - Jaime Olaizola
- IDForest - Biotecnología Forestal Aplicada, Calle Curtidores, 17, 34004 Palencia, Spain.
| | - Gregory Bonito
- Michigan State University, Department of Plant, Soil and Microbial Sciences, East Lansing, MI 48824, United States of America.
| | - Juan Andrés Oria-de-Rueda
- Sustainable Forest Management Research Institute, University of Valladolid, Avda. Madrid 44, 34071 Palencia, Spain.
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Yao K, Cai A, Han J, Che R, Hao J, Wang F, Ye M, Jiang X. The characteristics and metabolic potentials of the soil bacterial community of two typical military demolition ranges in China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 874:162562. [PMID: 36871728 DOI: 10.1016/j.scitotenv.2023.162562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Revised: 02/25/2023] [Accepted: 02/26/2023] [Indexed: 06/18/2023]
Abstract
The response mechanism of soil microbiota in military polluted sites can effectively indicate the biotoxicity of ammunition. In this study, two military demolition ranges polluted soils of grenades and bullet were collected. According to high-throughput sequencing, after grenade explosion, the dominant bacteria in Site 1 (S1) are Proteobacteria (97.29 %) and Actinobacteria (1.05 %). The dominant bacterium in Site 2 (S2) is Proteobacteria (32.95 %), followed by Actinobacteria (31.17 %). After the military exercise, the soil bacterial diversity index declined significantly, and the bacterial communities interacted more closely. The indigenous bacteria in S1 were influenced more compared to those in S2. According to the environmental factor analysis, the bacteria composition can easily be influenced by heavy metals and organic pollutants, including Cu, Pb, Cr and Trinitrotoluene (TNT). About 269 metabolic pathways annotated in the Kyoto Encyclopedia of Genes and Genomes (KEGG) database were detected in bacterial communities, including nutrition metabolism (C, 4.09 %; N, 1.14 %; S, 0.82 %), external pollutant metabolism (2.52 %) and heavy metal detoxication (2.12 %), respectively. The explosion of ammunition changes the basic metabolism of indigenous bacteria, and heavy metal stress inhibits the TNT degradation ability of bacterial communities. The pollution degree and community structure influence the metal detoxication strategy at the contaminated sites together. Heavy metal ions in S1 are mainly discharged through membrane transporters, while heavy metal ions in S2 are mainly degraded through lipid metabolism and biosynthesis of secondary metabolites. The results obtained in this study can provide deep insight into the response mechanism of the soil bacterial community in military demolition ranges with composite pollutions of heavy metals and organic substances. CAPSULE: Heavy metal stress changed the composition, interaction and metabolism of indigenous communities in military demolition ranges, especially the TNT degradation process.
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Affiliation(s)
- Keyu Yao
- National Engineering Laboratory of Soil Nutrients Management, Pollution Control and Remediation Technologies, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Anjuan Cai
- Jiangsu Environmental Engineering Technology Co., Ltd, 210019, China
| | - Jin Han
- Jiangsu Environmental Engineering Technology Co., Ltd, 210019, China
| | - Ruijie Che
- Key Laboratory for Soft Chemistry and Functional Materials of Ministry of Education, Nanjing University of Science and Technology, Nanjing 210094, China; Jiangsu Province Engineering Research Center of Environmental Risk Prevention and Emergency Response Technology, School of Environment, Nanjing Normal University, Nanjing 210023, China
| | - Jiarong Hao
- Key Laboratory for Soft Chemistry and Functional Materials of Ministry of Education, Nanjing University of Science and Technology, Nanjing 210094, China; Jiangsu Province Engineering Research Center of Environmental Risk Prevention and Emergency Response Technology, School of Environment, Nanjing Normal University, Nanjing 210023, China
| | - Fenghe Wang
- Key Laboratory for Soft Chemistry and Functional Materials of Ministry of Education, Nanjing University of Science and Technology, Nanjing 210094, China; Jiangsu Province Engineering Research Center of Environmental Risk Prevention and Emergency Response Technology, School of Environment, Nanjing Normal University, Nanjing 210023, China.
| | - Mao Ye
- National Engineering Laboratory of Soil Nutrients Management, Pollution Control and Remediation Technologies, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China.
| | - Xin Jiang
- National Engineering Laboratory of Soil Nutrients Management, Pollution Control and Remediation Technologies, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
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Tang Q, Li Q, Tong L, Wu R, Xu J. Rhizospheric soil organic carbon accumulated but its molecular groups redistributed via rhizospheric soil microorganisms along multi-root Cerasus humilis plantation chronosequence at the karst rocky desertification control area. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023:10.1007/s11356-023-27588-9. [PMID: 37184792 DOI: 10.1007/s11356-023-27588-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Accepted: 05/08/2023] [Indexed: 05/16/2023]
Abstract
Though the relationships between the microorganism communities and the edaphic factors in rhizosphere soil along the plantation chronosequence have been widely reported, few researches have appeared on the interrelationship about rhizospheric soil microorganism community and soil organic carbon (SOC) under multi-root Cerasus humilis plantations of different age. In our study, the rhizospheric soil microbial communities, soil physicochemistry, and SOC molecular groups in plantations of 1-, 3-, and 5-year-old Cerasus humilis were investigated in karst rocky desertification control area of southwest China. It was found that karst rhizospheric soil moisture, total nitrogen, available potassium, and 46-60 ppm N-alkyl/methoxyl C decreased; however, SOC and fungal:bacterial ratio decreased along multi-root Cerasus humilis plantation chronosequence. Proteobacteria, Actinobacteriota, Acidobacteriota, and Ascomycota were recognized as the top 4 phyla in the karst rhizospheric soil microbial co-occurrence network. Moreover, Cerasus humilis plantations exerted significantly direct effect on rhizospheric soil microbial communities and soil physicochemical properties exerted significantly direct effects on SOC molecular groups. Our results suggested that the increased Cerasus humilis plantation years will promote C sequestration (e.g., SOC) with the continued input of root litter, root exudates, and plant litter. The inputted and activated C can be preferentially consumed by rhizospheric soil microorganisms and converted into microbial-derived compounds, which are finally incorporated into recalcitrant SOC pools. Hence, Cerasus humilis redistributed SOC molecular groups via rhizospheric soil microorganisms, and increased ratio of fungi:bacteria in rhizosphere was associated with C sequestration which could not be regarded as a widespread rule. Though our study is the first attempt to recognize the interaction between rhizospheric soil microbial community and SOC molecular groups at the karst rocky desertification control area, it provides a baseline for further research that ecological restoration can promote soil C sequestration via soil microorganisms in the early period of eco-restoration at karst area.
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Affiliation(s)
- Qin Tang
- Key Laboratory of Karst Ecosystem and Treatment of Rocky Desertification, Ministry of Natural Resources, Key Laboratory of Karst Dynamics, Ministry of Natural Resources & Guangxi, Institute of Karst Geology, Chinese Academy of Geological Sciences, Guilin, 541004, Guangxi, China
- School of Environmental Studies, China University of Geosciences, Wuhan, 430078, China
- International Research Center On Karst Under the Auspices of United Nations Educational, Scientific and Cultural Organization, Guilin, 541004, Guangxi, China
| | - Qiang Li
- Key Laboratory of Karst Ecosystem and Treatment of Rocky Desertification, Ministry of Natural Resources, Key Laboratory of Karst Dynamics, Ministry of Natural Resources & Guangxi, Institute of Karst Geology, Chinese Academy of Geological Sciences, Guilin, 541004, Guangxi, China.
- International Research Center On Karst Under the Auspices of United Nations Educational, Scientific and Cultural Organization, Guilin, 541004, Guangxi, China.
| | - Lingchen Tong
- Key Laboratory of Karst Ecosystem and Treatment of Rocky Desertification, Ministry of Natural Resources, Key Laboratory of Karst Dynamics, Ministry of Natural Resources & Guangxi, Institute of Karst Geology, Chinese Academy of Geological Sciences, Guilin, 541004, Guangxi, China
- International Research Center On Karst Under the Auspices of United Nations Educational, Scientific and Cultural Organization, Guilin, 541004, Guangxi, China
| | - Rui Wu
- Key Laboratory of Karst Ecosystem and Treatment of Rocky Desertification, Ministry of Natural Resources, Key Laboratory of Karst Dynamics, Ministry of Natural Resources & Guangxi, Institute of Karst Geology, Chinese Academy of Geological Sciences, Guilin, 541004, Guangxi, China
- International Research Center On Karst Under the Auspices of United Nations Educational, Scientific and Cultural Organization, Guilin, 541004, Guangxi, China
| | - Jiao Xu
- Key Laboratory of Karst Ecosystem and Treatment of Rocky Desertification, Ministry of Natural Resources, Key Laboratory of Karst Dynamics, Ministry of Natural Resources & Guangxi, Institute of Karst Geology, Chinese Academy of Geological Sciences, Guilin, 541004, Guangxi, China
- International Research Center On Karst Under the Auspices of United Nations Educational, Scientific and Cultural Organization, Guilin, 541004, Guangxi, China
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Zhang X, Zhao W, Kou Y, Fang K, Liu Y, He H, Liu Q. The contrasting responses of abundant and rare microbial community structures and co-occurrence networks to secondary forest succession in the subalpine region. Front Microbiol 2023; 14:1177239. [PMID: 37250033 PMCID: PMC10213230 DOI: 10.3389/fmicb.2023.1177239] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Accepted: 04/24/2023] [Indexed: 05/31/2023] Open
Abstract
Knowledge of variations in abundant and rare soil microbial communities and interactions during secondary forest succession is lacking. Soil samples were gathered from different secondary successional stages (grassland, shrubland, and secondary forest) to study the responses of abundant and rare bacterial and fungal communities, interactions and driving factors to secondary forest succession by Illumina sequencing of the 16S and ITS rRNA genes. The results showed that the α-diversities (Shannon index) of abundant bacteria and fungi revealed no significant changes during secondary forest succession, but increased significantly for rare bacteria. The abundant and rare bacterial and fungal β-diversities changed significantly during secondary forest succession. Network analysis showed no obvious changes in the topological properties (nodes, links, and average degree) of abundant microbial networks during secondary forest succession. In contrast, these properties of the rare microbial networks in the secondary forest were higher than those in the grassland and shrubland, indicating that rare microbial networks are more responsive to secondary forest succession than abundant microorganisms. Additionally, rare microbial networks revealed more microbial interactions and greater network complexity than abundant microbial networks due to their higher numbers of nodes and links. The keystone species differed between the abundant and rare microbial networks and consisted of 1 and 48 keystone taxa in the abundant and rare microbial networks, respectively. Soil TP was the most important influencing factor of abundant and rare bacterial communities. Successional stages and plant richness had the most important influences on abundant and rare fungal communities, respectively. C:P, SM and N:P were mainly related to abundant and rare microbial network topological properties. Our study indicates that abundant and rare microbial communities, interactions and driving factors respond differently to secondary forest succession.
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Affiliation(s)
- Xiaoying Zhang
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration and Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Wenqiang Zhao
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration and Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
| | - Yongping Kou
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration and Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
| | - Kai Fang
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration and Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
| | - Yanjiao Liu
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration and Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
| | - Heliang He
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration and Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
- University of Chinese Academy of Sciences, Beijing, China
- Faculty of Agriculture, Forestry and Food Engineering, Yibin University, Yibin, China
| | - Qing Liu
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration and Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
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Lu Y, Lyu M, Xiong X, Deng C, Jiang Y, Zeng M, Xie J. Understory ferns promote the restoration of soil microbial diversity and function in previously degraded lands. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 870:161934. [PMID: 36736396 DOI: 10.1016/j.scitotenv.2023.161934] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Revised: 01/27/2023] [Accepted: 01/27/2023] [Indexed: 06/18/2023]
Abstract
Microorganisms facilitate the recovery of previously degraded soils, such as degraded lands experiencing vegetation restoration and understory expansion, through vital soil functions like nutrient cycling and decomposing organic matter. Despite the role of microorganisms in recovery, little is known about the effects of the process on microbial diversity and function. Here, we performed an understory fern, Dicranopteris dichotoma (Thunb.) Berhn removal treatments nested within three Masson pine (Pinus massoniana L.) plantations with different restoration years in subtropical China. Three ferns treatments including no ferns cover, with ferns cover, and the ferns removal treatments were established to assess the impact of the ferns on soil microbial diversity and function during revegetation and drivers of observed changes. We combined high-throughput sequencing, network structure modeling, and function prediction of soil bacterial and fungal communities to determine microbial diversity and functions. Our results showed that soil bacterial and fungal diversity increased with restoration time. Understory ferns significantly increased soil microbial diversity in the un-restored land but the effect became smaller in two restored sites. Understory ferns significantly increased the relative abundance of bacterial phyla Proteobacteria and Acidobacteria, but decreased that of Chloroflexi and Firmicutes. Furthermore, the presence of ferns increased the abundance of Basidiomycota, but increased the abundance of Ascomycota. Co-occurrence network analysis revealed that the presence of ferns leads to more complex of bacterial networks with more connections, nodes, average degrees, betweenness, and degrees. The functional predictions indicate that aerobic chemoheterotrophy, chemoheterotrophy, and nitrogen fixation functional groups play key roles in the nutrient cycling of soils with ferns cover. The bacterial and fungal community compositions were strongly affected by revegetation and understory ferns as litter biomass and soil nitrogen were identified as the key environmental factors. Our study highlights the role of understory in facilitating microbial diversity and function recovery during degraded lands restoration.
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Affiliation(s)
- Yuming Lu
- Key Laboratory for Humid Subtropical Eco-geographical Processes of the Ministry of Education, School of Geographical Sciences, Fujian Normal University, Fuzhou 350007, China; Sanming Forest Ecosystem National Observation and Research Station, Sanming 365002, China
| | - Maokui Lyu
- Key Laboratory for Humid Subtropical Eco-geographical Processes of the Ministry of Education, School of Geographical Sciences, Fujian Normal University, Fuzhou 350007, China; Sanming Forest Ecosystem National Observation and Research Station, Sanming 365002, China.
| | - Xiaoling Xiong
- Key Laboratory for Humid Subtropical Eco-geographical Processes of the Ministry of Education, School of Geographical Sciences, Fujian Normal University, Fuzhou 350007, China; Sanming Forest Ecosystem National Observation and Research Station, Sanming 365002, China
| | - Cui Deng
- Key Laboratory for Humid Subtropical Eco-geographical Processes of the Ministry of Education, School of Geographical Sciences, Fujian Normal University, Fuzhou 350007, China; Sanming Forest Ecosystem National Observation and Research Station, Sanming 365002, China
| | - Yongmeng Jiang
- Key Laboratory for Humid Subtropical Eco-geographical Processes of the Ministry of Education, School of Geographical Sciences, Fujian Normal University, Fuzhou 350007, China; Sanming Forest Ecosystem National Observation and Research Station, Sanming 365002, China
| | - Min Zeng
- Key Laboratory for Humid Subtropical Eco-geographical Processes of the Ministry of Education, School of Geographical Sciences, Fujian Normal University, Fuzhou 350007, China; Sanming Forest Ecosystem National Observation and Research Station, Sanming 365002, China
| | - Jinsheng Xie
- Key Laboratory for Humid Subtropical Eco-geographical Processes of the Ministry of Education, School of Geographical Sciences, Fujian Normal University, Fuzhou 350007, China; Sanming Forest Ecosystem National Observation and Research Station, Sanming 365002, China.
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Wang R, Liu T, Lu C, Zhang Z, Guo P, Jia B, Hao B, Wang Y, Guo W. Bioorganic fertilizers improve the adaptability and remediation efficiency of Puccinellia distans in multiple heavy metals-contaminated saline soil by regulating the soil microbial community. JOURNAL OF HAZARDOUS MATERIALS 2023; 448:130982. [PMID: 36860055 DOI: 10.1016/j.jhazmat.2023.130982] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2022] [Revised: 02/04/2023] [Accepted: 02/07/2023] [Indexed: 06/18/2023]
Abstract
Soil salinization and heavy metal (HM) pollution are global environmental problems. Bioorganic fertilizers facilitate phytoremediation, but their roles and microbial mechanisms in natural HM-contaminated saline soils have not been explored. Therefore, greenhouse pot trials were conducted with three treatments: control (CK), manure bioorganic fertilizer (MOF), and lignite bioorganic fertilizer (LOF). The results showed that MOF and LOF significantly increased nutrient uptake, biomass, toxic ion accumulation in Puccinellia distans, soil available nutrients, SOC, and macroaggregates. More biomarkers were enriched in MOF and LOF. Network analysis confirmed that MOF and LOF increased the number of bacterial functional groups and fungal community stability and strengthened their positive association with plants; Bacteria have a more significant effect on phytoremediation. Most biomarkers and keystones play important roles in promoting plant growth and stress resistance in the MOF and LOF treatments. In summary, besides enrichment of soil nutrients, MOF and LOF can also improve the adaptability and phytoremediation efficiency of P. distans by regulating the soil microbial community, with LOF having a greater effect.
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Affiliation(s)
- Run Wang
- Inner Mongolia Key Laboratory of Environmental Pollution Control and Waste Resource Recycle, Ministry of Education Collaborative Innovation Center for Grassland Ecological Security, Ministry of Education Key Laboratory of Ecology and Resource Use of the Mongolian Plateau, School of Ecology and Environment, Inner Mongolia University, Hohhot 010021, China
| | - Tai Liu
- Inner Mongolia Key Laboratory of Environmental Pollution Control and Waste Resource Recycle, Ministry of Education Collaborative Innovation Center for Grassland Ecological Security, Ministry of Education Key Laboratory of Ecology and Resource Use of the Mongolian Plateau, School of Ecology and Environment, Inner Mongolia University, Hohhot 010021, China
| | - Chengyan Lu
- Inner Mongolia Key Laboratory of Environmental Pollution Control and Waste Resource Recycle, Ministry of Education Collaborative Innovation Center for Grassland Ecological Security, Ministry of Education Key Laboratory of Ecology and Resource Use of the Mongolian Plateau, School of Ecology and Environment, Inner Mongolia University, Hohhot 010021, China
| | - Zhechao Zhang
- Inner Mongolia Key Laboratory of Environmental Pollution Control and Waste Resource Recycle, Ministry of Education Collaborative Innovation Center for Grassland Ecological Security, Ministry of Education Key Laboratory of Ecology and Resource Use of the Mongolian Plateau, School of Ecology and Environment, Inner Mongolia University, Hohhot 010021, China
| | - Peiran Guo
- Inner Mongolia Key Laboratory of Environmental Pollution Control and Waste Resource Recycle, Ministry of Education Collaborative Innovation Center for Grassland Ecological Security, Ministry of Education Key Laboratory of Ecology and Resource Use of the Mongolian Plateau, School of Ecology and Environment, Inner Mongolia University, Hohhot 010021, China
| | - Bingbing Jia
- Inner Mongolia Key Laboratory of Environmental Pollution Control and Waste Resource Recycle, Ministry of Education Collaborative Innovation Center for Grassland Ecological Security, Ministry of Education Key Laboratory of Ecology and Resource Use of the Mongolian Plateau, School of Ecology and Environment, Inner Mongolia University, Hohhot 010021, China
| | - Baihui Hao
- Inner Mongolia Key Laboratory of Environmental Pollution Control and Waste Resource Recycle, Ministry of Education Collaborative Innovation Center for Grassland Ecological Security, Ministry of Education Key Laboratory of Ecology and Resource Use of the Mongolian Plateau, School of Ecology and Environment, Inner Mongolia University, Hohhot 010021, China
| | - Yuchen Wang
- Inner Mongolia Key Laboratory of Environmental Pollution Control and Waste Resource Recycle, Ministry of Education Collaborative Innovation Center for Grassland Ecological Security, Ministry of Education Key Laboratory of Ecology and Resource Use of the Mongolian Plateau, School of Ecology and Environment, Inner Mongolia University, Hohhot 010021, China
| | - Wei Guo
- Inner Mongolia Key Laboratory of Environmental Pollution Control and Waste Resource Recycle, Ministry of Education Collaborative Innovation Center for Grassland Ecological Security, Ministry of Education Key Laboratory of Ecology and Resource Use of the Mongolian Plateau, School of Ecology and Environment, Inner Mongolia University, Hohhot 010021, China.
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Shu X, Hu Y, Liu W, Xia L, Zhang Y, Zhou W, Liu W, Zhang Y. Linking between soil properties, bacterial communities, enzyme activities, and soil organic carbon mineralization under ecological restoration in an alpine degraded grassland. Front Microbiol 2023; 14:1131836. [PMID: 37180269 PMCID: PMC10167489 DOI: 10.3389/fmicb.2023.1131836] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2022] [Accepted: 03/17/2023] [Indexed: 04/08/2023] Open
Abstract
Soil organic carbon (SOC) mineralization is affected by ecological restoration and plays an important role in the soil C cycle. However, the mechanism of ecological restoration on SOC mineralization remains unclear. Here, we collected soils from the degraded grassland that have undergone 14 years of ecological restoration by planting shrubs with Salix cupularis alone (SA) and, planting shrubs with Salix cupularis plus planting mixed grasses (SG), with the extremely degraded grassland underwent natural restoration as control (CK). We aimed to investigate the effect of ecological restoration on SOC mineralization at different soil depths, and to address the relative importance of biotic and abiotic drivers of SOC mineralization. Our results documented the statistically significant impacts of restoration mode and its interaction with soil depth on SOC mineralization. Compared with CK, the SA and SG increased the cumulative SOC mineralization but decreased C mineralization efficiency at the 0-20 and 20-40 cm soil depths. Random Forest analyses showed that soil depth, microbial biomass C (MBC), hot-water extractable organic C (HWEOC), and bacterial community composition were important indicators that predicted SOC mineralization. Structural equal modeling indicated that MBC, SOC, and C-cycling enzymes had positive effects on SOC mineralization. Bacterial community composition regulated SOC mineralization via controlling microbial biomass production and C-cycling enzyme activities. Overall, our study provides insights into soil biotic and abiotic factors in association with SOC mineralization, and contributes to understanding the effect and mechanism of ecological restoration on SOC mineralization in a degraded grassland in an alpine region.
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Affiliation(s)
- Xiangyang Shu
- College of Resources, Sichuan Agricultural University, Chengdu, China
| | - Yufu Hu
- College of Resources, Sichuan Agricultural University, Chengdu, China
| | - Weijia Liu
- College of Resources, Sichuan Agricultural University, Chengdu, China
- Chengdu Academy of Agriculture and Forestry Sciences, Chengdu, China
| | - Longlong Xia
- Institute for Meteorology and Climate Research (IMK-IFU), Karlsruhe Institute of Technology, Karlsruhe, Baden-Wurttemberg, Germany
| | - Yanyan Zhang
- College of Resources, Sichuan Agricultural University, Chengdu, China
| | - Wei Zhou
- College of Resources, Sichuan Agricultural University, Chengdu, China
| | - Wanling Liu
- College of Resources, Sichuan Agricultural University, Chengdu, China
| | - Yulin Zhang
- Department of Civil Engineering, The University of Hong Kong, Pokfulam, Hong Kong SAR, China
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Graham EB, Knelman JE. Implications of Soil Microbial Community Assembly for Ecosystem Restoration: Patterns, Process, and Potential. MICROBIAL ECOLOGY 2023; 85:809-819. [PMID: 36735065 DOI: 10.1007/s00248-022-02155-w] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2022] [Accepted: 12/02/2022] [Indexed: 05/04/2023]
Abstract
While it is now widely accepted that microorganisms provide essential functions in restoration ecology, the nature of relationships between microbial community assembly and ecosystem recovery remains unclear. There has been a longstanding challenge to decipher whether microorganisms facilitate or simply follow ecosystem recovery, and evidence for each is mixed at best. We propose that understanding microbial community assembly processes is critical to understanding the role of microorganisms during ecosystem restoration and thus optimizing management strategies. We examine how the connection between environment, community structure, and function is fundamentally underpinned by the processes governing community assembly of these microbial communities. We review important factors to consider in evaluating microbial community structure in the context of ecosystem recovery as revealed in studies of microbial succession: (1) variation in community assembly processes, (2) linkages to ecosystem function, and (3) measurable microbial community attributes. We seek to empower restoration ecology with microbial assembly and successional understandings that can generate actionable insights and vital contexts for ecosystem restoration efforts.
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Affiliation(s)
- Emily B Graham
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA.
- School of Biological Sciences, Washington State University, Richland, WA, USA.
| | - Joseph E Knelman
- Institute for Arctic and Alpine Research, University of Colorado, Boulder, CO, USA
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Shi CH, Wang XQ, Jiang S, Zhang LQ, Luo J. Revealing the role of the rhizosphere microbiota in reproductive growth for fruit productivity when inorganic fertilizer is partially replaced by organic fertilizer in pear orchard fields. Microb Biotechnol 2023; 16:1373-1392. [PMID: 36965164 DOI: 10.1111/1751-7915.14253] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2023] [Revised: 03/08/2023] [Accepted: 03/12/2023] [Indexed: 03/27/2023] Open
Abstract
In order to address the global crisis in pear productivity, there has been increased attention given to advocating for the use of organic fertilizers. As part of this effort, researchers have been investigating the microbial properties of organic fertilizers to better understand their potential impact on fruit productivity. Our research focused specifically on the impact of four different ratios of sheep manure (SM) and chemical fertilizers (CF) on pear productivity. We found that replacing CF with SM resulted in a proliferation of gammaproteobacteria, Chlamydiae, Bastocatellia and Clostridia in the soil rhizosphere, which is the region around the roots of plants where most nutrient uptake occurs. Using redundancy analysis, we were able to determine that SM was particularly effective at promoting the growth of gammaproteobacteria and clostridia, which were associated with C:N ratios around 14:1 as well as the availability of K, Fe, Zn and Cu. This combination of factors was conducive to a transition from vegetative growth to reproductive growth, resulting in an increase in pear production from 43 to 56 tons per hectare. We also discovered that Blastociella acts as a buffering system in regulating soil acidity. Taken together, our findings indicate that a combination of SM and CF can improve the abundance of beneficial bacteria in the rhizosphere, leading to an increase in pear productivity.
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Affiliation(s)
- Chun-Hui Shi
- Forest & Fruit Tree Research Institute, Shanghai Academy of Agriculture Sciences, Shanghai, China
- Shanghai Key Laboratory of Facility Horticulture Technology, Shanghai, China
| | - Xiao-Qing Wang
- Forest & Fruit Tree Research Institute, Shanghai Academy of Agriculture Sciences, Shanghai, China
- Shanghai Key Laboratory of Facility Horticulture Technology, Shanghai, China
| | - Shuang Jiang
- Forest & Fruit Tree Research Institute, Shanghai Academy of Agriculture Sciences, Shanghai, China
- Shanghai Key Laboratory of Facility Horticulture Technology, Shanghai, China
| | - Li-Qing Zhang
- Forest & Fruit Tree Research Institute, Shanghai Academy of Agriculture Sciences, Shanghai, China
- Shanghai Key Laboratory of Facility Horticulture Technology, Shanghai, China
| | - Jun Luo
- Forest & Fruit Tree Research Institute, Shanghai Academy of Agriculture Sciences, Shanghai, China
- Shanghai Key Laboratory of Facility Horticulture Technology, Shanghai, China
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Loiola M, Silva AET, Krull M, Barbosa FA, Galvão EH, Patire VF, Cruz ICS, Barros F, Hatje V, Meirelles PM. Mangrove microbial community recovery and their role in early stages of forest recolonization within shrimp ponds. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 855:158863. [PMID: 36126709 DOI: 10.1016/j.scitotenv.2022.158863] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2022] [Revised: 09/14/2022] [Accepted: 09/15/2022] [Indexed: 06/15/2023]
Abstract
Shrimp farming is blooming worldwide, posing a severe threat to mangroves and its multiple goods and ecosystem services. Several studies reported the impacts of aquaculture on mangrove biotic communities, including microbiomes. However, little is known about how mangrove soil microbiomes would change in response to mangrove forest recolonization. Using genome-resolved metagenomics, we compared the soil microbiome of mangrove forests (both with and without the direct influence of shrimp farming effluents) with active shrimp farms and mangroves under a recolonization process. We found that the structure and composition of active shrimp farms microbial communities differ from the control mangrove forests, mangroves under the impact of the shrimp farming effluents, and mangroves under recolonization. Shrimp farming ponds microbiomes have lower microbial diversity and are dominated by halophilic microorganisms, presenting high abundance of multiple antibiotic resistance genes. On the other hand, control mangrove forests, impacted mangroves (exposed to the shrimp farming effluents), and recolonization ponds were more diverse, with a higher abundance of genes related to carbon mobilization. Our data also indicated that the microbiome is recovering in the mangrove recolonization ponds, performing vital metabolic functions and functionally resembling microbiomes found in those soils of neighboring control mangrove forests. Despite highlighting the damage caused by the habitat changes in mangrove soil microbiome community and functioning, our study sheds light on these systems incredible recovery capacity. Our study shows the importance of natural mangrove forest recovery, enhancing ecosystem services by the soil microbial communities even in a very early development stage of mangrove forest, thus encouraging mangrove conservation and restoration efforts worldwide.
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Affiliation(s)
- Miguel Loiola
- Instituto de Biologia, Universidade Federal da Bahia, Salvador, Brazil
| | | | - Marcos Krull
- Leibniz Centre for Agricultural Landscape Research (ZALF), Germany
| | | | | | - Vinicius F Patire
- Centro Interdisciplinar de Energia e Ambiente (CIENAM), Universidade Federal da Bahia, Brazil
| | | | - Francisco Barros
- Instituto de Biologia, Universidade Federal da Bahia, Salvador, Brazil; Instituto Nacional de Estudos Interdisciplinares e Transdisciplinares em Ecologia e Evolução (IN-TREE), Brazil
| | - Vanessa Hatje
- Centro Interdisciplinar de Energia e Ambiente (CIENAM), Universidade Federal da Bahia, Brazil; Instituto de Química, Universidade Federal da Bahia, Brazil
| | - Pedro Milet Meirelles
- Instituto de Biologia, Universidade Federal da Bahia, Salvador, Brazil; Instituto Nacional de Estudos Interdisciplinares e Transdisciplinares em Ecologia e Evolução (IN-TREE), Brazil.
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Li Q, Qiu J, Liang Y, Lan G. Soil bacterial community changes along elevation gradients in karst graben basin of Yunnan-Kweichow Plateau. Front Microbiol 2022; 13:1054667. [PMID: 36620048 PMCID: PMC9813600 DOI: 10.3389/fmicb.2022.1054667] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Accepted: 12/02/2022] [Indexed: 12/24/2022] Open
Abstract
Elevation gradients could provide natural experiments to examine geomorphological influences on biota ecology and evolution, however little is known about microbial community structures with soil depths along altitudinal gradients in karst graben basin of Yunnan-Kweichow Plateau. Here, bulk soil in A layer (0 ~ 10 cm) and B layer (10 ~ 20 cm) from two transect Mounts were analyzed by using high-throughput sequencing coupled with physicochemical analysis. It was found that the top five phyla in A layer were Proteobacteria, Acidobacteria, Actinobacteria, Bacteroidetes, and Verrucomicrobia, and the top five phyla in B layer were Proteobacteria, Acidobacteria, Actinobacteria, Verrucomicrobia, and Chloroflexi in a near-neutral environment. Edaphic parameters were different in two layers along altitudinal gradients. Besides that, soil microbial community compositions varied along altitudinal gradient, and soil organic carbon (SOC) and total nitrogen (TN) increased monotonically with increasing elevation. It was further observed that Shannon indexes with increasing altitudes in two transect Mounts decreased monotonically with significant difference (p = 0.001), however beta diversity followed U-trend with significant difference (p = 0.001). The low proportions of unique operational taxonomic units (OTUs) appeared at high altitude areas which impact the widely accepted elevation Rapoport's rules. The dominant Bradyrhizobium (alphaproteobacterial OTU 1) identified at high altitudes in two layers constitutes the important group of free-living diazotrophs and could bring fixed N into soils, which simultaneously enhances SOC and TN accumulation at high altitudes (p < 0.01). Due to different responses of bacterial community to environmental changes varying with soil depths, altitudinal gradients exerted negative effects on soil bacterial communities via soil physical properties and positive effects on soil bacterial diversities via soil chemical properties in A layer, however the results in B layer were opposite. Overall, our study is the first attempt to bring a deeper understanding of soil microbial structure patterns along altitudinal gradients at karst graben basin areas.
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Affiliation(s)
- Qiang Li
- Key Laboratory of Karst Ecosystem and Treatment of Rocky Desertification, MNR, Key Laboratory of Karst Dynamics, MNR & GZAR, Institute of Karst Geology, Chinese Academy of Geological Sciences, Guilin, China,International Research Center on Karst under the Auspices of UNESCO, Guilin, China,*Correspondence: Qiang Li, ✉
| | - Jiangmei Qiu
- Key Laboratory of Karst Ecosystem and Treatment of Rocky Desertification, MNR, Key Laboratory of Karst Dynamics, MNR & GZAR, Institute of Karst Geology, Chinese Academy of Geological Sciences, Guilin, China,International Research Center on Karst under the Auspices of UNESCO, Guilin, China
| | - Yueming Liang
- Key Laboratory of Karst Ecosystem and Treatment of Rocky Desertification, MNR, Key Laboratory of Karst Dynamics, MNR & GZAR, Institute of Karst Geology, Chinese Academy of Geological Sciences, Guilin, China,International Research Center on Karst under the Auspices of UNESCO, Guilin, China
| | - Gaoyong Lan
- Key Laboratory of Karst Ecosystem and Treatment of Rocky Desertification, MNR, Key Laboratory of Karst Dynamics, MNR & GZAR, Institute of Karst Geology, Chinese Academy of Geological Sciences, Guilin, China,International Research Center on Karst under the Auspices of UNESCO, Guilin, China
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Li X, Jin Z, Xiong L, Tong L, Zhu H, Zhang X, Qin G. Effects of Land Reclamation on Soil Bacterial Community and Potential Functions in Bauxite Mining Area. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2022; 19:16921. [PMID: 36554801 PMCID: PMC9778865 DOI: 10.3390/ijerph192416921] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/21/2022] [Revised: 12/06/2022] [Accepted: 12/12/2022] [Indexed: 06/17/2023]
Abstract
Studying the characteristics of microorganisms in mine reclamation sites can provide a scientific reference basis for mine land reclamation. Soils in the plough layer (0-20 cm) of the bauxite mine plots in Pingguo city, Guangxi Zhuang Autonomous Region, China, with different reclamation years were used as the research objects. The community structure of soil bacteria was analyzed with high-throughput sequencing technology. The results show the following: (1) Reclamation significantly increased the contents of soil nutrients (p < 0.05). (2) The relative abundances of Proteobacteria were high (22.90~41.56%) in all plots, and reclamation significantly reduced the relative abundances of Firmicutes (3.42-10.77%) compared to that in the control plot (24.74%) (p < 0.05). The relative abundances of α-proteobacteria generally increased while the reclamation year increased. The relative abundances of α-proteobacteria and γ-proteobacteria showed significant positive correlations with soil carbon, nitrogen, and phosphorus nutrients (p < 0.01). The relative abundance of Acidobacteria Group 6 showed significant positive correlations with soil exchangeable Ca and Mg (p < 0.01). (3) Bacterial co-occurrence network showed more Copresence interactions in all plots (50.81-58.39%). The reclaimed plots had more nodes, higher modularity, and longer characteristic path length than the control plot, and the keystone taxa changed in different plots. (4) The chemoheterotrophy and aerobic chemoheterotrophy were the most abundant functional groups in all plots (35.66-48.26%), while reclamation reduced the relative abundance of fermentation groups (1.75-11.21%). The above findings indicated that reclamation improved soil nutrients, changed the bacterial community structure and potential functions, and accelerated the microbial stabilization of the reclaimed soil.
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Affiliation(s)
- Xuesong Li
- College of Environmental Science and Engineering, Guilin University of Technology, Guilin 541004, China
| | - Zhenjiang Jin
- College of Environmental Science and Engineering, Guilin University of Technology, Guilin 541004, China
- Collaborative Innovation Center for Water Pollution Control and Water Safety in Karst Area, Guilin University of Technology, Guilin 541004, China
- Guangxi Key Laboratory of Environmental Pollution Control Theory and Technology, Guilin University of Technology, Guilin 541004, China
| | - Liyuan Xiong
- College of Environmental Science and Engineering, Guilin University of Technology, Guilin 541004, China
| | - Lingchen Tong
- College of Environmental Science and Engineering, Guilin University of Technology, Guilin 541004, China
| | - Hongying Zhu
- College of Environmental Science and Engineering, Guilin University of Technology, Guilin 541004, China
| | - Xiaowen Zhang
- College of Environmental Science and Engineering, Guilin University of Technology, Guilin 541004, China
| | - Guangfa Qin
- College of Environmental Science and Engineering, Guilin University of Technology, Guilin 541004, China
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He G, Peng T, Guo Y, Wen S, Ji L, Luo Z. Forest succession improves the complexity of soil microbial interaction and ecological stochasticity of community assembly: Evidence from Phoebe bournei-dominated forests in subtropical regions. Front Microbiol 2022; 13:1021258. [PMID: 36519170 PMCID: PMC9742230 DOI: 10.3389/fmicb.2022.1021258] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2022] [Accepted: 11/08/2022] [Indexed: 10/12/2023] Open
Abstract
Forest succession is a central ecological topic, due to the importance of the associated dynamic processes for terrestrial ecosystems. However, very little is currently known about the community assembly and interaction of soil microbial communities along forest successional trajectories, particularly regarding the microbial community dynamics in contrasting seasons. To bridge these knowledge gaps, we studied soil bacterial and fungal community compositions, assemblages, and co-occurrence networks in a well-established successional gradient of Phoebe bournei-dominated forest, spanning about 65 years of forest development in a subtropical region. Illumina MiSeq sequencing of 16S and ITS genes was employed for the assessment of soil bacterial and fungal community composition and diversity, respectively. The relative abundance and α-diversity of soil bacteria and fungi showed a differential trend over forest succession. The dominant fungal phyla (Basidiomycota and Ascomycota) changed more frequently than the dominant bacterial phyla (Proteobacteria, Acidobacteriota, and Actinobacteriota), indicating that soil fungi have a more sensitive relationship with forest succession compared with bacteria. The soil microbial community variation induced by forest succession was significantly affected by soil total phosphorus, dissolved organic carbon content and pH. Compared to deterministic processes, stochastic processes mainly dominated the community assembly of soil microbial communities. Meanwhile, the relative importance of stochasticity in soil fungal communities increased in the later stages. In Particular, dispersal limitation and drift accounted for a large proportion of bacterial and fungal community assembly, respectively. In addition, the co-occurrence networks of soil microbial communities became more complex as succession proceeds. Soil bacteria and fungi exhibited more competition and cooperation along the forest successional gradient. Collectively, our findings suggest that forest succession improves the complexity of soil microbial interactions and the ecological stochasticity of community assembly in Phoebe bournei-dominated forests, providing key insights into the relationship between microbial communities and forest succession.
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Affiliation(s)
| | | | | | | | - Li Ji
- School of Forestry, Central South University of Forestry and Technology, Changsha, China
| | - Zhong Luo
- School of Forestry, Central South University of Forestry and Technology, Changsha, China
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Meng L, Xu C, Wu F. Microbial co-occurrence networks driven by low-abundance microbial taxa during composting dominate lignocellulose degradation. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 845:157197. [PMID: 35839876 DOI: 10.1016/j.scitotenv.2022.157197] [Citation(s) in RCA: 44] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2022] [Revised: 06/27/2022] [Accepted: 07/02/2022] [Indexed: 06/15/2023]
Abstract
Lignocellulose, which contains cellulose, hemicellulose and lignin, is one of the most important factors determining the rate and quality of compost decomposition, and the microbial community composition affects the rate of lignocellulose decomposition. Interactions between microbial taxa contribute significantly to ecosystem energy flow and material cycling. However, it is not clear how interactions between microbial taxa affect the degradation of lignocellulose during the composting process. For this reason we carried out aerobic co-composting experiments with maize straw and cattle manure to explore the contribution of microbial community diversity and the interaction between taxa to lignocellulosic degradation. The results showed that moisture and temperature had the greatest effect on microbial communities during composting and that lignocellulose degradation was dominated by microbial co-occurrence networks rather than microbial community diversity. Overall co-occurrence network and bacterial-fungal interactions explained 23.9-84.1 % of lignocellulosic degradation, whereas microbial diversity only accounted for 24.6-31.5 %. Interestingly, keystone taxa analysis of the microbial co-occurrence networks revealed that low-abundance taxa influenced microbial interactions driving lignocellulose degradation. Our results provide a new perspective for understanding lignocellulose degradation during composting, offering insights into important microbial interaction mechanisms for improving compost quality and efficiency.
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Affiliation(s)
- Lingxu Meng
- College of Ecology and Environment, Inner Mongolia University, Hohhot 010000, China
| | - Chunxue Xu
- College of Ecology and Environment, Inner Mongolia University, Hohhot 010000, China
| | - Fanlin Wu
- College of Ecology and Environment, Inner Mongolia University, Hohhot 010000, China
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Short-Term Vegetation Restoration Enhances the Complexity of Soil Fungal Network and Decreased the Complexity of Bacterial Network. J Fungi (Basel) 2022; 8:jof8111122. [PMID: 36354889 PMCID: PMC9695196 DOI: 10.3390/jof8111122] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Revised: 10/14/2022] [Accepted: 10/19/2022] [Indexed: 11/17/2022] Open
Abstract
Different vegetation restoration methods may affect the soil’s physicochemical properties and microbial communities. However, it is not known how the microbial network’s complexity of the bacterial and fungal communities respond to short-term vegetation restoration. We conducted a short-term ecological restoration experiment to reveal the response of the soil’s microbial community and microbial network’s stability to initial vegetation restoration during the restoration of the degraded grassland ecosystem. The two restoration methods (sowing alfalfa (Medicago sativa, AF) and smooth brome (Bromus inermis, SB)) had no significant effect on the alpha diversity of the fungal community, but the SB significantly increased the alpha diversity of the soil surface bacterial community (p < 0.01). The results of NMDS showed that the soil’s fungal and bacterial communities were altered by a short-term vegetation restoration, and they showed that the available phosphorus (AP), available potassium (AK), and nitrate nitrogen (nitrate-N) were closely related to changes in bacterial and fungal communities. Moreover, a short-term vegetation restoration significantly increased the complexity and stability of fungi ecological networks, but the opposite was the case with the bacteria. Our findings confirm that ecological restoration by sowing may be favorable to the amelioration of soil fungi complexity and stability in the short-term. Such findings may have important implications for soil microbial processes in vegetation recovery.
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Wang Y, Wang J, Zou X, Qu M, Li J. Groundwater depth regulates assembly processes of abundant and rare bacterial communities across arid inland river basin. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 319:115767. [PMID: 35982567 DOI: 10.1016/j.jenvman.2022.115767] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Revised: 06/18/2022] [Accepted: 07/13/2022] [Indexed: 06/15/2023]
Abstract
Although numerous studies on bacterial biogeographic patterns in dryland have been conducted, bacterial community assembly across arid inland river basins is unclear. Here, we assessed the ecological drivers that regulate the assembly processes of abundant (ABS) and rare (RBS) bacterial subcommunities based on 162 soil samples collected in an arid inland river basin of China. The results showed that: (1) ABS exhibited a steeper distance-decay slope, and were more strongly affected by dispersal limitation (75.5% and 84.5%), than RBS in surface and subsurface soil. RBS were predominantly controlled by variable selection (54.6% and 50.2%). (2) Soil electric conductivity played a decisive role in mediating the balance between deterministic and stochastic processes of ABS and RBS in surface soil, increasing soil electric conductivity increased the importance of deterministic process. For subsurface soil, soil available phosphorus (SAP) and soil pH drove the balance in the assembly processes of ABS and RBS, respectively. The RBS shifted from determinism to stochasticity with decreased pH, while the dominance of deterministic processes was higher in low-SAP sites. (3) Groundwater depth seasonality had substantial effects on the assembly processes of ABS and RBS, but groundwater depth seasonality affected them indirectly mainly by regulating soil properties. Collectively, our study provides robust evidence that groundwater-driven variations in soil properties mediates the community assembly process of soil bacteria in arid inland river basins. This finding is of importance for forecasting the dynamics of soil microbial community and soil process in response to current and future depleted groundwater.
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Affiliation(s)
- Yin Wang
- School of Ecology and Nature Conservation, Beijing Forestry University, No. 35 Qinghua East Road, Haidian District, Beijing, 100083, China.
| | - Jianming Wang
- School of Ecology and Nature Conservation, Beijing Forestry University, No. 35 Qinghua East Road, Haidian District, Beijing, 100083, China.
| | - Xuge Zou
- School of Ecology and Nature Conservation, Beijing Forestry University, No. 35 Qinghua East Road, Haidian District, Beijing, 100083, China.
| | - Mengjun Qu
- School of Ecology and Nature Conservation, Beijing Forestry University, No. 35 Qinghua East Road, Haidian District, Beijing, 100083, China.
| | - Jingwen Li
- School of Ecology and Nature Conservation, Beijing Forestry University, No. 35 Qinghua East Road, Haidian District, Beijing, 100083, China.
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Yang W, Diao L, Wang Y, Yang X, Zhang H, Wang J, Luo Y, An S, Cheng X. Responses of soil fungal communities and functional guilds to ~160 years of natural revegetation in the Loess Plateau of China. Front Microbiol 2022; 13:967565. [PMID: 36118195 PMCID: PMC9479326 DOI: 10.3389/fmicb.2022.967565] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2022] [Accepted: 08/01/2022] [Indexed: 12/03/2022] Open
Abstract
Natural revegetation has been widely confirmed to be an effective strategy for the restoration of degraded lands, particularly in terms of rehabilitating ecosystem productivity and soil nutrients. Yet the mechanisms of how natural revegetation influences the variabilities and drivers of soil residing fungal communities, and its downstream effects on ecosystem nutrient cycling are not well understood. For this study, we investigated changes in soil fungal communities along with ~160 years of natural revegetation in the Loess Plateau of China, employing Illumina MiSeq DNA sequencing analyses. Our results revealed that the soil fungal abundance was greatly enhanced during the later stages of revegetation. As revegetation progresses, soil fungal richness appeared first to rise and then decline at the climax Quercus liaotungensis forest stage. The fungal Shannon and Simpson diversity indexes were the lowest and highest at the climax forest stage among revegetation stages, respectively. Principal component analysis, Bray–Curtis similarity indices, and FUNGuild function prediction suggested that the composition, trophic modes, and functional groups for soil fungal communities gradually shifted along with natural revegetation. Specifically, the relative abundances of Basidiomycota, Agaricomycetes, Eurotiomycetes, and ectomycorrhizal fungi progressively increased, while that of Ascomycota, Sordariomycetes, Dothideomycetes, Tremellomycetes, saprotrophic, pathotrophic, arbuscular mycorrhizal fungi, and endophyte fungi gradually decreased along with natural revegetation, respectively. The most enriched members of Basidiomycota (e.g., Agaricomycetes, Agaricales, Cortinariaceae, Cortinarius, Sebacinales, Sebacinaceae, Tricholomataceae, Tricholoma, Russulales, and Russulaceae) were found at the climax forest stage. As important carbon (C) sources, the most enriched symbiotic fungi (particularly ectomycorrhizal fungi containing more recalcitrant compounds) can promote organic C and nitrogen (N) accumulation in soils of climax forest. However, the most abundant of saprotrophic fungi in the early stages of revegetation decreased soil organic C and N accumulation by expediting the decomposition of soil organic matter. Our results suggest that natural revegetation can effectively restore soil fungal abundance, and modify soil fungal diversity, community composition, trophic modes, and functional groups by altering plant properties (e.g., plant species richness, diversity, evenness, litter quantity and quality), quantity and quality of soil nutrient substrates, soil moisture and pH. These changes in soil fungal communities, particularly their trophic modes and functional groups along with natural revegetation, impact the accumulation and decomposition of soil C and N and potentially affect ecosystem C and N cycling in the Loess Plateau of China.
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Affiliation(s)
- Wen Yang
- College of Life Sciences, Shaanxi Normal University, Xi'an, China
- *Correspondence: Wen Yang,
| | - Longfei Diao
- College of Life Sciences, Shaanxi Normal University, Xi'an, China
| | - Yaqi Wang
- College of Life Sciences, Shaanxi Normal University, Xi'an, China
| | - Xitong Yang
- College of Life Sciences, Shaanxi Normal University, Xi'an, China
| | - Huan Zhang
- College of Life Sciences, Shaanxi Normal University, Xi'an, China
| | - Jinsong Wang
- Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, China
| | - Yiqi Luo
- Department of Biological Sciences, Center for Ecosystem Science and Society, Northern Arizona University, Flagstaff, AZ, United States
| | - Shuqing An
- School of Life Sciences, Nanjing University, Nanjing, China
| | - Xiaoli Cheng
- School of Ecology and Environmental Sciences, Yunnan University, Kunming, China
- Xiaoli Cheng,
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Liu L, Lin W, Zhang L, Tang X, Liu Y, Lan S, Wang S, Zhou Y, Chen X, Wang L, Chen X, Guo L. Changes and Correlation Between Physiological Characteristics of Rhododendron simsii and Soil Microbial Communities Under Heat Stress. FRONTIERS IN PLANT SCIENCE 2022; 13:950947. [PMID: 35937338 PMCID: PMC9355081 DOI: 10.3389/fpls.2022.950947] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Accepted: 06/23/2022] [Indexed: 06/15/2023]
Abstract
The relationship between Rhododendron simsii and its soil microbial community under heat stress was not clear. In this study, the effects of heat stress on the physiological characteristics, soil physicochemical properties and soil microbial community structure of R. simsii were investigated. The experimental control (CK) was set as day/night (14/10 h) 25/20°C and experimental treatments were set as light heat stress (LHS) 35/30°C and high heat stress (HHS) 40/35°C. Our results showed that, compared with CK, LHS treatment significantly increased malondialdehyde, hydrogen peroxide, proline and soluble sugar contents, as well as catalase and peroxidase activities, while HHS treatment significantly increased ascorbate peroxidase activity and decreased chlorophyll content. Compared with CK, LHS treatment significantly reduced soil ammonium-nitrogen and nitrate-nitrogen content, while HHS significantly increased soil ammonium-nitrogen content. Compared with CK, both treatments changed the soil microbial community structure. For bacterial community, LHS and HHS treatment resulting in the significant enrichment of Burkholderia-Caballeronia-Paraburkholderia and Occallatibacte, respectively. For fungal community, LHS treatment resulting in the significant enrichment of Candida, Mortierella and Boothiomyces. The redundancy analysis showed that plant physiological characteristics, soil ammonium-nitrogen content were significantly correlated with the soil microbial community. Therefore, heat stress altered the soil microbial community structure, and affected the availability of soil available nitrogen, which in turn affected the physiological characteristics of R. simsii. We suggest that soil microbial community may play an important role in plant resistance to heat stress, and its mechanism deserves further study.
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Affiliation(s)
- Lei Liu
- Key Laboratory of Genetics and Germplasm Innovation of Tropical Special Forest Trees and Ornamental Plants, Ministry of Education/College of Forestry, Hainan University, Haikou, China
| | - Wei Lin
- College of Forestry, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Li Zhang
- College of Tropical Crops, Hainan University, Haikou, China
| | - Xuexiao Tang
- Key Laboratory of Genetics and Germplasm Innovation of Tropical Special Forest Trees and Ornamental Plants, Ministry of Education/College of Forestry, Hainan University, Haikou, China
| | - Yue Liu
- Key Laboratory of Genetics and Germplasm Innovation of Tropical Special Forest Trees and Ornamental Plants, Ministry of Education/College of Forestry, Hainan University, Haikou, China
| | - Siren Lan
- College of Forestry, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Shusheng Wang
- Lushan Botanical Garden, Jiangxi Province and Chinese Academy of Sciences, Lushan, China
| | - Yan Zhou
- Guizhou Botanical Garden, Guiyang, China
| | - Xiaochou Chen
- College of Forestry, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Ling Wang
- Fuzhou Qinting Lake Park Management Office, Fuzhou, China
| | - Xiang Chen
- Institute of Biology, Guizhou Academy of Sciences, Guiyang, China
| | - Lijin Guo
- Key Laboratory of Genetics and Germplasm Innovation of Tropical Special Forest Trees and Ornamental Plants, Ministry of Education/College of Forestry, Hainan University, Haikou, China
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The Changes of Spatiotemporal Pattern of Rocky Desertification and Its Dominant Driving Factors in Typical Karst Mountainous Areas under the Background of Global Change. REMOTE SENSING 2022. [DOI: 10.3390/rs14102351] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
There are significant differences in the dominant driving factors of rocky desertification evolution in different historical periods in southwest karst mountainous areas. However, previous studies were mostly conducted in specific periods. In this study, taking Bijie City as an example, the spatial and temporal evolution pattern of rocky desertification in Bijie City in the recent 35 years was analyzed by introducing the feature space model and the gravity center model, and then the dominant driving factors of rocky desertification in the study area in different historical periods were clarified based on GeoDetector. The results were as follows: (1) The point-to-point B (bare land index)-DI (dryness index) feature space model has high applicability for rocky desertification monitoring, and its inversion accuracy was 91.3%. (2) During the past 35 years, the rocky desertification in Bijie belonged to the moderate rocky desertification on the whole, and zones of intensive and severe rocky desertification were mainly distributed in the Weining Yi, Hui, and Miao Autonomous Region. (3) During 1985–2020, the rocky desertification in Bijie City showed an overall weakening trend (‘weakening–aggravating–weakening’). (4) From 1985 to 2020, the gravity center of rocky desertification in Bijie City moved westward, indicating that the aggravating degree of rocky desertification in the western region of the study area was higher than that in the eastern region. (5) The dominant factors affecting the evolution of rocky desertification in the past 35 years shifted from natural factor (vegetation coverage) to human activity factor (population density). The research results could provide decision supports for the prevention and control of rocky desertification in Bijie City and even the southwest karst mountainous area.
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